Citrus Sinensis ID: 016660

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
Protein Sequence
MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEEEccccccEEEEEEEccccccEEEEEEEEEEcccccHHccccccccccccEEccccccEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEccEEEEcccccccccEEEEccccccccHHEEEEcccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHccccEEEcccccccHHHHHHHccccccEEEEccccHHHHHHHHHHHcccccEEEEEEEccccccEEEcccHHcccccEEEEEEcccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEEcHHHHHHHHcccccccccEccccEEEEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccHHHHHccccccccccEEEcccEEEEccccccccEcEEEEEHHHEEEccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccEEEcHHHccHHHHHHHHccccccEEEEEHcHHHHHHHHHHHHHccccEEEEEEEcccccccEEEccHHHHcccEEEEccHHHccHHHHHHHHHHHHHccccccHHHEEEEEEHHHHHHHHHHHHcccccEEEEEEcc
Coil and Loop (DISEMBL)
mdiekpsnktagkpiqcraaiatapgeplvidevivdppnsheVRVRIICTSLChsdvtfwkmkdfpavfprilgHEAIGVVEsvgenvdgvvegdvviphfladctecvgcrskkgnlcsafpfkispwmprdqtsrfkdlrgetihhfvsvssfseytvLDIAHvvkvdptvppnracllscgvstgvgAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKfeigkrfgvtefvnskncgdksiiidmtdggadycFECVGLASLVQEAYACCRKGWGKTIVlgvdqpgsqlslssFEVLHSGKILMGslfgglkaksdipILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Flexible Loop (DISEMBL)
mdiekpsnktagkpiqCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSafpfkispwmprdQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGkrfgvtefvnskncgDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Low Complexity Region (SEG)
MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIgvvesvgenvdgvvegdvvIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Disordered region (IsUnstruct)
***************QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM**
Disordered Region (DISOPRED)
***************QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG*
Disordered Region (DISEMBL)
************KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Disordered Region (DISPRO)
***********GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	385	2.2.26 [Sep-21-2011]
Q9FH04	390	Alcohol dehydrogenase-lik	yes	no	0.979	0.966	0.734	1e-167
Q9SK87	386	Alcohol dehydrogenase-lik	no	no	0.968	0.966	0.604	1e-128
Q0V7W6	389	Alcohol dehydrogenase-lik	no	no	0.968	0.958	0.598	1e-128
Q9SK86	388	Alcohol dehydrogenase-lik	no	no	0.963	0.956	0.594	1e-128
Q96533	379	Alcohol dehydrogenase cla	no	no	0.950	0.965	0.503	1e-105
A2XAZ3	381	Alcohol dehydrogenase cla	N/A	no	0.968	0.979	0.486	1e-104
Q0DWH1	381	Alcohol dehydrogenase cla	no	no	0.968	0.979	0.486	1e-104
P93629	381	Alcohol dehydrogenase cla	N/A	no	0.974	0.984	0.473	1e-101
P80572	378	Alcohol dehydrogenase cla	N/A	no	0.961	0.978	0.482	1e-101
P28032	380	Alcohol dehydrogenase 2 O	N/A	no	0.971	0.984	0.477	3e-99

>sp|Q9FH04|ADHL7_ARATH Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1

 Score =  589 bits (1518), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 280/381 (73%), Positives = 328/381 (86%), Gaps = 4/381 (1%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           NK++ KPI+C+AA++   GEPLV++E++V PP   EVR+RIICT+LCHSDVTFWK++  P
Sbjct: 10  NKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC +CV C+S K NLCS FPFK+
Sbjct: 70  ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKV 129

Query: 128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGV
Sbjct: 130 SPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGV 189

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++FG
Sbjct: 190 STGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFG 249

Query: 247 VTEFVNSKNCGDK---SIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
           VTEFVNS  C       +I +MTDGGADYCFECVG +SLVQEAYACCR+GWGKTI LGVD
Sbjct: 250 VTEFVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVD 309

Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
           +PGSQ+ L SF+VLH GKILMGSLFGGLKAK+ IPILLKRY+  ELELDKFVTHEMKFEE
Sbjct: 310 KPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEE 369

Query: 364 INSAFDLLIKGKCLRCVIWMG 384
           IN AF LL++GKC+RCV+WMG
Sbjct: 370 INDAFQLLLEGKCIRCVLWMG 390

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q9SK87|ADHL2_ARATH Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1

 Score =  458 bits (1178), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/379 (60%), Positives = 288/379 (75%), Gaps = 6/379 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-A 68
           T GKPI+C+AAI    GEPLVI+E+ VDPP ++EVR++I+CTSLCH+DVTFWK+   P A
Sbjct: 7   TEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSGPLA 66

Query: 69  VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-I 127
            FPRILGHEA+GVVES+GE VDG  +GDVV+P F   C EC  C S K N C+ +    +
Sbjct: 67  RFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDYL 126

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
           S       TSRFKD RGE IHHF+ VSSF+EYTV+DIAH+VK+ P +P + A LLSC V+
Sbjct: 127 SNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVA 186

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           TG+GAAW+ A+VE GSTVVIFGLG++GLAVAEG RL GA +IIGVD+   KFEIGKRFG+
Sbjct: 187 TGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGI 246

Query: 248 TEFVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 304
           T+FVN   CG+K+I   I +MTD GADY FEC+GLASL++EA+   R G GKTIVLG++Q
Sbjct: 247 TDFVNPALCGEKTISEVIREMTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQ 306

Query: 305 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 364
               +SL S+++L  G+ + G+LFGGLK K DIPIL+ RY+ KEL L+  +THE+ FEEI
Sbjct: 307 KALPISLGSYDLLR-GRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEEI 365

Query: 365 NSAFDLLIKGKCLRCVIWM 383
           N AF LL +G  +RC+IWM
Sbjct: 366 NKAFHLLAEGNSIRCIIWM 384

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0V7W6|ADHL5_ARATH Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1

 Score =  457 bits (1177), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/379 (59%), Positives = 292/379 (77%), Gaps = 6/379 (1%)

Query: 12  GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
           GKPI+C+AA++  PGE LVI+E+ VDPP ++EVR++IICTSLCH+DV+F K+   P A F
Sbjct: 12  GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARF 71

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
           PRILGHEA+GV+ES+GE+V+G  +GDVV+P F   C EC  C+S K N C+ F    +S 
Sbjct: 72  PRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSN 131

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                 TSRFKD  GE I+HF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct: 132 TRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTG 191

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           +GAAW+ ANVE GSTV +FGLG++GLAV EGARL GA +IIGVD+  EKFE+GK+FG T+
Sbjct: 192 IGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTD 251

Query: 250 FVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
           F+NS  CG+  I   I +MT GG DY FECVGL SL+ EA++  R G GKT+VLG+D+  
Sbjct: 252 FINSTLCGENKISEVIKEMTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHL 311

Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 366
           + +SL SF++L  G+ + GSLFGGLK K DIPIL+  Y+ KEL LD F+THE+KFEEIN 
Sbjct: 312 TPVSLGSFDLLR-GRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEEINK 370

Query: 367 AFDLLIKGKCLRCVIWMGE 385
           AFDLL++GK LRC++WM +
Sbjct: 371 AFDLLVQGKSLRCILWMNK 389

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SK86|ADHL1_ARATH Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1

 Score =  457 bits (1175), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/377 (59%), Positives = 288/377 (76%), Gaps = 6/377 (1%)

Query: 12  GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
           GKPI C+AAI    GE LVI+++ VDPP ++EVR++I+CTSLCH+D+TFWK+   P + F
Sbjct: 11  GKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFWKLSFGPISRF 70

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
           PRILGHEA+GVVES+GENVDG  +GDVV+P F   C EC  C+S K N C  +    IS 
Sbjct: 71  PRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFISN 130

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                  SRFKD  GE IHHF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct: 131 TRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTG 190

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           +GAAW+ ANVE GST+ IFGLG++GLAVAEGARL GA +IIG+D  S+KFE+GK+FG T+
Sbjct: 191 IGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTD 250

Query: 250 FVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
           F+N   CG+K I   I +MT+GG DY FECVGLASL+ EA+   R G GKT++LG+++  
Sbjct: 251 FINPTLCGEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHA 310

Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 366
           + +SL SF++L  G+++ GSLFGGLK+K DIPIL+  Y+ KEL LD F+THE+ F+EIN 
Sbjct: 311 APISLGSFDLLR-GRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINK 369

Query: 367 AFDLLIKGKCLRCVIWM 383
           AF LL +GK LRC++WM
Sbjct: 370 AFALLEEGKSLRCILWM 386

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q96533|ADHX_ARATH Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2

 Score =  383 bits (983), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/379 (50%), Positives = 266/379 (70%), Gaps = 13/379 (3%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T G+ I C+AA+A  P +PLVI++V V PP + EVR++I+ T+LCH+D   W  KD   +
Sbjct: 3   TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGL 62

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC----SAFPF 125
           FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC    SA   
Sbjct: 63  FPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGV 122

Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DPT P ++ CLL CG
Sbjct: 123 GI---MMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCG 178

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           V TG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+K+E  K+F
Sbjct: 179 VPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF 238

Query: 246 GVTEFVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 302
           GV EFVN K+  DK I   I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV
Sbjct: 239 GVNEFVNPKD-HDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297

Query: 303 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 362
              G ++S   F+++ +G++  G+ FGG K+++ +P L+++YM+KE+++D+++TH +   
Sbjct: 298 AASGQEISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLG 356

Query: 363 EINSAFDLLIKGKCLRCVI 381
           EIN AFDLL +G CLRCV+
Sbjct: 357 EINKAFDLLHEGTCLRCVL 375

Plays a central role in formaldehyde detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|A2XAZ3|ADHX_ORYSI Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/378 (48%), Positives = 263/378 (69%), Gaps = 5/378 (1%)

Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           ++ T G+ I C+AA+A    +P+ I++V V PP + EVRV+I+ T+LCH+D   W  KD 
Sbjct: 2   ASSTQGQVITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDP 61

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             +FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC      
Sbjct: 62  EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAA 121

Query: 127 ISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K++P  P ++ CLL CG
Sbjct: 122 TGVGVMMNDRKSRF-SINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCG 180

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           VSTG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+KF++ K F
Sbjct: 181 VSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNF 240

Query: 246 GVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
           GVTEFVN K+     + +I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV 
Sbjct: 241 GVTEFVNPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVA 300

Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
             G ++S   F+++ +G++  G+ FGG K++S +P L+++Y++KE+++D++VTH M   +
Sbjct: 301 ASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTD 359

Query: 364 INSAFDLLIKGKCLRCVI 381
           IN AFDLL +G CLRCV+
Sbjct: 360 INKAFDLLHEGGCLRCVL 377

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|Q0DWH1|ADHX_ORYSJ Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/378 (48%), Positives = 262/378 (69%), Gaps = 5/378 (1%)

Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           ++ T G+ I C+AA+A     P+ I++V V PP + EVRV+I+ T+LCH+D   W  KD 
Sbjct: 2   ASSTQGQVITCKAAVAWEANRPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDP 61

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             +FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC      
Sbjct: 62  EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAA 121

Query: 127 ISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K++P  P ++ CLL CG
Sbjct: 122 TGVGVMMNDRKSRF-SINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCG 180

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           VSTG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+KF++ K F
Sbjct: 181 VSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNF 240

Query: 246 GVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
           GVTEFVN K+     + +I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV 
Sbjct: 241 GVTEFVNPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVA 300

Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
             G ++S   F+++ +G++  G+ FGG K++S +P L+++Y++KE+++D++VTH M   +
Sbjct: 301 ASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTD 359

Query: 364 INSAFDLLIKGKCLRCVI 381
           IN AFDLL +G CLRCV+
Sbjct: 360 INKAFDLLHEGGCLRCVL 377

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P93629|ADHX_MAIZE Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1

 Score =  370 bits (950), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/380 (47%), Positives = 259/380 (68%), Gaps = 5/380 (1%)

Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           ++ T G+ I C+AA+A  P +PLVI++V V PP + EVRV+I+ T+LCH+D   W  KD 
Sbjct: 2   ASPTQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDP 61

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             +FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC      
Sbjct: 62  EGLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSA 121

Query: 127 ISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                M  D  SRF  + G+ I+HF+  S+FS+YTV+    V K++P  P ++ CLL CG
Sbjct: 122 TGVGVMMNDMKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCG 180

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           V TG+GA W TA VE GS V +FGLG++GLAVAEGA+  GA+R+IG+D+ ++KF++ K F
Sbjct: 181 VPTGLGAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVAKNF 240

Query: 246 GVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
           GVTEFVN K      + +++D+TDGG DY FEC+G  S+++ A  C  KGWG ++++GV 
Sbjct: 241 GVTEFVNPKEHDKPIQQVLVDLTDGGVDYSFECIGNVSIMRAALECSDKGWGTSVIVGVA 300

Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
             G ++S   F+++ +G++  G+ FGG K+++ +P L+ +YM KE+++D+++TH M   +
Sbjct: 301 ASGQEISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLAD 359

Query: 364 INSAFDLLIKGKCLRCVIWM 383
           IN AF LL +G CLRCV+ M
Sbjct: 360 INDAFHLLHEGGCLRCVLAM 379

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P80572|ADHX_PEA Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/375 (48%), Positives = 259/375 (69%), Gaps = 5/375 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T G+ I C+AA+A  P +PL I++V V PP ++EVR++I+ T+LCH+D      KD   +
Sbjct: 2   TQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTLGGKDPEGL 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC         
Sbjct: 62  FPCILGHEAAGIVESVGEGVTDVKPGDHVIPSYQAECGECKFCKSPKTNLCGKVRAATGV 121

Query: 130 W-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
             M  D+ SRF  ++G+ I+HF+  S+FS+YTV+    V K+ P  P ++ CLL CGV T
Sbjct: 122 GVMMADRKSRF-SVKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLDKVCLLGCGVPT 180

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
           G+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S K++  K FGVT
Sbjct: 181 GLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSNKYDTAKNFGVT 240

Query: 249 EFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
           EF+N K+     + +IID+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV   G
Sbjct: 241 EFINPKDHEKPIQQVIIDLTDGGVDYSFECLGNVSVMRSALECCHKGWGTSVIVGVAASG 300

Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 366
            ++S   F+++ +G++  G+ FGG K++S +P L+++Y+ KE+++D+++TH +   EIN 
Sbjct: 301 QEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLLEINK 359

Query: 367 AFDLLIKGKCLRCVI 381
           AFDLL +G+CLRCV+
Sbjct: 360 AFDLLHEGQCLRCVL 374

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P28032|ADH2_SOLLC Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2

 Score =  362 bits (929), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 181/379 (47%), Positives = 251/379 (66%), Gaps = 5/379 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T G+ I+C+AA+A   G+PLV++EV V PP   EVR++I+ TSLCH+DV FW+ K    V
Sbjct: 4   TVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPV 63

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FPRILGHEA G+VESVGE V  +  GD V+P F  +C +C  C+S++ N+CS        
Sbjct: 64  FPRILGHEAAGIVESVGEGVTDLAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDR 123

Query: 130 W-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
             M  D  SRF  + G  I+HFV  S+FSEYTV+ +  V K++P  P ++ C+LSCG+ST
Sbjct: 124 GVMLNDGKSRF-SINGNPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGIST 182

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
           G+GA+   A    GS+V IFGLG++GLA AEGAR+ GA+RIIGVD+ + +FE  K+FGVT
Sbjct: 183 GLGASLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFGVT 242

Query: 249 EFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
           EFVN K+     + +I +MTDGG D   EC G    +  A+ C   GWG  +++GV    
Sbjct: 243 EFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGVPHKE 302

Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 366
           +         L+  + L G+ FG  K +SDIP ++++YM+KELEL+KF+TH + F EIN 
Sbjct: 303 AVFKTHPLNFLNE-RTLKGTFFGNYKPRSDIPCVVEKYMNKELELEKFITHTLPFAEINK 361

Query: 367 AFDLLIKGKCLRCVIWMGE 385
           AFDL++KG+ LRC+I M +
Sbjct: 362 AFDLMLKGEGLRCIITMAD 380

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
255539138	386	alcohol dehydrogenase, putative [Ricinus	0.976	0.974	0.759	1e-171
225459818	384	PREDICTED: alcohol dehydrogenase-like 7	0.979	0.981	0.739	1e-168
7705214	389	alcohol dehydrogenase ADH [Solanum lycop	0.968	0.958	0.739	1e-166
297795321	390	hypothetical protein ARALYDRAFT_494804 [	0.979	0.966	0.727	1e-166
15238330	390	alcohol dehydrogenase-like 7 [Arabidopsi	0.979	0.966	0.734	1e-166
356554319	387	PREDICTED: alcohol dehydrogenase-like 7-	0.987	0.981	0.723	1e-162
356554321	388	PREDICTED: alcohol dehydrogenase-like 7-	0.994	0.987	0.720	1e-162
224065707	398	predicted protein [Populus trichocarpa]	0.992	0.959	0.751	1e-162
7705215	390	alcohol dehydrogenase ADH [Solanum lycop	0.976	0.964	0.725	1e-161
359492331	395	PREDICTED: alcohol dehydrogenase-like 7-	0.976	0.951	0.696	1e-160

>gi|255539138|ref|XP_002510634.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223551335|gb|EEF52821.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 288/379 (75%), Positives = 332/379 (87%), Gaps = 3/379 (0%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           + G PI+C+AA+   PGEPLVI+E++V PPN HEVR++IICTSLC SD+TFW++KDFPAV
Sbjct: 8   SVGTPIRCKAAVCRKPGEPLVIEEILVAPPNRHEVRIQIICTSLCQSDITFWRLKDFPAV 67

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FPRILGHEA+GVVESVGE+V    EGD VIP FL DC +C  C SKK NLCS  PFK+SP
Sbjct: 68  FPRILGHEAVGVVESVGEDVKEFKEGDTVIPTFLPDCGDCTDCISKKSNLCSKLPFKVSP 127

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
           WMPR +TSRF DL GE ++HF+SVSSFS+YTV+DIAH+ KVDP++PPNRACLLSCGVSTG
Sbjct: 128 WMPRYETSRFTDLNGEALYHFLSVSSFSQYTVIDIAHLTKVDPSIPPNRACLLSCGVSTG 187

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           VGAAWRTANVE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD    KFEIGK+FGVTE
Sbjct: 188 VGAAWRTANVEAGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDTNPNKFEIGKKFGVTE 247

Query: 250 FVNSKNCGDKS---IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
           FV++ + G+KS   +I +MT GGADYCFECVGLASLV+EAY+CCRKGWGKTIVLGVD+PG
Sbjct: 248 FVSAGDLGNKSASQVINEMTGGGADYCFECVGLASLVREAYSCCRKGWGKTIVLGVDKPG 307

Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 366
           +QLSLSSF+VLHSGKIL GSLFGGLKAKSDIP+LLKRY  KEL+LD+FVTHE+ FE+IN 
Sbjct: 308 AQLSLSSFDVLHSGKILTGSLFGGLKAKSDIPVLLKRYTAKELQLDEFVTHEINFEDINK 367

Query: 367 AFDLLIKGKCLRCVIWMGE 385
           AFDLLI G+ LRCVIWM +
Sbjct: 368 AFDLLIGGESLRCVIWMNK 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459818|ref|XP_002285916.1| PREDICTED: alcohol dehydrogenase-like 7 [Vitis vinifera] gi|302141683|emb|CBI18886.3| unnamed protein product [Vitis vinifera]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 281/380 (73%), Positives = 333/380 (87%), Gaps = 3/380 (0%)

Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           + +T GKPI+CRAA+    GEPLV++EV+V PP + EVR+RIICTSLC+SD+TFWK+KD 
Sbjct: 3   AGETRGKPIRCRAAVCWKAGEPLVMEEVMVAPPLAGEVRIRIICTSLCYSDITFWKLKDP 62

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
           P  FPRILGHEA+GVVESVGENV  V EGD+V+P FL DC EC  CRS+K NLCS FPFK
Sbjct: 63  PGCFPRILGHEAVGVVESVGENVSEVTEGDIVLPIFLPDCGECTDCRSEKSNLCSKFPFK 122

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           +SPWMPR ++SRF DL+GE ++HF+ VSSFSEYTV+DIA++ K+DP +PPNRACL SCGV
Sbjct: 123 VSPWMPRYESSRFTDLKGEVLYHFLFVSSFSEYTVVDIANITKIDPNIPPNRACLFSCGV 182

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           STGVGAAW+TANVE GSTV IFGLG+IGLAVAEGARLCGA+RIIGVD+  +KFEIGK+FG
Sbjct: 183 STGVGAAWKTANVEKGSTVAIFGLGAIGLAVAEGARLCGASRIIGVDLNPDKFEIGKKFG 242

Query: 247 VTEFVNSKNCGD---KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
           VT+FVNS NCG+   K +I++MTDGGADYCFECVG ASLV EA+ACCRKGWGKTIVLGVD
Sbjct: 243 VTDFVNSGNCGNKPVKQVIMEMTDGGADYCFECVGAASLVHEAFACCRKGWGKTIVLGVD 302

Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
           +PGS L+  SF++LHSGK LMGSL+GG+K KSDIPILLKRYMDKEL++DKFVTHEM+FE+
Sbjct: 303 RPGSMLNFLSFDILHSGKSLMGSLYGGVKPKSDIPILLKRYMDKELDVDKFVTHEMRFED 362

Query: 364 INSAFDLLIKGKCLRCVIWM 383
           IN AFDLLI+GK LRCV+WM
Sbjct: 363 INKAFDLLIQGKSLRCVLWM 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7705214|gb|AAB33480.2| alcohol dehydrogenase ADH [Solanum lycopersicum]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 278/376 (73%), Positives = 328/376 (87%), Gaps = 3/376 (0%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           AGKPI+C+AA+A   GEPLVI+EVIV PP +HEVRV+IICTSLCH+D+T WK+K+FP  F
Sbjct: 11  AGKPIRCKAAVARKAGEPLVIEEVIVAPPKAHEVRVKIICTSLCHTDITLWKLKEFPGCF 70

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           PRILGHEA GVVESVGE+VD + EGD V+P FL DC +CV C+SKK NLCS FP ++SP 
Sbjct: 71  PRILGHEAFGVVESVGEDVDELKEGDSVVPIFLPDCMDCVDCKSKKSNLCSKFPIQVSPL 130

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           + R+ TSRF +  GET+HHF+ +SSFSEYTV+D+ +V K+DP +PPNRACLLSCGVSTGV
Sbjct: 131 LHRNDTSRFSNAAGETLHHFLYISSFSEYTVVDVVNVTKIDPEIPPNRACLLSCGVSTGV 190

Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAAW+TANVE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD+ S KFEIGK+FG+TEF
Sbjct: 191 GAAWKTANVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDINSNKFEIGKQFGITEF 250

Query: 251 VNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
           VNSK+C DK I   II+MTDGGADYCFECVGLA+LVQEA+ CCRKGWGKT+VLGVD+P +
Sbjct: 251 VNSKSCVDKPISQVIIEMTDGGADYCFECVGLATLVQEAFTCCRKGWGKTVVLGVDKPDA 310

Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            L+L+SFEVL S K L G+LFGGLK KSD+PIL+KRY+DKEL+L+KFVTHE+ FE+IN A
Sbjct: 311 HLNLNSFEVLQSQKTLTGALFGGLKPKSDVPILVKRYLDKELQLNKFVTHEVNFEDINKA 370

Query: 368 FDLLIKGKCLRCVIWM 383
           FDLLI+GK LRCVIWM
Sbjct: 371 FDLLIQGKSLRCVIWM 386

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795321|ref|XP_002865545.1| hypothetical protein ARALYDRAFT_494804 [Arabidopsis lyrata subsp. lyrata] gi|297311380|gb|EFH41804.1| hypothetical protein ARALYDRAFT_494804 [Arabidopsis lyrata subsp. lyrata]

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/381 (72%), Positives = 330/381 (86%), Gaps = 4/381 (1%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           NK++ KPI+C+AA++   GEPLV++E++V PP  +EVR+RIICT+LCHSDVTFWK++  P
Sbjct: 10  NKSSRKPIRCKAAVSRKAGEPLVMEEIMVAPPQPYEVRIRIICTALCHSDVTFWKLQVPP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC ECV C+S+K NLCS FPFK+
Sbjct: 70  ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGECVDCKSQKSNLCSKFPFKV 129

Query: 128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           SPWMPR + +SRF DL G+T+ HF++VSSFSEYTVLD+A++VK+D ++PP+RACLLSCGV
Sbjct: 130 SPWMPRYENSSRFTDLNGQTLFHFLNVSSFSEYTVLDVANIVKIDSSIPPSRACLLSCGV 189

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G+ FG
Sbjct: 190 STGVGAAWETAKVEQGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPAKFQVGQNFG 249

Query: 247 VTEFVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
           +TEFVNS  C  KS+   I +MT GGADYCFECVG +SLVQEAYACCR+GWGKTI LGVD
Sbjct: 250 ITEFVNSMTCEKKSVSEVINEMTGGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVD 309

Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
           +PGSQ+ L SF+VLH GKILMGSLFGGLKAK+ IP+LLKRY+  ELELDKFVTHEMKFEE
Sbjct: 310 KPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPLLLKRYLSNELELDKFVTHEMKFEE 369

Query: 364 INSAFDLLIKGKCLRCVIWMG 384
           IN AF LL++GKC+RCV+WMG
Sbjct: 370 INDAFQLLLEGKCIRCVLWMG 390

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238330|ref|NP_199040.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana] gi|75333830|sp|Q9FH04.1|ADHL7_ARATH RecName: Full=Alcohol dehydrogenase-like 7 gi|10177010|dbj|BAB10198.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|19698971|gb|AAL91221.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|22136298|gb|AAM91227.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|332007405|gb|AED94788.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana]

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 280/381 (73%), Positives = 328/381 (86%), Gaps = 4/381 (1%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           NK++ KPI+C+AA++   GEPLV++E++V PP   EVR+RIICT+LCHSDVTFWK++  P
Sbjct: 10  NKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC +CV C+S K NLCS FPFK+
Sbjct: 70  ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKV 129

Query: 128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGV
Sbjct: 130 SPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGV 189

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++FG
Sbjct: 190 STGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFG 249

Query: 247 VTEFVNSKNCGDK---SIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
           VTEFVNS  C       +I +MTDGGADYCFECVG +SLVQEAYACCR+GWGKTI LGVD
Sbjct: 250 VTEFVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVD 309

Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
           +PGSQ+ L SF+VLH GKILMGSLFGGLKAK+ IPILLKRY+  ELELDKFVTHEMKFEE
Sbjct: 310 KPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEE 369

Query: 364 INSAFDLLIKGKCLRCVIWMG 384
           IN AF LL++GKC+RCV+WMG
Sbjct: 370 INDAFQLLLEGKCIRCVLWMG 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554319|ref|XP_003545495.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 1 [Glycine max]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/383 (72%), Positives = 326/383 (85%), Gaps = 3/383 (0%)

Query: 4   EKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM 63
           +K +  + G+PI+C+AAI   PG PL I+E+IV PP   E R+R+ICTSLCHSDVTFWKM
Sbjct: 3   DKLATTSEGQPIRCKAAICRKPGSPLSIEEIIVAPPMPREARIRVICTSLCHSDVTFWKM 62

Query: 64  KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 123
           +  PA+ PRILGHEA+GVVESVGE+V  V +GDVV+P FL DC EC+ C+S K NLCS F
Sbjct: 63  EVPPAICPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNLCSKF 122

Query: 124 PFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 183
           PF++SPWMPR  TSRF DL+G+ IHHF+ VSSFSEYTV+DIAH+ K+DP +PPNRACLLS
Sbjct: 123 PFEVSPWMPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRACLLS 182

Query: 184 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 243
           CGVSTGVGAAWRTA VE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  EK+E GK
Sbjct: 183 CGVSTGVGAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYETGK 242

Query: 244 RFGVTEFVNSKNCGDKS---IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 300
           +FG+T+FV++    +KS   +II+MT GGADYCFECVG+A+LVQEAYA CRKGWGK IVL
Sbjct: 243 KFGLTDFVHAGESENKSVSQVIIEMTGGGADYCFECVGMATLVQEAYASCRKGWGKAIVL 302

Query: 301 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 360
           GV++PGS LSLS  EVLHSGK L+G LFGGLK KSD+PILLKRYMDKEL LD+FVTHE++
Sbjct: 303 GVEKPGSMLSLSCNEVLHSGKSLVGCLFGGLKPKSDVPILLKRYMDKELNLDEFVTHEVE 362

Query: 361 FEEINSAFDLLIKGKCLRCVIWM 383
           F++IN AFDLLI+G+CLRCVIWM
Sbjct: 363 FKDINKAFDLLIEGQCLRCVIWM 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554321|ref|XP_003545496.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 2 [Glycine max]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 278/386 (72%), Positives = 326/386 (84%), Gaps = 3/386 (0%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           M  +  S+   G+PI+C+AAI   PG PL I+E+IV PP   E R+R+ICTSLCHSDVTF
Sbjct: 1   MASQNSSSLCEGQPIRCKAAICRKPGSPLSIEEIIVAPPMPREARIRVICTSLCHSDVTF 60

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
           WKM+  PA+ PRILGHEA+GVVESVGE+V  V +GDVV+P FL DC EC+ C+S K NLC
Sbjct: 61  WKMEVPPAICPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNLC 120

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
           S FPF++SPWMPR  TSRF DL+G+ IHHF+ VSSFSEYTV+DIAH+ K+DP +PPNRAC
Sbjct: 121 SKFPFEVSPWMPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRAC 180

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           LLSCGVSTGVGAAWRTA VE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  EK+E
Sbjct: 181 LLSCGVSTGVGAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYE 240

Query: 241 IGKRFGVTEFVNSKNCGDKS---IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT 297
            GK+FG+T+FV++    +KS   +II+MT GGADYCFECVG+A+LVQEAYA CRKGWGK 
Sbjct: 241 TGKKFGLTDFVHAGESENKSVSQVIIEMTGGGADYCFECVGMATLVQEAYASCRKGWGKA 300

Query: 298 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTH 357
           IVLGV++PGS LSLS  EVLHSGK L+G LFGGLK KSD+PILLKRYMDKEL LD+FVTH
Sbjct: 301 IVLGVEKPGSMLSLSCNEVLHSGKSLVGCLFGGLKPKSDVPILLKRYMDKELNLDEFVTH 360

Query: 358 EMKFEEINSAFDLLIKGKCLRCVIWM 383
           E++F++IN AFDLLI+G+CLRCVIWM
Sbjct: 361 EVEFKDINKAFDLLIEGQCLRCVIWM 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065707|ref|XP_002301931.1| predicted protein [Populus trichocarpa] gi|222843657|gb|EEE81204.1| predicted protein [Populus trichocarpa]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 290/386 (75%), Positives = 338/386 (87%), Gaps = 4/386 (1%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           MD EK S + AGKPI C+AA+A  PGEPLVI+E+IV PP+ HEVRVRIICTSLC SDVTF
Sbjct: 1   MDGEKFSVE-AGKPILCKAAVARKPGEPLVIEEIIVAPPSHHEVRVRIICTSLCQSDVTF 59

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
           WK+KD PAVFPRILGHEAIGVVESVGE+VD VVEGDVVIP FL DC +C  C+SKK NLC
Sbjct: 60  WKLKDLPAVFPRILGHEAIGVVESVGEDVDEVVEGDVVIPVFLPDCGDCADCKSKKSNLC 119

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
           S  PF++SPWMPRD+TSRF +L+GE ++HF++VSSFSEYTV+D AH+VK+DP++PP++AC
Sbjct: 120 SKLPFQVSPWMPRDKTSRFTNLKGEVLYHFLNVSSFSEYTVVDTAHIVKIDPSIPPSKAC 179

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           LLSCGVSTGVGAAWRTANVE GSTVVIFGLGSIGLAVAEGAR+ GAT+IIGVDV  EKFE
Sbjct: 180 LLSCGVSTGVGAAWRTANVEAGSTVVIFGLGSIGLAVAEGARISGATKIIGVDVNQEKFE 239

Query: 241 IGKRFGVTEFVNSKNCGDK---SIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT 297
           I K+FGVT+FVN   CGDK    +I +MT GGADYCFECVGL SL+++AYACCRKGWGKT
Sbjct: 240 IAKKFGVTDFVNVGECGDKPVSQVINEMTGGGADYCFECVGLVSLMEQAYACCRKGWGKT 299

Query: 298 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTH 357
           I+LGV++P S++SL   +VL SGK L G+LFGGLKAKSDIPILLKRYMDKELELDK+VTH
Sbjct: 300 IILGVEKPESRVSLPCADVLQSGKTLTGALFGGLKAKSDIPILLKRYMDKELELDKYVTH 359

Query: 358 EMKFEEINSAFDLLIKGKCLRCVIWM 383
           E+ F++IN AFDLL++GK LRCVIWM
Sbjct: 360 EINFKDINKAFDLLLEGKSLRCVIWM 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7705215|gb|AAB33481.2| alcohol dehydrogenase ADH [Solanum lycopersicum]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 275/379 (72%), Positives = 323/379 (85%), Gaps = 3/379 (0%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           +KTAGKPI+CRAA+A   GEPLVI+EVIV PP +HEVR++IICTSLCH+D+T WK+K+FP
Sbjct: 10  SKTAGKPIRCRAAVARKAGEPLVIEEVIVAPPKAHEVRLKIICTSLCHTDITLWKLKEFP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
             FPRILGHEA GVVESVGE+VD + EGD V+P FL DC +CV C+SKK NLCS FP + 
Sbjct: 70  GCFPRILGHEAFGVVESVGEDVDHLKEGDSVVPIFLPDCMDCVDCKSKKSNLCSKFPIQS 129

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
           S  + RD TSRF +  GET+HH++ +SSFSEYTV+D+ +V K+DP +PPNRACLLSCGVS
Sbjct: 130 SLLLHRDDTSRFTNADGETLHHYLYISSFSEYTVVDVVNVTKIDPEIPPNRACLLSCGVS 189

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           TGVGAAW+TANVE GSTVVIFGLGS+GLAVAEGARLCGATRIIGV   S+KFEIGK+FGV
Sbjct: 190 TGVGAAWKTANVEPGSTVVIFGLGSVGLAVAEGARLCGATRIIGVGRNSDKFEIGKQFGV 249

Query: 248 TEFVNSKNCGDK---SIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 304
           TEFVNSK+CGDK    +II+MT+GGADYC ECVGL  +VQEA+ACCRKGWGKTIVLGVD+
Sbjct: 250 TEFVNSKSCGDKPVSQVIIEMTNGGADYCNECVGLGRVVQEAFACCRKGWGKTIVLGVDK 309

Query: 305 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 364
           P ++L+L+SFEVL S K LMGS FGGLK KSD+   LKRY+DKELELDKFVTHE+  E+I
Sbjct: 310 PDARLNLNSFEVLQSNKTLMGSFFGGLKPKSDVHTSLKRYLDKELELDKFVTHEVNLEDI 369

Query: 365 NSAFDLLIKGKCLRCVIWM 383
           N AFDLLI+ K LRCVIWM
Sbjct: 370 NKAFDLLIQLKTLRCVIWM 388

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492331|ref|XP_002285917.2| PREDICTED: alcohol dehydrogenase-like 7-like [Vitis vinifera] gi|302141684|emb|CBI18887.3| unnamed protein product [Vitis vinifera]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 264/379 (69%), Positives = 325/379 (85%), Gaps = 3/379 (0%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           ++T GKPI+CRAA++   GEPLV++EV+V PP + EVR+RIICTSLCHSD+TFWK+K+ P
Sbjct: 15  SQTRGKPIRCRAAVSRKAGEPLVMEEVMVAPPMAGEVRIRIICTSLCHSDLTFWKLKEPP 74

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEA+GVVESVGENV  V EGD V+P F+ DC EC+ CRS+K NLCS FPF+I
Sbjct: 75  ACFPRILGHEAVGVVESVGENVTEVAEGDTVLPIFIPDCGECMDCRSEKSNLCSKFPFEI 134

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
           SPW+PR ++SRF DL+GE ++HF++VSSFSEYTV+DI ++ K+ P +PPN+ACL SCGVS
Sbjct: 135 SPWLPRHKSSRFTDLKGEVLYHFLNVSSFSEYTVVDIDNITKISPAIPPNKACLFSCGVS 194

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           TGVGAAWRTA VE GSTVVIFGLG+IGLAVAEGARLCGA+RIIGVD   EKF++ K+FGV
Sbjct: 195 TGVGAAWRTAKVEKGSTVVIFGLGAIGLAVAEGARLCGASRIIGVDTNLEKFDVAKKFGV 254

Query: 248 TEFVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 304
           TEFVN +NCGDK +   I++MTDGGADYCFECVG ASLVQ+A+A CRKGWGK I++GVD+
Sbjct: 255 TEFVNPRNCGDKPVSQAIVEMTDGGADYCFECVGFASLVQDAFASCRKGWGKAIMVGVDK 314

Query: 305 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 364
           PG+ L+ SS E+LH GK +MGS++GGLK KS IP+LL+R +DKEL +D F+THEMKFE+I
Sbjct: 315 PGAMLNFSSVEMLHCGKSVMGSIYGGLKPKSHIPVLLQRLVDKELNVDNFITHEMKFEDI 374

Query: 365 NSAFDLLIKGKCLRCVIWM 383
           N AFDLL KGK +RCV+WM
Sbjct: 375 NKAFDLLAKGKSIRCVMWM 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
TAIR|locus:2157627	390	AT5G42250 [Arabidopsis thalian	0.979	0.966	0.692	1.7e-146
TAIR|locus:2120663	389	AT4G22110 [Arabidopsis thalian	0.968	0.958	0.567	7.6e-112
TAIR|locus:2009512	386	AT1G22440 [Arabidopsis thalian	0.968	0.966	0.567	4.2e-111
TAIR|locus:2009522	388	AT1G22430 [Arabidopsis thalian	0.963	0.956	0.554	8.7e-111
TAIR|locus:2184575	381	AT5G24760 [Arabidopsis thalian	0.945	0.955	0.452	2.6e-86
TAIR|locus:2025237	379	ADH1 "alcohol dehydrogenase 1"	0.966	0.981	0.440	4.4e-84
ZFIN|ZDB-GENE-011003-1	376	adh5 "alcohol dehydrogenase 5"	0.961	0.984	0.433	6.4e-83
TAIR|locus:2035619	394	AT1G32780 [Arabidopsis thalian	0.966	0.944	0.441	8.5e-81
UNIPROTKB|J9PA83	374	ADH5 "Uncharacterized protein"	0.958	0.986	0.412	6e-80
UNIPROTKB|F1PLM5	376	F1PLM5 "Uncharacterized protei	0.948	0.970	0.414	1.2e-79

TAIR|locus:2157627 AT5G42250 [Arabidopsis thaliana (taxid:3702)]

 Score = 1431 (508.8 bits), Expect = 1.7e-146, P = 1.7e-146
 Identities = 264/381 (69%), Positives = 312/381 (81%)

Query:     8 NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
             NK++ KPI+C+AA++   GEPLV++E++V PP   EVR+RIICT+LCHSDVTFWK++  P
Sbjct:    10 NKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPP 69

Query:    68 AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
             A FPRILGHEAI                   +P F+ DC +CV C+S K NLCS FPFK+
Sbjct:    70 ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKV 129

Query:   128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
             SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGV
Sbjct:   130 SPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGV 189

Query:   187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
             STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++FG
Sbjct:   190 STGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFG 249

Query:   247 VTEFVNSKNCGDK---SIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
             VTEFVNS  C       +I +MTDGGADYCFECVG +SLVQEAYACCR+GWGKTI LGVD
Sbjct:   250 VTEFVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVD 309

Query:   304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
             +PGSQ+ L SF+VLH GKILMGSLFGGLKAK+ IPILLKRY+  ELELDKFVTHEMKFEE
Sbjct:   310 KPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEE 369

Query:   364 INSAFDLLIKGKCLRCVIWMG 384
             IN AF LL++GKC+RCV+WMG
Sbjct:   370 INDAFQLLLEGKCIRCVLWMG 390

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2120663 AT4G22110 [Arabidopsis thaliana (taxid:3702)]

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 215/379 (56%), Positives = 275/379 (72%)

Query:    12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
             GKPI+C+AA++  PGE LVI+E+ VDPP ++EVR++IICTSLCH+DV+F K+   P A F
Sbjct:    12 GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARF 71

Query:    71 PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
             PRILGHEA+                   +P F   C EC  C+S K N C+ F    +S 
Sbjct:    72 PRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSN 131

Query:   130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                   TSRFKD  GE I+HF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct:   132 TRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTG 191

Query:   190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
             +GAAW+ ANVE GSTV +FGLG++GLAV EGARL GA +IIGVD+  EKFE+GK+FG T+
Sbjct:   192 IGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTD 251

Query:   250 FVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
             F+NS  CG+  I   I +MT GG DY FECVGL SL+ EA++  R G GKT+VLG+D+  
Sbjct:   252 FINSTLCGENKISEVIKEMTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHL 311

Query:   307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 366
             + +SL SF++L  G+ + GSLFGGLK K DIPIL+  Y+ KEL LD F+THE+KFEEIN 
Sbjct:   312 TPVSLGSFDLLR-GRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEEINK 370

Query:   367 AFDLLIKGKCLRCVIWMGE 385
             AFDLL++GK LRC++WM +
Sbjct:   371 AFDLLVQGKSLRCILWMNK 389

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2009512 AT1G22440 [Arabidopsis thaliana (taxid:3702)]

 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 215/379 (56%), Positives = 272/379 (71%)

Query:    10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-A 68
             T GKPI+C+AAI    GEPLVI+E+ VDPP ++EVR++I+CTSLCH+DVTFWK+   P A
Sbjct:     7 TEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSGPLA 66

Query:    69 VFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-I 127
              FPRILGHEA+                   +P F   C EC  C S K N C+ +    +
Sbjct:    67 RFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDYL 126

Query:   128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
             S       TSRFKD RGE IHHF+ VSSF+EYTV+DIAH+VK+ P +P + A LLSC V+
Sbjct:   127 SNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVA 186

Query:   188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
             TG+GAAW+ A+VE GSTVVIFGLG++GLAVAEG RL GA +IIGVD+   KFEIGKRFG+
Sbjct:   187 TGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGI 246

Query:   248 TEFVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 304
             T+FVN   CG+K+I   I +MTD GADY FEC+GLASL++EA+   R G GKTIVLG++Q
Sbjct:   247 TDFVNPALCGEKTISEVIREMTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQ 306

Query:   305 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 364
                 +SL S+++L  G+ + G+LFGGLK K DIPIL+ RY+ KEL L+  +THE+ FEEI
Sbjct:   307 KALPISLGSYDLLR-GRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEEI 365

Query:   365 NSAFDLLIKGKCLRCVIWM 383
             N AF LL +G  +RC+IWM
Sbjct:   366 NKAFHLLAEGNSIRCIIWM 384

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2009522 AT1G22430 [Arabidopsis thaliana (taxid:3702)]

 Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
 Identities = 209/377 (55%), Positives = 271/377 (71%)

Query:    12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
             GKPI C+AAI    GE LVI+++ VDPP ++EVR++I+CTSLCH+D+TFWK+   P + F
Sbjct:    11 GKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFWKLSFGPISRF 70

Query:    71 PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
             PRILGHEA+                   +P F   C EC  C+S K N C  +    IS 
Sbjct:    71 PRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFISN 130

Query:   130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                    SRFKD  GE IHHF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct:   131 TRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTG 190

Query:   190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
             +GAAW+ ANVE GST+ IFGLG++GLAVAEGARL GA +IIG+D  S+KFE+GK+FG T+
Sbjct:   191 IGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTD 250

Query:   250 FVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
             F+N   CG+K I   I +MT+GG DY FECVGLASL+ EA+   R G GKT++LG+++  
Sbjct:   251 FINPTLCGEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHA 310

Query:   307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 366
             + +SL SF++L  G+++ GSLFGGLK+K DIPIL+  Y+ KEL LD F+THE+ F+EIN 
Sbjct:   311 APISLGSFDLLR-GRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINK 369

Query:   367 AFDLLIKGKCLRCVIWM 383
             AF LL +GK LRC++WM
Sbjct:   370 AFALLEEGKSLRCILWM 386

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2184575 AT5G24760 [Arabidopsis thaliana (taxid:3702)]

 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 168/371 (45%), Positives = 238/371 (64%)

Query:    15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
             I C AA+A   GEPLV++EV V PP   E+R++++CTSLC SD++ W+ +   ++ PRI 
Sbjct:    14 ITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWESQ---SLLPRIF 70

Query:    75 GHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             GHEA                    +  F  +C  C  C S K N+C     +    M  D
Sbjct:    71 GHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERKGLMHSD 130

Query:   135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
             Q +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+ G+GAAW
Sbjct:   131 QKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAW 189

Query:   195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
               A+V+ GS+VVIFGLG++GL+VA+GA+L GA +I+GVD+   K E  K FGVT+F+NS 
Sbjct:   190 NVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTDFINSN 249

Query:   255 NCGDK--SIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 312
             +  +    +I  MT GGAD+ FECVG   +   A   C  GWG T+ LGV +   ++S +
Sbjct:   250 DLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKPEVS-A 308

Query:   313 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 372
              + +  SGK L G+LFGG K KSD+P L+ +YM+KE+ +D+F+TH + F+EIN AF L+ 
Sbjct:   309 HYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKAFVLMR 368

Query:   373 KGKCLRCVIWM 383
             +GKCLRCV+ M
Sbjct:   369 EGKCLRCVLHM 379

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 167/379 (44%), Positives = 232/379 (61%)

Query:    10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
             T G+ I+C+AA+A   G+PLVI+EV V PP  HEVR++I+ TSLCH+DV FW+ K    +
Sbjct:     3 TTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTPL 62

Query:    70 FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
             FPRI GHEA                    +P F  +C EC  C S++ N+C         
Sbjct:    63 FPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTER 122

Query:   130 W-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
               M  D  SRF  + G+ I+HF+  S+FSEYTV+    V K++P  P ++ C++SCG+ST
Sbjct:   123 GGMIHDGESRFS-INGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLST 181

Query:   189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
             G+GA    A  + G +V IFGLG++GL  AEGAR+ GA+RIIGVD  S++F+  K FGVT
Sbjct:   182 GLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGVT 241

Query:   249 EFVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 305
             E VN K+  DK I   I +MTDGG D   EC G    + +A+ C   GWG  +++GV   
Sbjct:   242 ECVNPKD-HDKPIQQVIAEMTDGGVDRSVECTGSVQAMIQAFECVHDGWGVAVLVGVPSK 300

Query:   306 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 365
                        L+  + L G+ FG  K K+DIP ++++YM+KELEL+KF+TH + F EIN
Sbjct:   301 DDAFKTHPMNFLNE-RTLKGTFFGNYKPKTDIPGVVEKYMNKELELEKFITHTVPFSEIN 359

Query:   366 SAFDLLIKGKCLRCVIWMG 384
              AFD ++KG+ +RC+I MG
Sbjct:   360 KAFDYMLKGESIRCIITMG 378

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045333 "cellular respiration" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0001666 "response to hypoxia" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS;IMP

ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 162/374 (43%), Positives = 229/374 (61%)

Query:    10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
             T GK I+C+AA+A   G+PL I+EV V PP +HEVRV+I  T +CH+D       D   +
Sbjct:     3 TTGKVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDAYTLSGSDPEGL 62

Query:    70 FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
             FP ILGHE                     IP ++  C EC  C++ K NLC         
Sbjct:    63 FPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQGQ 122

Query:   130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +  D TSRF   +G+ + HF+  S+FSEYTV+    + KVD   P ++ CLL CG+STG
Sbjct:   123 GLMPDNTSRFT-CKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGISTG 181

Query:   190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
              GAA  TA VE GST  +FGLG++GLAV  G +  GATRIIG+DV  +KFEI K+FG TE
Sbjct:   182 YGAAINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFEIAKKFGATE 241

Query:   250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
             FVN K+     + +++++TDGG DY FEC+G   +++ A   C KGWG ++++GV   G 
Sbjct:   242 FVNPKDHSKPIQEVLVELTDGGVDYSFECIGNVGIMRAALEACHKGWGTSVIIGVAGAGQ 301

Query:   308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
             ++S   F+++ +G+   G+ FGG K+   +P L+  YM+K+L +D+FVTH + F +IN A
Sbjct:   302 EISTRPFQLV-TGRTWKGTAFGGWKSVESVPKLVNDYMNKKLMVDEFVTHTLPFAQINEA 360

Query:   368 FDLLIKGKCLRCVI 381
             FDL+  GK +R V+
Sbjct:   361 FDLMHAGKSIRAVL 374

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2035619 AT1G32780 [Arabidopsis thaliana (taxid:3702)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 170/385 (44%), Positives = 234/385 (60%)

Query:     9 KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFP 67
             +T GK I C+AA+   P  PLVI E+ VDPP   EVRV+I+ +S+CH+D+  W    +  
Sbjct:     3 ETQGKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAE 62

Query:    68 AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF---P 124
               FPRILGHEA+                   IP F  +C EC  C+ ++ NLC  +   P
Sbjct:    63 RAFPRILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVDP 122

Query:   125 FK---ISPWMPRDQTSRFKD---LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR 178
              K   ++    R  T+  KD    + + I+HF++ S+F+EYTVLD A VVK+DP  P  +
Sbjct:   123 MKRVMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQ 182

Query:   179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
               LLSCGVSTGVGAAW  ANV+ G +  +FGLGS+GLAVAEGAR  GA+RIIGVD  + K
Sbjct:   183 MSLLSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARGASRIIGVDANASK 242

Query:   239 FEIGKRFGVTEFVNSKNCGDK--SIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK 296
             FE GK  GVT+F+N K+       +I ++T GG DY FEC G   +++EA+     GWG 
Sbjct:   243 FEKGKLMGVTDFINPKDLTKPVHQMIREITGGGVDYSFECTGNVDVLREAFLSTHVGWGS 302

Query:   297 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT 356
             T+++G+      L L   E L  G+ + GS+FGG K KS +P   ++ M   ++L+ F+T
Sbjct:   303 TVLVGIYPTPRTLPLHPME-LFDGRRITGSVFGGFKPKSQLPNFAQQCMKGVVKLEPFIT 361

Query:   357 HEMKFEEINSAFDLLIKGKCLRCVI 381
             +E+ FE+IN AF LL  GK LRC++
Sbjct:   362 NELPFEKINDAFQLLRDGKSLRCIL 386

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|J9PA83 ADH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 154/373 (41%), Positives = 227/373 (60%)

Query:    11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
             A + I+C+AA+A   G+PL I+EV V PP +HEVR++II T++CH+D       D    F
Sbjct:     2 ANQVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSF 61

Query:    71 PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
             P ILGHE                     IP ++  C EC  C + K NLC          
Sbjct:    62 PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121

Query:   131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
             +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct:   122 LMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 180

Query:   191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
             GAA  TA VE GST  +FGLG +GLA   G ++ GA+RIIGVD+  +KF   K FG +E 
Sbjct:   181 GAALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASEC 240

Query:   251 VNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 308
             +N ++     + ++I+MTDGG DY FEC+G   +++ A   C KGWG ++++GV   G +
Sbjct:   241 INPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVIVGVAASGEE 300

Query:   309 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF 368
             ++   F+++ +G++  G+ FGG K+   +P L+  YM +++++D+FVTH + F++IN AF
Sbjct:   301 IATRPFQLV-TGRVWKGTAFGGWKSVESVPKLVSEYMSRKIKVDEFVTHSLSFDQINEAF 359

Query:   369 DLLIKGKCLRCVI 381
             DLL  GK +R V+
Sbjct:   360 DLLHAGKSIRTVV 372

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PLM5 F1PLM5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 153/369 (41%), Positives = 225/369 (60%)

Query:    15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
             I+C+AA+A   G+PL I+EV V PP +HEVR++II T++CH+D       D    FP IL
Sbjct:     8 IKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPVIL 67

Query:    75 GHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             GHE                     IP ++  C EC  C + K NLC          +  D
Sbjct:    68 GHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPD 127

Query:   135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
              TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG GAA 
Sbjct:   128 GTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAL 186

Query:   195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
              TA VE GST  +FGLG +GLA   G ++ GA+RIIGVD+  +KF   K FG +E +N +
Sbjct:   187 NTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASECINPQ 246

Query:   255 NCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 312
             +     + ++I+MTDGG DY FEC+G   +++ A   C KGWG ++++GV   G +++  
Sbjct:   247 DFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVIVGVAASGEEIATR 306

Query:   313 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 372
              F+++ +G++  G+ FGG K+   +P L+  YM +++++D+FVTH + F++IN AFDLL 
Sbjct:   307 PFQLV-TGRVWKGTAFGGWKSVESVPKLVSEYMSRKIKVDEFVTHSLSFDQINEAFDLLH 365

Query:   373 KGKCLRCVI 381
              GK +R V+
Sbjct:   366 AGKSIRTVV 374

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P19854	ADHX_HORSE	1, ., 1, ., 1, ., 2, 8, 4	0.4498	0.9480	0.9759	yes	no
P12711	ADHX_RAT	1, ., 1, ., 1, ., 2, 8, 4	0.4373	0.9636	0.9919	yes	no
P11766	ADHX_HUMAN	1, ., 1, ., 1, ., 2, 8, 4	0.4423	0.9584	0.9866	yes	no
Q17335	ADHX_CAEEL	1, ., 1, ., 1, ., 2, 8, 4	0.4105	0.9662	0.9687	yes	no
P46415	ADHX_DROME	1, ., 1, ., 1, ., 2, 8, 4	0.4281	0.9610	0.9762	yes	no
Q3ZC42	ADHX_BOVIN	1, ., 1, ., 1, ., 2, 8, 4	0.4423	0.9584	0.9866	yes	no
P32771	FADH_YEAST	1, ., 1, ., 1, ., -	0.4375	0.9818	0.9792	yes	no
Q9FH04	ADHL7_ARATH	1, ., 1, ., 1, ., 1	0.7349	0.9792	0.9666	yes	no
P28474	ADHX_MOUSE	1, ., 1, ., 1, ., 2, 8, 4	0.4266	0.9636	0.9919	yes	no
Q54TC2	ADHX_DICDI	1, ., 1, ., 1, ., 2, 8, 4	0.4562	0.9610	0.9762	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
4th Layer	1.1.1.1	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	385
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	0.0
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-159
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-156
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-150
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	1e-140
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	1e-132
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	1e-131
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-124
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	1e-123
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	1e-123
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	5e-87
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	2e-82
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	1e-81
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	4e-66
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	5e-58
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	1e-54
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	3e-53
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	6e-50
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	6e-46
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	2e-43
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	6e-43
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	7e-43
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	9e-40
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	2e-39
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	3e-39
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	3e-38
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	1e-37
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	5e-37
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	8e-37
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	2e-36
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	5e-35
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	2e-34
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	8e-34
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	1e-33
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-32
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	5e-32
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	2e-31
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	1e-30
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	2e-29
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	3e-29
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	9e-29
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	2e-28
cd05281	341	cd05281, TDH, Threonine dehydrogenase	1e-27
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	8e-27
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	6e-25
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	9e-25
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	6e-24
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	9e-24
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	1e-23
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	1e-23
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	3e-22
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	4e-22
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	2e-21
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	4e-21
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	1e-20
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	2e-20
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	2e-20
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	1e-18
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	4e-18
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	5e-18
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	6e-18
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	3e-17
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	6e-17
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	1e-16
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	6e-14
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	2e-12
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	3e-12
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	5e-12
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	7e-12
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	9e-12
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	1e-11
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	7e-11
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	1e-10
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	2e-10
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	2e-10
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	3e-10
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	3e-10
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	1e-09
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	1e-09
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	3e-09
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	1e-08
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	2e-08
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	3e-08
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	9e-08
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	2e-07
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	3e-07
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	3e-07
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	2e-06
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	1e-04
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	3e-04
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	6e-04
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	7e-04
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	7e-04
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	0.001
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	0.002
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	0.002
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	0.002

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  567 bits (1464), Expect = 0.0
 Identities = 196/371 (52%), Positives = 255/371 (68%), Gaps = 5/371 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I C+AA+A   G+PLVI+EV V PP + EVR++I+ TSLCH+DV FW+ K    +FPRIL
Sbjct: 1   ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRIL 60

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW-MPR 133
           GHEA G+VESVGE V  +  GD V+P F  +C EC  C+S+K N+C           M  
Sbjct: 61  GHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMIN 120

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
           D  SRF    G+ I+HFV  S+FSEYTV+ +  V K++P  P ++ CLLSCGVSTG+GAA
Sbjct: 121 DGKSRFSI-NGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAA 179

Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
           W  A V+ GSTV IFGLG++GLAVAEGAR+ GA+RIIGVD+   KFE  K+FGVTEFVN 
Sbjct: 180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNP 239

Query: 254 KNCGDK--SIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 311
           K+       +I +MT GG DY FEC G    +  A+ C   GWG T++LGV    +  S 
Sbjct: 240 KDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFST 299

Query: 312 SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL 371
               +L+ G+ L G+LFGG K K+D+P L+++YM KELEL+KF+THE+ F EIN AFDLL
Sbjct: 300 HPMNLLN-GRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLL 358

Query: 372 IKGKCLRCVIW 382
           +KG+CLRC++ 
Sbjct: 359 LKGECLRCILH 369

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  450 bits (1160), Expect = e-159
 Identities = 182/370 (49%), Positives = 252/370 (68%), Gaps = 9/370 (2%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I+C+AA+A   G+PLVI+E+ V PP ++EVR++++ TS+CH+D+   +      +FP IL
Sbjct: 1   IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGF-KATLFPVIL 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  G+VESVGE V  +  GD VIP F+  C EC  CRS K NLC  +    S  MP D
Sbjct: 60  GHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMP-D 118

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
            TSRF   +G+ I+HF+  S+FS+YTV+D  +V K+DP  P    CLL CG STG GAAW
Sbjct: 119 GTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAW 177

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
            TA VE GSTV +FGLG++GL+   GA++ GA+RIIGVD+  +KFE  K FG T+F+N K
Sbjct: 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK 237

Query: 255 NCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 311
           +  DK +   I +MT GG DY FEC G A L+ EA    + GWG ++V+GV  PG++LS+
Sbjct: 238 DS-DKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGV-PPGAELSI 295

Query: 312 SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL 371
             F+++  G+   GS FGG K++SD+P L+ +YM+K+ +LD+ +TH + FEEIN  FDL+
Sbjct: 296 RPFQLI-LGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLM 354

Query: 372 IKGKCLRCVI 381
             G+C+R VI
Sbjct: 355 KSGECIRTVI 364

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  444 bits (1145), Expect = e-156
 Identities = 176/376 (46%), Positives = 250/376 (66%), Gaps = 18/376 (4%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I C+AA+A   G+PL I+EV V PP + EVR++I+ T +CH+D       D   +FP IL
Sbjct: 1   ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVIL 60

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW---- 130
           GHE  G+VESVGE V  V  GD VIP +  +C EC  C+S K NLC     KI       
Sbjct: 61  GHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQ----KIRATQGKG 116

Query: 131 -MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVL-DIAHVVKVDPTVPPNRACLLSCGVST 188
            MP D TSRF   +G+ I+HF+  S+FSEYTV+ +I+ V K++P  P ++ CLL CGV+T
Sbjct: 117 LMP-DGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEIS-VAKINPEAPLDKVCLLGCGVTT 173

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
           G GA   TA VE GSTV +FGLG++GLAV +GA+  GA+RIIG+D+  +KFE+ K+FG T
Sbjct: 174 GYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGAT 233

Query: 249 EFVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 305
           + VN K+  DK I   +++MTDGG DY FEC+G   +++ A   C KGWG ++++GV   
Sbjct: 234 DCVNPKDH-DKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAA 292

Query: 306 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 365
           G ++S   F+ L +G++  G+ FGG K++S +P L++ YM  ++++D+F+TH M  +EIN
Sbjct: 293 GQEISTRPFQ-LVTGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEIN 351

Query: 366 SAFDLLIKGKCLRCVI 381
            AFDL+  GK +R V+
Sbjct: 352 EAFDLMHAGKSIRTVV 367

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  428 bits (1101), Expect = e-150
 Identities = 192/379 (50%), Positives = 252/379 (66%), Gaps = 10/379 (2%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPA 68
           T GK I C+AA+A  PGEPLV++E+ VDPP   EVR++I+ TS+CH+D++ WK   +   
Sbjct: 4   TQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQR 63

Query: 69  VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF---PF 125
            +PRILGHEA G+VESVGE V+ +  GD VIP F  +C +C  C+  K NLC  +   PF
Sbjct: 64  AYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPF 123

Query: 126 KISPWMPRDQTSRFKDLR-GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 184
           K    M  D  +RF     G+ I+HF++ S+F+EYTVLD A VVK+DP  P  +  LLSC
Sbjct: 124 KSV--MVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSC 181

Query: 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
           GVSTGVGAAW TANV+ GS+V IFGLG++GLAVAEGAR  GA++IIGVD+  EKFE GK 
Sbjct: 182 GVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241

Query: 245 FGVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 302
            G+T+F+N K+        I +MT GG DY FEC G   +++EA+     GWG T++LG+
Sbjct: 242 MGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGI 301

Query: 303 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 362
                 L L   E L  G+ + GS+FG  K KS +P L K+ M   + LD F+THE+ FE
Sbjct: 302 HPTPKMLPLHPME-LFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFE 360

Query: 363 EINSAFDLLIKGKCLRCVI 381
           +IN AF LL  GK LRC++
Sbjct: 361 KINEAFQLLEDGKALRCLL 379

Length = 381

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  403 bits (1037), Expect = e-140
 Identities = 182/371 (49%), Positives = 253/371 (68%), Gaps = 7/371 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I CRAA+A   GE LV++EV V PP   E+R++++ TSLC SD++ W+ +   A+FPRI 
Sbjct: 11  ITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ---ALFPRIF 67

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHEA G+VES+GE V    +GD V+  F  +C  C  C S K N+C     +    M  D
Sbjct: 68  GHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSD 127

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
           Q +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+ G+GAAW
Sbjct: 128 QKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAW 186

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
             A+V  GS+VVIFGLG++GL+VA+GA+L GA++IIGVD+  EK E  K FGVT+F+N  
Sbjct: 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPN 246

Query: 255 NCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 312
           +  +  + +I  MT GGADY FECVG   +   A   C  GWG T+ LGV +   ++S +
Sbjct: 247 DLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVS-A 305

Query: 313 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 372
            + +  SG+ L GSLFGG K KSD+P L+ +YM+KE+ +D+F+TH + F+EIN AF+L+ 
Sbjct: 306 HYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMR 365

Query: 373 KGKCLRCVIWM 383
           +GKCLRCVI M
Sbjct: 366 EGKCLRCVIHM 376

Length = 378

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  382 bits (984), Expect = e-132
 Identities = 166/368 (45%), Positives = 228/368 (61%), Gaps = 5/368 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           ++ RAA+A   G+PL I+EV +DPP + EV VRI  T +CH+D       D P  FP +L
Sbjct: 1   MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDD-PEGFPAVL 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  G+VE+VGE V  V  GD VI  F  +C +C  C S K NLC A           D
Sbjct: 60  GHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPD 119

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
            T+R     G  ++H++  S+F+EYTV+    +VK+DP  P  +ACLL CGV+TG+GA  
Sbjct: 120 GTTRLSG-NGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVV 178

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
            TA VE G TV +FGLG +GLA  +GA+  GA RII VD+  EK E+ K+FG T FVN K
Sbjct: 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPK 238

Query: 255 NCGD-KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 313
              D    I+++TDGGADY FECVG   ++++A     +  G ++++GV   G ++S   
Sbjct: 239 EVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIGVAGAGQEISTRP 297

Query: 314 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 373
           F+ L +G++  GS FGG + +SDIP L+  YM  +L LD+ VTH +  E+IN AFDL+ +
Sbjct: 298 FQ-LVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHE 356

Query: 374 GKCLRCVI 381
           GK +R VI
Sbjct: 357 GKSIRSVI 364

Length = 366

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  380 bits (977), Expect = e-131
 Identities = 162/375 (43%), Positives = 226/375 (60%), Gaps = 7/375 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+   P +P  I+E+ V PP +HEVR++I+ T +C SD      K     
Sbjct: 1   TAGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGK-LVTP 59

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA G+VESVGE V  V  GD VIP F+  C +C  C + + NLC         
Sbjct: 60  FPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQ 119

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            + +D TSRF   +G+ IHHF+  S+FSEYTV+D   V K+D   P  + CL+ CG STG
Sbjct: 120 GLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTG 178

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA V  GST  +FGLG +GL+   G +  GA+RII VD+  +KF   K  G TE
Sbjct: 179 YGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATE 238

Query: 250 FVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
            +N ++   K I   + +MTDGG D+ FE +G    ++ A A C +G+G ++++GV    
Sbjct: 239 CINPQDY-KKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSS 297

Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 366
             LS++   +L +G+   G++FGG K+K  +P L+  YM K+  LD  +TH + FE+IN 
Sbjct: 298 QNLSINPMLLL-TGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINE 356

Query: 367 AFDLLIKGKCLRCVI 381
            FDLL  GK +R V+
Sbjct: 357 GFDLLRSGKSIRTVL 371

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  362 bits (932), Expect = e-124
 Identities = 154/369 (41%), Positives = 226/369 (61%), Gaps = 9/369 (2%)

Query: 17  CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           C+AA+    G+PL I+E+ V PP + EVR++++ T +CH+D+     K  P   P ILGH
Sbjct: 1   CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKL-PTPLPVILGH 59

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS-AFPFKISPWMPRDQ 135
           E  G+VES+G  V  +  GD VIP F   C +C  C + + NLCS +        M  D 
Sbjct: 60  EGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMS-DG 118

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
           TSRF   +G+ IHHF+  S+F+EYTV+    + K+DP  P  + CL+ CG STG GAA  
Sbjct: 119 TSRFT-CKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVN 177

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           TA V  GST  +FGLG +GL+V  G +  GA+RII VD+  +KFE  K+ G TE +N ++
Sbjct: 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRD 237

Query: 256 CGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 312
             DK I   + +MTDGG DY FE +G A  +++A    R G G ++V+GV   G++ +L 
Sbjct: 238 -QDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLD 296

Query: 313 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 372
             ++L +G+ + G++FGG K+K  +P L+  Y  K+  LD+ +TH + FEEIN  FDL+ 
Sbjct: 297 PNDLL-TGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMR 355

Query: 373 KGKCLRCVI 381
            G+ +R ++
Sbjct: 356 SGESIRTIL 364

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  359 bits (922), Expect = e-123
 Identities = 172/369 (46%), Positives = 238/369 (64%), Gaps = 6/369 (1%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           RAA+A A G+PL I+EV V+ P   EV VRI+ T +CH+D       D   VFP ILGHE
Sbjct: 3   RAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHE 62

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             G+VE+VGE V  V  GD VIP + A+C EC  C S K NLC A        +  D TS
Sbjct: 63  GAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTS 122

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           RF    G+ I+H++  S+FSEYTV+    + K++P  P    CLL CGV+TG+GA   TA
Sbjct: 123 RFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTA 181

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
            VE G TV +FGLG IGL+V +GAR+  A+RII +D+   KFE+ K+ G T+ VN  +  
Sbjct: 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPND-Y 240

Query: 258 DKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF 314
           DK I   I+++TDGG DY FEC+G  ++++ A  CC KGWG++I++GV   G ++S   F
Sbjct: 241 DKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPF 300

Query: 315 EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG 374
           + L +G++  GS FGG+K ++++P ++++YM  E+ LD FVTH M  E+IN AFDL+ +G
Sbjct: 301 Q-LVTGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEG 359

Query: 375 KCLRCVIWM 383
           K +R VI  
Sbjct: 360 KSIRTVIHY 368

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  358 bits (922), Expect = e-123
 Identities = 159/365 (43%), Positives = 207/365 (56%), Gaps = 5/365 (1%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           RAA+    G+PL I+EV +D P   EV VRI    LCHSD+      D PA  P +LGHE
Sbjct: 2   RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVT-GDLPAPLPAVLGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             GVVE VG  V GV  GD V+  ++  C  C  C   + NLC      I      D T 
Sbjct: 61  GAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDL-GAGILGGQLPDGTR 119

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           RF    GE +     + +F+EYTV+  A VVK+D  +P +RA LL CGV+TGVGA   TA
Sbjct: 120 RF-TADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTA 178

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
            V  G TV + G G +GL   +GAR+ GA+RII VD + EK E+ +RFG T  VN+    
Sbjct: 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDD 238

Query: 258 DKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV 316
               + D+TDG GADY FE VG A+ +++A A  RKG G  +V+G+  PG  +SL + E+
Sbjct: 239 AVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGETVSLPALEL 297

Query: 317 LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC 376
             S K L GSL+G    + DIP LL  Y    L+LD+ VT     +EIN AF  ++ G+ 
Sbjct: 298 FLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGEN 357

Query: 377 LRCVI 381
            R VI
Sbjct: 358 ARGVI 362

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  267 bits (685), Expect = 5e-87
 Identities = 127/369 (34%), Positives = 191/369 (51%), Gaps = 7/369 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           ++  AA+   PG P V+++V +D P   EV VRI+ T +CH+D+   +    P   P +L
Sbjct: 1   MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVV-RDGGLPTPLPAVL 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC-SAFPFKISPWMPR 133
           GHE  GVVE+VG  V G+  GD V+  F A C EC  C S     C + FP   S   P 
Sbjct: 60  GHEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRP- 117

Query: 134 DQTSRFKDLRGETIH-HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
           D ++      G  +H HF   SSF+ Y V+   +VVKVD  VP      L CG+ TG GA
Sbjct: 118 DGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGA 177

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
                    GS++ +FG G++GLA    A++ G T II VD++  + E+ K  G T  +N
Sbjct: 178 VLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVIN 237

Query: 253 SKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 312
            K     + I ++T GG DY  +  G+ +++++A        G   ++G   PG++++L 
Sbjct: 238 PKEEDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEVTLD 296

Query: 313 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 372
             ++L SGK + G + G    +  IP L++ Y   +   DK VT    FE+IN A     
Sbjct: 297 VNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTF-YPFEDINQAIADSE 355

Query: 373 KGKCLRCVI 381
            GK ++ V+
Sbjct: 356 SGKVIKPVL 364

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  256 bits (655), Expect = 2e-82
 Identities = 136/372 (36%), Positives = 190/372 (51%), Gaps = 11/372 (2%)

Query: 18  RAAIATAPG--------EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           RAA+    G         PLVI+EV +DPP   EV V+I    LCHSD++     D P  
Sbjct: 2   RAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVIN-GDRPRP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHEA GVV  VGE V  +  GD V+  F+  C  C  C   +  LC         
Sbjct: 61  LPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGA 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                   R + LRG  I+H + VS+F+EY V+    VVK+D  VP   A L  C V TG
Sbjct: 121 GTLLSGGRRLR-LRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTG 179

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           VGA   TA V  G +V + GLG +GL+   GA   GA++++ VD+  +K  + +  G T 
Sbjct: 180 VGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA 239

Query: 250 FVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 309
            VN+ +      + ++T GG DY FE  G    ++ AY   R+G G T+  G+  P ++L
Sbjct: 240 TVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARL 298

Query: 310 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 369
           S+ +  ++   + L GS  G    + DIP  L  Y+   L +DK +TH +  +EIN  FD
Sbjct: 299 SVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFD 358

Query: 370 LLIKGKCLRCVI 381
            L  G+ +R VI
Sbjct: 359 RLAAGEAVRQVI 370

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  253 bits (649), Expect = 1e-81
 Identities = 130/371 (35%), Positives = 200/371 (53%), Gaps = 13/371 (3%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK--DFPA-VFPRIL 74
           +AA+   PG+P  ++E+ +D P + EV V+++ + LCHSD     +   D P   +P + 
Sbjct: 3   KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSD---EHLVTGDLPMPRYPILG 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  GVV  VG  V GV  GD V+  F+  C  C  C +   NLC      ++     D
Sbjct: 60  GHEGAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISD 119

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
            T RF    G+ +     + +FSEYTV+  A VVK+D  +P ++ACL+ CGV TG G+A 
Sbjct: 120 GTYRFH-ADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAV 178

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
             A+V  G TVV+ G+G +G+   +GA + GA ++I VD +  K E   +FG T    S 
Sbjct: 179 NIADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATHAFASM 238

Query: 255 NCGDKSIIIDMTDG-GADYCFECVGLA--SLVQEAYACCRKGWGKTIVLGVDQPG-SQLS 310
                 ++ ++T+G GAD     VG      + EA +  RKG G+ +V G+       + 
Sbjct: 239 EEA-VQLVRELTNGQGADKTIITVGEVDGEHIAEALSATRKG-GRVVVTGLGPMADVDVK 296

Query: 311 LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 370
           ++ FE+    K L G+LFGG   ++DIP LL+ Y   +L+LD+ +T     ++IN  +  
Sbjct: 297 VNLFELTLLQKELQGTLFGGANPRADIPRLLELYRAGKLKLDELITRTYTLDQINEGYQD 356

Query: 371 LIKGKCLRCVI 381
           ++ GK +R VI
Sbjct: 357 MLDGKNIRGVI 367

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  213 bits (544), Expect = 4e-66
 Identities = 121/365 (33%), Positives = 179/365 (49%), Gaps = 12/365 (3%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           R  IA + G P+ ++ ++V  P   EV V I    +CH+D+ + +       FP +LGHE
Sbjct: 3   RGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHY-REGGINDEFPFLLGHE 61

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
           A GVVE+VGE V  V  GD V+ ++ A C +C  C+  +   C         +   + T 
Sbjct: 62  AAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYC---------FDTHNATQ 112

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +     G  +   + + +F+E T++      KVDP   P  A LL CGV  G+GAA  T 
Sbjct: 113 KMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTG 172

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
            V+ G +V + G G +G A   GA L GA++II VD+   K E  + FG T  VNS    
Sbjct: 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTD 232

Query: 258 DKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV 316
               I  +T G GAD   + VG     ++A+   R   G  +++GV  P   L L   +V
Sbjct: 233 PVEAIRALTGGFGADVVIDAVGRPETYKQAFY-ARDLAGTVVLVGVPTPDMTLELPLLDV 291

Query: 317 LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC 376
              G  L  S +G    + D P+L+  Y+   L LD FVT  +  +++  AFD +  G  
Sbjct: 292 FGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDV 351

Query: 377 LRCVI 381
           LR V+
Sbjct: 352 LRSVV 356

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  192 bits (490), Expect = 5e-58
 Identities = 112/370 (30%), Positives = 177/370 (47%), Gaps = 11/370 (2%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+   P  PL I+E+ V  P   E+ +R+    +CHSD+   K  + P   P +LGHE
Sbjct: 2   KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLK-GELPFPPPFVLGHE 60

Query: 78  AIGVVESVGENVDGVV---EGDVVIPHFLADCTECVGCRSKKGNLC-SAFPFKISPWMPR 133
             G V  VG NV+       GD V+  F+  C +C  C   K NLC   F +        
Sbjct: 61  ISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLY 120

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
           D T+R   L G  ++ + S+   +EY V+    +  +  ++    + +L C   T  GA 
Sbjct: 121 DGTTRLFRLDGGPVYMY-SMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGAL 179

Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
              A+V  G TV + G+G +G +  + A+  GA+ II VDV  EK    K  G T  VN+
Sbjct: 180 KHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNA 239

Query: 254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 312
                 + I ++T G G D   E +G     + A    R G G+ +V+G+   G+   + 
Sbjct: 240 AKEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGATAEIP 298

Query: 313 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 372
              ++  G  ++GS   G + + D+P L+      +L+ +  VTH+ K EEIN A++ L 
Sbjct: 299 ITRLVRRGIKIIGSY--GARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLR 356

Query: 373 KGKC-LRCVI 381
           KG    R ++
Sbjct: 357 KGLIHGRAIV 366

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  180 bits (460), Expect = 1e-54
 Identities = 80/301 (26%), Positives = 116/301 (38%), Gaps = 33/301 (10%)

Query: 43  EVRVRIICTSLCHSDVTFWK-MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPH 101
           EV VR+    LC +D+   +     P   P ILGHE  GVV  VG  V GV  GD V+  
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
               C  C  CR                                 I        F+EY V
Sbjct: 61  PNLGCGTCELCRELCPGGG--------------------------ILGEGLDGGFAEYVV 94

Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 221
           +   ++V +   +    A LL   ++T   A  R   ++ G TV++ G G +GL  A+ A
Sbjct: 95  VPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLA 154

Query: 222 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS 281
           +  GA R+I  D   EK E+ K  G    ++ K    +  +     GGAD   + VG   
Sbjct: 155 KAAGA-RVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE 213

Query: 282 LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILL 341
            + +A    R G G+ +V+G    G         +L     ++GS  G  +   D    L
Sbjct: 214 TLAQALRLLRPG-GRIVVVGGT-SGGPPLDDLRRLLFKELTIIGSTGGTRE---DFEEAL 268

Query: 342 K 342
            
Sbjct: 269 D 269

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  179 bits (457), Expect = 3e-53
 Identities = 98/371 (26%), Positives = 153/371 (41%), Gaps = 27/371 (7%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDV-TFWKMKDFPAVFPRILGH 76
           +AA+    G  + ++E     P   +V +R+  T +C SD+  +   + F      ILGH
Sbjct: 2   KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGH 61

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           E +G V  VG  V G   GD V+      C  C  CR+ + NLC    F     +     
Sbjct: 62  EFVGEVVEVGV-VRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGL----- 115

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                + G           F+EY  +     +   P      A  L+  ++T        
Sbjct: 116 --GGGIDG----------GFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAER 163

Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKN 255
           A V  G TVV+ G G IGL     A+L GA+ +I VD   E+ E+ K   G    VN   
Sbjct: 164 AAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE 223

Query: 256 CGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF 314
               + I+++T G GAD   E VG    + +A    R G G  +V+GV   G  + L + 
Sbjct: 224 DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGVY-GGEDIPLPAG 281

Query: 315 EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG 374
            V+     L GSL      + D    L      +++ +K +TH +  ++   A++L    
Sbjct: 282 LVVSKELTLRGSLRPS--GREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADR 339

Query: 375 K--CLRCVIWM 383
           K   ++ V+  
Sbjct: 340 KEEAIKVVLKP 350

Length = 350

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  170 bits (434), Expect = 6e-50
 Identities = 99/364 (27%), Positives = 160/364 (43%), Gaps = 38/364 (10%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPR 72
            +  +AA+    G+PL I+EV V  P   EV +++    +CH+D+   K  D+P    P 
Sbjct: 1   MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAK-GDWPVPKLPL 59

Query: 73  ILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
           I GHE +G V  VGE V G+  GD V +   +  C EC  CRS   NLC           
Sbjct: 60  IPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLC----------- 108

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                   + + G T         ++EY V+   +VVK+   +    A  L C   T   
Sbjct: 109 ------PNQKITGYTTD-----GGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYR 157

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
           A  + ANV+ G  V + G G +G    + A+  GA  +I +    EK E+ K+ G    +
Sbjct: 158 AL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVI 215

Query: 252 NSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 311
           NS +      +       AD   + VG  + ++ +    R+G G  +++G+   G    L
Sbjct: 216 NSSDSDALEAV----KEIADAIIDTVG-PATLEPSLKALRRG-GTLVLVGLPGGGPIPLL 269

Query: 312 SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL 371
            +F ++     ++GSL G      D+   L      E ++   +   +  +EIN A++ +
Sbjct: 270 PAFLLILKEISIVGSLVGTRA---DLEEALD--FAAEGKIKPEILETIPLDEINEAYERM 324

Query: 372 IKGK 375
            KGK
Sbjct: 325 EKGK 328

Length = 339

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  160 bits (407), Expect = 6e-46
 Identities = 103/369 (27%), Positives = 166/369 (44%), Gaps = 42/369 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A +   PGE L ++EV V  P   EV +++    +C +D+  ++  +F A  P + GHE
Sbjct: 2   KALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYE-GEFGAAPPLVPGHE 59

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             GVV +VG  V G   GD   V P+    C EC  CR  + NLC               
Sbjct: 60  FAGVVVAVGSKVTGFKVGDRVAVDPNIY--CGECFYCRRGRPNLCENL------------ 105

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
                   G T +       F+EY V+    V K+   +    A L   LSC V      
Sbjct: 106 -----TAVGVTRN-----GGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVH----- 150

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
                 ++ G +V++FG G IGL +A+  +L GA+R+   +   EK E+ K+ G TE V+
Sbjct: 151 GLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVD 210

Query: 253 SKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 312
             +  D     +    G D   E  G+   +++A    R+G G  +V GV  P +++S+S
Sbjct: 211 P-SREDPEAQKEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSIS 268

Query: 313 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 372
            FE+      ++GS F           LL+     ++++   V+H +  EE+  A + + 
Sbjct: 269 PFEIFQKELTIIGS-FINPYTFPRAIALLES---GKIDVKGLVSHRLPLEEVPEALEGMR 324

Query: 373 KGKCLRCVI 381
            G  L+ V+
Sbjct: 325 SGGALKVVV 333

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  153 bits (388), Expect = 2e-43
 Identities = 101/351 (28%), Positives = 145/351 (41%), Gaps = 33/351 (9%)

Query: 26  GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVES 84
              LV++EV V  P   EV V++    +CHSD+             P  LGHE  G V  
Sbjct: 11  KGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVE 70

Query: 85  VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG 144
           VG  V     GD V    +  C  C  CR  +GNLC             +Q      + G
Sbjct: 71  VGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLC------------LNQGMPGLGIDG 118

Query: 145 ETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGST 204
                      F+EY V+    +V V   VP  +A + +  V T   A  R   V+ G T
Sbjct: 119 ----------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGET 168

Query: 205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIID 264
           V++ GLG +GL   + A+  GA  +I VD+  EK E+ K  G  E +NS +   K     
Sbjct: 169 VLVIGLGGLGLNAVQIAKAMGAA-VIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAA 227

Query: 265 MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM 324
              GG D  F+ VG     ++A    + G G+ +V+G+ +    + LS          ++
Sbjct: 228 GLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRDKLTVDLSDLIARE--LRII 284

Query: 325 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 375
           GS FGG     D+P +L      +L            +EI    + L KGK
Sbjct: 285 GS-FGGT--PEDLPEVLDLIAKGKL---DPQVETRPLDEIPEVLERLHKGK 329

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  152 bits (386), Expect = 6e-43
 Identities = 97/374 (25%), Positives = 155/374 (41%), Gaps = 43/374 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+   P + + ++EV V  P   EV V++    +C +DV   +        PRILGHE
Sbjct: 2   KAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             G +  VG+ V G   GD V       C EC  C     N+C                 
Sbjct: 61  IAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMC----------------- 103

Query: 138 RFKDLRGETIHHFVSVSSFSEYTV-----LDIAHVVKVDPTVPPNRACL---LSCGVSTG 189
              + +            F+EY       +    V+K+   V    A L   L+C +   
Sbjct: 104 --PNYKKFGNL---YDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCI--- 155

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
              A R A ++ G TV++ G G IGL  A  A+  GA ++I  D+   + E  K+ G   
Sbjct: 156 --NAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADY 213

Query: 250 FVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 308
            +++        + ++TDG GAD      G      +A    RKG G+ +  G    GS 
Sbjct: 214 TIDAAEEDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGST 272

Query: 309 LSLSSFEVLHSGKILMGSLFGGLKAKS-DIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
           +++    ++H  +I   ++ G   A   D    L+     ++++   +TH    E+I  A
Sbjct: 273 VNI-DPNLIHYREI---TITGSYAASPEDYKEALELIASGKIDVKDLITHRFPLEDIEEA 328

Query: 368 FDLLIKGKCLRCVI 381
           F+L   GK L+ VI
Sbjct: 329 FELAADGKSLKIVI 342

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  152 bits (387), Expect = 7e-43
 Identities = 103/379 (27%), Positives = 154/379 (40%), Gaps = 34/379 (8%)

Query: 17  CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
            RAA+ T PG+PL I EV +       V VR+    +C SDV     +      P ILGH
Sbjct: 1   ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGH 60

Query: 77  EAIGVVESVGENVD------GVVEGD-VVIPHFLADCTECVGCRSKKGNLC-SAFPFKIS 128
           E +G V ++G  V        +  GD V        C  C  C       C +   +   
Sbjct: 61  EGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAP-CGRCYRCLVGDPTKCENRKKYGHE 119

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AHVVKVDPTVPPNRACLLSCGVS 187
                        L G           ++E+  L     +V+V   VP   A   +C ++
Sbjct: 120 ASCDDPH------LSG----------GYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALA 163

Query: 188 TGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           T V AA   A  V  G TVV+ G G +GL     A+L GA R+I +D   E+ E+ + FG
Sbjct: 164 T-VLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFG 222

Query: 247 VTEFVN---SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 302
               ++     +   ++I+ D+T G GAD   E  G  + V E     R+G G  +++G 
Sbjct: 223 ADATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGS 281

Query: 303 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 362
             P   + L    ++     ++G               L+R  D+     + VTH    E
Sbjct: 282 VAPAGTVPLDPERIVRKNLTIIGVHNYDPSHLYRAVRFLERTQDRFP-FAELVTHRYPLE 340

Query: 363 EINSAFDLLIKGKCLRCVI 381
           +IN A +L   G  L+ VI
Sbjct: 341 DINEALELAESGTALKVVI 359

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  143 bits (364), Expect = 9e-40
 Identities = 98/360 (27%), Positives = 167/360 (46%), Gaps = 40/360 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A +   PG  L + ++    P + EV VR+    +C SD+  +  ++  A +PRILGHE
Sbjct: 2   KALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHE 60

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             G V  VGE V G+  GD  VV P+    C EC  CR  + N C      +        
Sbjct: 61  LSGEVVEVGEGVAGLKVGDRVVVDPYI--SCGECYACRKGRPNCCE----NLQ------- 107

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                 + G  +H       F+EY V+    ++  +  +  ++A L+   ++ G  A  R
Sbjct: 108 ------VLG--VH---RDGGFAEYIVVPADALLVPE-GLSLDQAALVEP-LAIGAHAVRR 154

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
            A V  G TV++ G G IGL V + A+  GA R+I VD+  E+ E  +  G  + +N  +
Sbjct: 155 -AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD 212

Query: 256 CGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF 314
               + + ++TDG GAD   +  G  + ++EA      G G+ +++G+ +         F
Sbjct: 213 EDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSKGPVTFPDPEF 271

Query: 315 EVLHSGKI-LMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 373
              H  ++ ++GS       + D P ++      +++ +  +TH   FE++  AFDL   
Sbjct: 272 ---HKKELTILGSR---NATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEA 325

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  143 bits (363), Expect = 2e-39
 Identities = 94/346 (27%), Positives = 142/346 (41%), Gaps = 30/346 (8%)

Query: 41  SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIP 100
            H+  VR+  TS+C SD+  ++     A    ILGHE +G V  VG +V  +  GD V  
Sbjct: 25  PHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSV 84

Query: 101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYT 160
             +  C  C  CR      C    +               D               +EY 
Sbjct: 85  PCITFCGRCRFCRRGYHAHCENGLWGWKL-------GNRID------------GGQAEYV 125

Query: 161 VLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA 218
            +  A  ++ K+   +P   A +LS  + TG   A   A ++ GSTV + G G +GL   
Sbjct: 126 RVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAV 184

Query: 219 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECV 277
            GARL GA RII VD   E+ ++ K  G T+ +N KN      I+++T G G D   E V
Sbjct: 185 AGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAV 244

Query: 278 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDI 337
           G     ++A    R G G    +GV            E             G +  ++ +
Sbjct: 245 GFEETFEQAVKVVRPG-GTIANVGVYG-KPDPLPLLGEWFGKNLTFKT---GLVPVRARM 299

Query: 338 PILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVI 381
           P LL    + +++  K +TH    ++I  A+ L       C++ VI
Sbjct: 300 PELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVI 345

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  142 bits (361), Expect = 3e-39
 Identities = 96/368 (26%), Positives = 168/368 (45%), Gaps = 44/368 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A + T PG+ L  +++    P   EV V++    +C SD+  + +       P +LGHE
Sbjct: 2   KALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRY-LGTGAYHPPLVLGHE 59

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             G VE VG  VD +  GD   V P  L  C +C  C+  + +LCS +            
Sbjct: 60  FSGTVEEVGSGVDDLAVGDRVAVNP--LLPCGKCEYCKKGEYSLCSNY------------ 105

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                D  G          +F+EY  +   +++K+   V    A ++    +  + A   
Sbjct: 106 -----DYIGSRRD-----GAFAEYVSVPARNLIKIPDHVDYEEAAMIE-PAAVALHAVRL 154

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
            A + +G TVV+ G G+IGL   +  ++ GA R+I VD+  EK  + +  G  + +N K 
Sbjct: 155 -AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE 213

Query: 256 CGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF 314
             D   + ++T+G GAD   E  G  + +++A A  R G GK +++G+      LS  +F
Sbjct: 214 E-DVEKVRELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAF 271

Query: 315 E-VLHSGKILMGS------LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
           E +L     + GS       F G + ++ + +L    +     ++  +TH +  E+  +A
Sbjct: 272 EKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIK----VEPLITHRLPLEDGPAA 327

Query: 368 FDLLIKGK 375
           F+ L   +
Sbjct: 328 FERLADRE 335

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  140 bits (354), Expect = 3e-38
 Identities = 89/355 (25%), Positives = 150/355 (42%), Gaps = 31/355 (8%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL-GHEAIGVVESVGE 87
           + + E  V  P   EV +R+  + LC SD+ ++        +  ++ GHE  GVV +VG 
Sbjct: 12  VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGP 71

Query: 88  NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI 147
            V     GD V+ +    C  C  CR     LC++                  +  G   
Sbjct: 72  GVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYG-----------WNRDG--- 117

Query: 148 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI 207
                    +EY ++    ++ +   +      LL CG+ T    A R   V    TV++
Sbjct: 118 -------GHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTA-YHALRRVGVSGRDTVLV 169

Query: 208 FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTD 267
            G G +GL     AR  GA  +IGVD   E+ E+ K  G    +NS     + I    + 
Sbjct: 170 VGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSG 229

Query: 268 GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS-SFEVLHSGKILMGS 326
            GAD   EC G  +  + A    R  WG+ +++G    G +L++  S +++   + L+GS
Sbjct: 230 AGADVAIECSGNTAARRLALEAVRP-WGRLVLVGE---GGELTIEVSNDLIRKQRTLIGS 285

Query: 327 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 381
            +  +    +    L R+   +LE+D+ VTH    ++   A+ L  +G+  + V 
Sbjct: 286 WYFSVPDMEECAEFLARH---KLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVF 337

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  138 bits (350), Expect = 1e-37
 Identities = 84/279 (30%), Positives = 116/279 (41%), Gaps = 26/279 (9%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           RAA+    GEPL I EV    P    V V +    +C SD   W+  D     P + GHE
Sbjct: 2   RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHE 61

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             GVV  VGE+V     GD V   F+  C  C  CR+   N+C              Q  
Sbjct: 62  FAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVC------------EHQ-- 107

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHV--VKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                       F    SF+EY  +  A V  V++   V    A  L C  +T   A   
Sbjct: 108 --------VQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVH 159

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
            A V+ G  V + G G +GL+    A   GA R+I VD+  +K E+ +  G    VN+  
Sbjct: 160 QARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASE 218

Query: 256 CGD-KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 293
             D  + + D+T GGA    + +G+    + + A  RK 
Sbjct: 219 VEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKR 257

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  136 bits (346), Expect = 5e-37
 Identities = 95/380 (25%), Positives = 144/380 (37%), Gaps = 49/380 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW------------KMKD 65
           +AA    PG+PL   E+    P   EV V++    +CHSD+  W             + D
Sbjct: 2   KAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDD 61

Query: 66  FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 125
                P +LGHE +G V +VG +   V  GD V+ +    C EC  C +   NLC+    
Sbjct: 62  RGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCA---- 117

Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                         K               ++EY ++  +  +     + P  A  L+C 
Sbjct: 118 --------------KGRALGIFQD----GGYAEYVIVPHSRYLVDPGGLDPALAATLACS 159

Query: 186 VSTGVGAAWRTANVEVGST-VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
             T   A  +     V    VVI G G +GL      +  G   II VD+   K E  K 
Sbjct: 160 GLTAYSAV-KKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA 218

Query: 245 FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 304
            G    VN  +      II    GG D   + V  ++    A+    KG GK +++G+  
Sbjct: 219 AGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKG-GKLVLVGL-- 275

Query: 305 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD--KELELDKFVTHEMKFE 362
            G + +L    +      + GS  G L+        L+  +   K  +L      E    
Sbjct: 276 FGGEATLPLPLLPLRALTIQGSYVGSLEE-------LRELVALAKAGKLKPIPLTERPLS 328

Query: 363 EINSAFDLLIKGKCL-RCVI 381
           ++N A D L  GK + R V+
Sbjct: 329 DVNDALDDLKAGKVVGRAVL 348

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  136 bits (344), Expect = 8e-37
 Identities = 110/385 (28%), Positives = 159/385 (41%), Gaps = 66/385 (17%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM---KDFPAVFPRILG 75
           AA+   PG+ L ++E  +  P   EV VR+    +C SDV ++K     DF    P +LG
Sbjct: 1   AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLG 59

Query: 76  HEAIGVVESVGENVDGVVEGDVV-----IPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           HE+ G V +VG  V  +  GD V     +P     C  C  C+S + NLC    F  +P 
Sbjct: 60  HESAGTVVAVGSGVTHLKVGDRVAIEPGVP-----CRTCEFCKSGRYNLCPDMRFAATP- 113

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVS 187
            P D T                      Y         K+   V      L   LS GV 
Sbjct: 114 -PVDGT-------------------LCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGV- 152

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
                A R A V  G TV++FG G IGL  A  A+  GAT+++  D+   + E  K  G 
Sbjct: 153 ----HACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGA 208

Query: 248 TEFVNSKNCGDKSI---IIDMTDG-GADYCFECVGLASLVQEA-YACCRKGWGKTIVL-G 301
           T  VN +          I ++  G G D   EC G  S +Q A YA    G   T+VL G
Sbjct: 209 THTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGG---TVVLVG 265

Query: 302 VDQPGSQL---SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHE 358
           + +P   L   + S  E+          + G  +  +  P  ++     ++++   +TH 
Sbjct: 266 MGKPEVTLPLSAASLREI---------DIRGVFRYANTYPTAIELLASGKVDVKPLITHR 316

Query: 359 MKFEEINSAFDLLIKGK--CLRCVI 381
              E+   AF+   KGK   ++ VI
Sbjct: 317 FPLEDAVEAFETAAKGKKGVIKVVI 341

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score =  135 bits (342), Expect = 2e-36
 Identities = 103/371 (27%), Positives = 152/371 (40%), Gaps = 52/371 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDV-TFWKMKDFPAVFP-RIL 74
           +A      G+   I++ I    PN  +  VR    + C SDV T W     P      IL
Sbjct: 2   KAFAMLGIGKVGWIEKPIPVCGPN--DAIVRPTAVAPCTSDVHTVWG--GAPGERHGMIL 57

Query: 75  GHEAIGVVESVGENVDGVVEGD-VVIPHFLAD--CTECV-GCRSKKGNLCSAFPFKISPW 130
           GHEA+GVVE VG  V     GD V++P    D        G  S+ G +   + F     
Sbjct: 58  GHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKF----- 112

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYT-VLDI-AHVVKVDPTVPPNRACLLSCGVST 188
                 S FKD              F+EY  V D  A++  +   +   +A +L   +ST
Sbjct: 113 ------SNFKD------------GVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMST 154

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
           G   A   AN+++G TV +FG+G +GL    GARL GA RII V     + E+ K +G T
Sbjct: 155 GFHGAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGAT 213

Query: 249 EFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
           + V+ KN      I+ +T G G D      G     ++A    + G G    +       
Sbjct: 214 DIVDYKNGDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDD 272

Query: 308 QL--SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD----KELELDKFVTH-EMK 360
            L      + V    K + G L  G + +      ++R         ++  K +TH    
Sbjct: 273 YLPIPREEWGVGMGHKTINGGLCPGGRLR------MERLASLIEYGRVDPSKLLTHHFFG 326

Query: 361 FEEINSAFDLL 371
           F++I  A  L+
Sbjct: 327 FDDIEEALMLM 337

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  131 bits (331), Expect = 5e-35
 Identities = 102/375 (27%), Positives = 160/375 (42%), Gaps = 59/375 (15%)

Query: 17  CRAAIATAPGE-PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFPRI 73
            +AA+    GE P  + +V V  P   EV V++  + +CH+D+      D+P     P I
Sbjct: 1   MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALG-DWPVKPKLPLI 59

Query: 74  LGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE  GVV +VG  V G+  GD V +      C +C  CR+    LC            
Sbjct: 60  GGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPN---------- 109

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
           +  +    D             +F+EY + D  +V  +   +   +A  L C   T V  
Sbjct: 110 QKNSGYTVD------------GTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVT-VYK 156

Query: 193 AWRTANVEVGSTVVIFG----LGSIGL--AVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           A + A ++ G  VVI G    LG +G+  A A G       R+I +DV  EK E+ K  G
Sbjct: 157 ALKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGL------RVIAIDVGDEKLELAKELG 210

Query: 247 VTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 305
              FV+ K   D   + ++T G GA         A+  ++A    R G G  + +G+  P
Sbjct: 211 ADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGL-PP 268

Query: 306 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELEL---DKFVTH--EMK 360
           G  + L  F+++  G  ++GSL G  +            + + LE     K   H   + 
Sbjct: 269 GGFIPLDPFDLVLRGITIVGSLVGTRQD-----------LQEALEFAARGKVKPHIQVVP 317

Query: 361 FEEINSAFDLLIKGK 375
            E++N  F+ + +GK
Sbjct: 318 LEDLNEVFEKMEEGK 332

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  129 bits (327), Expect = 2e-34
 Identities = 97/373 (26%), Positives = 158/373 (42%), Gaps = 45/373 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           +AA     G+PL +++V V  P   +V VR+    +CHSD+           P   P  L
Sbjct: 2   KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  G VE VG  VDG+ EGD V+ H    C  C  CR  + N C              
Sbjct: 62  GHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCEN------------ 109

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
             +RF    G           F+EY ++    +VK+   + P  A  L+    T   A  
Sbjct: 110 --ARF---PGIGTD-----GGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVK 159

Query: 195 RTANV-EVGSTVVIF---GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           +     + GSTVV+    GLG I + +    R      +I VD   E  ++ +R G    
Sbjct: 160 KALPYLDPGSTVVVIGVGGLGHIAVQI---LRALTPATVIAVDRSEEALKLAERLGADHV 216

Query: 251 VNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 309
           +N+ +      + ++T G GAD   + VG    +  A     KG G+ +++G    G   
Sbjct: 217 LNASD-DVVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGY---GGHG 271

Query: 310 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 369
            L + +++ +   ++GSL+G     +++  ++      ++   K    +   E+ N A D
Sbjct: 272 RLPTSDLVPTEISVIGSLWGTR---AELVEVVALAESGKV---KVEITKFPLEDANEALD 325

Query: 370 LLIKGKCL-RCVI 381
            L +G+   R V+
Sbjct: 326 RLREGRVTGRAVL 338

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score =  128 bits (325), Expect = 8e-34
 Identities = 103/400 (25%), Positives = 163/400 (40%), Gaps = 80/400 (20%)

Query: 30  VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP-RILGHEAIGVVESVGEN 88
           V D  I DP    +  VR+  T++C SD+  +     P +    ILGHE +GVVE VG  
Sbjct: 17  VPDPKIEDP---TDAIVRVTATAICGSDLHLY-HGYIPGMKKGDILGHEFMGVVEEVGPE 72

Query: 89  VDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI 147
           V  +  GD VV+P  +A C EC  C+    + C             D T+   ++     
Sbjct: 73  VRNLKVGDRVVVPFTIA-CGECFYCKRGLYSQC-------------DNTNPSAEMAKLYG 118

Query: 148 HHFVSVSSFS-----------EYTVLDIAHV--VKVDPTVPPNRACLLSCGVSTGVGAAW 194
           H    +  +S           EY  +  A V   K+   +   +A  LS  + TG  AA 
Sbjct: 119 HAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA- 177

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
             A V+ G TV ++G G +GL  A  A+L GA R+I +D + E+ E+ +     E +N +
Sbjct: 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFE 237

Query: 255 NCGD-KSIIIDMTDG-GADYCFECVGL---------------------ASLVQEAYACCR 291
              D    + ++T G G D C + VG+                        ++EA    R
Sbjct: 238 EVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVR 297

Query: 292 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF--------GGLKAKSDIPILLKR 343
           KG G   ++GV                  K  +G+          G    +  +P LL+ 
Sbjct: 298 KG-GTVSIIGVYGGTVN------------KFPIGAAMNKGLTLRMGQTHVQRYLPRLLEL 344

Query: 344 YMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVI 381
               EL+    +TH +  E+   A+ +  K +  C++ V+
Sbjct: 345 IESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVL 384

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  127 bits (320), Expect = 1e-33
 Identities = 106/370 (28%), Positives = 166/370 (44%), Gaps = 46/370 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRILGH 76
           +AAI   P +PL I+EV    P   EV +++    +C+ D+ FWK   FP   +P ILGH
Sbjct: 2   KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWK-GFFPRGKYPLILGH 60

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           E +G VE VGE V+    GD VI ++   C +C  C S + NLC                
Sbjct: 61  EIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLC---------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                 R    +       F+EY  +    +VK+   V    A L +C V T V A  + 
Sbjct: 105 ------RNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KR 157

Query: 197 ANVEVGSTVVI-FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           A V+ G TV++    G +G+   + A+  GA R+I V    EK +I K  G    ++   
Sbjct: 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGSK 216

Query: 256 CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE 315
             +    +    GGAD   E VG  ++ +   +   KG G+ +++G   P          
Sbjct: 217 FSEDVKKL----GGADVVIELVGSPTIEESLRS-LNKG-GRLVLIGNVTP-------DPA 263

Query: 316 VLHSGKILMG--SLFGGLKA-KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 372
            L  G +++    + G + A K+D+   LK  + KE ++   +   +  E+IN A + L 
Sbjct: 264 PLRPGLLILKEIRIIGSISATKADVEEALK--LVKEGKIKPVIDRVVSLEDINEALEDLK 321

Query: 373 KGKCL-RCVI 381
            GK + R V+
Sbjct: 322 SGKVVGRIVL 331

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  124 bits (315), Expect = 1e-32
 Identities = 85/370 (22%), Positives = 140/370 (37%), Gaps = 66/370 (17%)

Query: 31  IDEVIVDPPNSHEVRVRIICTSLCHSDV-------TFWKMKDFP---------AVFPRIL 74
           ++EV   P    EV++++    +C SD+        F      P            P  L
Sbjct: 14  VEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIF-----IPTEGHPHLTGETAPVTL 68

Query: 75  GHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE  GVV  VG  V G   GD  VV P     C  C  C+    NLC +  F       
Sbjct: 69  GHEFSGVVVEVGSGVTGFKVGDRVVVEPTI--KCGTCGACKRGLYNLCDSLGF------- 119

Query: 133 RDQTSRFKDLRGETIHHFVSVSS--FSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVS 187
                             +      F+EY V+   HV K+   VP   A L   L+    
Sbjct: 120 ----------------IGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWH 163

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
                A R +  + G T ++ G G IGL      +  GA++II  +    + E+ +  G 
Sbjct: 164 -----AVRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA 218

Query: 248 TEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
           T  ++       + +  +T G G D  F+C G+ + +  A    R   G  + + +    
Sbjct: 219 TIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAI--WE 275

Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI-N 365
             +S +  +++   K L GS+      + D   ++      +++ +  +T  +  E+I  
Sbjct: 276 KPISFNPNDLVLKEKTLTGSI---CYTREDFEEVIDLLASGKIDAEPLITSRIPLEDIVE 332

Query: 366 SAFDLLIKGK 375
             F+ LI  K
Sbjct: 333 KGFEELINDK 342

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score =  123 bits (310), Expect = 5e-32
 Identities = 100/335 (29%), Positives = 145/335 (43%), Gaps = 47/335 (14%)

Query: 46  VRIICTSLCHSDVTFWKMKDFPAVFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLA 104
           V+++ T++C +D+   K  D P V P RILGHE +GVVE VG  V     GD V+   ++
Sbjct: 30  VKMLKTTICGTDLHILK-GDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCIS 88

Query: 105 DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH----HFVSV--SSFSE 158
            C  C  CR    + C +       W           + G  I      +V +  +  S 
Sbjct: 89  SCGTCGYCRKGLYSHCES-----GGW-----------ILGNLIDGTQAEYVRIPHADNSL 132

Query: 159 YTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA 218
           Y         K+   V    A +LS  + TG         V+ G TV I G G +GLA  
Sbjct: 133 Y---------KLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAAL 183

Query: 219 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECV 277
             A+L   ++II VD+   + E+ K+ G T  VNS        ++++TDG G D   E V
Sbjct: 184 LTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAV 243

Query: 278 GLASLVQEAYACCRK--GWGKTI-VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAK 334
           G    +   +  C++    G  I  +GV      L L   E L    I + +   GL   
Sbjct: 244 G----IPATFELCQELVAPGGHIANVGVHGKPVDLHL---EKLWIKNITITT---GLVDT 293

Query: 335 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 369
           +  P+LLK     +L+  K VTH  K  EI  A+D
Sbjct: 294 NTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYD 328

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  120 bits (304), Expect = 2e-31
 Identities = 88/368 (23%), Positives = 144/368 (39%), Gaps = 55/368 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+  A G PL  +EV V  P   EV ++I    +CH+D+   +     + +P + GHE
Sbjct: 1   KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            +G V  VG  V+G   GD V +   +  C  C  CR    NLC                
Sbjct: 61  IVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKA------------- 107

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                  G     + +   ++EY V D  + V +   +P  +A  L C   T V +A R 
Sbjct: 108 ----VNTG-----YTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGIT-VYSALRD 157

Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 256
           A    G  V + G+G +G    + AR  G    + +    +K E+ ++ G  E V+S   
Sbjct: 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGAE 216

Query: 257 GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV 316
            D         GGAD     V   +  + A    R+G G+ +++G+       S   F +
Sbjct: 217 LD----EQAAAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLP-ESPPFSPDIFPL 270

Query: 317 LHSGKILMGSLFGGLK---------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
           +   + + GS  GG           A+  +               K +      ++ N A
Sbjct: 271 IMKRQSIAGSTHGGRADLQEALDFAAEGKV---------------KPMIETFPLDQANEA 315

Query: 368 FDLLIKGK 375
           ++ + KG 
Sbjct: 316 YERMEKGD 323

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score =  119 bits (300), Expect = 1e-30
 Identities = 102/365 (27%), Positives = 157/365 (43%), Gaps = 50/365 (13%)

Query: 18  RAAIATAPGE---PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           RA +   PG+     V D VI +P    +  +R++ T +C SD+  ++    P   P  +
Sbjct: 2   RATVIHGPGDIRVEEVPDPVIEEP---TDAVIRVVATCVCGSDLWPYRGVS-PTRAPAPI 57

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE +GVVE VG  V  V  GD VI  F      C  CR+     C              
Sbjct: 58  GHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSC-------------- 103

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH--VVKVDPTVPPNRACL------LSCGV 186
                  + G     FV      EY  + +A   +VKV P  P +   L      LS  +
Sbjct: 104 -------VHGGFWGAFVD-GGQGEYVRVPLADGTLVKV-PGSPSDDEDLLPSLLALSDVM 154

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
            TG  AA  +A V  GSTVV+ G G++GL     A+  GA RII +    ++  + + FG
Sbjct: 155 GTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFG 213

Query: 247 VTEFVNSKNCGDKSI--IIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
            T+ V  +  G++++  + ++T G GAD   ECVG    +++A A  R G G+   +GV 
Sbjct: 214 ATDIVAER--GEEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGV- 269

Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
            P   + L   E+      L G   G    +  +P LL   +   +   +     +  +E
Sbjct: 270 -PHGGVELDVRELFFRNVGLAG---GPAPVRRYLPELLDDVLAGRINPGRVFDLTLPLDE 325

Query: 364 INSAF 368
           +   +
Sbjct: 326 VAEGY 330

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score =  115 bits (291), Expect = 2e-29
 Identities = 92/350 (26%), Positives = 139/350 (39%), Gaps = 41/350 (11%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILGHEAIGVVESV 85
           L ++E     P   EVRVR+    +C SD+ +++   F  V    P +LGHE  GVVE+V
Sbjct: 9   LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAV 68

Query: 86  GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE 145
           G  V G+  G  V  +    C  C  CR+ + NLC    F  S         RF  ++G 
Sbjct: 69  GPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGS-------AMRFPHVQG- 120

Query: 146 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV 205
                     F EY V+D +  V +   +   RA  L+  ++  + A  R  ++  G  V
Sbjct: 121 ---------GFREYLVVDASQCVPLPDGLSLRRAA-LAEPLAVALHAVNRAGDL-AGKRV 169

Query: 206 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDM 265
           ++ G G IG  V   AR  GA  I+  D+      + +  G  E VN        +    
Sbjct: 170 LVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNL---ARDPLAAYA 226

Query: 266 TDGGA-DYCFECVGLASLVQEAYACCRKGWGKTIV----LGVDQPGSQLSLSSFEVLHSG 320
            D G  D  FE  G  + +  A    R   G T+V    LG   P    +L + E+    
Sbjct: 227 ADKGDFDVVFEASGAPAALASALRVVRP--GGTVVQVGMLGGPVPLPLNALVAKEL---- 280

Query: 321 KILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 370
                 L G  +   +    ++      +++   +T     EE   AF L
Sbjct: 281 -----DLRGSFRFDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFAL 325

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score =  114 bits (288), Expect = 3e-29
 Identities = 77/361 (21%), Positives = 127/361 (35%), Gaps = 67/361 (18%)

Query: 23  TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHEAI 79
           T PG    ++E     P   +V VR+    +C SD+  +   +        P   GHE  
Sbjct: 2   TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGW 60

Query: 80  GVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRF 139
           G V ++G  V G+  GD V                                         
Sbjct: 61  GRVVALGPGVRGLAVGDRVA---------------------------------------- 80

Query: 140 KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP--PNRACLLSCGVSTGVGAAWRTA 197
                      +S  +F+EY + D  H V +   +         L C ++      +R  
Sbjct: 81  ----------GLSGGAFAEYDLADADHAVPLPSLLDGQAFPGEPLGCALN-----VFRRG 125

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
            +  G TV + G G IGL   + A   GA R+I +D    +  + +  G TE V   +  
Sbjct: 126 WIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEA 185

Query: 258 DKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG-SQLSLSSFE 315
               + ++T G GAD   E VG    +  A     +  G+ ++ G  Q G   +   +  
Sbjct: 186 IVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQDGPRPVPFQT-- 242

Query: 316 VLHSGKILMGSLFGGLKAK-SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG 374
               G  L+ ++    +     +   +K   D  L+L   +THE   EE+  AF+   + 
Sbjct: 243 WNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRR 302

Query: 375 K 375
            
Sbjct: 303 P 303

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  113 bits (286), Expect = 9e-29
 Identities = 98/361 (27%), Positives = 151/361 (41%), Gaps = 41/361 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRILGH 76
           +A I     +   I+EV    P   EV +++    LC+ D+   +   +P + +P ILGH
Sbjct: 2   KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQ-GFYPRMKYPVILGH 60

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           E +G VE VGENV G   GD V     A    C  CRS +   C                
Sbjct: 61  EVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC---------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
            + +   GE +  F     F+EY  + +  +VKV P V    A ++ C          R 
Sbjct: 105 -KNRLGYGEELDGF-----FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL-RR 157

Query: 197 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           A V+ G TV++ G  G +G+   + A+  GA ++I V     K +I  ++     V SK 
Sbjct: 158 AGVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKYADYVIVGSKF 216

Query: 256 CGD-KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF 314
             + K I      GGAD   E VG  +L +E+      G GK I +G   P    SL   
Sbjct: 217 SEEVKKI------GGADIVIETVGTPTL-EESLRSLNMG-GKIIQIGNVDPSPTYSLRLG 268

Query: 315 EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG 374
            ++     ++G +      K D+   LK  +  E ++   +  E+   EI+ A + L   
Sbjct: 269 YIILKDIEIIGHISAT---KRDVEEALK--LVAEGKIKPVIGAEVSLSEIDKALEELKDK 323

Query: 375 K 375
            
Sbjct: 324 S 324

Length = 334

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score =  113 bits (285), Expect = 2e-28
 Identities = 93/342 (27%), Positives = 142/342 (41%), Gaps = 33/342 (9%)

Query: 44  VRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL 103
           V+V     ++C SD+  ++          +LGHE +G V  VG  V  +  GD V+  F 
Sbjct: 30  VKVTA--AAICGSDLHIYRGHIPSTP-GFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFT 86

Query: 104 ADCTECVGCRSKKGNLCS---AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYT 160
             C EC  CR  +   C+    F +  SP +   Q              +V V  F++ T
Sbjct: 87  IACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQA------------EYVRVP-FADGT 133

Query: 161 VLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEG 220
           +      +K+   +    A LL   + TG   A + A V  G TV + G G +GL     
Sbjct: 134 L------LKLPDGLSDEAALLLGDILPTGYFGA-KRAQVRPGDTVAVIGCGPVGLCAVLS 186

Query: 221 ARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL 279
           A++ GA R+  VD + E+ E     G  E +N ++      + + T+G GAD   E VG 
Sbjct: 187 AQVLGAARVFAVDPVPERLERAAALG-AEPINFEDAEPVERVREATEGRGADVVLEAVGG 245

Query: 280 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPI 339
           A+ +  A+   R   G    +GV     +      +     K L    FG    +S  P 
Sbjct: 246 AAALDLAFDLVRP-GGVISSVGVHTAE-EFPFPGLDAY--NKNLTLR-FGRCPVRSLFPE 300

Query: 340 LLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 381
           LL       L+L+  + H M  EE   A+ L  K K L+ V+
Sbjct: 301 LLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVL 342

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score =  111 bits (279), Expect = 1e-27
 Identities = 97/376 (25%), Positives = 156/376 (41%), Gaps = 60/376 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA---VFPRIL 74
           +A + T  G    + EV V  P   EV ++++  S+C +DV  ++  ++       P I 
Sbjct: 2   KAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIF 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVV-----IPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           GHE  G V  VGE V  V  GD V     I      C +C  CR+   ++C         
Sbjct: 62  GHEFAGEVVEVGEGVTRVKVGDYVSAETHIV-----CGKCYQCRTGNYHVC--------- 107

Query: 130 WMPRDQTSRF--KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
                Q ++    D  G           F+EY V+   ++ K D  +PP  A      + 
Sbjct: 108 -----QNTKILGVDTDG----------CFAEYVVVPEENLWKNDKDIPPEIA-----SIQ 147

Query: 188 TGVGAAWRTANVE--VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
             +G A  T       G +V+I G G IGL     A+  GA+ +I  D    + E+ K+ 
Sbjct: 148 EPLGNAVHTVLAGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM 207

Query: 246 GVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 304
           G    +N +   D   +  +TDG G D   E  G    +++       G G+  +LG+  
Sbjct: 208 GADVVINPRE-EDVVEVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPP 265

Query: 305 PGSQLSLSSFEVLHSGKILMG----SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 360
               + L++  V+  G  + G     +F      S    LLK     +++L   +TH++ 
Sbjct: 266 GPVDIDLNN-LVIFKGLTVQGITGRKMFETWYQVSA---LLK---SGKVDLSPVITHKLP 318

Query: 361 FEEINSAFDLLIKGKC 376
            E+   AF+L+  GKC
Sbjct: 319 LEDFEEAFELMRSGKC 334

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  108 bits (273), Expect = 8e-27
 Identities = 86/382 (22%), Positives = 133/382 (34%), Gaps = 72/382 (18%)

Query: 22  ATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGV 81
           A      L        P    +V ++I    +CHSD+   + +  P  +P + GHE +G+
Sbjct: 5   ARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGI 64

Query: 82  VESVGENVDGVVEGDVVIPHFLAD-CTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFK 140
           V +VG  V     GD V      D C  C  C+S +   C           P+   +   
Sbjct: 65  VVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYC-----------PKGVVTYNG 113

Query: 141 DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE 200
                TI        ++++ V+D   V K+   +    A  L C   T V +  +   V 
Sbjct: 114 KYPDGTITQ----GGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGIT-VYSPLKRNGVG 168

Query: 201 VGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS---EKFEIGKRFGVTEFVN 252
            G  V + G+G +G      A A GA          V   S    K E   + G  EF+ 
Sbjct: 169 PGKRVGVVGIGGLGHLAVKFAKALGAE---------VTAFSRSPSKKEDALKLGADEFIA 219

Query: 253 SKNCGDKS-------IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 305
           +K+            +IID      D             + Y    K  G  +++G   P
Sbjct: 220 TKDPEAMKKAAGSLDLIIDTVSASHDL------------DPYLSLLKPGGTLVLVGA--P 265

Query: 306 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELD-----KFVTHEMK 360
              L +  F ++   K + GSL GG K              + L+       K     + 
Sbjct: 266 EEPLPVPPFPLIFGRKSVAGSLIGGRKE-----------TQEMLDFAAEHGIKPWVEVIP 314

Query: 361 FEEINSAFDLLIKGKCL-RCVI 381
            + IN A + L KG    R V+
Sbjct: 315 MDGINEALERLEKGDVRYRFVL 336

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score =  103 bits (259), Expect = 6e-25
 Identities = 91/373 (24%), Positives = 157/373 (42%), Gaps = 45/373 (12%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF-----WKMKDFPAVFPRI 73
           A + T PG    + EV V  P   EV ++++ TS+C +DV       W         P++
Sbjct: 1   ALMKTKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKP--PQV 58

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           +GHE  G V  +G  V+G+  GD V       C +C  CR  + ++C             
Sbjct: 59  VGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVC------------- 105

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGV 190
                    +   I    +   F+EY V+   ++ K   ++PP  A +   L   V T +
Sbjct: 106 ---------QNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVL 156

Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
                 A    G +V++ G G IGL     A+  GA  +I  D    + E+ K+ G T  
Sbjct: 157 ------AGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYV 210

Query: 251 VNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 309
           VN         + D+TDG G D   E  G    +++       G G+  +LG+  P  ++
Sbjct: 211 VNPFKEDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGL--PPGKV 267

Query: 310 SLS-SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF 368
           ++  + +V+  G  + G    G         + +     +L+LD  +TH+ KF++    F
Sbjct: 268 TIDFTNKVIFKGLTIYG--ITGRHMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGF 325

Query: 369 DLLIKGKCLRCVI 381
           +L+  G+  + ++
Sbjct: 326 ELMRSGQTGKVIL 338

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score =  102 bits (256), Expect = 9e-25
 Identities = 81/291 (27%), Positives = 125/291 (42%), Gaps = 35/291 (12%)

Query: 18  RAAIATAPGEPLV-IDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           +A + T PG   V + EV    P   EV +++    +C SD+  +K    P   P +LGH
Sbjct: 2   KALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGH 61

Query: 77  EAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           E  G +  VG +V+G   GD VV     + C  C  CR    NLC               
Sbjct: 62  EFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPH------------- 108

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
               +   G           F+EY ++    + ++   +    A L   L+  V     A
Sbjct: 109 ----RKGIGTQAD-----GGFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVH----A 155

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII-GVDVISEKFEIGKRFGVTEFV 251
               + +  G TVV+FG G IGL  A+ A+L GAT ++ G +    + ++ K  G    V
Sbjct: 156 VAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADA-V 214

Query: 252 NSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG 301
           N        ++ ++TDG GAD   EC G    +++A    RKG G+ + +G
Sbjct: 215 NGGEEDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVG 264

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  100 bits (251), Expect = 6e-24
 Identities = 79/366 (21%), Positives = 123/366 (33%), Gaps = 59/366 (16%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRIL 74
           +A +    G P  L + EV    P   EV VR+    +   DV   +    P    P I 
Sbjct: 2   KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G EA GVV +VG  V G   GD V                                    
Sbjct: 62  GSEAAGVVVAVGSGVTGFKVGDRVAALGG------------------------------- 90

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                                ++EY V+    +V +   +    A  L     T   A +
Sbjct: 91  ---------------VGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALF 135

Query: 195 RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
             A ++ G TV++ G  G +G A  + A+  GAT +  V   SEK E+ K  G    +N 
Sbjct: 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS-SEKLELLKELGADHVINY 194

Query: 254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 312
           +       + ++T G G D   + VG       + A    G G+ + +G    G  + L+
Sbjct: 195 REEDFVEQVRELTGGKGVDVVLDTVG-GDTFAASLAALAPG-GRLVSIGALSGGPPVPLN 252

Query: 313 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKF---VTHEMKFEEINSAFD 369
              +L     L G   G    ++    L +  +   L   K    +       E  +A  
Sbjct: 253 LLPLLGKRLTLRGVTLGSRDPEALAEALAE--LFDLLASGKLKPVIDRVYPLAEAPAAAA 310

Query: 370 LLIKGK 375
            L+  +
Sbjct: 311 HLLLER 316

Length = 326

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =   99 bits (250), Expect = 9e-24
 Identities = 59/225 (26%), Positives = 87/225 (38%), Gaps = 41/225 (18%)

Query: 18  RAAIATAPG----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAV 69
           +A +   PG     PL + EV V  P   EV +++    +C +D+            P  
Sbjct: 2   KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLP----PPK 57

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKIS 128
            P I GHE +G VE+VG  V     GD V +P   + C EC  CRS + NLC    F   
Sbjct: 58  LPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFT-- 115

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
                          G T+        ++EY V D      +        A  L C    
Sbjct: 116 ---------------GYTVD-----GGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGII 155

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATR 228
           G   A + A ++ G  + ++G G+       +A  +GA +   TR
Sbjct: 156 GYR-ALKLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTR 199

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score =  100 bits (251), Expect = 1e-23
 Identities = 83/383 (21%), Positives = 133/383 (34%), Gaps = 80/383 (20%)

Query: 18  RAAIATAP-GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FPRIL 74
           +AA+ T P G  LV+ +V V  P   EV V++   +L   D   WK +D+  +  +P IL
Sbjct: 2   KAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVD---WKHQDYGFIPSYPAIL 58

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  G V  VG  V     GD V                + G                 
Sbjct: 59  GCDFAGTVVEVGSGVTRFKVGDRV----AGFVHGGNPNDPRNG----------------- 97

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST------ 188
                               +F EY V D     K+   +    A  L  G+ T      
Sbjct: 98  --------------------AFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALF 137

Query: 189 ---GVGAAWRTAN-VEVGSTVVIFGLGS--IGLAVAEGARLCGATRIIGVDVISEK-FEI 241
              G+       +    G  V+I+G GS  +G    + A+L G  ++I     S K F++
Sbjct: 138 QKLGLPLPPPKPSPASKGKPVLIWG-GSSSVGTLAIQLAKLAGY-KVIT--TASPKNFDL 193

Query: 242 GKRFGVTEFV--NSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 299
            K  G       +  +  +   I   T G   Y  +C+      Q       +  G  +V
Sbjct: 194 VKSLGADAVFDYHDPDVVED--IRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLV 251

Query: 300 --LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTH 357
             L V +          + +    +L  ++FG +    +   +  +Y+ + LE  K   H
Sbjct: 252 SLLPVPEET-----EPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPH 306

Query: 358 EMK-----FEEINSAFDLLIKGK 375
            ++      E +    DLL KGK
Sbjct: 307 PVRVVEGGLEGVQEGLDLLRKGK 329

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 98.9 bits (247), Expect = 1e-23
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 20/227 (8%)

Query: 157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216
           +E  V+    +V +   +PP RA L +   +T +      A   +G  V + GLG +GL 
Sbjct: 55  AERVVVPANLLVPLPDGLPPERAALTALA-ATALNGVRD-AEPRLGERVAVVGLGLVGLL 112

Query: 217 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFEC 276
            A+ A+  GA  ++GVD  + + E+ +  G  + V +          ++   GAD   E 
Sbjct: 113 AAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAA------DTADEIGGRGADVVIEA 166

Query: 277 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSG--KILMGSLFGGLKAK 334
            G  S ++ A    R   G+ +++G       L L   E  H     I    ++G  +  
Sbjct: 167 SGSPSALETALRLLRDR-GRVVLVGWYGLKP-LLLG--EEFHFKRLPIRSSQVYGIGRYD 222

Query: 335 SDIPILLKRYMDKELEL------DKFVTHEMKFEEINSAFDLLIKGK 375
                   R +++ L+L      +  +TH + FE+   A+ LL +  
Sbjct: 223 RPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDP 269

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 90.0 bits (224), Expect = 3e-22
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 22/129 (17%)

Query: 42  HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPH 101
            EV VR+    +C SD+  ++ +  P   P ILGHE  G+VE VG  V G+  GD V+ +
Sbjct: 2   GEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVVY 61

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
            L  C +C  CR  + NLC                       G  +        F+EY V
Sbjct: 62  PLIPCGKCAACREGRENLCPN-----------------GKFLGVHLD-----GGFAEYVV 99

Query: 162 LDIAHVVKV 170
           +   ++V +
Sbjct: 100 VPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 95.7 bits (239), Expect = 4e-22
 Identities = 89/384 (23%), Positives = 156/384 (40%), Gaps = 77/384 (20%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF-----WKMKDFPAVFPR 72
           +A +       L + +V V  P  ++V +++  T++C +DV       W  K  P   P 
Sbjct: 2   KALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPV--PM 59

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIP--HFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           ++GHE +G V  VG  V G   GD V    H +  C  C  CR+ + +LC          
Sbjct: 60  VVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIV--CGHCRNCRAGRRHLC---------- 107

Query: 131 MPRDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
                    ++ +G      V V+   +F+EY V+   +V K+   +P + A +      
Sbjct: 108 ---------RNTKG------VGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIFD---- 148

Query: 188 TGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
              G A  TA   ++ VG  V+I G G IG+  A  A+  GA  ++  DV   + E+ ++
Sbjct: 149 -PFGNAVHTALSFDL-VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK 206

Query: 245 FGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
            G T  VN      + ++ ++    G D   E  G  S  ++       G G+  +LG+ 
Sbjct: 207 MGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGI- 264

Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYM-----------DKELELD 352
            P   +++   +V+  G  + G ++G             R M              L+L 
Sbjct: 265 -PPGDMAIDWNKVIFKGLTIKG-IYG-------------REMFETWYKMSALLQSGLDLS 309

Query: 353 KFVTHEMKFEEINSAFDLLIKGKC 376
             +TH    ++    F+ +  G+ 
Sbjct: 310 PIITHRFPIDDFQKGFEAMRSGQS 333

Length = 341

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 88.5 bits (220), Expect = 2e-21
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 213 IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GAD 271
           +GLA  + A+  GA R+I VD   EK E+ K  G    +N ++      + ++T G G D
Sbjct: 2   VGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDEDFVERVRELTGGRGVD 61

Query: 272 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL 331
              +CVG  + +++A    R G    +V         +     ++L     ++GSL GG 
Sbjct: 62  VVIDCVGAPATLEQALELLRPGGRVVVVGLPGGA--PVPFPLRDLLLKELTILGSLGGGR 119

Query: 332 K 332
           +
Sbjct: 120 E 120

Length = 131

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 93.3 bits (232), Expect = 4e-21
 Identities = 98/362 (27%), Positives = 149/362 (41%), Gaps = 52/362 (14%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MK--DFPAVFPRILGHEAIGVVESV 85
           L I    + P   H+VRVR+    +C SDV + K M+  DF    P ++GHE  G++E V
Sbjct: 29  LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEV 88

Query: 86  GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE 145
           G  V  +V GD V       C  C  C+  + NLC    F  +P                
Sbjct: 89  GSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATP---------------- 132

Query: 146 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVG 202
            +H      S +   V       K+   V      +   LS GV      A R AN+   
Sbjct: 133 PVH-----GSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVH-----ACRRANIGPE 182

Query: 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV----NSKNCGD 258
           + V++ G G IGL     AR  GA RI+ VDV  E+  + K+ G  E V    N ++   
Sbjct: 183 TNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVES 242

Query: 259 KSIIIDMTDGGA-DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF--- 314
           +   I    GG  D  F+CVG    +  A    R G GK  ++G+      + L+     
Sbjct: 243 EVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHNEMTVPLTPAAAR 301

Query: 315 EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF--EEINSAFDLLI 372
           EV          + G  + ++  P+ L+     ++++   +TH   F  +E+  AF+   
Sbjct: 302 EV---------DVVGVFRYRNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSA 352

Query: 373 KG 374
           +G
Sbjct: 353 RG 354

Length = 364

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 67/285 (23%), Positives = 112/285 (39%), Gaps = 37/285 (12%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRIL 74
           +A +    G P  L   ++    P   EV VR+   +L H D+   +      +  P IL
Sbjct: 2   KAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHIL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  GVVE+VG  V  V  G  V+ +    C  C  C + + NLC+ +           
Sbjct: 62  GSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQY----------- 110

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                  + GE +        ++EY  +   +++ +   +    A        T    AW
Sbjct: 111 ------GILGEHVDGG-----YAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLT----AW 155

Query: 195 RT----ANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
                 A +  G TV++ G GS +G A  + A+L GAT I       +K E  K  G   
Sbjct: 156 HMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGS-EDKLERAKELGADY 214

Query: 250 FVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKG 293
            ++ +       + ++T   G D   E VG A+  +++     +G
Sbjct: 215 VIDYRKEDFVREVRELTGKRGVDVVVEHVGAATW-EKSLKSLARG 258

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 91.8 bits (228), Expect = 2e-20
 Identities = 87/366 (23%), Positives = 148/366 (40%), Gaps = 56/366 (15%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM-KD----FPAV--FPRILGHEAIGV 81
           L +++V V      E+ +R+    +C SD+  ++  KD    +P +  FP ++GHE  GV
Sbjct: 39  LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGV 98

Query: 82  VESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD 141
           VE  G+NV    +GD V    +  C  C  CRS   N C                   K+
Sbjct: 99  VEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCK----------------NLKE 142

Query: 142 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV---PPNRACLLSCGVS-TGV---GAAW 194
           L       F +  +F+EY  ++  +  +++        ++A      V  T V   G   
Sbjct: 143 L------GFSADGAFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFI 196

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
           R      G+ VV++G G IGLA    A+  GA+++I  ++  E+  + K  G     N  
Sbjct: 197 RGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPT 256

Query: 255 NCGDKSI---IIDMTDG-GADYCFECVGLASLV----QEAYACCRKGWGKTIVLGVDQPG 306
              D      ++++T G GAD   E  G         +++ A      GK + +G  +  
Sbjct: 257 KMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN----GKIVYIG--RAA 310

Query: 307 SQLSLSSFEVLHSGKILMGSLFG--GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 364
           + + L   EVL   +     + G  G       P ++K     ++++ K +T     E I
Sbjct: 311 TTVPL-HLEVLQVRR---AQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPLEGI 366

Query: 365 NSAFDL 370
             A   
Sbjct: 367 MEAIKA 372

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 90.9 bits (226), Expect = 2e-20
 Identities = 76/290 (26%), Positives = 120/290 (41%), Gaps = 40/290 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDV-------TFWKMKDFPAVF 70
           RA +   P +   ++EV V  P   E+ V++    +C  D+       +FW  ++ P   
Sbjct: 2   RAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYV 60

Query: 71  --PRILGHEAIGVVESVGENVD--GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             P I GHE +G V  +GE  +  GV  GD VI   +  C  C  C   +  +C      
Sbjct: 61  KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQK---- 116

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LS 183
                         DL G   +    ++ +  +    I H  KV   +PP  A L   L+
Sbjct: 117 -------------HDLYGFQNNVNGGMAEYMRFPKEAIVH--KVPDDIPPEDAILIEPLA 161

Query: 184 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 243
           C +     A  R AN++    VV+ G G +GL +   ARL    ++I +D+  E+  + +
Sbjct: 162 CALH----AVDR-ANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALAR 216

Query: 244 RFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRK 292
           +FG    +N         I ++T G G D   E  G  S V++     RK
Sbjct: 217 KFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRK 266

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 94/374 (25%), Positives = 154/374 (41%), Gaps = 64/374 (17%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+        V+ E  + P    E  V++    +CH+D+      DF     RILGHE
Sbjct: 2   KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHV-ANGDFGDKTGRILGHE 60

Query: 78  AIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            IG+V+ VG  V  +  GD V I  F   C  C  C + +  LC                
Sbjct: 61  GIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLC---------------- 104

Query: 137 SRFKDLR--GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
              + ++  G T+         +E  ++   + VKV   + P +A  ++C GV+T    A
Sbjct: 105 ---RSVKNAGYTVD-----GGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTT--YKA 154

Query: 194 WRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
            + + ++ G  + I+G G +G LA+     +  A ++I VD+  +K  + K  G    +N
Sbjct: 155 IKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTIN 213

Query: 253 SKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 312
           SK   D + II    GGA          +   +A    R G G+ + +G+  P   + LS
Sbjct: 214 SKRVEDVAKIIQEKTGGAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGL--PPESMDLS 270

Query: 313 SFEVLHSGKILMGSLFG-----------GLKAKSDIPILLKRYMDKELELDKFVTHEMKF 361
              ++  G  ++GSL G           G + K  +P +  R                  
Sbjct: 271 IPRLVLDGIEVVGSLVGTRQDLEEAFQFGAEGKV-VPKVQLR----------------PL 313

Query: 362 EEINSAFDLLIKGK 375
           E+IN  FD + +GK
Sbjct: 314 EDINDIFDEMEQGK 327

Length = 338

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 84.4 bits (209), Expect = 4e-18
 Identities = 74/347 (21%), Positives = 140/347 (40%), Gaps = 41/347 (11%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN 88
           L I+E  +  P + EVRV++    +C SD   ++  +  A +PR++GHE  GV+++VGE 
Sbjct: 12  LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEG 71

Query: 89  VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH 148
           VD    G+ V    +  C  C  C   K N+C++    +   + RD              
Sbjct: 72  VDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSL---VVLGVHRD-------------- 114

Query: 149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV--GSTVV 206
                  FSEY V+   +  ++   +    A +    V     AA  T           +
Sbjct: 115 -----GGFSEYAVVPAKNAHRIPDAIADQYAVM----VEPFTIAANVTGRTGPTEQDVAL 165

Query: 207 IFGLGSIGLAVAEG-ARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDM 265
           I+G G +GL + +    +     +I  D I E+  + K  G    +N+     + +   +
Sbjct: 166 IYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINN---AQEPLGEAL 222

Query: 266 TDGGAD--YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKIL 323
            + G       +     S+++EA         + +++G     S++         +GK L
Sbjct: 223 EEKGIKPTLIIDAACHPSILEEAVTLASPA-ARIVLMGFSSEPSEIVQQGI----TGKEL 277

Query: 324 MGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 370
             S+F      +  P+++       ++ +K +TH   F+ +  A +L
Sbjct: 278 --SIFSSRLNANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIEL 322

Length = 339

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 84.1 bits (208), Expect = 5e-18
 Identities = 71/294 (24%), Positives = 112/294 (38%), Gaps = 53/294 (18%)

Query: 43  EVRVRIICTSLCHSDVTFWKMKDFPAVF-------PRILGHEAIGVVESVGENVDGVVEG 95
           +V V++  + LC SD+        P +F       P  LGHE  G VE+VG  VD +  G
Sbjct: 27  DVLVKVASSGLCGSDI--------PRIFKNGAHYYPITLGHEFSGYVEAVGSGVDDLHPG 78

Query: 96  DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSS 155
           D V    L  C  C  C     +LC+ + F           SR                 
Sbjct: 79  DAVACVPLLPCFTCPECLRGFYSLCAKYDFI---------GSR-------------RDGG 116

Query: 156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 215
            +EY V+   ++  +   +P      +   ++ G+ A       E G  V+I G G+IGL
Sbjct: 117 NAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAFHLAQGCE-GKNVIIIGAGTIGL 174

Query: 216 AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFE 275
              + A   GA  +  +D+ SEK  + K  G  +  NS+         +M+         
Sbjct: 175 LAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSR---------EMSAPQIQSVLR 225

Query: 276 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 329
            +    L+ E       G  +T+ L ++  G +  L+    LH    L  + FG
Sbjct: 226 ELRFDQLILET-----AGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFG 274

Length = 347

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 83.4 bits (207), Expect = 6e-18
 Identities = 83/375 (22%), Positives = 143/375 (38%), Gaps = 68/375 (18%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A   T PG PL + E  V  P   EV +++    +CHSD    +       +PR+ GHE
Sbjct: 2   KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHE 61

Query: 78  AIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            +G +++VGE V     GD V +      C  C  CR                       
Sbjct: 62  VVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACR----------------------- 98

Query: 137 SRFKDLRGETIH----HFVSVSS---FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
                 RG+ +H        V+    ++EY +     + ++   +    A  L C GV+T
Sbjct: 99  ------RGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTT 152

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
               A R +  + G  V + G+G +G LAV + A   G  R + +   S+K ++ ++ G 
Sbjct: 153 --FNALRNSGAKPGDLVAVQGIGGLGHLAV-QYAAKMG-FRTVAISRGSDKADLARKLGA 208

Query: 248 TEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
             ++++        + ++  GGA         A  +           GK ++LG    G 
Sbjct: 209 HHYIDTSKEDVAEALQEL--GGAKLILATAPNAKAISALVGGLAPR-GKLLILGAA--GE 263

Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTH-------EMK 360
            +++S  +++   K + G   G               +D E  L     H          
Sbjct: 264 PVAVSPLQLIMGRKSIHGWPSG-------------TALDSEDTLKFSALHGVRPMVETFP 310

Query: 361 FEEINSAFDLLIKGK 375
            E+ N A+D ++ GK
Sbjct: 311 LEKANEAYDRMMSGK 325

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 81.9 bits (203), Expect = 3e-17
 Identities = 101/385 (26%), Positives = 147/385 (38%), Gaps = 80/385 (20%)

Query: 20  AIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDV--------TFWKMKDFPAVF 70
           AIA  PG+P V    I +P P   EV VR +   +C +D         T    +DF    
Sbjct: 3   AIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDF---- 58

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
             +LGHEA+GVVE VG+   G+  GD+V+P       +C+ CR  + + C          
Sbjct: 59  -LVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCE--------- 107

Query: 131 MPRDQTSRFKDLRGET-IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGV 186
                T  + + RG   +H F       EY V D  ++VKV P++  +   L   LS   
Sbjct: 108 -----TGEYTE-RGIKGLHGF-----MREYFVDDPEYLVKVPPSL-ADVGVLLEPLSV-- 153

Query: 187 STGVGAAWRTANVEVGS--------TVVIFGLGSIGL-----AVAEGARLCGATRIIGVD 233
              V  A   A   V            ++ G G IGL         G  +    R    D
Sbjct: 154 ---VEKAIEQA-EAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR---RD 206

Query: 234 VISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 293
               K +I +  G T +VNS       + +    G  D   E  G+  L  EA       
Sbjct: 207 PPDPKADIVEELGAT-YVNSSKTPVAEVKL---VGEFDLIIEATGVPPLAFEALPALAPN 262

Query: 294 WGKTIVLGVDQPGSQLSLSSFE-----VLHSGKILMGSLFGGLK----AKSDIPILLKRY 344
            G  I+ GV   G +  +   E     VL + K L+GS+    +    A  D+     R+
Sbjct: 263 -GVVILFGVPGGGREFEVDGGELNRDLVLGN-KALVGSVNANKRHFEQAVEDLAQWKYRW 320

Query: 345 MDKELELDKFVTHEMKFEEINSAFD 369
                 L++ +T  +  EE   A  
Sbjct: 321 PGV---LERLITRRVPLEEFAEALT 342

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 80.7 bits (199), Expect = 6e-17
 Identities = 85/375 (22%), Positives = 152/375 (40%), Gaps = 49/375 (13%)

Query: 23  TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FPRILGHEAIG 80
           T PG+P+V   V +    + +V V++    +CH+D++++ M         P  LGHE  G
Sbjct: 5   TEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYM-GVRTNHALPLALGHEISG 63

Query: 81  VVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFK 140
            V   G      +   V++P  +  C EC  C++ +G +C            R Q     
Sbjct: 64  RVIQAGAGAASWIGKAVIVPAVIP-CGECELCKTGRGTIC------------RAQKMPGN 110

Query: 141 DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE 200
           D++G    H V  +      V+D A +      +P     +++  V+T   AA + A ++
Sbjct: 111 DMQGGFASHIVVPAKG--LCVVDEARLAAAG--LPLEHVSVVADAVTTPYQAAVQ-AGLK 165

Query: 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS 260
            G  V++ G G +G  + + A+  GA  ++ +D+  EK E+ K FG    +N K+   + 
Sbjct: 166 KGDLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGFGADLTLNPKDKSAR- 223

Query: 261 IIIDMTDGGADYC------------FECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 308
              ++      +             FEC G     + A +    G G  +V+G     ++
Sbjct: 224 ---EVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMAKTE 279

Query: 309 LSLSSFEVLHSGKILMGSLFGGLKAKSDI-PILLKRYMDKELELDKFV-THEMKFEEINS 366
             LS+    H+  +      G      D  P  L   +D +++L  FV    +  ++I  
Sbjct: 280 YRLSNLMAFHARAL------GNWGCPPDRYPAALDLVLDGKIQLGPFVERRPL--DQIEH 331

Query: 367 AFDLLIKGKCLRCVI 381
            F      K  R  I
Sbjct: 332 VFAAAHHHKLKRRAI 346

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 79.5 bits (197), Expect = 1e-16
 Identities = 67/373 (17%), Positives = 113/373 (30%), Gaps = 87/373 (23%)

Query: 18  RAAIATAPGEPLVIDEV-IVDP-PNSHEVRVRIICTSLCHSDVTF---WKMKDFPAVFPR 72
           +A      G P V++   +  P P   EV V++    +   D+          FP   P 
Sbjct: 2   KAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPL 61

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           I GH+  GVV +VG  V G   GD V                                  
Sbjct: 62  IPGHDVAGVVVAVGPGVTGFKVGDEVF----------------------GMTP------- 92

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
                            F    +++EY V+    +      +    A      +      
Sbjct: 93  -----------------FTRGGAYAEYVVVPADELALKPANLSFEEA----AALPLAGLT 131

Query: 193 AWRT----ANVEVGSTVVIFG-LGSIG-----LAVAEGARLCGATRIIGVDVISEKFEIG 242
           AW+       ++ G TV+I G  G +G     LA A GAR+            +   +  
Sbjct: 132 AWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATAS-------AANADFL 184

Query: 243 KRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 302
           +  G  E ++               GG D   + VG  +L   + A  + G G+  ++ +
Sbjct: 185 RSLGADEVIDYT---KGDFERAAAPGGVDAVLDTVGGETL-ARSLALVKPG-GR--LVSI 237

Query: 303 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 362
             P      +    + +G + +      L         L   ++   +L   V      E
Sbjct: 238 AGPPPAEQAAKRRGVRAGFVFVEPDGEQLAE-------LAELVEAG-KLRPVVDRVFPLE 289

Query: 363 EINSAFDLLIKGK 375
           +   A + L  G 
Sbjct: 290 DAAEAHERLESGH 302

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 71.4 bits (176), Expect = 6e-14
 Identities = 64/269 (23%), Positives = 102/269 (37%), Gaps = 61/269 (22%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFP 71
           +A +    G P  LV++EV  +P    EVR+R+    +   D+      +++K  P + P
Sbjct: 2   KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVK--PPL-P 58

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            + G E  GVVE+VGE V G   GD V           V                     
Sbjct: 59  FVPGSEVAGVVEAVGEGVTGFKVGDRV-----------VA-------------------- 87

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                                   F+E  V+  A V  +   +    A  L     T   
Sbjct: 88  ------------------LTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYH 129

Query: 192 AAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           A  R A ++ G TV++ G  G +GLA  + A+  GA R+I      EK  + +  G    
Sbjct: 130 ALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHV 188

Query: 251 VNSKNCGDKSIIIDMTDG-GADYCFECVG 278
           ++ ++   +  +  +T G G D  ++ VG
Sbjct: 189 IDYRDPDLRERVKALTGGRGVDVVYDPVG 217

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 70/249 (28%), Positives = 106/249 (42%), Gaps = 39/249 (15%)

Query: 18  RAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSD---VTFWKMKDFPAVFPRI 73
           +A +    G E L +++V    P   EV +R+    +   D   +   K+K      P I
Sbjct: 2   KALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVK----PMPHI 57

Query: 74  LGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            G E  GVVE VG++V GV +GD VV+ + + D T C  C S    LC            
Sbjct: 58  PGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGT-CDMCLSGNEMLC------------ 104

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
                     R   I   VS   ++EY V+   ++ K+  ++    A  L     T   A
Sbjct: 105 ----------RNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHA 154

Query: 193 AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
             +TA +  G TVV+FG  G+ G+   + A++ GA  I     +S K +  K FG  E V
Sbjct: 155 L-KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVI----AVSRK-DWLKEFGADEVV 208

Query: 252 NSKNCGDKS 260
           +     +K 
Sbjct: 209 DYDEVEEKV 217

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 62/269 (23%), Positives = 99/269 (36%), Gaps = 58/269 (21%)

Query: 17  CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV---FP 71
            +A +   PG    L ++E+ +  P + EV V++    L   D   WK+  +      +P
Sbjct: 1   MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVD---WKVIAWGPPAWSYP 57

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            + G +  GVV +VG  V G   GD V  H                              
Sbjct: 58  HVPGVDGAGVVVAVGAKVTGWKVGDRVAYH------------------------------ 87

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                S  +              SF+EYTV+D   V+ +  ++    A  L C   T   
Sbjct: 88  ----ASLARG------------GSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQ 131

Query: 192 AAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           A ++   +E G T++I G  G +G    + A+  G  R+I        FE  K  G    
Sbjct: 132 ALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVI-TTCSKRNFEYVKSLGADHV 189

Query: 251 VNSKNCGDKSIIIDMTDG-GADYCFECVG 278
           ++  +      I ++T G G D   + VG
Sbjct: 190 IDYNDEDVCERIKEITGGRGVDAVLDTVG 218

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 66.2 bits (161), Expect = 5e-12
 Identities = 87/338 (25%), Positives = 142/338 (42%), Gaps = 38/338 (11%)

Query: 42  HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IP 100
           ++V V+I+   +CHSD+   K     + +P I GHE +G+   VG+NV    EGD V + 
Sbjct: 32  NDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVG 91

Query: 101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD-LRGETIHHFVSVSSFSEY 159
             +  C  C  C     N C    F  +        SR  D  R +          +S+ 
Sbjct: 92  VIIGSCQSCESCNQDLENYCPKVVFTYN--------SRSSDGTRNQ--------GGYSDV 135

Query: 160 TVLDIAHVVKVDPTVPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG-LAV 217
            V+D   V+ +   +P +  A LL  G++      +     E G  + + GLG +G +AV
Sbjct: 136 IVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAV 195

Query: 218 AEGARLCGATRIIGVDVISEK-FEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFEC 276
             G       R+  +   SEK  E   R G   F+ +    D   + +   G  D+  + 
Sbjct: 196 KIGKAF--GLRVTVISRSSEKEREAIDRLGADSFLVTT---DSQKMKEAV-GTMDFIIDT 249

Query: 277 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSD 336
           V     +   ++  +   GK + LG+  P   L L  F ++   K++ GS  GG+K   +
Sbjct: 250 VSAEHALLPLFSLLKVS-GKLVALGL--PEKPLDLPIFPLVLGRKMVGGSQIGGMKETQE 306

Query: 337 -IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 373
            +    K  +  ++EL       +K  +INSA D L K
Sbjct: 307 MLEFCAKHKIVSDIEL-------IKMSDINSAMDRLAK 337

Length = 375

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 65.6 bits (161), Expect = 7e-12
 Identities = 78/327 (23%), Positives = 119/327 (36%), Gaps = 57/327 (17%)

Query: 18  RAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD----FPAVFP 71
           +A   +  G  + L + E  V  P   EV VR+   SL + D+    + +     P   P
Sbjct: 2   KAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLL---ILNGRYPPPVKDP 58

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            I   +  G V +VGE V     GD V+P F  +                        W+
Sbjct: 59  LIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPN------------------------WL 94

Query: 132 --PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
             P         L G  I         +EY VL    +V+    +    A  L C G++ 
Sbjct: 95  DGPPTAEDEASALGG-PIDGV-----LAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLT- 147

Query: 189 GVGAAWR----TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
               AW        ++ G TV++ G G + L   + A+  GA R+I      EK E  K 
Sbjct: 148 ----AWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKA 202

Query: 245 FGVTEFVNSKNCGD-KSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 302
            G    +N +   D    ++ +T G G D+  E  G  +L Q +      G G   ++G 
Sbjct: 203 LGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGGPGTLAQ-SIKAVAPG-GVISLIGF 260

Query: 303 DQPGSQLSLSSFEVLHSGKILMGSLFG 329
              G +  +    +L  G  L G   G
Sbjct: 261 -LSGFEAPVLLLPLLTKGATLRGIAVG 286

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 66/304 (21%), Positives = 108/304 (35%), Gaps = 59/304 (19%)

Query: 18  RAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWK----MKDFPAVFPR 72
           RAA+      PLV+ + + DP P   +V V+++   +C SD+        M D       
Sbjct: 2   RAAVFR--DGPLVVRD-VPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSL 58

Query: 73  -------ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 125
                  +LGHE  G V   G   +                      + K G   ++ P 
Sbjct: 59  MDLGADIVLGHEFCGEVVDYGPGTER---------------------KLKVGTRVTSLPL 97

Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---L 182
            +             +  G           ++EY +L  A +++V   +    A L   L
Sbjct: 98  LLCGQGASCGIGLSPEAPG----------GYAEYMLLSEALLLRVPDGLSMEDAALTEPL 147

Query: 183 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242
           + G+      A R A +  G   ++ G G IGLAV    +  G   I+  D   E+  + 
Sbjct: 148 AVGLH-----AVRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALA 202

Query: 243 KRFGVTEFVNSK-NCGDK--SIIIDMTDGGA-DYCFECVGLASLVQEAYACCRKGWGKTI 298
              G    V+   +      +  +    G      FECVG   L+Q+       G G+ +
Sbjct: 203 LAMGADIVVDPAADSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG-GRIV 261

Query: 299 VLGV 302
           V+GV
Sbjct: 262 VVGV 265

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 18  RAAIATAPGEPLVIDEVIVDPP---NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           +A +   PG   V D   V  P   +  +  VRI  T++C SD+  ++     A    +L
Sbjct: 2   KAVVYGGPGNVAVED---VPDPKIEHPTDAIVRITTTAICGSDLHMYR-GRTGAEPGLVL 57

Query: 75  GHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCS 121
           GHEA+G VE VG  V+ +  GD VV+P F   C  C  C+     +C 
Sbjct: 58  GHEAMGEVEEVGSAVESLKVGDRVVVP-FNVACGRCRNCKRGLTGVCL 104

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 62.6 bits (153), Expect = 7e-11
 Identities = 67/282 (23%), Positives = 98/282 (34%), Gaps = 76/282 (26%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRIL 74
           +A +  + G P    + EV    P   +V VR+  + +   D    +         P IL
Sbjct: 2   KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAIL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  GVVE+VGE V     GD V            GC                      
Sbjct: 62  GCDVAGVVEAVGEGVTRFRVGDEVY-----------GC---------------------- 88

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLD---IAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                  L+G          S +EY V+D   +A         P N +   +  +     
Sbjct: 89  -AGGLGGLQG----------SLAEYAVVDARLLAL-------KPANLSMREAAALPLVGI 130

Query: 192 AAW----RTANVEVGSTVVIF----GLGSIG--LAVAEGARLCGATRIIGVDVISEKFEI 241
            AW      A V+ G TV+I     G+G +   LA A GAR+  AT        SEK   
Sbjct: 131 TAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVY-AT------ASSEKAAF 183

Query: 242 GKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASL 282
            +  G    +  +    +  + + T G G D  F+ VG  +L
Sbjct: 184 ARSLGADPIIYYRETVVE-YVAEHTGGRGFDVVFDTVGGETL 224

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 61.7 bits (151), Expect = 1e-10
 Identities = 65/277 (23%), Positives = 100/277 (36%), Gaps = 79/277 (28%)

Query: 18  RAAIATAPGEPLVI--DEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           +A      G P V+  ++V V  P   EV VR     +   D  F +   +P   P +LG
Sbjct: 1   KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYF-RSGLYPLPLPFVLG 59

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
            E  GVVE+VG  V G   GD V                       A P           
Sbjct: 60  VEGAGVVEAVGPGVTGFKVGDRV---------------------AYAGPP---------- 88

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW- 194
                              +++EY V+  + +VK    +P         G+S    AA  
Sbjct: 89  ------------------GAYAEYRVVPASRLVK----LPD--------GISDETAAALL 118

Query: 195 -----------RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242
                       T  V+ G TV++    G +GL + + A+  GA  +IG     EK E+ 
Sbjct: 119 LQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELA 177

Query: 243 KRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG 278
           +  G    +N ++      + ++T G G D  ++ VG
Sbjct: 178 RAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVG 214

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 54/246 (21%), Positives = 85/246 (34%), Gaps = 25/246 (10%)

Query: 73  ILGHEAIGVVESVGENVDGVVE------GDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
           +LGHE +G V ++        +      G  V+      C  C  CR      C      
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCD----- 55

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCG 185
                     S  K         +     ++E+  L     +V V   +P   A    C 
Sbjct: 56  ----------SLRKYGHEALDSGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCA 105

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            +T V AA   A    G  V++ G G +GL  A  A   GA R++  D   ++ E+   F
Sbjct: 106 TAT-VMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164

Query: 246 GVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 305
           G T     +   ++   +     G D   E  G  + V+        G G  ++ G   P
Sbjct: 165 GATALAEPEVLAERQGGLQ-NGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAGSVFP 222

Query: 306 GSQLSL 311
           G  ++L
Sbjct: 223 GGPVAL 228

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 82/334 (24%), Positives = 132/334 (39%), Gaps = 33/334 (9%)

Query: 43  EVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPH 101
           +V V+I+   +CHSD+   K +     +P + GHE +G+V  +G+NV    EGD V +  
Sbjct: 39  DVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGV 98

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
            +  C  C  C     N C    F  +  +  D T  +                +S+  V
Sbjct: 99  IVGSCKSCESCDQDLENYCPKMIFTYNS-IGHDGTKNY--------------GGYSDMIV 143

Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEG 220
           +D   V++    +P +    L C   T           E G  + + GLG +G +AV  G
Sbjct: 144 VDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIG 203

Query: 221 ARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA 280
                   +I      E   I  R G   F+ S +       I    G  DY  + V   
Sbjct: 204 KAFGLKVTVISSSSNKEDEAI-NRLGADSFLVSTDPEKMKAAI----GTMDYIIDTVSAV 258

Query: 281 SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSD-IPI 339
             +       +   GK I LG+  P   L L  F ++   K++ GS  GG+K   + +  
Sbjct: 259 HALGPLLGLLKVN-GKLITLGL--PEKPLELPIFPLVLGRKLVGGSDIGGIKETQEMLDF 315

Query: 340 LLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 373
             K  +  ++EL       ++ +EIN+A + L K
Sbjct: 316 CAKHNITADIEL-------IRMDEINTAMERLAK 342

Length = 360

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 68/248 (27%), Positives = 102/248 (41%), Gaps = 40/248 (16%)

Query: 18  RAAIATAPGEPLVIDEVIVDP--------PNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           R  +   PG+  V D  I  P           H V ++++ T++C SD    + +   A 
Sbjct: 4   RGVVYLGPGKVEVQD--IDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRT-TAP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
              +LGHE  G V   G +V+ +  GD+V   F   C  C  C+     +C      ++P
Sbjct: 61  TGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVC----LNVNP 116

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNR--------- 178
                    + D+ G        V   SEY ++  A  +++K      P+R         
Sbjct: 117 ARAGAAYG-YVDMGG-------WVGGQSEYVMVPYADFNLLKF-----PDRDQALEKIRD 163

Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
             +LS    TG   A  TA V  GSTV I G G +GLA A  A+L GA  +I  D+   +
Sbjct: 164 LTMLSDIFPTGYHGAV-TAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPAR 222

Query: 239 FEIGKRFG 246
               + FG
Sbjct: 223 LAQARSFG 230

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 64/288 (22%), Positives = 93/288 (32%), Gaps = 74/288 (25%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFPAVF 70
           R  + T  G P  L + E  +  P + EV V++  + +  +DV      +      P   
Sbjct: 2   REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFT- 60

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P   G++ +G V+++G  V G   GD V                                
Sbjct: 61  P---GYDLVGRVDALGSGVTGFEVGDRVAA------------------------------ 87

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
                                 V   +EY  LD  ++V V   V    A    C V   V
Sbjct: 88  -------------------LTRVGGNAEYINLDAKYLVPVPEGVDAAEA---VCLVLNYV 125

Query: 191 GAAW----RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
             A+    R A V  G  V+I G  G +G A+ E A L GA  + G           +  
Sbjct: 126 -TAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAE-VYGTAS-ERNHAALREL 182

Query: 246 GVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 293
           G T            +   +T GG D  F+ VG  S  +   A    G
Sbjct: 183 GATPIDYR---TKDWLPAMLTPGGVDVVFDGVGGESYEESYAALAPGG 227

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           TG       A V+ G TV +FG G +GL  A  A L GA+R+  VD + E+ ++ +  G 
Sbjct: 164 TGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA 222

Query: 248 TEFVNSKNCGDKSI-IIDMTDGGADYCFECVG 278
              ++  + GD    I+ +  GG D   +CVG
Sbjct: 223 -IPIDFSD-GDPVEQILGLEPGGVDRAVDCVG 252

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 57/217 (26%), Positives = 81/217 (37%), Gaps = 50/217 (23%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--PAVFPRI 73
           RA      G P  L I+E+ V  P + EV +R+    L  +D   ++   +  P   P  
Sbjct: 2   RAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADA-MFRRGAYIEPPPLPAR 60

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           LG+EA GVVE+VG  V G   GD V                            + P    
Sbjct: 61  LGYEAAGVVEAVGAGVTGFAVGDRVS---------------------------VIPAADL 93

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
            Q                   +++EY ++  A VVK+   +    A  L     T  GA 
Sbjct: 94  GQ-----------------YGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGAL 136

Query: 194 WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRI 229
              A +  G +V+I     S+GLA  + A   GAT I
Sbjct: 137 VELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVI 173

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 51/219 (23%), Positives = 86/219 (39%), Gaps = 24/219 (10%)

Query: 40  NSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96
           N++   V+I    +C SD+ ++   K+ +F    P +LGHE IG +     +  G+ EG 
Sbjct: 26  NNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGLKEGQ 83

Query: 97  VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF 156
            V  +    C  C  C S   N C+   F  S          F  + G           F
Sbjct: 84  TVAINPSKPCGHCKYCLSHNENQCTTMRFFGS-------AMYFPHVDG----------GF 126

Query: 157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216
           + Y V+D A  +              +  ++  + AA +  ++  G  V + G+G IG  
Sbjct: 127 TRYKVVDTAQCIPYPEKADEKVMA-FAEPLAVAIHAAHQAGDL-QGKRVFVSGVGPIGCL 184

Query: 217 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           +    +  GA  I+  DV      + +  G  + VN +N
Sbjct: 185 IVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN 223

Length = 343

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 59/287 (20%), Positives = 90/287 (31%), Gaps = 74/287 (25%)

Query: 20  AIATAPGEPLVIDEVIVD----PPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV---FPR 72
            + T  G P V+  + V+     P   EV V++   S+   D    +      +   FP 
Sbjct: 1   VVYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPP 60

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           I G +  G V +VG  V     GD V            G    KG               
Sbjct: 61  IPGMDFAGEVVAVGSGVTRFKVGDEVF-----------GRLPPKG--------------- 94

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
                      G          + +EY V   + + K    V    A  L     T + A
Sbjct: 95  ----------GG----------ALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQA 134

Query: 193 AWRTANVEVGSTVVIFG----LGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
                 V+ G  V+I G    +G+    +A A GA       + GV   +   E+ +  G
Sbjct: 135 LRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA------HVTGVC-STRNAELVRSLG 187

Query: 247 VTEFVNSKNCGDKSIIIDMTDGGA--DYCFECVGLASLVQEAYACCR 291
             E ++          + +T GG   D  F+ VG +      Y    
Sbjct: 188 ADEVIDYTTED----FVALTAGGEKYDVIFDAVGNSPF--SLYRASL 228

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 83/337 (24%), Positives = 142/337 (42%), Gaps = 39/337 (11%)

Query: 43  EVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPH 101
           +V +++I   +CH+D+   K     + +P + GHE +G V  VG +V     GD+V +  
Sbjct: 36  DVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGV 95

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
            +  C EC  C+S     C+    +I  W   D  +  K  +G           F+   V
Sbjct: 96  IVGCCGECSPCKSDLEQYCNK---RI--WSYNDVYTDGKPTQG----------GFASAMV 140

Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 221
           +D   VVK+   + P +A  L C   T           + G    I GLG +G    + A
Sbjct: 141 VDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIA 200

Query: 222 RLCGATRIIGVDVIS----EKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECV 277
           +  G      V VIS    ++ E  +  G  +++ S +  +     D      DY  + V
Sbjct: 201 KAMGHH----VTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAAD----SLDYIIDTV 252

Query: 278 GLASLVQEAYACCRKGWGKTIVLGV-DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSD 336
            +   + E Y    K  GK I++GV + P   L   +  ++   K++ GS  G +K   +
Sbjct: 253 PVFHPL-EPYLSLLKLDGKLILMGVINTP---LQFVTPMLMLGRKVITGSFIGSMKETEE 308

Query: 337 IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 373
           +   L+   +K L     +   +K + +N+AF+ L K
Sbjct: 309 M---LEFCKEKGL---TSMIEVVKMDYVNTAFERLEK 339

Length = 357

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 62/270 (22%), Positives = 95/270 (35%), Gaps = 57/270 (21%)

Query: 18  RAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWK--MKDFPAVFPRIL 74
           +A +     +  V D  +  P P   E  VR++   +C++D+  +K         FP + 
Sbjct: 2   KALVLDGGLDLRVED--LPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP-----FPGVP 54

Query: 75  GHEAIGVVESVGEN--VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE +G+VE   E   V   V G++ I      C  C  CR      C           P
Sbjct: 55  GHEFVGIVEEGPEAELVGKRVVGEINIA-----CGRCEYCRRGLYTHC-----------P 98

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST---- 188
                   D  G          +F+EY  L + ++  V   VP  +A      V      
Sbjct: 99  NRTVLGIVDRDG----------AFAEYLTLPLENLHVVPDLVPDEQA------VFAEPLA 142

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
                     +  G  V + G G +GL +A+   L G   ++ V   SEK  + +R GV 
Sbjct: 143 AALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVE 201

Query: 249 EFVNSKNCGDKSIIIDMTDGGADYCFECVG 278
             +            +   GG D   E  G
Sbjct: 202 TVLP--------DEAESEGGGFDVVVEATG 223

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 52/242 (21%), Positives = 84/242 (34%), Gaps = 59/242 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           +A +   PG P  L + E+ +  P    V +R+    L  S++   +       FPR+LG
Sbjct: 2   KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLG 61

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
            EA+G VE           G  V               +  G +   F            
Sbjct: 62  IEAVGEVEEAPGG--TFTPGQRVA--------------TAMGGMGRTFD----------- 94

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                              S++EYT++    V  +D  +       L     T  G+ +R
Sbjct: 95  ------------------GSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFR 136

Query: 196 TANVEVGSTVVI------FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           +  ++ G T++I       GL ++ LA A GA +   TR        E+  + K  G  E
Sbjct: 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTR------SPERAALLKELGADE 190

Query: 250 FV 251
            V
Sbjct: 191 VV 192

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 18 RAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFP 71
          RAA+ T  G+P   L I EV    P + EV VR   + + + D+  W ++    +    P
Sbjct: 2  RAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDL--WTIRGTYGYKPELP 59

Query: 72 RILGHEAIGVVESVGENVDGVVEGDVV 98
           I G EA+GVV++VGE V G+  G  V
Sbjct: 60 AIGGSEAVGVVDAVGEGVKGLQVGQRV 86

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 17  CRAAIATAPGEPL----VIDEVIVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFP 67
            +A + T  GEP     +    I  P   +EV V+++   +  +D+      +       
Sbjct: 1   AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTT 60

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPH 101
              P + G+E +G V  VG  V  +  GD VIP 
Sbjct: 61  PEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPL 94

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 20  AIATAPGEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDFPAVFPRI 73
            + T  GEP    L +  + + PP   EV VR++   +  SD+          P   P +
Sbjct: 1   VVYTQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPP-LPAV 59

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIP 100
            G+E +GVV  VG  V G++ G  V+P
Sbjct: 60  PGNEGVGVVVEVGSGVSGLLVGQRVLP 86

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 63/271 (23%), Positives = 102/271 (37%), Gaps = 66/271 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           RA      G P  L + ++ V  P   EV VR+  + +   D                + 
Sbjct: 2   RAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVP 61

Query: 76  H-EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             +  GVVE+VGE VDG+  GD V   +L +    +G   ++G                 
Sbjct: 62  GSDGAGVVEAVGEGVDGLKVGDRV---WLTN----LGWGRRQG----------------- 97

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA-- 192
                               + +EY V+    +V +   V          G + G+ A  
Sbjct: 98  --------------------TAAEYVVVPADQLVPLPDGVSF------EQGAALGIPALT 131

Query: 193 AWRT----ANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           A+R     A  + G TV++ G  G++G A  + AR  GA R+I     +E  E+ ++ G 
Sbjct: 132 AYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGA 190

Query: 248 TEFVN--SKNCGDKSIIIDMTDG-GADYCFE 275
               N  +++  D+  I+  T G G D   E
Sbjct: 191 DAVFNYRAEDLADR--ILAATAGQGVDVIIE 219

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 40/170 (23%), Positives = 59/170 (34%), Gaps = 32/170 (18%)

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
                    FPRI G + +G V +VGE VD    G+ V+                     
Sbjct: 68  AGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERVL--------------------- 106

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
                 + P +         D+    I        F+EYTV+   +   V+  +      
Sbjct: 107 ------VDPSIRDPPEDDPADID--YIGSERD-GGFAEYTVVPAENAYPVNSPLSDVELA 157

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRI 229
              C  ST      R A V  G TV++ G  G +G A+ + A+  GA  I
Sbjct: 158 TFPCSYSTAENMLER-AGVGAGETVLVTGASGGVGSALVQLAKRRGAIVI 206

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 7/133 (5%)

Query: 151 VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVI 207
           V VS + EY + D   + K+DP+  P  A L   G+  G+ A +        + G TVV+
Sbjct: 98  VGVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM-PGLTAYFGLLDIGQPKAGETVVV 156

Query: 208 FGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTEFVNSKNCGDKSIIIDM 265
               G++G  V + A+L G  R++G+   +EK +      G    ++ K       + + 
Sbjct: 157 SAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEA 215

Query: 266 TDGGADYCFECVG 278
              G D  FE VG
Sbjct: 216 CPKGIDVYFENVG 228

Length = 340

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 18 RAAIATAPGEPLVIDEVIVDP-----PNSHEVRVRIICTSLCHSDVTFWKMK---DFPAV 69
          +A +    G+PL + E+ +       P   EV +++    +  SD+ F  +K        
Sbjct: 2  KALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGF--LKGQYGSTKA 59

Query: 70 FPRILGHEAIGVVESVGENVDG 91
           P   G E  G V + G     
Sbjct: 60 LPVPPGFEGSGTVVAAGGGPLA 81

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGV 232
           G TV+I GLG IG  +A  A+  G  R+IGV
Sbjct: 134 GKTVLIVGLGDIGREIARRAKAFGM-RVIGV 163

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 38 PPNSHEVRVRIICTSLCHSDVTFWKM-KDFPAVF------PRILGHEAIGVVESVGENVD 90
               E+ VR+I  SLC S         D   V       P ILGHE  G +  VG+   
Sbjct: 23 EIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGKKWQ 82

Query: 91 G 91
          G
Sbjct: 83 G 83

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 28  PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL-GHEAIGVVESVG 86
           PL   E  V  P   E+ VR+    +C +D+   +  D P   PR+  GHE +G V   G
Sbjct: 14  PLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSE-GDLPVHRPRVTPGHEVVGEVAGRG 72

Query: 87  ENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSA 122
            +  G   GD V I      C  C  CR    NLC A
Sbjct: 73  ADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPA 109

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 39.3 bits (93), Expect = 0.002
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 18 RAAIATAPGEP--LVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRI 73
          +A +   PG P  L + EV   P P   EV +R+    +  +D+   +     P     I
Sbjct: 2  KAIVIKEPGGPEVLELGEV-PKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDI 60

Query: 74 LGHEAIGVVESVGENVDGVVEGDVV 98
          LG E  GVV +VG  V G   GD V
Sbjct: 61 LGLEVAGVVVAVGPGVTGWKVGDRV 85

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR--- 72
          RA      G    L I E     P  ++V +++    +  +D    + K  P   P    
Sbjct: 3  RAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP---PPGSS 59

Query: 73 -ILGHEAIGVVESVGENVDGVVEGDVVI 99
           ILG E  G VE VG +V    EGD V+
Sbjct: 60 EILGLEVAGYVEDVGSDVKRFKEGDRVM 87

Length = 334

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 31 IDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV 89
          ID  +  P P   ++ VR+   S+   D             P+ILG +A GVVE+VG  V
Sbjct: 19 IDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEV 78

Query: 90 DGVVEGDVV 98
               GD V
Sbjct: 79 TLFKVGDEV 87

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	385
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	100.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	100.0
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	100.0
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	100.0
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	100.0
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	100.0
PTZ00354	334	alcohol dehydrogenase; Provisional	100.0
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	100.0
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	100.0
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	100.0
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	100.0
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	100.0
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	100.0
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	100.0
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	100.0
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	100.0
cd08252	336	AL_MDR Arginate lyase and other MDR family members	100.0
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	100.0
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	100.0
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	100.0
COG2130	340	Putative NADP-dependent oxidoreductases [General f	100.0
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	100.0
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	100.0
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	100.0
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	100.0
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	100.0
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	100.0
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	100.0
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	100.0
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	100.0
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	100.0
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.98
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.97
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.97
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.96
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.96
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.95
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.9
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.77
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.52
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.38
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.26
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.63
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	98.47
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.44
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.37
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.3
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.14
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.13
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.12
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.1
PLN02494	477	adenosylhomocysteinase	97.96
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.81
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.77
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.68
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.68
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.67
PRK08324	681	short chain dehydrogenase; Validated	97.66
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.62
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.53
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.51
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.4
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.16
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	97.15
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.11
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.05
PRK05693	274	short chain dehydrogenase; Provisional	97.03
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.01
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.01
PRK14967	223	putative methyltransferase; Provisional	97.01
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.0
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.99
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.94
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.92
PRK06139	330	short chain dehydrogenase; Provisional	96.88
PRK05993	277	short chain dehydrogenase; Provisional	96.86
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.84
PRK07806	248	short chain dehydrogenase; Provisional	96.84
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.82
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.79
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.77
TIGR00438	188	rrmJ cell division protein FtsJ.	96.76
PRK12939	250	short chain dehydrogenase; Provisional	96.72
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.7
PLN03209	576	translocon at the inner envelope of chloroplast su	96.69
PRK07109	334	short chain dehydrogenase; Provisional	96.64
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.63
PRK08265	261	short chain dehydrogenase; Provisional	96.61
PRK08628	258	short chain dehydrogenase; Provisional	96.59
PRK12742	237	oxidoreductase; Provisional	96.56
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.55
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.51
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.5
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	96.5
PRK12829	264	short chain dehydrogenase; Provisional	96.5
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.43
PRK06182	273	short chain dehydrogenase; Validated	96.42
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.4
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	96.4
PRK08017	256	oxidoreductase; Provisional	96.4
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.4
PRK07326	237	short chain dehydrogenase; Provisional	96.39
PRK07060	245	short chain dehydrogenase; Provisional	96.38
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.36
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.35
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.33
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	96.33
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.32
PRK09291	257	short chain dehydrogenase; Provisional	96.32
PRK06128	300	oxidoreductase; Provisional	96.32
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.31
PRK05866	293	short chain dehydrogenase; Provisional	96.3
PRK07814	263	short chain dehydrogenase; Provisional	96.27
PRK09186	256	flagellin modification protein A; Provisional	96.24
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.21
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.2
PRK04148	134	hypothetical protein; Provisional	96.2
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.2
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.2
PRK08339	263	short chain dehydrogenase; Provisional	96.19
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.18
PRK12828	239	short chain dehydrogenase; Provisional	96.16
PRK08177	225	short chain dehydrogenase; Provisional	96.15
PRK05872	296	short chain dehydrogenase; Provisional	96.14
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.12
PRK06841	255	short chain dehydrogenase; Provisional	96.1
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.1
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.1
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.09
PRK07831	262	short chain dehydrogenase; Provisional	96.08
PRK06949	258	short chain dehydrogenase; Provisional	96.08
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.07
PRK06500	249	short chain dehydrogenase; Provisional	96.07
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.06
PRK06198	260	short chain dehydrogenase; Provisional	96.06
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.05
PRK06484	520	short chain dehydrogenase; Validated	96.05
PRK08267	260	short chain dehydrogenase; Provisional	96.05
PRK06194	287	hypothetical protein; Provisional	96.04
PRK05867	253	short chain dehydrogenase; Provisional	96.03
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.02
PRK06057	255	short chain dehydrogenase; Provisional	96.01
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.99
PRK08618	325	ornithine cyclodeaminase; Validated	95.97
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	95.97
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.97
PRK08264	238	short chain dehydrogenase; Validated	95.95
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.94
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.93
PRK06180	277	short chain dehydrogenase; Provisional	95.92
PRK12937	245	short chain dehydrogenase; Provisional	95.89
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.89
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.88
CHL00194	317	ycf39 Ycf39; Provisional	95.88
COG4122	219	Predicted O-methyltransferase [General function pr	95.86
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.82
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	95.82
PRK06181	263	short chain dehydrogenase; Provisional	95.82
PRK08219	227	short chain dehydrogenase; Provisional	95.82
PRK07063	260	short chain dehydrogenase; Provisional	95.82
PRK06196	315	oxidoreductase; Provisional	95.81
PRK07478	254	short chain dehydrogenase; Provisional	95.79
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.79
PRK11207	197	tellurite resistance protein TehB; Provisional	95.78
PRK06172	253	short chain dehydrogenase; Provisional	95.78
PRK07062	265	short chain dehydrogenase; Provisional	95.78
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	95.77
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.77
PRK07774	250	short chain dehydrogenase; Provisional	95.74
PRK06940	275	short chain dehydrogenase; Provisional	95.74
PRK09072	263	short chain dehydrogenase; Provisional	95.73
PRK00536	262	speE spermidine synthase; Provisional	95.73
PRK01581	374	speE spermidine synthase; Validated	95.72
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.72
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.71
PRK00811	283	spermidine synthase; Provisional	95.68
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	95.68
PRK08263	275	short chain dehydrogenase; Provisional	95.67
PLN02366	308	spermidine synthase	95.67
PRK07890	258	short chain dehydrogenase; Provisional	95.67
PRK06125	259	short chain dehydrogenase; Provisional	95.65
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	95.65
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.65
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.65
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.64
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.63
PRK07832	272	short chain dehydrogenase; Provisional	95.63
PRK06953	222	short chain dehydrogenase; Provisional	95.62
PRK08589	272	short chain dehydrogenase; Validated	95.6
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.6
COG2910	211	Putative NADH-flavin reductase [General function p	95.58
PRK07576	264	short chain dehydrogenase; Provisional	95.56
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.53
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	95.53
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.53
PRK06138	252	short chain dehydrogenase; Provisional	95.53
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.52
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	95.52
PRK08643	256	acetoin reductase; Validated	95.51
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	95.5
PRK08317	241	hypothetical protein; Provisional	95.48
PRK07402	196	precorrin-6B methylase; Provisional	95.48
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.47
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.46
PRK08226	263	short chain dehydrogenase; Provisional	95.46
PRK10538	248	malonic semialdehyde reductase; Provisional	95.46
PRK07067	257	sorbitol dehydrogenase; Provisional	95.44
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.44
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.44
PRK04457	262	spermidine synthase; Provisional	95.43
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	95.42
PRK05875	276	short chain dehydrogenase; Provisional	95.42
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.41
PRK05876	275	short chain dehydrogenase; Provisional	95.4
PRK07985	294	oxidoreductase; Provisional	95.39
PRK07677	252	short chain dehydrogenase; Provisional	95.39
PRK06114	254	short chain dehydrogenase; Provisional	95.39
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	95.38
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	95.38
PRK10258	251	biotin biosynthesis protein BioC; Provisional	95.38
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.38
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.37
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.35
PRK06720	169	hypothetical protein; Provisional	95.35
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.33
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.33
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.33
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	95.31
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.31
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.3
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.28
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	95.28
PRK07454	241	short chain dehydrogenase; Provisional	95.26
PRK09242	257	tropinone reductase; Provisional	95.26
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.26
PRK06197	306	short chain dehydrogenase; Provisional	95.25
PLN02253	280	xanthoxin dehydrogenase	95.25
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	95.23
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.23
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.2
PRK07856	252	short chain dehydrogenase; Provisional	95.2
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.2
PRK05854	313	short chain dehydrogenase; Provisional	95.18
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.17
PRK07904	253	short chain dehydrogenase; Provisional	95.17
PRK08278	273	short chain dehydrogenase; Provisional	95.17
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	95.17
PRK05884	223	short chain dehydrogenase; Provisional	95.14
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.14
PRK07035	252	short chain dehydrogenase; Provisional	95.14
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	95.13
PRK05650	270	short chain dehydrogenase; Provisional	95.11
PRK06482	276	short chain dehydrogenase; Provisional	95.11
PLN03075	296	nicotianamine synthase; Provisional	95.08
PRK08862	227	short chain dehydrogenase; Provisional	95.08
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.06
PRK07825	273	short chain dehydrogenase; Provisional	95.06
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	95.06
COG0673	342	MviM Predicted dehydrogenases and related proteins	95.04
PLN02244	340	tocopherol O-methyltransferase	95.02
PRK06101	240	short chain dehydrogenase; Provisional	95.02
PRK12743	256	oxidoreductase; Provisional	95.02
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.0
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.0
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.97
PRK12367	245	short chain dehydrogenase; Provisional	94.96
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.95
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.93
PLN02780	320	ketoreductase/ oxidoreductase	94.93
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	94.91
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	94.91
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.91
PRK14903	431	16S rRNA methyltransferase B; Provisional	94.9
PLN02823	336	spermine synthase	94.88
PRK07574	385	formate dehydrogenase; Provisional	94.88
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	94.86
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.86
PRK04266	226	fibrillarin; Provisional	94.85
PRK08328	231	hypothetical protein; Provisional	94.85
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.84
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.83
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.83
PRK07775	274	short chain dehydrogenase; Provisional	94.82
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	94.81
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	94.81
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	94.81
PRK08251	248	short chain dehydrogenase; Provisional	94.8
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	94.79
PLN02476	278	O-methyltransferase	94.78
PRK05717	255	oxidoreductase; Validated	94.75
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	94.74
PRK07791	286	short chain dehydrogenase; Provisional	94.74
PRK12938	246	acetyacetyl-CoA reductase; Provisional	94.73
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	94.73
PLN02256	304	arogenate dehydrogenase	94.72
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	94.71
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.7
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.7
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	94.7
PRK08703	239	short chain dehydrogenase; Provisional	94.69
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.69
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.69
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	94.69
PLN00203	519	glutamyl-tRNA reductase	94.69
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	94.64
PRK06484	520	short chain dehydrogenase; Validated	94.62
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	94.59
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	94.59
PRK06483	236	dihydromonapterin reductase; Provisional	94.58
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	94.57
PRK10669	558	putative cation:proton antiport protein; Provision	94.54
PRK11579	346	putative oxidoreductase; Provisional	94.54
PRK08303	305	short chain dehydrogenase; Provisional	94.52
PRK07340	304	ornithine cyclodeaminase; Validated	94.5
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	94.49
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	94.49
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	94.49
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	94.48
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	94.47
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	94.47
KOG0725	270	consensus Reductases with broad range of substrate	94.46
PRK07024	257	short chain dehydrogenase; Provisional	94.46
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	94.45
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	94.45
PRK06701	290	short chain dehydrogenase; Provisional	94.45
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.41
PRK07074	257	short chain dehydrogenase; Provisional	94.4
PLN03139	386	formate dehydrogenase; Provisional	94.39
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.35
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.35
PRK06179	270	short chain dehydrogenase; Provisional	94.35
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.35
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	94.35
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	94.33
PRK06914	280	short chain dehydrogenase; Provisional	94.32
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.32
PRK12747	252	short chain dehydrogenase; Provisional	94.31
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	94.29
PRK07417	279	arogenate dehydrogenase; Reviewed	94.28
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	94.26
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.26
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.26
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.24
PLN02735	1102	carbamoyl-phosphate synthase	94.24
PRK07102	243	short chain dehydrogenase; Provisional	94.23
PRK08340	259	glucose-1-dehydrogenase; Provisional	94.22
PRK09135	249	pteridine reductase; Provisional	94.21
PLN02653	340	GDP-mannose 4,6-dehydratase	94.2
PRK06523	260	short chain dehydrogenase; Provisional	94.19
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	94.18
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	94.17
PRK06398	258	aldose dehydrogenase; Validated	94.16
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	94.15
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.13
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.12
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.11
PRK03612	521	spermidine synthase; Provisional	94.08
PRK13255	218	thiopurine S-methyltransferase; Reviewed	94.07
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.07
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.04
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	94.04
PRK08936	261	glucose-1-dehydrogenase; Provisional	94.03
PLN02233	261	ubiquinone biosynthesis methyltransferase	94.02
PRK12746	254	short chain dehydrogenase; Provisional	93.97
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	93.97
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	93.96
PRK08223	287	hypothetical protein; Validated	93.94
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	93.94
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.92
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	93.9
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	93.89
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	93.88
PRK07577	234	short chain dehydrogenase; Provisional	93.88
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	93.87
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	93.85
PLN02896	353	cinnamyl-alcohol dehydrogenase	93.83
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	93.82
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	93.8
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.77
PRK09496	453	trkA potassium transporter peripheral membrane com	93.77
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	93.76
PRK13303	265	L-aspartate dehydrogenase; Provisional	93.76
TIGR02415	254	23BDH acetoin reductases. One member of this famil	93.75
PRK10206	344	putative oxidoreductase; Provisional	93.68
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	93.68
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	93.67
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.63
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	93.61
PRK12827	249	short chain dehydrogenase; Provisional	93.59
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	93.59
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	93.56
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	93.55
PRK09134	258	short chain dehydrogenase; Provisional	93.55
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	93.54
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	93.54
PRK14901	434	16S rRNA methyltransferase B; Provisional	93.51
PRK12744	257	short chain dehydrogenase; Provisional	93.47
PRK05855	582	short chain dehydrogenase; Validated	93.47
PLN02928	347	oxidoreductase family protein	93.45
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.42
TIGR00452	314	methyltransferase, putative. Known examples to dat	93.39
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.39
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	93.38
PRK13243	333	glyoxylate reductase; Reviewed	93.37
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	93.37
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	93.37
PLN02589	247	caffeoyl-CoA O-methyltransferase	93.36
PRK09496	453	trkA potassium transporter peripheral membrane com	93.34
PRK06141	314	ornithine cyclodeaminase; Validated	93.34
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	93.32
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	93.31

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=5.1e-67  Score=476.55  Aligned_cols=336  Identities=29%  Similarity=0.465  Sum_probs=307.2

Q ss_pred             CeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        14 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      +++|||+++.++++|+++.+++.|+|+++||+|+|+|+|+|++|++.++|.++...+|++||||.+|+|+++|++|++|+
T Consensus         1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k   80 (339)
T COG1064           1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK   80 (339)
T ss_pred             CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence            36799999999999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             CCCEEEe-cCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCC
Q 016660           94 EGDVVIP-HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (385)
Q Consensus        94 ~GdrV~~-~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~  172 (385)
                      +||||.+ ++..+|+.|+||++|++++|+....   +|++.+|                   +|+||+++++.+++++|+
T Consensus        81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~~~G-------------------Gyaeyv~v~~~~~~~iP~  138 (339)
T COG1064          81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYTTDG-------------------GYAEYVVVPARYVVKIPE  138 (339)
T ss_pred             CCCEEEecCccCCCCCCccccCcccccCCCccc---cceeecC-------------------cceeEEEEchHHeEECCC
Confidence            9999999 9999999999999999999998776   7777777                   999999999999999999


Q ss_pred             CCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +++++.||.+.|+..|+|.++ +.+++++|++|+|+|.|++|.+++|+||++|+ +|++++++++|++++++||++++++
T Consensus       139 ~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~  216 (339)
T COG1064         139 GLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVIN  216 (339)
T ss_pred             CCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEE
Confidence            999999999999999999987 55899999999999999999999999999998 9999999999999999999999999


Q ss_pred             CCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          253 SKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      .++.+..+.+++.    +|+++|+++ +.+++.+++.|+++ |+++++|........+++.+.++.+++++.|+..++. 
T Consensus       217 ~~~~~~~~~~~~~----~d~ii~tv~-~~~~~~~l~~l~~~-G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~-  289 (339)
T COG1064         217 SSDSDALEAVKEI----ADAIIDTVG-PATLEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTR-  289 (339)
T ss_pred             cCCchhhHHhHhh----CcEEEECCC-hhhHHHHHHHHhcC-CEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCH-
Confidence            8754444434442    999999999 88899999999997 9999999864234456788888999999999987764 


Q ss_pred             CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          333 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                        .++++++++..+|++.+.  +.+.++++++++|++.|++++. +|+||++.
T Consensus       290 --~d~~e~l~f~~~g~Ikp~--i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~~  338 (339)
T COG1064         290 --ADLEEALDFAAEGKIKPE--ILETIPLDEINEAYERMEKGKVRGRAVIDMS  338 (339)
T ss_pred             --HHHHHHHHHHHhCCceee--EEeeECHHHHHHHHHHHHcCCeeeEEEecCC
Confidence              799999999999977666  5479999999999999999987 59999875

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=8.8e-66  Score=457.89  Aligned_cols=365  Identities=45%  Similarity=0.789  Sum_probs=347.2

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      |++||.+..++++|++++++.+++|++|||+||+.|+|+|++|....+|.++.. +|.++|||++|+|++||++|+.++|
T Consensus         1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp   79 (366)
T COG1062           1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP   79 (366)
T ss_pred             CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence            458899999999999999999999999999999999999999999999998877 9999999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      ||+|+..++.+|+.|.+|+++.+|+|......+..|...+|..|++ .++...++++|.++|++|.++++..+++++++.
T Consensus        80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls-~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~  158 (366)
T COG1062          80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLS-GNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA  158 (366)
T ss_pred             CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeee-cCCcceeeeeccccchhheeecccceEECCCCC
Confidence            9999999999999999999999999998887778899999999988 888999999999999999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      +++.++++.|...|.+.+..+.+++++|++|.|+|.|++|++++|-|+..|+++||+++.+++|++++++||+++++|++
T Consensus       159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~  238 (366)
T COG1062         159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPK  238 (366)
T ss_pred             CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          255 NC-GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       255 ~~-~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      +. +..+.+..++++|+|++|||+|....+++++.+..++ |+.+.+|.......+++++.++... .++.|+.++.-..
T Consensus       239 ~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~-G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p  316 (366)
T COG1062         239 EVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRG-GTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARP  316 (366)
T ss_pred             hhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcC-CeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCcc
Confidence            85 3555588899889999999999999999999999995 9999999988788888898888885 9999999998888


Q ss_pred             CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          334 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      +.++.+++++..+|++++++++++.++|+|++|||+.|.+++..|.||.+
T Consensus       317 ~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~IR~Vi~~  366 (366)
T COG1062         317 RSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSIRSVIRF  366 (366)
T ss_pred             ccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCceeeEEecC
Confidence            89999999999999999999999999999999999999999999998865

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-63  Score=437.04  Aligned_cols=370  Identities=55%  Similarity=0.982  Sum_probs=349.6

Q ss_pred             CCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCC
Q 016660           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      .+..+|||.+..++++||.++++.+++|+.+||+||++++++|++|...+.|..+...+|+++|||.+|+|+++|++|++
T Consensus         3 gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~   82 (375)
T KOG0022|consen    3 GKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTT   82 (375)
T ss_pred             CCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCccc
Confidence            45688999999999999999999999999999999999999999999999999877889999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCC-CCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI-SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      |++||+|+..+...|+.|.+|+++..|+|......+ ..++..+|..|++ .+|+..|+|++..+|+||.+++...+.+|
T Consensus        83 vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~-~~gk~iyHfmg~StFsEYTVv~~~~v~kI  161 (375)
T KOG0022|consen   83 VKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFT-CKGKPIYHFMGTSTFSEYTVVDDISVAKI  161 (375)
T ss_pred             cCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeee-eCCCceEEecccccceeEEEeecceeEec
Confidence            999999999999999999999999999999999864 4455569999999 88999999999999999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v  250 (385)
                      ++..+++.+++|.|...|+|.|+++.+++++|+++.|+|-|++|+++++-||+.|+.+||++|.+++|.+.+++||+++.
T Consensus       162 d~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~  241 (375)
T KOG0022|consen  162 DPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEF  241 (375)
T ss_pred             CCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCC--chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeee
Q 016660          251 VNSKNCG--DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  328 (385)
Q Consensus       251 v~~~~~~--~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  328 (385)
                      +|+.+..  ..+.+++.|++|+|+-|||+|...++.+++.+..++||+-|.+|.......+++.++.++. +.++.|+.+
T Consensus       242 iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~-GR~~~Gs~F  320 (375)
T KOG0022|consen  242 INPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVT-GRTWKGSAF  320 (375)
T ss_pred             cChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhcc-ccEEEEEec
Confidence            9998532  2334889999999999999999999999999999999999999998888888899888777 899999999


Q ss_pred             cCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          329 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      +.+..+.++..+++...++++.++.+|+|..||+++++||+.|.+++..|.|+.+
T Consensus       321 GG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~GksiR~vl~~  375 (375)
T KOG0022|consen  321 GGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSIRCVLWM  375 (375)
T ss_pred             ccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceEEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999875

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.1e-60  Score=419.77  Aligned_cols=340  Identities=26%  Similarity=0.455  Sum_probs=301.0

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCC-CCCeEEEEEeeeecccccccccccCCCC---CCCCccccCceeEEEEEeCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      .+|+|+++.++++ +++.+.|.|++ .|+||+|++.++|||++|+|.+......   .+.|+++|||.+|+|.++|+.|+
T Consensus         3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk   81 (354)
T KOG0024|consen    3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK   81 (354)
T ss_pred             cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence            4589999999998 99999999987 9999999999999999999999765533   34799999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCcccccccCCceeeccccccceeeeEeeccCceEE
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~  169 (385)
                      ++++||||++.|..+|+.|++|++|++|+|+.-.|   .+. ..+|                   ++++|++.+++++++
T Consensus        82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f---~atpp~~G-------------------~la~y~~~~~dfc~K  139 (354)
T KOG0024|consen   82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVF---CATPPVDG-------------------TLAEYYVHPADFCYK  139 (354)
T ss_pred             ccccCCeEEecCCCccccchhhhCcccccCCcccc---ccCCCcCC-------------------ceEEEEEechHheee
Confidence            99999999999999999999999999999988776   222 2344                   999999999999999


Q ss_pred             CCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe
Q 016660          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (385)
Q Consensus       170 iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~  249 (385)
                      +|+++|++++|++. +++++|+|. +++++++|++|||+|+|++|+++...||++|+.+|++++..+.|++++++||++.
T Consensus       140 LPd~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~  217 (354)
T KOG0024|consen  140 LPDNVSFEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV  217 (354)
T ss_pred             CCCCCchhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE
Confidence            99999999999998 699999976 7789999999999999999999999999999999999999999999999999998


Q ss_pred             EEeCCCCCchhHHHHhh----CC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEE
Q 016660          250 FVNSKNCGDKSIIIDMT----DG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  324 (385)
Q Consensus       250 vv~~~~~~~~~~i~~~~----~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  324 (385)
                      +.+.......+.+++..    +. .+|++|||+|...+++.++..++.+ |.+++.|+-  ....+++...+..|++.+.
T Consensus       218 ~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~g-Gt~vlvg~g--~~~~~fpi~~v~~kE~~~~  294 (354)
T KOG0024|consen  218 TDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSG-GTVVLVGMG--AEEIQFPIIDVALKEVDLR  294 (354)
T ss_pred             EeeccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccC-CEEEEeccC--CCccccChhhhhhheeeee
Confidence            87766644233333332    22 4999999999999999999999997 999888863  5678888888889999999


Q ss_pred             EeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe--eEEEEEeCC
Q 016660          325 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC--LRCVIWMGE  385 (385)
Q Consensus       325 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~--~k~vi~~~~  385 (385)
                      |++..   .+.++..+++++++|++.+++++++.|+++++.+||+.+.++..  .|++|..++
T Consensus       295 g~fry---~~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~~  354 (354)
T KOG0024|consen  295 GSFRY---CNGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGPE  354 (354)
T ss_pred             eeeee---ccccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence            98522   13589999999999999999999999999999999999998874  499998764

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.5e-58  Score=406.93  Aligned_cols=347  Identities=26%  Similarity=0.382  Sum_probs=303.3

Q ss_pred             CCCCCeeeeEEEeccCCC--CcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCC
Q 016660           10 TAGKPIQCRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGE   87 (385)
Q Consensus        10 ~~~~~~~~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~   87 (385)
                      ++..|.++++|+++.++.  ++++.++++|+|+++||+|+|+|+|||++|++.++|.|+...+|.++|||++|+|+++|+
T Consensus         3 ~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs   82 (360)
T KOG0023|consen    3 SMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGS   82 (360)
T ss_pred             cccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECC
Confidence            345678899999999998  577799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCEEE-ecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCc
Q 016660           88 NVDGVVEGDVVI-PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (385)
Q Consensus        88 ~v~~~~~GdrV~-~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~  166 (385)
                      +|++|++||||- -....+|+.|+||..+++++|...-+ ...|+..+|              ...+|+||+|+++++.+
T Consensus        83 ~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~-t~~g~~~DG--------------t~~~ggf~~~~~v~~~~  147 (360)
T KOG0023|consen   83 NVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHF-TYNGVYHDG--------------TITQGGFQEYAVVDEVF  147 (360)
T ss_pred             CcccccccCeeeeeEEeccccCccccccCCcccCCceeE-eccccccCC--------------CCccCccceeEEEeeee
Confidence            999999999994 45578899999999999999994222 236777777              55667999999999999


Q ss_pred             eEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc-hHHHHHHHc
Q 016660          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-EKFEIGKRF  245 (385)
Q Consensus       167 ~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~~~~~l  245 (385)
                      +++||++++.+.||.|.|+..|+|.+| ...++.+|++|-|.|+|++|.+++|+||++|. +|+++++++ +|.+.++.|
T Consensus       148 a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~L  225 (360)
T KOG0023|consen  148 AIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSL  225 (360)
T ss_pred             EEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhc
Confidence            999999999999999999999999977 55688899999999997799999999999999 899998887 677778889


Q ss_pred             CCCeEEeCCC-CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEE
Q 016660          246 GVTEFVNSKN-CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  324 (385)
Q Consensus       246 g~~~vv~~~~-~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  324 (385)
                      |++..++..+ .+..+.+...+++++|-|.+.  ....++.++.+++.+ |++|++|...  .++.++.+.++.+.+.|.
T Consensus       226 GAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a~~~~~~~~~~lk~~-Gt~V~vg~p~--~~~~~~~~~lil~~~~I~  300 (360)
T KOG0023|consen  226 GADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--AEHALEPLLGLLKVN-GTLVLVGLPE--KPLKLDTFPLILGRKSIK  300 (360)
T ss_pred             CcceeEEecCCHHHHHHHHHhhcCcceeeeec--cccchHHHHHHhhcC-CEEEEEeCcC--CcccccchhhhcccEEEE
Confidence            9999988874 344444666666667777666  666689999999997 9999999854  378888888999999999


Q ss_pred             EeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          325 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       325 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                      |+.+++.   .+.++++++.+++.+.+.  + +..+++++++||+.|+++.. +|.||+++
T Consensus       301 GS~vG~~---ket~E~Ldf~a~~~ik~~--I-E~v~~~~v~~a~erm~kgdV~yRfVvD~s  355 (360)
T KOG0023|consen  301 GSIVGSR---KETQEALDFVARGLIKSP--I-ELVKLSEVNEAYERMEKGDVRYRFVVDVS  355 (360)
T ss_pred             eeccccH---HHHHHHHHHHHcCCCcCc--e-EEEehhHHHHHHHHHHhcCeeEEEEEEcc
Confidence            9988775   799999999999977665  4 88999999999999999987 59999874

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=4.9e-55  Score=419.93  Aligned_cols=371  Identities=50%  Similarity=0.913  Sum_probs=303.7

Q ss_pred             CCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCC
Q 016660           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      .++++|||+++.++++++.+.++|.|+|.++||+|||.++|||++|++.+.|.+.. ..+|.++|||++|+|+++|++++
T Consensus         6 ~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~   85 (381)
T PLN02740          6 GKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVE   85 (381)
T ss_pred             ccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCC
Confidence            45688999999999877899999999999999999999999999999999887532 35789999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCC-CCCCCCccccccc-CCceeeccccccceeeeEeeccCceE
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP-WMPRDQTSRFKDL-RGETIHHFVSVSSFSEYTVLDIAHVV  168 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~-g~~~~g~~~~~~~-~~~~~~~~~~~g~~~~~v~v~~~~~~  168 (385)
                      +|++||||++.+..+|+.|.+|.++.+++|.+....... .....|..+++.. .+....++...|+|+||++++.+.++
T Consensus        86 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~  165 (381)
T PLN02740         86 DLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVV  165 (381)
T ss_pred             cCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeE
Confidence            999999999999999999999999999999875421000 0000010000000 00000111224699999999999999


Q ss_pred             ECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC
Q 016660          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (385)
Q Consensus       169 ~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~  248 (385)
                      ++|+++++++++++++++.|||+++.+.++++++++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++
T Consensus       166 ~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  245 (381)
T PLN02740        166 KIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGIT  245 (381)
T ss_pred             ECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCc
Confidence            99999999999999999999999887888999999999999999999999999999996799999999999999999999


Q ss_pred             eEEeCCCCC--chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEe
Q 016660          249 EFVNSKNCG--DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  326 (385)
Q Consensus       249 ~vv~~~~~~--~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  326 (385)
                      +++++++..  +...+.+++++++|++||++|.+.++..++.++++++|+++.+|.......++++...++ +++++.|+
T Consensus       246 ~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~~-~~~~i~g~  324 (381)
T PLN02740        246 DFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELF-DGRSITGS  324 (381)
T ss_pred             EEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHHh-cCCeEEEE
Confidence            999877632  334466776668999999999988899999999883399999997643323445444443 68899998


Q ss_pred             eecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          327 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      ..+.+....++.++++++.++.+++.++++++|+|+++++|++.+.+++..|++|++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~~k~~~~~  381 (381)
T PLN02740        325 VFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKALRCLLHL  381 (381)
T ss_pred             ecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCceeEEEeC
Confidence            766554445788999999999998888899999999999999999888878999874

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=1.2e-54  Score=416.08  Aligned_cols=362  Identities=37%  Similarity=0.626  Sum_probs=302.9

Q ss_pred             eeEEEeccCCC--------CcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCC
Q 016660           17 CRAAIATAPGE--------PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (385)
Q Consensus        17 ~~a~~~~~~~~--------~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~   88 (385)
                      |||+++.+++.        .+++.++|.|+|+++||+|||.+++||++|++.+.|.++ ..+|.++|||++|+|+++|++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~   79 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP-RPLPMALGHEAAGVVVEVGEG   79 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC-CCCCccCCccceeEEEEeCCC
Confidence            78999988653        389999999999999999999999999999999988754 356899999999999999999


Q ss_pred             CCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceE
Q 016660           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (385)
Q Consensus        89 v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~  168 (385)
                      +++|++||||++.+..+|+.|.+|+++++++|.........|...+|..+... ++..+.+..+.|+|+||+.++++.++
T Consensus        80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~-~~~~~~~~~g~G~~aey~~v~~~~~~  158 (371)
T cd08281          80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRL-RGGEINHHLGVSAFAEYAVVSRRSVV  158 (371)
T ss_pred             CCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccc-cCcccccccCcccceeeEEecccceE
Confidence            99999999999988889999999999999999765432222322222111000 00001111223699999999999999


Q ss_pred             ECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC
Q 016660          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (385)
Q Consensus       169 ~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~  248 (385)
                      ++|+++++++|+++++++.|||+++.+..+++++++|||.|+|++|++++|+||.+|+++|++++++++|+++++++|++
T Consensus       159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  238 (371)
T cd08281         159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT  238 (371)
T ss_pred             ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc
Confidence            99999999999999999999999887888899999999999999999999999999996799999999999999999999


Q ss_pred             eEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeee
Q 016660          249 EFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  328 (385)
Q Consensus       249 ~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  328 (385)
                      +++++.+.+..+.+++++++++|++||++|....+..++++++++ |+++.+|........+++...++.+++++.|++.
T Consensus       239 ~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~  317 (371)
T cd08281         239 ATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARLSVPALSLVAEERTLKGSYM  317 (371)
T ss_pred             eEeCCCchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEEccCCCCceeeecHHHHhhcCCEEEEEec
Confidence            999988755555577777668999999999888899999999997 9999999754333456777788889999999976


Q ss_pred             cCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEE
Q 016660          329 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  381 (385)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi  381 (385)
                      ..+..++++.++++++++|++++.+++++.|+|+++++||+.+.+++..|.||
T Consensus       318 ~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi  370 (371)
T cd08281         318 GSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVI  370 (371)
T ss_pred             CCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeee
Confidence            65444567899999999999998889999999999999999999888764443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=1.7e-54  Score=414.26  Aligned_cols=365  Identities=46%  Similarity=0.834  Sum_probs=300.4

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++..++++++++++|.|+|.++||+|||.++++|++|++.+.|.++...+|.++|||++|+|+++|+++++|++||
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd   81 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD   81 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence            78999988887799999999999999999999999999999999988765556799999999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCc
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~  176 (385)
                      ||++.+..+|+.|.+|+.+.+++|.........|...+|..++. .+|..+++..+.|+|+||++++++.++++|+++++
T Consensus        82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~  160 (368)
T TIGR02818        82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL  160 (368)
T ss_pred             EEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccc-cCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence            99999999999999999999999986432112233333321111 01111122223469999999999999999999999


Q ss_pred             ccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCC
Q 016660          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (385)
Q Consensus       177 ~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~  256 (385)
                      +++|++++++.|||+++.+..+++++++|||+|+|++|++++|+||.+|+++|++++.+++|+++++++|+++++++.+.
T Consensus       161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~  240 (368)
T TIGR02818       161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDY  240 (368)
T ss_pred             HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEccccc
Confidence            99999999999999988778899999999999999999999999999999779999999999999999999999987642


Q ss_pred             --CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCC
Q 016660          257 --GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAK  334 (385)
Q Consensus       257 --~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~  334 (385)
                        .....+++++++++|++||++|++.++..+++++++++|+++.+|.......+++....++. +..+.|+.......+
T Consensus       241 ~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~  319 (368)
T TIGR02818       241 DKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVT-GRVWRGSAFGGVKGR  319 (368)
T ss_pred             chhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhc-cceEEEeeccCCCcH
Confidence              22334667776689999999999887999999998733999999975433334455555443 455777654433334


Q ss_pred             CcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          335 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       335 ~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      .++.++++++++|++++++++++.|+|+++++|++.+.+++..|++|.+
T Consensus       320 ~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~k~~v~~  368 (368)
T TIGR02818       320 TELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKSIRTVIHY  368 (368)
T ss_pred             HHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCceeEEeeC
Confidence            5789999999999998888999999999999999999887777999875

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=1.3e-54  Score=414.07  Aligned_cols=355  Identities=34%  Similarity=0.577  Sum_probs=303.2

Q ss_pred             eeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        16 ~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      ||||+++.+++++++++++|.|+|.++||+|||.++++|++|++.++|..+ ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN-DEFPFLLGHEAAGVVEAVGEGVTDVAPG   79 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc-ccCCcccccceEEEEEEeCCCCcccCCC
Confidence            599999999998899999999999999999999999999999999888653 3468899999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCC-CCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFK-ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      |||++.+..+|+.|.+|+++++++|...... ...+.. +|         .......+.|+|+||+.++++.++++|+++
T Consensus        80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~-~g---------~~~~~~~~~G~~aey~~v~~~~~~~ip~~~  149 (358)
T TIGR03451        80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLT-DG---------TELSPALGIGAFAEKTLVHAGQCTKVDPAA  149 (358)
T ss_pred             CEEEEccCCCCCCChHHhCcCcccCcCccccccccccc-cC---------cccccccccccccceEEEehhheEECCCCC
Confidence            9999999999999999999999999642210 000000 01         000001124699999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      ++++|+++++.+.|+|+++.+..+++++++|||+|+|++|++++|+|+.+|+++|++++++++|.++++++|++++++++
T Consensus       150 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~  229 (358)
T TIGR03451       150 DPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSS  229 (358)
T ss_pred             ChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCC
Confidence            99999999999999998887778899999999999999999999999999996799999999999999999999999987


Q ss_pred             CCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          255 NCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       255 ~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      +.+....+.+.+++ ++|++||++|++.++..++++++++ |+++.+|........++++..++.+++++.+++......
T Consensus       230 ~~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  308 (358)
T TIGR03451       230 GTDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLP  308 (358)
T ss_pred             CcCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCc
Confidence            75555667788877 8999999999987799999999997 999999975433345677777888899999886543333


Q ss_pred             CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEE
Q 016660          334 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  382 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~  382 (385)
                      .+++.++++++++|++++.+++++.|+|+++.+|++.+++++..|++|.
T Consensus       309 ~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~  357 (358)
T TIGR03451       309 ERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLRSVVE  357 (358)
T ss_pred             HHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcceeEEe
Confidence            5678899999999999988899999999999999999988887788875

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=7e-54  Score=410.68  Aligned_cols=366  Identities=53%  Similarity=0.980  Sum_probs=303.8

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      |+|||+++..++++++++++|+|+|+++||+|||.+++||++|++.++|..+...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (369)
T cd08301           1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP   80 (369)
T ss_pred             CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence            47999999988888999999999999999999999999999999999887655567899999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCC-cccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ-TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g-~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      ||||++.+..+|+.|.+|+++.+++|.........|....+ -.++. ..|...+++...|+|+||+.++++.++++|++
T Consensus        81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~  159 (369)
T cd08301          81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFS-INGKPIYHFVGTSTFSEYTVVHVGCVAKINPE  159 (369)
T ss_pred             CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccc-cCCcceeeeeccccceeEEEEecccEEECCCC
Confidence            99999999999999999999999999875432111221110 00000 00111111223469999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++++++++++.+.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+++|+++++++++.++++++|++.++++
T Consensus       160 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~  239 (369)
T cd08301         160 APLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNP  239 (369)
T ss_pred             CCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcc
Confidence            99999999999999999988788899999999999999999999999999998779999999999999999999999987


Q ss_pred             CCC--CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          254 KNC--GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       254 ~~~--~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      .+.  .....+++++++++|++||++|....+..+++++++++|+++.+|.......++++...++ +++++.|++...+
T Consensus       240 ~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~  318 (369)
T cd08301         240 KDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLL-NGRTLKGTLFGGY  318 (369)
T ss_pred             cccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHh-cCCeEEEEecCCC
Confidence            752  2333466666668999999999988789999999992289999998643334555554444 6899999877666


Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEE
Q 016660          332 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  382 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~  382 (385)
                      ..+.+++++++++.++.+++.+++++.|+|+++++||+.+++++..|++|.
T Consensus       319 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~  369 (369)
T cd08301         319 KPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECLRCILH  369 (369)
T ss_pred             ChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCceeEEeC
Confidence            555678999999999999888889999999999999999999888898873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=1.4e-53  Score=408.31  Aligned_cols=365  Identities=45%  Similarity=0.862  Sum_probs=301.7

Q ss_pred             eeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        16 ~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      +|||+++..+++++++.+.|.|.|.++||+|||.++++|++|++.+.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vG   81 (368)
T cd08300           2 TCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKPG   81 (368)
T ss_pred             cceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCCC
Confidence            58999988887779999999999999999999999999999999998876555679999999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      |||++.+..+|+.|.+|++++++.|.......+.|...+|..++. .+|...++..+.|+|+||+.++++.++++|++++
T Consensus        82 drV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~  160 (368)
T cd08300          82 DHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAP  160 (368)
T ss_pred             CEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccc-cCCcccccccccccceeEEEEchhceEeCCCCCC
Confidence            999999999999999999999999976432111233222211110 1121122223456999999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~  255 (385)
                      +++|+++++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+++|++++++++|.++++++|+++++++++
T Consensus       161 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~  240 (368)
T cd08300         161 LDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKD  240 (368)
T ss_pred             hhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccc
Confidence            99999999999999998877788999999999999999999999999999977999999999999999999999999876


Q ss_pred             CC--chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          256 CG--DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       256 ~~--~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      .+  ....+.+++++++|+|||++|+...+..+++++++++|+++.+|.......+.++...+.. +..+.++..+.+..
T Consensus       241 ~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~  319 (368)
T cd08300         241 HDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLVT-GRVWKGTAFGGWKS  319 (368)
T ss_pred             cchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHhh-cCeEEEEEecccCc
Confidence            42  3344677776689999999998877999999998733999999975322334444444443 45777776665555


Q ss_pred             CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEE
Q 016660          334 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  382 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~  382 (385)
                      .+++.++++++++|++++.++++++|+|+++++||+.+.+++..|++|+
T Consensus       320 ~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~~k~~~~  368 (368)
T cd08300         320 RSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKSIRTVVK  368 (368)
T ss_pred             HHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCCceeeeC
Confidence            6788999999999999988899999999999999999988877798874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=8.8e-53  Score=398.75  Aligned_cols=336  Identities=27%  Similarity=0.426  Sum_probs=292.9

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||+++.+++. ++++++|.|+|.++||+|||.++++|++|++.+.+.+.. ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (339)
T cd08239           1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG   79 (339)
T ss_pred             CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence            68999998875 999999999999999999999999999999988766432 2357899999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      |||++.+..+|+.|++|+++++++|.....  .+|...+|                   +|+||+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~~~G-------------------~~ae~~~v~~~~~~~~P~~~~  138 (339)
T cd08239          80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWNRDG-------------------GHAEYMLVPEKTLIPLPDDLS  138 (339)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccCCCC-------------------cceeEEEechHHeEECCCCCC
Confidence            999999999999999999999999976542  23433344                   999999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~  255 (385)
                      +++|+++++++.|||+++ ....++++++|||+|+|++|++++|+|+.+|+++|++++++++|.++++++|+++++++++
T Consensus       139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~  217 (339)
T cd08239         139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ  217 (339)
T ss_pred             HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc
Confidence            999999999999999987 5678899999999999999999999999999955999999999999999999999999877


Q ss_pred             CCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCccccc-HHHHhhcCcEEEEeeecCCCC
Q 016660          256 CGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS-SFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       256 ~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      .. ...+.+++++ ++|++||++|+...+..++++++++ |+++.+|... ..  .++ ...++.+++++.|++...   
T Consensus       218 ~~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~-~~--~~~~~~~~~~~~~~i~g~~~~~---  289 (339)
T cd08239         218 DD-VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPW-GRLVLVGEGG-EL--TIEVSNDLIRKQRTLIGSWYFS---  289 (339)
T ss_pred             ch-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcCCC-Cc--ccCcHHHHHhCCCEEEEEecCC---
Confidence            54 4457777777 8999999999998778999999997 9999999753 22  233 245677899999986543   


Q ss_pred             CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          334 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      .+++.++++++.+|.+.+.+++++.|+|+++++||+.++++..+|+||++
T Consensus       290 ~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~gKvvi~~  339 (339)
T cd08239         290 VPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFVF  339 (339)
T ss_pred             HHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCCceEEEEeC
Confidence            35799999999999998888999999999999999999887767999864

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.1e-52  Score=402.79  Aligned_cols=363  Identities=50%  Similarity=0.926  Sum_probs=297.1

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      ..|||+++.++++.+++.++|.|.|+++||+|||.++++|++|++.+.+..   .+|.++|||++|+|+++|+++++|++
T Consensus        11 ~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~~~~   87 (378)
T PLN02827         11 ITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTEFEK   87 (378)
T ss_pred             ceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCcccCC
Confidence            569999999988669999999999999999999999999999999887642   45889999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC-CCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~-~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      ||||++.+..+|+.|.+|+++.+++|...... ..|... ++..++. ..|.....+...|+|+||+.++++.++++|++
T Consensus        88 GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~-~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~  165 (378)
T PLN02827         88 GDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPL  165 (378)
T ss_pred             CCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCccccc-ccCcccccccccccceeeEEechhheEECCCC
Confidence            99999999999999999999999999763210 001000 0000000 00000000012369999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++++++.+++++.++|++++...+++++++|||+|+|++|++++|+|+.+|++.|++++.+++|.++++++|+++++++
T Consensus       166 l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~  245 (378)
T PLN02827        166 APLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINP  245 (378)
T ss_pred             CCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcc
Confidence            99999999998999999877777889999999999999999999999999999678889889999999999999999988


Q ss_pred             CCC--CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccH-HHHhhcCcEEEEeeecC
Q 016660          254 KNC--GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS-FEVLHSGKILMGSLFGG  330 (385)
Q Consensus       254 ~~~--~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~i~g~~~~~  330 (385)
                      ++.  .....+++++++++|+|||++|....+..+++++++++|+++.+|.....  ..++. ..++.+++++.|+....
T Consensus       246 ~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~--~~~~~~~~~~~~~~~i~g~~~~~  323 (378)
T PLN02827        246 NDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAK--PEVSAHYGLFLSGRTLKGSLFGG  323 (378)
T ss_pred             cccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCC--ccccccHHHHhcCceEEeeecCC
Confidence            752  33344667776689999999999877899999999933999999975432  33333 35677899999987655


Q ss_pred             CCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEeC
Q 016660          331 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  384 (385)
Q Consensus       331 ~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~~  384 (385)
                      +....++.++++++++|++++.+++++.|+|+++.+|++.+++++..|+||.+.
T Consensus       324 ~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~~k~vi~~~  377 (378)
T PLN02827        324 WKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKCLRCVIHMP  377 (378)
T ss_pred             CchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCceEEEEEec
Confidence            544457889999999999998888999999999999999999888889999875

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=6.5e-52  Score=396.31  Aligned_cols=363  Identities=48%  Similarity=0.912  Sum_probs=302.3

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      |.|||+++.+++++++++++|.|.|.++||+|||.++++|++|++.+.|..+ ..+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08277           1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP   79 (365)
T ss_pred             CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence            3589999998887799999999999999999999999999999999988654 457899999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      ||||++.+..+|+.|.+|.++.+++|...... ..|...++..+.. .+|...+.+.+.|+|+||+.++.+.++++|+++
T Consensus        80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l  157 (365)
T cd08277          80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLMPDGTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA  157 (365)
T ss_pred             CCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccccCCccccc-cCCcccccccccccceeeEEEchhheEECCCCC
Confidence            99999999999999999999999999875432 1233332211111 011111122235699999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      ++++++++++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+++|++++++++|++.++++|+++++++.
T Consensus       158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~  237 (365)
T cd08277         158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK  237 (365)
T ss_pred             CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccc
Confidence            99999999999999999887788899999999999999999999999999997799999999999999999999999877


Q ss_pred             CCC--chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          255 NCG--DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       255 ~~~--~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      +..  ....+++++++++|++||++|+...+..+++++++++|+++.+|... ....+++...++. ++++.|++.+.+.
T Consensus       238 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~-~~~~~~~~~~~~~-~~~i~g~~~~~~~  315 (365)
T cd08277         238 DSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPP-GAELSIRPFQLIL-GRTWKGSFFGGFK  315 (365)
T ss_pred             cccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCC-ccccccCHhHHhh-CCEEEeeecCCCC
Confidence            632  23446666666899999999988778999999987339999999753 2334556656664 8899998776654


Q ss_pred             CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEE
Q 016660          333 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  382 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~  382 (385)
                      .+.++.+++++++++.+++++++++.|+|+++++||+.+++++..|++|.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~i~  365 (365)
T cd08277         316 SRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGECIRTVIT  365 (365)
T ss_pred             hHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCCceEeeC
Confidence            45678999999999999998999999999999999999988876788873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=6e-52  Score=393.37  Aligned_cols=337  Identities=19%  Similarity=0.293  Sum_probs=281.1

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccc-cCCC--CCCCCccccCceeEEEEEeCCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDF--PAVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~-g~~~--~~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      ..+||+++.+++. +++++.|.| ++++||||||.++|||++|+++++ |...  ...+|.++|||++|+|+++  ++++
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~   78 (343)
T PRK09880          3 VKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSG   78 (343)
T ss_pred             ccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCcc
Confidence            4588999999988 999999987 589999999999999999999875 3322  2357999999999999999  7889


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      |++||||++.+..+|+.|.+|+++++++|.....   +|.....              ....|+|+||++++++.++++|
T Consensus        79 ~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~~--------------~~~~G~~aey~~v~~~~~~~~P  141 (343)
T PRK09880         79 LKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMYF--------------PHVDGGFTRYKVVDTAQCIPYP  141 (343)
T ss_pred             CCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eeccccc--------------CCCCCceeeeEEechHHeEECC
Confidence            9999999999999999999999999999986443   2211000              0012499999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv  251 (385)
                      +++++++++. ..++.|||+++. .....++++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++
T Consensus       142 ~~l~~~~aa~-~~~~~~a~~al~-~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi  219 (343)
T PRK09880        142 EKADEKVMAF-AEPLAVAIHAAH-QAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLV  219 (343)
T ss_pred             CCCCHHHHHh-hcHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEe
Confidence            9999876664 447789999774 45666899999999999999999999999997799999999999999999999999


Q ss_pred             eCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          252 NSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       252 ~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      ++++.+... +.. ..+++|+|||++|++.+++.++++++++ |+++.+|...  ...+++...++.+++++.|+...  
T Consensus       220 ~~~~~~~~~-~~~-~~g~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~~~i~g~~~~--  292 (343)
T PRK09880        220 NPQNDDLDH-YKA-EKGYFDVSFEVSGHPSSINTCLEVTRAK-GVMVQVGMGG--APPEFPMMTLIVKEISLKGSFRF--  292 (343)
T ss_pred             cCCcccHHH-Hhc-cCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCC--CCCccCHHHHHhCCcEEEEEeec--
Confidence            987744322 222 1236999999999987799999999997 9999999753  33466777788899999998532  


Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          332 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                        .+++.++++++++|++++.++++++|+|+++++|++.+++++. +|++|.+
T Consensus       293 --~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  343 (343)
T PRK09880        293 --TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF  343 (343)
T ss_pred             --cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence              3679999999999999988899999999999999999988764 6999864

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=1.2e-51  Score=389.90  Aligned_cols=342  Identities=28%  Similarity=0.390  Sum_probs=280.9

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCc-cccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR-ILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~-~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |+++++..++...++.+.+.|.+.+++|+|||.++|||++|++.+++..+....|. ++|||++|+|+++| .++.|++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G   79 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG   79 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence            56667776665344777777778999999999999999999999999866555555 99999999999999 77789999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCC--CCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEE-CCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKI--SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK-VDP  172 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~--~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~-iP~  172 (385)
                      |||++.|..+|+.|.+|+++.+++|.+.++.+  ..+...+|                   +|+||+.+|.+++++ +|+
T Consensus        80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G-------------------~~aEyv~vp~~~~~~~~pd  140 (350)
T COG1063          80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDG-------------------GFAEYVRVPADFNLAKLPD  140 (350)
T ss_pred             CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCC-------------------ceEEEEEeccccCeecCCC
Confidence            99999999999999999999999999555421  11111334                   999999999765555 588


Q ss_pred             CCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEE
Q 016660          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFV  251 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv  251 (385)
                      ++ ..+++++..++.++|++........++++|+|+|+|++|++++++|+..|+++||+++.+++|++++++ +|++.++
T Consensus       141 ~~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~  219 (350)
T COG1063         141 GI-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVV  219 (350)
T ss_pred             CC-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEee
Confidence            88 555555655999997763445555666699999999999999999999999999999999999999999 6667676


Q ss_pred             eCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecC
Q 016660          252 NSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  330 (385)
Q Consensus       252 ~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  330 (385)
                      +..+......+.+.++| ++|++|||+|...++++++++++++ |+++.+|....... .++...++.|++++.|++.. 
T Consensus       220 ~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~g-G~v~~vGv~~~~~~-~~~~~~~~~kel~l~gs~~~-  296 (350)
T COG1063         220 NPSEDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGVYGGEDI-PLPAGLVVSKELTLRGSLRP-  296 (350)
T ss_pred             cCccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCC-CEEEEEeccCCccC-ccCHHHHHhcccEEEeccCC-
Confidence            66554334447788888 9999999999999999999999997 99999998754432 66677888999999999432 


Q ss_pred             CCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC--eeEEEEEe
Q 016660          331 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVIWM  383 (385)
Q Consensus       331 ~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~--~~k~vi~~  383 (385)
                       ..+.+++.+++++++|++++.+++++.++++++++||+.+.++.  ..|++|.+
T Consensus       297 -~~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         297 -SGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             -CCcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence             22368999999999999999999999999999999999998755  34998863

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=3.1e-51  Score=393.45  Aligned_cols=346  Identities=23%  Similarity=0.295  Sum_probs=277.2

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCC-------CCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPN-------SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~-------~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (385)
                      |||+++.+++. ++++++|.|+|+       +|||||||.++|||++|+++++|.++ ..+|.++|||++|+|+++|++|
T Consensus         3 mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~V   80 (393)
T TIGR02819         3 NRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKGRDV   80 (393)
T ss_pred             ceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEcCcc
Confidence            89999999986 999999999874       68999999999999999999988653 3468999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCC---CCCCCCCCCcccccccCCceeeccccccceeeeEeeccC-
Q 016660           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK---ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-  165 (385)
Q Consensus        90 ~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~---~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-  165 (385)
                      ++|++||||++.+..+|+.|.+|+++++++|......   ..+|+...|               .-.|+|+||+.+++. 
T Consensus        81 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~---------------~~~G~~aey~~v~~~~  145 (393)
T TIGR02819        81 EFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG---------------GWVGGQSEYVMVPYAD  145 (393)
T ss_pred             ccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC---------------CCCCceEEEEEechhh
Confidence            9999999999999999999999999999999864310   011221000               002499999999964 


Q ss_pred             -ceEECCCCCCc----ccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH
Q 016660          166 -HVVKVDPTVPP----NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (385)
Q Consensus       166 -~~~~iP~~l~~----~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  240 (385)
                       .++++|++++.    ..++++.+++.|+|+++ ...+++++++|||.|+|++|++++|+|+.+|++.|++++.+++|++
T Consensus       146 ~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~  224 (393)
T TIGR02819       146 FNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLA  224 (393)
T ss_pred             CceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence             79999998754    34677888899999976 4578999999999989999999999999999966777778888999


Q ss_pred             HHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCCh--------------HHHHHHHHHhccCCceEEEeccCCC
Q 016660          241 IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLA--------------SLVQEAYACCRKGWGKTIVLGVDQP  305 (385)
Q Consensus       241 ~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~--------------~~~~~~~~~l~~~~G~~v~~g~~~~  305 (385)
                      +++++|++.+...++.+....+.+++++ ++|++||++|.+              .++++++++++++ |+++.+|....
T Consensus       225 ~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~i~~~G~~~~  303 (393)
T TIGR02819       225 QARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVG-GAIGIPGLYVT  303 (393)
T ss_pred             HHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCC-CEEEEeeecCC
Confidence            9999999754333333344446777776 899999999986              3699999999997 99999998531


Q ss_pred             CC-----------cccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCcee-eeeecchHHHHHHHHhc
Q 016660          306 GS-----------QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT-HEMKFEEINSAFDLLIK  373 (385)
Q Consensus       306 ~~-----------~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~-~~~~l~~~~~a~~~l~~  373 (385)
                      ..           .+++....++.+++++.|..   ....+++.++++++++|++++.++++ +.|+|+++++||+.+.+
T Consensus       304 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~---~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~  380 (393)
T TIGR02819       304 EDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQ---TPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDA  380 (393)
T ss_pred             cccccccccccccccccchHHhhccCceEEecc---CChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhh
Confidence            11           12333445556677777632   11123457899999999999988777 78999999999999988


Q ss_pred             CCeeEEEEEeC
Q 016660          374 GKCLRCVIWMG  384 (385)
Q Consensus       374 ~~~~k~vi~~~  384 (385)
                      +..+|++|.+.
T Consensus       381 ~~~~Kvvi~~~  391 (393)
T TIGR02819       381 GAAKKFVIDPH  391 (393)
T ss_pred             CCceEEEEeCC
Confidence            87789999863

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=5.4e-50  Score=381.83  Aligned_cols=339  Identities=24%  Similarity=0.351  Sum_probs=280.3

Q ss_pred             CCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCC
Q 016660           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      .-||.++++.+.+..+.+++.+++.|.|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~   87 (360)
T PLN02586          8 EHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKK   87 (360)
T ss_pred             hchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCc
Confidence            34566777777776666999999999999999999999999999999998876644467899999999999999999999


Q ss_pred             CCCCCEEEecCC-CCCCCCccccCCCCCCCCCCCCC-CC---CCCCCCCcccccccCCceeeccccccceeeeEeeccCc
Q 016660           92 VVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFK-IS---PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (385)
Q Consensus        92 ~~~GdrV~~~~~-~~~~~~~~c~~~~~~~~~~~~~~-~~---~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~  166 (385)
                      |++||||++.+. .+|+.|.+|+++.+++|....+. ..   .|...+                   |+|+||++++++.
T Consensus        88 ~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~  148 (360)
T PLN02586         88 FKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNY-------------------GGYSDMIVVDQHF  148 (360)
T ss_pred             cCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCC-------------------CccceEEEEchHH
Confidence            999999986654 57999999999999999865431 00   022223                   4999999999999


Q ss_pred             eEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchH-HHHHHHc
Q 016660          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRF  245 (385)
Q Consensus       167 ~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~l  245 (385)
                      ++++|+++++++||++++.+.|+|+++.....++++++|||.|+|++|++++|+||.+|+ +|++++.++++ .+.++++
T Consensus       149 ~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~  227 (360)
T PLN02586        149 VLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRL  227 (360)
T ss_pred             eeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhC
Confidence            999999999999999999999999987666667899999999999999999999999999 67777666554 5567889


Q ss_pred             CCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEE
Q 016660          246 GVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  325 (385)
Q Consensus       246 g~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  325 (385)
                      |+++++++.+.   ..+.+.++ ++|+|||++|...+++.++++++++ |+++.+|...  ...++++..++.++..+.|
T Consensus       228 Ga~~vi~~~~~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~vG~~~--~~~~~~~~~~~~~~~~i~g  300 (360)
T PLN02586        228 GADSFLVSTDP---EKMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVN-GKLITLGLPE--KPLELPIFPLVLGRKLVGG  300 (360)
T ss_pred             CCcEEEcCCCH---HHHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCC-cEEEEeCCCC--CCCccCHHHHHhCCeEEEE
Confidence            99999987652   23455443 6999999999887799999999997 9999999753  2356677777778888888


Q ss_pred             eeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          326 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      +....   .+++.++++++++|++++.  + +.|+|+++++||+.+.+++. +|+||.+
T Consensus       301 ~~~~~---~~~~~~~~~li~~g~i~~~--~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  353 (360)
T PLN02586        301 SDIGG---IKETQEMLDFCAKHNITAD--I-ELIRMDEINTAMERLAKSDVRYRFVIDV  353 (360)
T ss_pred             cCcCC---HHHHHHHHHHHHhCCCCCc--E-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            75432   3578999999999988753  4 68999999999999988875 5999876

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-49  Score=377.36  Aligned_cols=340  Identities=22%  Similarity=0.341  Sum_probs=283.9

Q ss_pred             eeEEEeccCCCCcEEEEeecCCC-CCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||+++.+++. +++.+.|.|.| .++||+|||.++++|++|++.+.... ...+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~~vG   78 (347)
T PRK10309          1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG-AHYYPITLGHEFSGYVEAVGSGVDDLHPG   78 (347)
T ss_pred             CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC-CCCCCcccccceEEEEEEeCCCCCCCCCC
Confidence            68999998876 99999999997 58999999999999999997532211 12358899999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      |||++.+..+|+.|++|+.+.+++|.....   .|....|                   +|+||+.++++.++++|++++
T Consensus        79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~s  136 (347)
T PRK10309         79 DAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSRRDG-------------------GNAEYIVVKRKNLFALPTDMP  136 (347)
T ss_pred             CEEEECCCcCCCCCcchhCcCcccCCCcce---eccCCCC-------------------ccceeEEeehHHeEECcCCCC
Confidence            999999999999999999999999975332   3333333                   999999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~  255 (385)
                      +++|+++. ++.++|+++ +...++++++|||+|+|++|++++|+|+.+|++.|+++++++++.++++++|+++++++++
T Consensus       137 ~~~aa~~~-~~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~  214 (347)
T PRK10309        137 IEDGAFIE-PITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE  214 (347)
T ss_pred             HHHhhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc
Confidence            99998875 455677764 5678899999999999999999999999999966889999999999999999999999877


Q ss_pred             CCchhHHHHhhCC-Ccc-EEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccc-cHHHHhhcCcEEEEeeecCCC
Q 016660          256 CGDKSIIIDMTDG-GAD-YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       256 ~~~~~~i~~~~~g-~~d-~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      .. ...+.+++.+ ++| ++|||+|...++..++++++++ |+++.+|.......++. ++..++.+++++.|++.....
T Consensus       215 ~~-~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  292 (347)
T PRK10309        215 MS-APQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPR-AQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNYSS  292 (347)
T ss_pred             cC-HHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccccC
Confidence            44 4446777766 888 9999999987799999999997 99999997643222221 223567789999998754221


Q ss_pred             --CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          333 --AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       333 --~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                        .+++++++++++++|++++++++++.|+|+++++|++.+.+++. +|+++.+.
T Consensus       293 ~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  347 (347)
T PRK10309        293 PWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQIP  347 (347)
T ss_pred             CcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeCC
Confidence              13578899999999999888999999999999999999988775 59999763

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=5.8e-50  Score=373.56  Aligned_cols=316  Identities=25%  Similarity=0.313  Sum_probs=267.7

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCC-CCCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++..++.|  +++.++|.|.|+++||||||.|+++|+.|..+++|.. +...+|.++|.|++|+|+++|++|++|+
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~   80 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK   80 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence            688998888866  8899999999999999999999999999999999873 3356899999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||||+... .                        .+  .                   .|+|+||+.++++.++++|++
T Consensus        81 ~GdrV~~~~-~------------------------~~--~-------------------~G~~AEy~~v~a~~~~~~P~~  114 (326)
T COG0604          81 VGDRVAALG-G------------------------VG--R-------------------DGGYAEYVVVPADWLVPLPDG  114 (326)
T ss_pred             CCCEEEEcc-C------------------------CC--C-------------------CCcceeEEEecHHHceeCCCC
Confidence            999997542 0                        00  1                   249999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +++++||++++.+.|||+++....+++++++|||+|+ |++|++++|+||++|+ .++++.+++++.++++++|++++++
T Consensus       115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~  193 (326)
T COG0604         115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVIN  193 (326)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEc
Confidence            9999999999999999999999899999999999986 9999999999999998 6666667778778999999999999


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      +++.++.+.+++++++ ++|+|||++|+.. +..++++++++ |+++.+|...+.....++...++.+++.+.|......
T Consensus       194 y~~~~~~~~v~~~t~g~gvDvv~D~vG~~~-~~~~l~~l~~~-G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~  271 (326)
T COG0604         194 YREEDFVEQVRELTGGKGVDVVLDTVGGDT-FAASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSR  271 (326)
T ss_pred             CCcccHHHHHHHHcCCCCceEEEECCCHHH-HHHHHHHhccC-CEEEEEecCCCCCccccCHHHHhhccEEEEEecceec
Confidence            9998888889999999 8999999999998 88899999997 9999999865334555667777778888888765433


Q ss_pred             ---CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHH--HHhcCCeeEEEEEe
Q 016660          332 ---KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD--LLIKGKCLRCVIWM  383 (385)
Q Consensus       332 ---~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~--~l~~~~~~k~vi~~  383 (385)
                         ...+.+.++.+++++|.+++  .++++|||++..++..  .++.+..+|+||++
T Consensus       272 ~~~~~~~~~~~l~~~~~~g~l~~--~i~~~~~l~e~~~a~a~~~~~~~~~GKvvl~~  326 (326)
T COG0604         272 DPEALAEALAELFDLLASGKLKP--VIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV  326 (326)
T ss_pred             chHHHHHHHHHHHHHHHcCCCcc--eeccEechhhhHHHHHHHHcccCCcceEEEeC
Confidence               11345667889999995554  4889999999555444  44423457999874

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=8.2e-49  Score=374.90  Aligned_cols=332  Identities=24%  Similarity=0.360  Sum_probs=274.5

Q ss_pred             EEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCCEE
Q 016660           19 AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV   98 (385)
Q Consensus        19 a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV   98 (385)
                      +++..+...++++.+++.|.|+++||+|||.+++||++|++.+.|.+....+|.++|||++|+|+++|+++++|++||||
T Consensus         9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV   88 (375)
T PLN02178          9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRV   88 (375)
T ss_pred             EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEE
Confidence            34444444458888999999999999999999999999999998876434568899999999999999999999999999


Q ss_pred             EecCCC-CCCCCccccCCCCCCCCCCCCCC----CCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           99 IPHFLA-DCTECVGCRSKKGNLCSAFPFKI----SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        99 ~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~----~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      ++.+.. +|+.|.+|+++++++|....+..    ..|...+                   |+|+||+.++++.++++|++
T Consensus        89 ~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~~lP~~  149 (375)
T PLN02178         89 GVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQ-------------------GGYSDVIVVDHRFVLSIPDG  149 (375)
T ss_pred             EEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCC-------------------CccccEEEEchHHeEECCCC
Confidence            877655 69999999999999998754310    0121122                   49999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhcc-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch-HHHHHHHcCCCeEE
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFV  251 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~-~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~-~~~~~~~lg~~~vv  251 (385)
                      +++++|+++++...|+|+++..... .+++++|+|.|+|++|++++|+||.+|+ +|++++.+++ +.+.++++|+++++
T Consensus       150 ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i  228 (375)
T PLN02178        150 LPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFL  228 (375)
T ss_pred             CCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEE
Confidence            9999999999999999987744432 3689999999999999999999999999 6888876654 47888899999999


Q ss_pred             eCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          252 NSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       252 ~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      ++.+.   ..+.+.++ ++|+|||++|.+.++..++++++++ |+++.+|...  ...+++...++.+++++.|+.... 
T Consensus       229 ~~~~~---~~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~vG~~~--~~~~~~~~~~~~~~~~i~g~~~~~-  300 (375)
T PLN02178        229 VTTDS---QKMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVS-GKLVALGLPE--KPLDLPIFPLVLGRKMVGGSQIGG-  300 (375)
T ss_pred             cCcCH---HHHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCC-CEEEEEccCC--CCCccCHHHHHhCCeEEEEeCccC-
Confidence            87651   33555543 7999999999987789999999997 9999999753  335667777888999999986543 


Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          332 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                        .+++.++++++++|++++.  + +.|+|+++++||+.+.+++. +|+|+.+
T Consensus       301 --~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  348 (375)
T PLN02178        301 --MKETQEMLEFCAKHKIVSD--I-ELIKMSDINSAMDRLAKSDVRYRFVIDV  348 (375)
T ss_pred             --HHHHHHHHHHHHhCCCccc--E-EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence              2578999999999987654  5 67999999999999988876 5999976

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=1e-48  Score=372.14  Aligned_cols=332  Identities=24%  Similarity=0.396  Sum_probs=282.2

Q ss_pred             EEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCC-CCCCCCccccCceeEEEEEeCCCCCCCCCCCEE
Q 016660           20 AIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVESVGENVDGVVEGDVV   98 (385)
Q Consensus        20 ~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~~~~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV   98 (385)
                      +++.++++++++++.|.|.|+++||+|||.++++|++|++.+.+.+ ....+|.++|||++|+|+++|++++.+ +||||
T Consensus         2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV   80 (349)
T TIGR03201         2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV   80 (349)
T ss_pred             ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence            4567777778999999999999999999999999999999874432 234568999999999999999999887 99999


Q ss_pred             EecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCC------
Q 016660           99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP------  172 (385)
Q Consensus        99 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~------  172 (385)
                      ++.+..+|+.|.+|+++++++|.....   .|...+|                   +|+||+.++.+.++++|+      
T Consensus        81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~ae~~~v~~~~~~~ip~~~~~~~  138 (349)
T TIGR03201        81 IVPAVIPCGECELCKTGRGTICRAQKM---PGNDMQG-------------------GFASHIVVPAKGLCVVDEARLAAA  138 (349)
T ss_pred             EECCCCCCCCChhhhCcCcccCCCCCc---cCcCCCC-------------------cccceEEechHHeEECCccccccc
Confidence            999999999999999999999975433   2333334                   999999999999999999      


Q ss_pred             CCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +++++.++++++++.|+|+++. ...++++++|+|+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++++++
T Consensus       139 ~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~  216 (349)
T TIGR03201       139 GLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLTLN  216 (349)
T ss_pred             CCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceEec
Confidence            8999999999999999999764 5788999999999999999999999999999 7999999999999999999999998


Q ss_pred             CCCCC---chhHHHHhhCC-Ccc----EEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEE
Q 016660          253 SKNCG---DKSIIIDMTDG-GAD----YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  324 (385)
Q Consensus       253 ~~~~~---~~~~i~~~~~g-~~d----~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  324 (385)
                      +.+..   ....+++++++ ++|    +||||+|+..+++.++++++++ |+++.+|....  ...+++..++.+++++.
T Consensus       217 ~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~~~~~~~  293 (349)
T TIGR03201       217 PKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMA--KTEYRLSNLMAFHARAL  293 (349)
T ss_pred             CccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcC-CeEEEECcCCC--CcccCHHHHhhcccEEE
Confidence            77642   22236667776 776    8999999988888999999997 99999997542  24566667777788998


Q ss_pred             EeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          325 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       325 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      |++...   .+++.++++++++|++++.++++ .|+|+++++||+.+.+++. +|+++++
T Consensus       294 g~~~~~---~~~~~~~~~~i~~g~i~~~~~i~-~~~l~~~~~A~~~~~~~~~~~k~~~~~  349 (349)
T TIGR03201       294 GNWGCP---PDRYPAALDLVLDGKIQLGPFVE-RRPLDQIEHVFAAAHHHKLKRRAILTP  349 (349)
T ss_pred             EEecCC---HHHHHHHHHHHHcCCCCcccceE-EecHHHHHHHHHHHHcCCccceEEecC
Confidence            886432   35799999999999998887775 7999999999999988875 4888753

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=1.4e-48  Score=372.16  Aligned_cols=334  Identities=24%  Similarity=0.327  Sum_probs=266.2

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC---CCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++..++.++++.++|.|+|.++||+|||.|++||++|++.++|.+..   ..+|.++|||++|+|+++|++ ++|+
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~   79 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS   79 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence            588998865544999999999999999999999999999999999887532   246789999999999999999 9999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCcccccccCCceeeccccccceeeeEeeccCceEECCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~  172 (385)
                      +||||++.+..+|+.|.+|+++++++|....+. ..|.. .+                   |+|+||++++++.++++|+
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~-------------------G~~aey~~~~~~~~~~~P~  139 (355)
T cd08230          80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLH-------------------GFMREYFVDDPEYLVKVPP  139 (355)
T ss_pred             CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCC-------------------ccceeEEEeccccEEECCC
Confidence            999999999999999999999999999754321 01211 12                   4999999999999999999


Q ss_pred             CCCcccccccccchhhhhhhhh------hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC---CchHHHHHH
Q 016660          173 TVPPNRACLLSCGVSTGVGAAW------RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGK  243 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~------~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~---~~~~~~~~~  243 (385)
                      +++ + ++.+.+++.+++.++.      ...+++++++|||+|+|++|++++|+||++|+ +|+++++   +++|+++++
T Consensus       140 ~~~-~-~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~  216 (355)
T cd08230         140 SLA-D-VGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE  216 (355)
T ss_pred             CCC-c-ceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH
Confidence            998 3 3444445555544322      22236789999999999999999999999999 7888877   688999999


Q ss_pred             HcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCccccc----HHHHhhc
Q 016660          244 RFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS----SFEVLHS  319 (385)
Q Consensus       244 ~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~----~~~~~~~  319 (385)
                      ++|++. +++.+.+..+  . ...+++|+|||++|.+..+..++++++++ |+++.+|........+++    ...++.|
T Consensus       217 ~~Ga~~-v~~~~~~~~~--~-~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~k  291 (355)
T cd08230         217 ELGATY-VNSSKTPVAE--V-KLVGEFDLIIEATGVPPLAFEALPALAPN-GVVILFGVPGGGREFEVDGGELNRDLVLG  291 (355)
T ss_pred             HcCCEE-ecCCccchhh--h-hhcCCCCEEEECcCCHHHHHHHHHHccCC-cEEEEEecCCCCCccccChhhhhhhHhhc
Confidence            999987 4665533222  1 12237999999999987789999999997 999999986542344444    3456778


Q ss_pred             CcEEEEeeecCCCCCCcHHHHHHHHHcCCC----CCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          320 GKILMGSLFGGLKAKSDIPILLKRYMDKEL----ELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       320 ~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      ++++.|+....   .+++.++++++.++.+    .++++++++|+|+++.+||+.++++. .|++|++
T Consensus       292 ~~~i~g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~K~v~~~  355 (355)
T cd08230         292 NKALVGSVNAN---KRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE-IKVVIEW  355 (355)
T ss_pred             CcEEEEecCCc---hhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC-eEEEeeC
Confidence            99999985332   3678899999988762    35677899999999999999887654 5999864

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=6.1e-48  Score=368.68  Aligned_cols=347  Identities=29%  Similarity=0.414  Sum_probs=294.2

Q ss_pred             eEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCC------
Q 016660           18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG------   91 (385)
Q Consensus        18 ~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~------   91 (385)
                      ||+++.++++++++.+.|.|.|+++||+|||.++++|++|+....|.++...+|.++|||++|+|+++|+++++      
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~   81 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP   81 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence            78999998877999999999999999999999999999999998887653457889999999999999999986      


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC-ceEEC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-HVVKV  170 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~i  170 (385)
                      |++||+|++.+..+|+.|.+|+.+..++|....+   +|...+-        +    .....|+|++|+.++++ .++++
T Consensus        82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~---~~~~~~~--------~----~~~~~g~~a~~~~v~~~~~~~~l  146 (361)
T cd08231          82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK---YGHEASC--------D----DPHLSGGYAEHIYLPPGTAIVRV  146 (361)
T ss_pred             cCCCCEEEEcccCCCCCChhHhCcCccccccchh---ccccccc--------c----CCCCCcccceEEEecCCCceEEC
Confidence            9999999999999999999999999999987654   2221100        0    00012499999999986 79999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v  250 (385)
                      |+++++..++++++++.|||+++.+....+++++|||+|+|++|++++++|+.+|+++|+++++++++.++++++|++.+
T Consensus       147 P~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~v  226 (361)
T cd08231         147 PDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADAT  226 (361)
T ss_pred             CCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeE
Confidence            99999999999989999999988666666799999999999999999999999999778999899999999999999999


Q ss_pred             EeCCCCCch---hHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEe
Q 016660          251 VNSKNCGDK---SIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  326 (385)
Q Consensus       251 v~~~~~~~~---~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  326 (385)
                      +++++....   ..+.+.+++ ++|++||++|+...+..++++++++ |+++.+|........+++...++.+++++.++
T Consensus       227 i~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  305 (361)
T cd08231         227 IDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAGTVPLDPERIVRKNLTIIGV  305 (361)
T ss_pred             EcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccC-CEEEEEcCCCCCCccccCHHHHhhcccEEEEc
Confidence            988764433   246777777 8999999999877789999999997 99999997643334556666678889999988


Q ss_pred             eecCCCCCCcHHHHHHHHHcC--CCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          327 LFGGLKAKSDIPILLKRYMDK--ELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~g--~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      +...   .+++.++++++.++  .+.+.+++++.|+++++++||+.++++..+|++|.+
T Consensus       306 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~~k~vi~~  361 (361)
T cd08231         306 HNYD---PSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTALKVVIDP  361 (361)
T ss_pred             ccCC---chhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCceEEEeCC
Confidence            6432   36788999999888  666777888999999999999999888777999864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=1.5e-47  Score=366.93  Aligned_cols=367  Identities=43%  Similarity=0.764  Sum_probs=297.2

Q ss_pred             CCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCC
Q 016660           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (385)
Q Consensus        13 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (385)
                      +-.+|||+++..++++++++++|.|+|.++||+|||.++++|++|++.+.|.+. ..+|.++|||++|+|+++|++++.|
T Consensus         4 ~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~   82 (373)
T cd08299           4 KVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTV   82 (373)
T ss_pred             ccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccC
Confidence            345699999988887799999999999999999999999999999999988753 3568899999999999999999999


Q ss_pred             CCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCC
Q 016660           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (385)
Q Consensus        93 ~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~  172 (385)
                      ++||+|++.+..+|+.|.+|++++++.|.........|...++..+.+ .+|...+++.+.|+|+||++++++.++++|+
T Consensus        83 ~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~  161 (373)
T cd08299          83 KPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKIDA  161 (373)
T ss_pred             CCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccc-cCCcccccccCCCcccceEEecccceeeCCC
Confidence            999999999999999999999999999986543111122211111110 1111222233357999999999999999999


Q ss_pred             CCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      ++++++++++++++.|||+++....+++++++|||+|+|++|++++++|+.+|+++|+++++++++++.++++|++++++
T Consensus       162 ~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~  241 (373)
T cd08299         162 AAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECIN  241 (373)
T ss_pred             CCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEec
Confidence            99999999999999999998878889999999999999999999999999999877999999999999999999999998


Q ss_pred             CCCCC--chhHHHHhhCCCccEEEEccCChHHHHHHHHHh-ccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeec
Q 016660          253 SKNCG--DKSIIIDMTDGGADYCFECVGLASLVQEAYACC-RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  329 (385)
Q Consensus       253 ~~~~~--~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  329 (385)
                      ..+..  ....+.+++.+++|+++|++|++..+..++..+ +.+ |+++.+|.......++++... +.++.++.+++..
T Consensus       242 ~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~-G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~~~~~~  319 (373)
T cd08299         242 PQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGY-GVSVIVGVPPSSQNLSINPML-LLTGRTWKGAVFG  319 (373)
T ss_pred             ccccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCC-CEEEEEccCCCCceeecCHHH-HhcCCeEEEEEec
Confidence            77533  333356666668999999999877788877765 565 999999975432344555443 3467899998776


Q ss_pred             CCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          330 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       330 ~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      .+..++++.++++.+.++.+.+++++++.|+++++.+|++.+.+++..|+++++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~~k~~~~~  373 (373)
T cd08299         320 GWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKSIRTVLTF  373 (373)
T ss_pred             CCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCcceEEEeC
Confidence            665456777888888888777777788999999999999999887777888864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=6.6e-48  Score=368.67  Aligned_cols=361  Identities=41%  Similarity=0.757  Sum_probs=310.5

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      +||+++.++++++++.+.|.|.+.+++|+|||.++++|+.|++...+.+. ..+|.++|||++|+|+++|++++++++||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd   79 (365)
T cd05279           1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD   79 (365)
T ss_pred             CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence            57899998887799999999999999999999999999999998888654 34578999999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCc
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~  176 (385)
                      +|++.+..+|+.|.+|+++.+++|.....+++.|...+|..+|+- +|...+++.+.|+|++|+.++++.++++|+++++
T Consensus        80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~  158 (365)
T cd05279          80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTC-KGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL  158 (365)
T ss_pred             EEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeec-cCCccccccccccccceEEecCCceEECCCCCCH
Confidence            999999999999999999999999887765555665666555553 5555666667789999999999999999999999


Q ss_pred             ccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCC
Q 016660          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (385)
Q Consensus       177 ~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~  256 (385)
                      ++++++.+++.+||+++.+.+++.++++|||+|+|++|++++++|+.+|++.|+++++++++.++++++|++++++.++.
T Consensus       159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~  238 (365)
T cd05279         159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQ  238 (365)
T ss_pred             HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccc
Confidence            99999999999999988888899999999999989999999999999999668888889999999999999999988774


Q ss_pred             --CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhc-cCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          257 --GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCR-KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       257 --~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                        +....+++++++++|++||++|....+..++++++ ++ |+++.+|.........++...+ .++.++.|+++..+..
T Consensus       239 ~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~  316 (365)
T cd05279         239 DKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGG-GTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVFGGWKS  316 (365)
T ss_pred             cchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCC-CEEEEEecCCCCCceeeCHHHH-hcCCeEEEEeccCCch
Confidence              33344666665589999999998777899999999 96 9999998753334566666666 6788888887666655


Q ss_pred             CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEE
Q 016660          334 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  381 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi  381 (385)
                      .+.+..++++++++.+++.+++++.|+++++.+||+.+++++..|+++
T Consensus       317 ~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~  364 (365)
T cd05279         317 KDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESIRTIL  364 (365)
T ss_pred             HhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCceeeee
Confidence            678899999999998887777889999999999999998877778776

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=2.7e-48  Score=365.84  Aligned_cols=321  Identities=21%  Similarity=0.253  Sum_probs=272.4

Q ss_pred             EEeccCC----CCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           20 AIATAPG----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        20 ~~~~~~~----~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      +.+..++    .+++++++|.|.|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   81 (329)
T TIGR02822         2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG   81 (329)
T ss_pred             eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence            4455554    238999999999999999999999999999999998876544457899999999999999999999999


Q ss_pred             CEEEecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        96 drV~~~~~-~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      |||++.+. .+|+.|.+|.++++++|....+   .|...+|                   +|+||+.++++.++++|+++
T Consensus        82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~  139 (329)
T TIGR02822        82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWDTDG-------------------GYAEYTTVPAAFAYRLPTGY  139 (329)
T ss_pred             CEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcccCC-------------------cceeEEEeccccEEECCCCC
Confidence            99987764 4799999999999999976543   3433334                   99999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      ++++++.+++.+.|||+++ ..++++++++|||+|+|++|++++|+|+.+|+ +|++++++++|.++++++|+++++++.
T Consensus       140 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~  217 (329)
T TIGR02822       140 DDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAY  217 (329)
T ss_pred             CHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceecccc
Confidence            9999999999999999987 46789999999999999999999999999999 799999999999999999999998864


Q ss_pred             CCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCC
Q 016660          255 NCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAK  334 (385)
Q Consensus       255 ~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~  334 (385)
                      +..         .+++|+++++.+...++..++++++++ |+++.+|..... ...++...++.+++++.+++...   +
T Consensus       218 ~~~---------~~~~d~~i~~~~~~~~~~~~~~~l~~~-G~~v~~G~~~~~-~~~~~~~~~~~~~~~i~g~~~~~---~  283 (329)
T TIGR02822       218 DTP---------PEPLDAAILFAPAGGLVPPALEALDRG-GVLAVAGIHLTD-TPPLNYQRHLFYERQIRSVTSNT---R  283 (329)
T ss_pred             ccC---------cccceEEEECCCcHHHHHHHHHhhCCC-cEEEEEeccCcc-CCCCCHHHHhhCCcEEEEeecCC---H
Confidence            311         126899999998888899999999997 999999974322 23456666777899999886332   3


Q ss_pred             CcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEE
Q 016660          335 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  381 (385)
Q Consensus       335 ~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi  381 (385)
                      +++.++++++++|++.   ++++.|+|+++++|++.+.+++. +|+||
T Consensus       284 ~~~~~~~~l~~~g~i~---~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl  328 (329)
T TIGR02822       284 ADAREFLELAAQHGVR---VTTHTYPLSEADRALRDLKAGRFDGAAVL  328 (329)
T ss_pred             HHHHHHHHHHHhCCCe---eEEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence            5788899999999775   35799999999999999988876 49887

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=2.4e-47  Score=363.20  Aligned_cols=335  Identities=25%  Similarity=0.432  Sum_probs=288.5

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCC-CC----------CCCCccccCceeEEEEEe
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FP----------AVFPRILGHEAIGVVESV   85 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~~----------~~~p~~~G~e~~G~V~~v   85 (385)
                      |||+++.+++. +++.++|.|+|.++||+|||.++++|++|++.+.+.. ..          ..+|.++|||++|+|+++
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   79 (351)
T cd08233           1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV   79 (351)
T ss_pred             CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence            68999998876 9999999999999999999999999999988665321 10          136889999999999999


Q ss_pred             CCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC
Q 016660           86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (385)
Q Consensus        86 G~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~  165 (385)
                      |+++++|++||+|+..+..+|+.|.+|+++..++|....+   .|...                  ..|+|++|+.++.+
T Consensus        80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------~~g~~a~~~~~~~~  138 (351)
T cd08233          80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGG------------------GGGGFAEYVVVPAY  138 (351)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCC------------------CCCceeeEEEechH
Confidence            9999999999999999999999999999999999964332   22211                  02499999999999


Q ss_pred             ceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc
Q 016660          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (385)
Q Consensus       166 ~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l  245 (385)
                      .++++|+++++++++++ .++.|||+++ ...+++++++|||+|+|.+|++++|+|+.+|+++|+++++++++.++++++
T Consensus       139 ~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~  216 (351)
T cd08233         139 HVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL  216 (351)
T ss_pred             HeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            99999999999998876 5778999987 778899999999999999999999999999997899998999999999999


Q ss_pred             CCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEE
Q 016660          246 GVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  324 (385)
Q Consensus       246 g~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  324 (385)
                      |++.++++++.++...+++++++ ++|++||++|+...++.++++++++ |+++.+|...  ...+++...++.+++++.
T Consensus       217 ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~i~  293 (351)
T cd08233         217 GATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWE--KPISFNPNDLVLKEKTLT  293 (351)
T ss_pred             CCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-CEEEEEccCC--CCCccCHHHHHhhCcEEE
Confidence            99999998886666667778777 7999999999877789999999997 9999999754  345677777888999999


Q ss_pred             EeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchH-HHHHHHHhcCCe--eEEEE
Q 016660          325 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI-NSAFDLLIKGKC--LRCVI  381 (385)
Q Consensus       325 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~-~~a~~~l~~~~~--~k~vi  381 (385)
                      |++...   .+++.+++++++++++++.+++++.|+++++ ++|++.+.+++.  +|+||
T Consensus       294 g~~~~~---~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~  350 (351)
T cd08233         294 GSICYT---REDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILV  350 (351)
T ss_pred             EEeccC---cchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEe
Confidence            986432   3689999999999999888888999999996 799999888774  69887

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=4.2e-47  Score=363.14  Aligned_cols=364  Identities=33%  Similarity=0.583  Sum_probs=298.0

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      |+|||+++.++++++++.+.+.|.+.++||+|||.++++|++|++...+.++ ..+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP   79 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence            5799999999877799999999999999999999999999999999888654 346889999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceee-ccccccceeeeEeeccCceEECCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH-HFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~-~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      ||+|++.+. .|+.|.+|+.+..++|.........|...+|.--+...+|..++ ++...|+|++|+.+++++++++|++
T Consensus        80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~  158 (365)
T cd08278          80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKD  158 (365)
T ss_pred             CCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCCC
Confidence            999998765 89999999999999998654322233333221111111111111 1223569999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++++++.+++++.|||.++.....++++++|||+|+|++|++++|+|+.+|+++|++++++++|.+.++++|++.++++
T Consensus       159 ~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~  238 (365)
T cd08278         159 VPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINP  238 (365)
T ss_pred             CCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecC
Confidence            99999999999999999988788889999999999889999999999999999779999999999999999999999998


Q ss_pred             CCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      ++......+.++++.++|+++|++|+...+..++++++++ |+++.+|.........++...++.+++++.++.......
T Consensus       239 ~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (365)
T cd08278         239 KEEDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDSVP  317 (365)
T ss_pred             CCcCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccC-CEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCCcCh
Confidence            7755555577777338999999999877789999999997 999999975333345666666667899998876543333


Q ss_pred             CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEE
Q 016660          334 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  382 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~  382 (385)
                      .+.+.+++++++++.+.+.+++ ..|+++++++|++.++++...|++|+
T Consensus       318 ~~~~~~~~~~l~~g~l~~~~~~-~~~~l~~~~~a~~~~~~~~~~k~~~~  365 (365)
T cd08278         318 QEFIPRLIELYRQGKFPFDKLV-TFYPFEDINQAIADSESGKVIKPVLR  365 (365)
T ss_pred             HHHHHHHHHHHHcCCCChHHhe-EEecHHHHHHHHHHHHCCCceEEEEC
Confidence            4567888999999988554444 58999999999999988877798874

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=7.2e-47  Score=360.23  Aligned_cols=341  Identities=22%  Similarity=0.337  Sum_probs=281.0

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      ..++|+++.++++++++.+++.|.|+++||+|||.++++|++|++.+.|.+....+|.++|||++|+|+++|+++++|++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~~   87 (357)
T PLN02514          8 KKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTV   87 (357)
T ss_pred             ceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcccccC
Confidence            34899999999998999999999999999999999999999999998887644456889999999999999999999999


Q ss_pred             CCEEEecCCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           95 GDVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        95 GdrV~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      ||+|++.+.. .|+.|.+|.++.+++|....+....++ ..|              ....|+|+||+.++.+.++++|++
T Consensus        88 Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~-~~g--------------~~~~G~~aey~~v~~~~~~~iP~~  152 (357)
T PLN02514         88 GDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVY-TDG--------------KPTQGGFASAMVVDQKFVVKIPEG  152 (357)
T ss_pred             CCEEEEcCccccCCCChhHhCCCcccCCCccccccccc-cCC--------------ccCCCccccEEEEchHHeEECCCC
Confidence            9999876644 699999999999999976532100000 001              111249999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH-HHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~~vv~  252 (385)
                      +++++|+.+++.+.|||+++......+++++|+|+|+|++|++++|+||.+|+ +|++++.++++.+ .++++|++++++
T Consensus       153 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~  231 (357)
T PLN02514        153 MAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLV  231 (357)
T ss_pred             CCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEec
Confidence            99999999999999999987665566899999999999999999999999999 6777777776654 446799988877


Q ss_pred             CCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          253 SKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      +.+.   ..+.+.+ +++|++||++|...+++.++++++++ |+++.+|...  ...+++...++.+++++.|++...  
T Consensus       232 ~~~~---~~~~~~~-~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~i~g~~~~~--  302 (357)
T PLN02514        232 SSDA---AEMQEAA-DSLDYIIDTVPVFHPLEPYLSLLKLD-GKLILMGVIN--TPLQFVTPMLMLGRKVITGSFIGS--  302 (357)
T ss_pred             CCCh---HHHHHhc-CCCcEEEECCCchHHHHHHHHHhccC-CEEEEECCCC--CCCcccHHHHhhCCcEEEEEecCC--
Confidence            6541   2244444 36999999999877799999999997 9999999764  234666777888899999987543  


Q ss_pred             CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          333 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                       ..++.++++++++|++.  +++ +.|+|+++.+||+.+.+++. +|++|.++
T Consensus       303 -~~~~~~~~~~~~~g~l~--~~i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~~  351 (357)
T PLN02514        303 -MKETEEMLEFCKEKGLT--SMI-EVVKMDYVNTAFERLEKNDVRYRFVVDVA  351 (357)
T ss_pred             -HHHHHHHHHHHHhCCCc--CcE-EEEcHHHHHHHHHHHHcCCCceeEEEEcc
Confidence             25789999999999654  456 68999999999999988876 59999875

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=5.4e-47  Score=358.84  Aligned_cols=323  Identities=21%  Similarity=0.231  Sum_probs=258.7

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC----CCCCccccCceeEEEEEeCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP----AVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~----~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      |..+++++++|+. +++.+.|.|. +++||+|||.++|||++|+++++|.+..    ..+|.++|||++|+|+++|.+  
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--   76 (341)
T cd08237           1 MINQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--   76 (341)
T ss_pred             CcccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence            3467899999987 9999999995 9999999999999999999999887532    357999999999999998874  


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      +|++||||++.+..+|+ |.+|.  ..++|....+   .|...+|                   +|+||+++++++++++
T Consensus        77 ~~~vGdrV~~~~~~~~~-~~~~~--~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v  131 (341)
T cd08237          77 TYKVGTKVVMVPNTPVE-KDEII--PENYLPSSRF---RSSGYDG-------------------FMQDYVFLPPDRLVKL  131 (341)
T ss_pred             ccCCCCEEEECCCCCch-hcccc--hhccCCCcce---eEecCCC-------------------ceEEEEEEchHHeEEC
Confidence            79999999999888887 54663  5577865443   2333334                   9999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhh--hccCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCEEEEEcCCchHHHHHHHcCC
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGV  247 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~--~~~~~~~~~VlI~G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~lg~  247 (385)
                      |+++++++||++. +++++|+++..  ...++++++|||.|+|++|++++|+|+. .|..+|++++++++|+++++++++
T Consensus       132 P~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~  210 (341)
T cd08237         132 PDNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE  210 (341)
T ss_pred             CCCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc
Confidence            9999998887665 78889987643  3456889999999999999999999986 665589999999999999988776


Q ss_pred             CeEEeCCCCCchhHHHHhhCC-CccEEEEccCC---hHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEE
Q 016660          248 TEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL---ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKIL  323 (385)
Q Consensus       248 ~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i  323 (385)
                      +..++           .+..+ ++|+|||++|+   +.+++.++++++++ |+++.+|...  ...++++..++.+++++
T Consensus       211 ~~~~~-----------~~~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~~~i  276 (341)
T cd08237         211 TYLID-----------DIPEDLAVDHAFECVGGRGSQSAINQIIDYIRPQ-GTIGLMGVSE--YPVPINTRMVLEKGLTL  276 (341)
T ss_pred             eeehh-----------hhhhccCCcEEEECCCCCccHHHHHHHHHhCcCC-cEEEEEeecC--CCcccCHHHHhhCceEE
Confidence            53321           11223 69999999994   46689999999997 9999999753  34566777788899999


Q ss_pred             EEeeecCCCCCCcHHHHHHHHHcC---CCCCCCceeeeeecc---hHHHHHHHHhcCCeeEEEEEeC
Q 016660          324 MGSLFGGLKAKSDIPILLKRYMDK---ELELDKFVTHEMKFE---EINSAFDLLIKGKCLRCVIWMG  384 (385)
Q Consensus       324 ~g~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~i~~~~~l~---~~~~a~~~l~~~~~~k~vi~~~  384 (385)
                      .|+....   .+++++++++++++   ...+++++++.|+|+   ++.++|+.+.++..+|+||+++
T Consensus       277 ~g~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~~~gKvvi~~~  340 (341)
T cd08237         277 VGSSRST---REDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTNSWGKTVMEWE  340 (341)
T ss_pred             EEecccC---HHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhcCcceEEEEee
Confidence            9985322   35789999999998   346778899999985   5666666665555579999874

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=7.6e-46  Score=359.29  Aligned_cols=331  Identities=20%  Similarity=0.227  Sum_probs=268.3

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeeccccccccc-ccCCCC------CCCCccccCceeEEEEEeCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW-KMKDFP------AVFPRILGHEAIGVVESVGE   87 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~-~g~~~~------~~~p~~~G~e~~G~V~~vG~   87 (385)
                      |.|||+++.+++. +++.++|.|+|+++||+|||.++|||++|++.+ .|....      ..+|.++|||++|+|+++|+
T Consensus         1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            5689999999986 999999999999999999999999999999976 443211      23688999999999999999


Q ss_pred             CCC-CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC-
Q 016660           88 NVD-GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-  165 (385)
Q Consensus        88 ~v~-~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-  165 (385)
                      +++ +|++||||++.+...|+.|.+|. +             +|...+|                   +|+||++++++ 
T Consensus        80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~-------------~g~~~~G-------------------~~aey~~v~~~~  126 (410)
T cd08238          80 KWQGKYKPGQRFVIQPALILPDGPSCP-G-------------YSYTYPG-------------------GLATYHIIPNEV  126 (410)
T ss_pred             CccCCCCCCCEEEEcCCcCCCCCCCCC-C-------------ccccCCC-------------------cceEEEEecHHh
Confidence            998 59999999999999999988772 1             2222334                   99999999987 


Q ss_pred             ---ceEECCCCCCccccccc-c--cchhhhhhhh--------hhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcC--CCE
Q 016660          166 ---HVVKVDPTVPPNRACLL-S--CGVSTGVGAA--------WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCG--ATR  228 (385)
Q Consensus       166 ---~~~~iP~~l~~~~aa~l-~--~~~~ta~~al--------~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G--~~~  228 (385)
                         .++++|+++++++|+++ +  |. .+++.++        .+..+++++++|+|+|+ |++|++++|+|+.+|  +.+
T Consensus       127 ~~~~~~~lP~~l~~~~aal~epl~~~-~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~  205 (410)
T cd08238         127 MEQDCLLIYEGDGYAEASLVEPLSCV-IGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSL  205 (410)
T ss_pred             ccCCeEECCCCCCHHHHhhcchHHHH-HHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCce
Confidence               68999999999998865 2  22 2233322        24567899999999985 999999999999975  457


Q ss_pred             EEEEcCCchHHHHHHHc--------CCC-eEEeCCC-CCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceE
Q 016660          229 IIGVDVISEKFEIGKRF--------GVT-EFVNSKN-CGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT  297 (385)
Q Consensus       229 vi~~~~~~~~~~~~~~l--------g~~-~vv~~~~-~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~  297 (385)
                      |++++++++|+++++++        |++ .++++++ .+....+++++++ ++|++||++|....++.++++++++ |++
T Consensus       206 Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~-G~~  284 (410)
T cd08238         206 LVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPD-GCL  284 (410)
T ss_pred             EEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccC-CeE
Confidence            99999999999999997        776 5677754 2344457778877 8999999999888899999999997 888


Q ss_pred             EEeccCC-CCCcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe
Q 016660          298 IVLGVDQ-PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC  376 (385)
Q Consensus       298 v~~g~~~-~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~  376 (385)
                      +.++... .....+++...++.+++++.|+....   .++++++++++++|++++.+++++.|+|+++++|++.+..+..
T Consensus       285 v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~  361 (410)
T cd08238         285 NFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGN---TDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLPGIPG  361 (410)
T ss_pred             EEEEccCCCCccccccHHHhhhcCcEEEEeCCCC---HHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhhccCC
Confidence            7765422 12234677777888999999986432   3579999999999999998899999999999999999984445


Q ss_pred             eEEEEEeC
Q 016660          377 LRCVIWMG  384 (385)
Q Consensus       377 ~k~vi~~~  384 (385)
                      +|+||.++
T Consensus       362 gKvvl~~~  369 (410)
T cd08238         362 GKKLIYTQ  369 (410)
T ss_pred             ceEEEECC
Confidence            69999764

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=2.8e-45  Score=348.99  Aligned_cols=343  Identities=25%  Similarity=0.302  Sum_probs=284.0

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++.+++. +++.+.|.|.+.++||+|||.++++|++|++.+.+.+....+|.++|||++|+|+++|+++++|++||
T Consensus         1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd   79 (351)
T cd08285           1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD   79 (351)
T ss_pred             CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence            78999999886 89999999999999999999999999999998877665445688999999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC--ceEECCCCC
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTV  174 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~--~~~~iP~~l  174 (385)
                      +|+..+..+|+.|..|..+.++.|.........+...                   .|+|+||+.++.+  .++++|+++
T Consensus        80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~-------------------~g~~~~y~~v~~~~~~~~~lP~~~  140 (351)
T cd08285          80 RVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFK-------------------DGVFAEYFHVNDADANLAPLPDGL  140 (351)
T ss_pred             EEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCC-------------------CcceeEEEEcchhhCceEECCCCC
Confidence            9999888899999999999999997532100011111                   2499999999974  899999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      ++++++.++..+.|||+++ ....++++++|||+|+|++|++++|+|+.+|++.|+++++++++.++++++|++++++++
T Consensus       141 ~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~  219 (351)
T cd08285         141 TDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYK  219 (351)
T ss_pred             CHHHhhhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCC
Confidence            9999999998999999974 677899999999999899999999999999997799999999999999999999999988


Q ss_pred             CCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccH--HHHhhcCcEEEEeeecCC
Q 016660          255 NCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS--FEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       255 ~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~--~~~~~~~~~i~g~~~~~~  331 (385)
                      +.+....+..++.+ ++|++||++|+...+..++++++++ |+++.+|.........++.  .....+..++.+....  
T Consensus       220 ~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  296 (351)
T cd08285         220 NGDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCP--  296 (351)
T ss_pred             CCCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCCCceeecChhhhhhhccccEEEEeecC--
Confidence            75555567777766 8999999999887789999999997 9999999764322233332  2223345666654321  


Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCc-eeeeeecchHHHHHHHHhcCCe--eEEEEEe
Q 016660          332 KAKSDIPILLKRYMDKELELDKF-VTHEMKFEEINSAFDLLIKGKC--LRCVIWM  383 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~~~~~~-i~~~~~l~~~~~a~~~l~~~~~--~k~vi~~  383 (385)
                      ...+++.++++++++|++.+..+ .++.++++++++|++.+++++.  .|++|++
T Consensus       297 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  351 (351)
T cd08285         297 GGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF  351 (351)
T ss_pred             CccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence            12467999999999998888443 4456899999999999988763  5999864

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=4.4e-45  Score=346.05  Aligned_cols=335  Identities=20%  Similarity=0.396  Sum_probs=280.3

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++.+++. +++.++|.|+|.++||+||+.++++|++|++.+.|.++...+|.++|||++|+|+++|++++.|++||
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   79 (339)
T PRK10083          1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE   79 (339)
T ss_pred             CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence            68999999885 99999999999999999999999999999999888765445689999999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCc
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~  176 (385)
                      +|++.+..+|+.|.+|.++++++|.+..+   .+...                   .|+|+||+.++.+.++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------~g~~~~~~~~~~~~~~~ip~~~~~  137 (339)
T PRK10083         80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVHR-------------------DGGFSEYAVVPAKNAHRIPDAIAD  137 (339)
T ss_pred             EEEEccccCCCCCccccCcCcccCCCCce---EEEcc-------------------CCcceeeEEechHHeEECcCCCCH
Confidence            99999999999999999999999964332   12212                   249999999999999999999999


Q ss_pred             ccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC
Q 016660          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (385)
Q Consensus       177 ~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~  255 (385)
                      +.++ +...+.++|. +....+++++++|+|+|+|++|++++|+|+. +|++.++++++++++.++++++|+++++++++
T Consensus       138 ~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~  215 (339)
T PRK10083        138 QYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ  215 (339)
T ss_pred             HHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc
Confidence            8876 4457788885 5677889999999999999999999999996 69977888999999999999999999998876


Q ss_pred             CCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCC
Q 016660          256 CGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAK  334 (385)
Q Consensus       256 ~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~  334 (385)
                      ......+..  .+ ++|++||++|++..+..++++++++ |+++.+|....  ...++...+..+++++.++..    ..
T Consensus       216 ~~~~~~~~~--~g~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~----~~  286 (339)
T PRK10083        216 EPLGEALEE--KGIKPTLIIDAACHPSILEEAVTLASPA-ARIVLMGFSSE--PSEIVQQGITGKELSIFSSRL----NA  286 (339)
T ss_pred             ccHHHHHhc--CCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC--CceecHHHHhhcceEEEEEec----Ch
Confidence            443333322  23 5689999999887799999999997 99999997532  333444455567888877653    23


Q ss_pred             CcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC--eeEEEEEeCC
Q 016660          335 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVIWMGE  385 (385)
Q Consensus       335 ~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~--~~k~vi~~~~  385 (385)
                      +.+.+++++++++.+.+.+++++.|+++++++|++.++++.  .+|+++++.|
T Consensus       287 ~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~  339 (339)
T PRK10083        287 NKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE  339 (339)
T ss_pred             hhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence            57889999999998887666789999999999999997543  3699998865

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=2.1e-46  Score=318.86  Aligned_cols=318  Identities=23%  Similarity=0.280  Sum_probs=277.0

Q ss_pred             CCCeeeeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCC
Q 016660           12 GKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (385)
                      ..|+..|-+++.+.|.+  +++++.|.|+|.++|++||-.|+|+|..|.-..+|.+.+...|.+||-|.+|+|+++|++|
T Consensus         4 ~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gv   83 (336)
T KOG1197|consen    4 ASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGV   83 (336)
T ss_pred             CCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCc
Confidence            35677899998888865  9999999999999999999999999999999999999777889999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEE
Q 016660           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (385)
Q Consensus        90 ~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~  169 (385)
                      +++++||||+..                            +  .                   .|.|+|++.+|...+++
T Consensus        84 tdrkvGDrVayl----------------------------~--~-------------------~g~yaee~~vP~~kv~~  114 (336)
T KOG1197|consen   84 TDRKVGDRVAYL----------------------------N--P-------------------FGAYAEEVTVPSVKVFK  114 (336)
T ss_pred             cccccccEEEEe----------------------------c--c-------------------chhhheeccccceeecc
Confidence            999999999632                            1  1                   13899999999999999


Q ss_pred             CCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC
Q 016660          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (385)
Q Consensus       170 iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~  248 (385)
                      +|+.+++.+||++.+.++|||.-+++..++++|++||++.+ |++|++++|++++.|+ .+|++.++.+|.+.+++.|+.
T Consensus       115 vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~  193 (336)
T KOG1197|consen  115 VPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAE  193 (336)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCc
Confidence            99999999999999899999998888889999999999965 9999999999999999 899999999999999999999


Q ss_pred             eEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEee
Q 016660          249 EFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  327 (385)
Q Consensus       249 ~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  327 (385)
                      +.++++.++....+.+.++| |+|+++|.+|... ++.++.+|++. |.+|.+|+.. ...-+++...+..+++++...+
T Consensus       194 h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG~dt-~~~sl~~Lk~~-G~mVSfG~as-gl~~p~~l~~ls~k~l~lvrps  270 (336)
T KOG1197|consen  194 HPIDYSTEDYVDEVKKITNGKGVDAVYDSVGKDT-FAKSLAALKPM-GKMVSFGNAS-GLIDPIPLNQLSPKALQLVRPS  270 (336)
T ss_pred             ceeeccchhHHHHHHhccCCCCceeeeccccchh-hHHHHHHhccC-ceEEEecccc-CCCCCeehhhcChhhhhhccHh
Confidence            99999998888889999999 9999999999988 99999999997 9999999863 3344555555656777766554


Q ss_pred             ecCCCC-CCc----HHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          328 FGGLKA-KSD----IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       328 ~~~~~~-~~~----~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                      +..|.. +..    ..+++.++.+|.+++.  |.++|||+++.+|+..++++.. +|+++.+.
T Consensus       271 l~gYi~g~~el~~~v~rl~alvnsg~lk~~--I~~~ypls~vadA~~diesrktvGkvlLlp~  331 (336)
T KOG1197|consen  271 LLGYIDGEVELVSYVARLFALVNSGHLKIH--IDHVYPLSKVADAHADIESRKTVGKVLLLPG  331 (336)
T ss_pred             hhcccCCHHHHHHHHHHHHHHhhcCcccee--eeeecchHHHHHHHHHHHhhhccceEEEeCC
Confidence            444432 222    3456777788977777  9999999999999999988775 69998764

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.9e-44  Score=340.82  Aligned_cols=331  Identities=23%  Similarity=0.370  Sum_probs=282.8

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++.+++.++++.++|.|.+.++||+|||.++++|++|+..+.|..+...+|.++|||++|+|+++|+++++|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd   80 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD   80 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence            68999999966699999999999999999999999999999998888654445688999999999999999999999999


Q ss_pred             EEEecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        97 rV~~~~-~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      +|++.+ ...|+.|.+|..++++.|....+   .|....|                   +|++|+.++.+.++++|++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~~~g-------------------~~a~~~~v~~~~~~~lp~~~~  138 (333)
T cd08296          81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVTRDG-------------------GYAEYMLAPAEALARIPDDLD  138 (333)
T ss_pred             EEEeccccCCCCCChhhhCcCcccCCCCCc---cCcccCC-------------------cceeEEEEchhheEeCCCCCC
Confidence            998754 56799999999999999986554   3333233                   999999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~  255 (385)
                      +.+++.+++.+.|||+++.. ..+.++++|||+|+|++|++++++|+.+|+ +|+++++++++++.++++|+++++++.+
T Consensus       139 ~~~aa~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~  216 (333)
T cd08296         139 AAEAAPLLCAGVTTFNALRN-SGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSK  216 (333)
T ss_pred             HHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCC
Confidence            99999999999999998744 589999999999999999999999999999 7999999999999999999999999877


Q ss_pred             CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCC
Q 016660          256 CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS  335 (385)
Q Consensus       256 ~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  335 (385)
                      .+....+.++  +++|++||++|....+..++++++++ |+++.+|...  ...+++...++.+++++.+.....   ..
T Consensus       217 ~~~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~~---~~  288 (333)
T cd08296         217 EDVAEALQEL--GGAKLILATAPNAKAISALVGGLAPR-GKLLILGAAG--EPVAVSPLQLIMGRKSIHGWPSGT---AL  288 (333)
T ss_pred             ccHHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccC-CEEEEEecCC--CCCCcCHHHHhhcccEEEEeCcCC---HH
Confidence            5544444444  36999999998777799999999997 9999999754  345667677778999999986322   35


Q ss_pred             cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          336 DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       336 ~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      ++..++++++++.+.  +++ +.|+++++.+||+.+.+++. +|+|++
T Consensus       289 ~~~~~~~~~~~~~l~--~~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~  333 (333)
T cd08296         289 DSEDTLKFSALHGVR--PMV-ETFPLEKANEAYDRMMSGKARFRVVLT  333 (333)
T ss_pred             HHHHHHHHHHhCCCC--ceE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence            788888888888654  345 68999999999999998886 598874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=4e-44  Score=342.49  Aligned_cols=361  Identities=43%  Similarity=0.694  Sum_probs=296.2

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++.+++.++++.++|.|.+.+++|+|||.++++|+.|+..+.+.++ ..+|.++|+|++|+|+++|++++.|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD   79 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence            68999999988899999999999999999999999999999998888664 35677899999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCc
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~  176 (385)
                      +|+..+..+|++|.+|++++.++|...... -+|...++..+... .|.......+.|+|++|+.++.+.++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  157 (363)
T cd08279          80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGI-LGGQLPDGTRRFTA-DGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL  157 (363)
T ss_pred             EEEECCCCCCCCChhhcCCCcccCcccccc-cccccCCCcccccc-cCccccccccCccceeeEEeccccEEECCCCCCh
Confidence            999999999999999999999999765320 01100111000000 0000000123469999999999999999999999


Q ss_pred             ccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCC
Q 016660          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (385)
Q Consensus       177 ~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~  256 (385)
                      ++++++++.+.|||.++....++.++++|||+|+|++|++++++|+..|+++|+++++++++.++++++|+++++++++.
T Consensus       158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~  237 (363)
T cd08279         158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASED  237 (363)
T ss_pred             HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCc
Confidence            99999999999999988888899999999999889999999999999999559999899999999999999999988875


Q ss_pred             CchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCC
Q 016660          257 GDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS  335 (385)
Q Consensus       257 ~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  335 (385)
                      .....+.+++.+ ++|+++|++++...+..++++++++ |+++.+|.........++...+..++..+.++.+......+
T Consensus       238 ~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (363)
T cd08279         238 DAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANPRR  316 (363)
T ss_pred             cHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcC-CeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcCcHH
Confidence            555557777765 8999999999877789999999997 99999987543344566666666678888887655444456


Q ss_pred             cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEE
Q 016660          336 DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  381 (385)
Q Consensus       336 ~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi  381 (385)
                      .+++++++++++.+.+.+++++.|+++++.+|++.+.+++..|.||
T Consensus       317 ~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         317 DIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI  362 (363)
T ss_pred             HHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence            7889999999998877666778999999999999998887666654

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=1.1e-43  Score=341.79  Aligned_cols=354  Identities=26%  Similarity=0.389  Sum_probs=287.7

Q ss_pred             eeEEEeccCCCCcEEEEeecCCC-CCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||+++.+++. +++.++|.|.| .+++|+||+.++++|++|+..+.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   79 (386)
T cd08283           1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG   79 (386)
T ss_pred             CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence            68999998865 99999999998 49999999999999999999998887655568899999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCC----CCCCCCCCcccccccCCceeeccccccceeeeEeeccC--ceEE
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKI----SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVK  169 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~----~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~--~~~~  169 (385)
                      |+|+..+..+|+.|.+|+.+..++|++.....    .+|....|...+++.     . ....|+|++|++++.+  .+++
T Consensus        80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~g~~~~~~~v~~~~~~~~~  153 (386)
T cd08283          80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHL-----T-GGYAGGQAEYVRVPFADVGPFK  153 (386)
T ss_pred             CEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccc-----c-CCCCCeeEEEEEcccccCeEEE
Confidence            99999998899999999999999998644310    001110010000000     0 0113599999999987  8999


Q ss_pred             CCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe
Q 016660          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (385)
Q Consensus       170 iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~  249 (385)
                      +|+++++++|+++++.+.|||+++ ...++.++++|||+|+|.+|++++++|+..|+.+|+++++++++.+++++++...
T Consensus       154 lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~  232 (386)
T cd08283         154 IPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAE  232 (386)
T ss_pred             CCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE
Confidence            999999999999999999999987 7788999999999998999999999999999866999999999999999985446


Q ss_pred             EEeCCCCC-chhHHHHhhCC-CccEEEEccCCh---------------------HHHHHHHHHhccCCceEEEeccCCCC
Q 016660          250 FVNSKNCG-DKSIIIDMTDG-GADYCFECVGLA---------------------SLVQEAYACCRKGWGKTIVLGVDQPG  306 (385)
Q Consensus       250 vv~~~~~~-~~~~i~~~~~g-~~d~vid~~g~~---------------------~~~~~~~~~l~~~~G~~v~~g~~~~~  306 (385)
                      ++++.+.. +...+++++++ ++|++||++|+.                     ..+++++++++++ |+++.+|.....
T Consensus       233 vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~g~~~~~  311 (386)
T cd08283         233 TINFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKG-GTVSIIGVYGGT  311 (386)
T ss_pred             EEcCCcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccC-CEEEEEcCCCCC
Confidence            77776643 44557777777 899999999853                     3578899999997 999999875432


Q ss_pred             CcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC--eeEEEEEe
Q 016660          307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVIWM  383 (385)
Q Consensus       307 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~--~~k~vi~~  383 (385)
                       ...++...++.+++++.+....   ..+.+.+++++++++++.+.+++++.|+++++.+|++.+.++.  .+|++|++
T Consensus       312 -~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  386 (386)
T cd08283         312 -VNKFPIGAAMNKGLTLRMGQTH---VQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLKP  386 (386)
T ss_pred             -cCccCHHHHHhCCcEEEeccCC---chHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEEEEecC
Confidence             3345555567789998887422   2357888999999998887766778999999999999998876  35999863

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=2e-44  Score=336.58  Aligned_cols=303  Identities=19%  Similarity=0.270  Sum_probs=244.2

Q ss_pred             eeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecc-cccccccccCCCC---CCCCccccCceeEEEEEeCCCCCC
Q 016660           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLC-HSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        16 ~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~-~~D~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      ++||+++.+++. +++.+.|.|+|+++||+|||.+++|| ++|++.++|.++.   ..+|.++|||++|+|+++|+++ +
T Consensus         1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~   78 (308)
T TIGR01202         1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G   78 (308)
T ss_pred             CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence            378999998876 99999999999999999999999996 7999988887643   3579999999999999999998 6


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      |++||||++.    |..|.+|..+                 ..                   |+|+||+.++++.++++|
T Consensus        79 ~~vGdrV~~~----~~~c~~~~~~-----------------~~-------------------G~~aey~~v~~~~~~~ip  118 (308)
T TIGR01202        79 FRPGDRVFVP----GSNCYEDVRG-----------------LF-------------------GGASKRLVTPASRVCRLD  118 (308)
T ss_pred             CCCCCEEEEe----Cccccccccc-----------------cC-------------------CcccceEEcCHHHceeCC
Confidence            9999999873    2233332110                 01                   399999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv  251 (385)
                      ++++++. ++++ ...|||+++.+ . ..++++|||+|+|++|++++|+||++|++.|++++.+++|++.+.++   .++
T Consensus       119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i  191 (308)
T TIGR01202       119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVL  191 (308)
T ss_pred             CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---ccc
Confidence            9999754 5555 57899997744 3 34688999999999999999999999997677887777777766543   455


Q ss_pred             eCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          252 NSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       252 ~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      |+.+.         .+.++|+||||+|+..+++.++++++++ |+++++|...  ....++...++.|++++.++...  
T Consensus       192 ~~~~~---------~~~g~Dvvid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~i~~~~~~--  257 (308)
T TIGR01202       192 DPEKD---------PRRDYRAIYDASGDPSLIDTLVRRLAKG-GEIVLAGFYT--EPVNFDFVPAFMKEARLRIAAEW--  257 (308)
T ss_pred             Chhhc---------cCCCCCEEEECCCCHHHHHHHHHhhhcC-cEEEEEeecC--CCcccccchhhhcceEEEEeccc--
Confidence            54331         1237999999999988789999999997 9999999753  23456666677888999887432  


Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC-eeEEEEE
Q 016660          332 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-CLRCVIW  382 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~-~~k~vi~  382 (385)
                       ..++++++++++++|++++++++++.|+|+++++|++.+.++. .+|++|+
T Consensus       258 -~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       258 -QPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             -chhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence             2367999999999999999889999999999999999876654 4699874

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=1.7e-43  Score=336.03  Aligned_cols=338  Identities=28%  Similarity=0.414  Sum_probs=288.9

Q ss_pred             eeEEEeccCCCCcEEEEeecCCC-CCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||+++.+++. +++.+.|.|+| .++||+|||.++++|+.|+..+.|.+....+|.++|||++|+|+++|++++++++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G   79 (345)
T cd08286           1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG   79 (345)
T ss_pred             CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence            68999998886 99999999986 79999999999999999999998876554558899999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC--ceEECCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~--~~~~iP~~  173 (385)
                      |+|++.+...|+.|.+|..+..+.|....+.  .|...+                   |+|++|+.++.+  .++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------g~~~~~~~v~~~~~~~~~lp~~  138 (345)
T cd08286          80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNLID-------------------GTQAEYVRIPHADNSLYKLPEG  138 (345)
T ss_pred             CEEEECCcCCCCCChHHHCcCcccCCCcccc--cccccC-------------------CeeeeEEEcccccCceEECCCC
Confidence            9999999999999999999999999765432  122223                   399999999987  89999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++.+++.+++.+.|||.++....++.++++|||.|+|++|++++|+|+.+|..+|+++++++++.++++++|++.++++
T Consensus       139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~  218 (345)
T cd08286         139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNS  218 (345)
T ss_pred             CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceecc
Confidence            99999999999999999877777889999999999899999999999999994488889888999999999999999998


Q ss_pred             CCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      ++.+....+.+++.+ ++|++||++|....+..+++.++++ |+++.+|...  ....+++..++.+++++.+..+.   
T Consensus       219 ~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~---  292 (345)
T cd08286         219 AKGDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHG--KPVDLHLEKLWIKNITITTGLVD---  292 (345)
T ss_pred             ccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-cEEEEecccC--CCCCcCHHHHhhcCcEEEeecCc---
Confidence            875555557777776 8999999999877789999999997 9999999653  23556666667789999875322   


Q ss_pred             CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcC---CeeEEEEEe
Q 016660          333 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG---KCLRCVIWM  383 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~---~~~k~vi~~  383 (385)
                       .+.+..++++++++.+.+.+++++.|++++++++++.+...   ...|++|++
T Consensus       293 -~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         293 -TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             -hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence             24688889999999887777678999999999999999875   245999864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=1.8e-43  Score=336.02  Aligned_cols=341  Identities=29%  Similarity=0.411  Sum_probs=284.0

Q ss_pred             eeEEEeccCCCCcEEEEeecCCC-CCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||+++.+++. +.+.+.|.|.| .+++|+|||.++++|+.|++.+.+.++...+|.++|+|++|+|+++|+++++|++|
T Consensus         1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (347)
T cd05278           1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG   79 (347)
T ss_pred             CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence            58999998877 89999999999 99999999999999999999988877655668899999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC--ceEECCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~--~~~~iP~~  173 (385)
                      |+|+..+..+|+.|.+|+++..++|.......+.+.                   ...|+|++|++++.+  +++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~g~~~~~~~v~~~~~~~~~lP~~  140 (347)
T cd05278          80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGN-------------------RIDGGQAEYVRVPYADMNLAKIPDG  140 (347)
T ss_pred             CEEEecCCCCCCCChhHhCcCcccCcCCCccccccc-------------------CCCCeeeEEEEecchhCeEEECCCC
Confidence            999999999999999999999999976442111111                   123499999999987  89999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++++++.+++++.|||+++ ...+++++++|||.|+|.+|++++|+|+.+|+.+|+++++++++.+.++++|++.++++
T Consensus       141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~  219 (347)
T cd05278         141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINP  219 (347)
T ss_pred             CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcC
Confidence            99999999999999999987 66789999999998889999999999999997578888888899999999999999998


Q ss_pred             CCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      ++......++.++++ ++|++||++++...+..++++++++ |+++.+|........ ......+.+++++.+.....  
T Consensus       220 ~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--  295 (347)
T cd05278         220 KNGDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPL-PLLGEWFGKNLTFKTGLVPV--  295 (347)
T ss_pred             CcchHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcC-CEEEEEcCCCCCccc-CccchhhhceeEEEeeccCc--
Confidence            875555557777776 8999999999866689999999997 999999864322111 11122345677777754222  


Q ss_pred             CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe--eEEEEEe
Q 016660          333 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC--LRCVIWM  383 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~--~k~vi~~  383 (385)
                       .+.+.+++++++++.+.+.+++...+++++++++++.+..++.  .|+++++
T Consensus       296 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~  347 (347)
T cd05278         296 -RARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP  347 (347)
T ss_pred             -hhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence             4678899999999988765556788999999999999887765  4888763

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=3.6e-43  Score=333.06  Aligned_cols=333  Identities=29%  Similarity=0.435  Sum_probs=285.6

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC---CCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++.++++++++.+.+.|.+.+++|+|||.++++|++|+....|.+.   ...+|.++|+|++|+|+++|+++.+|+
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~   80 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK   80 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence            68999998877799999999999999999999999999999998887654   245578999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|+..+...|+.|..|+.+..++|....+   .|...+|                   +|++|+.++.++++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~P~~  138 (340)
T cd05284          81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIGTDG-------------------GFAEYLLVPSRRLVKLPRG  138 (340)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCccCCC-------------------cceeeEEecHHHeEECCCC
Confidence            99999999999999999999999999987775   4444444                   9999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhh-ccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHHcCCCeEE
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFGVTEFV  251 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~-~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~lg~~~vv  251 (385)
                      +++++++.+++.+.|||+++... ..+.++++|||+|+|.+|++++++|+.+| + +|+++++++++.+.++++|+++++
T Consensus       139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~~~  217 (340)
T cd05284         139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADHVL  217 (340)
T ss_pred             CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcEEE
Confidence            99999999999999999987665 46888999999999889999999999999 6 788888889999999999999999


Q ss_pred             eCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecC
Q 016660          252 NSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  330 (385)
Q Consensus       252 ~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  330 (385)
                      ++++. +...+.+++++ ++|+++|++|+......++++++++ |+++.+|....   ..++....+.+++++.+.... 
T Consensus       218 ~~~~~-~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~---~~~~~~~~~~~~~~~~~~~~~-  291 (340)
T cd05284         218 NASDD-VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGH---GRLPTSDLVPTEISVIGSLWG-  291 (340)
T ss_pred             cCCcc-HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEEcCCCC---CccCHHHhhhcceEEEEEecc-
Confidence            98875 55557777776 8999999999877789999999997 99999986532   344444445789998887533 


Q ss_pred             CCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          331 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       331 ~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                        ..+.+.+++++++++.+.+   ..+.|+++++++|++.+.+++. +|+++.+
T Consensus       292 --~~~~~~~~~~~l~~g~l~~---~~~~~~~~~~~~a~~~~~~~~~~gkvv~~~  340 (340)
T cd05284         292 --TRAELVEVVALAESGKVKV---EITKFPLEDANEALDRLREGRVTGRAVLVP  340 (340)
T ss_pred             --cHHHHHHHHHHHHhCCCCc---ceEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence              2357888999999997764   2467999999999999988775 4888753

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=6.6e-43  Score=334.63  Aligned_cols=361  Identities=30%  Similarity=0.483  Sum_probs=293.1

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCC---CC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG---VV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~---~~   93 (385)
                      |||+++..++.++++.+.|.|.++++||+|||.++++|++|++...+.++. .+|.++|||++|+|+.+|+++++   |+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~   79 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS   79 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence            689999998777999999999999999999999999999999988886643 56789999999999999999988   99


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCC-CCCCCcccccccCCceeeccccccceeeeEeeccCceEECCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g-~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~  172 (385)
                      +||+|+..+..+|+.|.+|+.+..++|.+..+++..+ ...+|...+....+..+ .....|+|++|+.++.+.++++|+
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~P~  158 (367)
T cd08263          80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPV-YMYSMGGLAEYAVVPATALAPLPE  158 (367)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCcc-ccccCCcceeEEEechhhEEECCC
Confidence            9999999999999999999999999998765321111 11111000000000000 001235999999999999999999


Q ss_pred             CCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      ++++.+++.+++++.|||.++.....+.++++|||+|+|.+|++++++|+..|+++|++++.++++.+.++++|++.+++
T Consensus       159 ~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~  238 (367)
T cd08263         159 SLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVN  238 (367)
T ss_pred             CCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEec
Confidence            99999999999999999998877778899999999988999999999999999955998888999999999999999999


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      +++.++...+++.+++ ++|++||++++...+..++++++++ |+++.+|.........++...++.+++++.+++..  
T Consensus       239 ~~~~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  315 (367)
T cd08263         239 AAKEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGA--  315 (367)
T ss_pred             CCcccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcC-CEEEEEccCCCCCccccCHHHHhhCCeEEEecCCC--
Confidence            8876666667777766 8999999999974589999999997 99999986543334456666666788888885321  


Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          332 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      ...+.+..++++++++.+.+.+++++.++++++.++++.+.+++. +|+||+
T Consensus       316 ~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~  367 (367)
T cd08263         316 RPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE  367 (367)
T ss_pred             CcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence            123578889999999988776667789999999999999988775 588874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.1e-43  Score=333.36  Aligned_cols=335  Identities=26%  Similarity=0.421  Sum_probs=279.8

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC---------CCCCccccCceeEEEEEeCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---------AVFPRILGHEAIGVVESVGE   87 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~---------~~~p~~~G~e~~G~V~~vG~   87 (385)
                      |||+++.+++. +++++.|.|++.+++|+||+.++++|+.|+..+.|....         ..+|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~   79 (350)
T cd08256           1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE   79 (350)
T ss_pred             CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence            68999998886 999999999999999999999999999999988775311         14577899999999999999


Q ss_pred             CCC--CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC
Q 016660           88 NVD--GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (385)
Q Consensus        88 ~v~--~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~  165 (385)
                      +++  +|++||+|+..+..+|+.|.+|+++..++|.....   +|+..                 ...|+|++|+.++++
T Consensus        80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~-----------------~~~g~~~~~~~~~~~  139 (350)
T cd08256          80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQN-----------------NVNGGMAEYMRFPKE  139 (350)
T ss_pred             CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeecc-----------------CCCCcceeeEEcccc
Confidence            999  89999999999999999999999999999964321   22210                 012499999999988


Q ss_pred             -ceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH
Q 016660          166 -HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (385)
Q Consensus       166 -~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  244 (385)
                       .++++|++++++.++++ .++.|+|+++ +..+++++++|||.|+|++|++++++|+.+|+..++++++++++.+++++
T Consensus       140 ~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  217 (350)
T cd08256         140 AIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK  217 (350)
T ss_pred             cceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH
Confidence             57899999999999988 7889999987 77889999999997789999999999999998778889889999999999


Q ss_pred             cCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHH-hhcCcE
Q 016660          245 FGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV-LHSGKI  322 (385)
Q Consensus       245 lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~  322 (385)
                      +|++.++++++......+.+++++ ++|++||++|+...+..++++++++ |+++.+|.....  ..++...+ ..++++
T Consensus       218 ~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~~  294 (350)
T cd08256         218 FGADVVLNPPEVDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKL-GRFVEFSVFGDP--VTVDWSIIGDRKELD  294 (350)
T ss_pred             cCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEccCCCC--CccChhHhhcccccE
Confidence            999999988765555667777777 8999999999776689999999997 999999865422  23333333 346778


Q ss_pred             EEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEE
Q 016660          323 LMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  381 (385)
Q Consensus       323 i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi  381 (385)
                      +.++....    ..+.+++++++++.+.+.+++++.|+++++++|++.+++++. +|+++
T Consensus       295 i~~~~~~~----~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~  350 (350)
T cd08256         295 VLGSHLGP----YCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL  350 (350)
T ss_pred             EEEeccCc----hhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence            88775332    468889999999988876557899999999999999988765 48764

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.2e-42  Score=330.11  Aligned_cols=339  Identities=28%  Similarity=0.398  Sum_probs=288.8

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++.+++.++++.+.|.|.+.+++|+||+.++++|+.|+..+.|......+|.++|+|++|+|+++|++++.|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd   80 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD   80 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence            79999998887899999999999999999999999999999999888765455688999999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC--ceEECCCCC
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTV  174 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~--~~~~iP~~l  174 (385)
                      +|+..+..+|+.|.+|..+..++|....+   .|...+                   |+|++|+.++.+  +++++|+++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~~~iP~~~  138 (345)
T cd08260          81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFTHP-------------------GSFAEYVAVPRADVNLVRLPDDV  138 (345)
T ss_pred             EEEECCCCCCCCCccccCcCcccCCCCcc---cccCCC-------------------CcceeEEEcccccCceEECCCCC
Confidence            99987778899999999999999986432   222223                   399999999975  899999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      ++++++.+++.+.|||+++....++.++++|+|+|+|++|++++++|+..|+ +|+++.+++++.+.++++|++++++++
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~  217 (345)
T cd08260         139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNAS  217 (345)
T ss_pred             CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEccc
Confidence            9999999999999999988777889999999999999999999999999999 889998899999999999999999887


Q ss_pred             C-CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCc-ccccHHHHhhcCcEEEEeeecCCC
Q 016660          255 N-CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ-LSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       255 ~-~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      + .+....+.++..+++|++||++|+...+..++++++++ |+++.+|....... ..++...++.++.++.+....   
T Consensus       218 ~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  293 (345)
T cd08260         218 EVEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGM---  293 (345)
T ss_pred             cchhHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcC---
Confidence            6 45555566666558999999999776688999999997 99999987542222 455556666788999887532   


Q ss_pred             CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          333 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      ..+.+++++++++++.+.+.+++++.++++++++|++.+..++. +|+|++
T Consensus       294 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~  344 (345)
T cd08260         294 PAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT  344 (345)
T ss_pred             CHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence            24678889999999988776656789999999999999987765 487763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=5.2e-43  Score=303.46  Aligned_cols=319  Identities=21%  Similarity=0.282  Sum_probs=266.5

Q ss_pred             CCCeeeeEEEeccCCCC---cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCC
Q 016660           12 GKPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGE   87 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~   87 (385)
                      .++...|+++|...++|   +++.+.++|....++|+||.+|+.|||+|+.+++|.|+. +.+|.+-|+|++|+|+.+|+
T Consensus        15 q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs   94 (354)
T KOG0025|consen   15 QMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGS   94 (354)
T ss_pred             ccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecC
Confidence            34567899999999988   888999999988888999999999999999999999986 78899999999999999999


Q ss_pred             CCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCce
Q 016660           88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (385)
Q Consensus        88 ~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~  167 (385)
                      ++++|++||+|+...                                                .+.|+|++|.+.+++.+
T Consensus        95 ~vkgfk~Gd~VIp~~------------------------------------------------a~lGtW~t~~v~~e~~L  126 (354)
T KOG0025|consen   95 NVKGFKPGDWVIPLS------------------------------------------------ANLGTWRTEAVFSESDL  126 (354)
T ss_pred             CcCccCCCCeEeecC------------------------------------------------CCCccceeeEeecccce
Confidence            999999999998542                                                22459999999999999


Q ss_pred             EECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH----HH
Q 016660          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE----IG  242 (385)
Q Consensus       168 ~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~----~~  242 (385)
                      +++++.++.+.||++.+..+|||..|.+.-++++||+|+-.|+ +++|++.+|+||++|++.|-++ ++...++    .+
T Consensus       127 i~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvV-RdR~~ieel~~~L  205 (354)
T KOG0025|consen  127 IKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVV-RDRPNIEELKKQL  205 (354)
T ss_pred             EEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEe-ecCccHHHHHHHH
Confidence            9999999999999999999999999988889999999999998 9999999999999999666666 5544444    45


Q ss_pred             HHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCc
Q 016660          243 KRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK  321 (385)
Q Consensus       243 ~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  321 (385)
                      +.+||++|+...+....+..+..... ++.+.|||+|+.. ..+..+.|.+| |.++.+|. ++..+.+++...+++|++
T Consensus       206 k~lGA~~ViTeeel~~~~~~k~~~~~~~prLalNcVGGks-a~~iar~L~~G-gtmvTYGG-MSkqPv~~~ts~lIFKdl  282 (354)
T KOG0025|consen  206 KSLGATEVITEEELRDRKMKKFKGDNPRPRLALNCVGGKS-ATEIARYLERG-GTMVTYGG-MSKQPVTVPTSLLIFKDL  282 (354)
T ss_pred             HHcCCceEecHHHhcchhhhhhhccCCCceEEEeccCchh-HHHHHHHHhcC-ceEEEecC-ccCCCcccccchheeccc
Confidence            57999999976663333322222334 7999999999999 77899999997 99999998 457788899999999999


Q ss_pred             EEEEeeecCCCCCC--------cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe--eEEEEEeC
Q 016660          322 ILMGSLFGGLKAKS--------DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC--LRCVIWMG  384 (385)
Q Consensus       322 ~i~g~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~--~k~vi~~~  384 (385)
                      .+.|+|+..|....        .+.++.++++.|++...  -....+|++...|++...+...  +|.+|.++
T Consensus       283 ~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~--~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~e  353 (354)
T KOG0025|consen  283 KLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAP--NCEKVPLADHKTALDAALSKFGKSGKQIIVLE  353 (354)
T ss_pred             eeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccc--cceeeechhhhHHHHHHHHHhccCCceEEEec
Confidence            99999998876422        35578888899977655  3457789999999886655433  47776654

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=2.6e-42  Score=328.44  Aligned_cols=336  Identities=27%  Similarity=0.377  Sum_probs=282.5

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC------------CCCCCccccCceeEEEEE
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF------------PAVFPRILGHEAIGVVES   84 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~------------~~~~p~~~G~e~~G~V~~   84 (385)
                      |||+++..++.++++.+.|.|++.++||+|||.++++|++|++.+.+.++            ...+|.++|||++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~   80 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA   80 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence            78999998888899999999999999999999999999999998877543            123467899999999999


Q ss_pred             eCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeecc
Q 016660           85 VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (385)
Q Consensus        85 vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~  164 (385)
                      +|++++++++||+|+..+...|+.|.+|.++.+++|....+   .|....                   |+|++|+.++.
T Consensus        81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~  138 (350)
T cd08240          81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIFQD-------------------GGYAEYVIVPH  138 (350)
T ss_pred             eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeeecc-------------------CcceeeEEecH
Confidence            99999999999999999999999999999999999965432   121122                   49999999999


Q ss_pred             CceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH
Q 016660          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (385)
Q Consensus       165 ~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  244 (385)
                      +.++++|+++++.+++++.+.+.|||+++.....+.++++|||+|+|++|++++|+|+..|+++|+++++++++.+.+++
T Consensus       139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  218 (350)
T cd08240         139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA  218 (350)
T ss_pred             HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            99999999999999999999999999987666666789999999889999999999999999788899889999999999


Q ss_pred             cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEE
Q 016660          245 FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  324 (385)
Q Consensus       245 lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  324 (385)
                      +|++.+++.++..+...+.++.++++|++||++|....+..++++++++ |+++.+|......  .++...+..++.++.
T Consensus       219 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~--~~~~~~~~~~~~~i~  295 (350)
T cd08240         219 AGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKG-GKLVLVGLFGGEA--TLPLPLLPLRALTIQ  295 (350)
T ss_pred             hCCcEEecCCCccHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcC-CeEEEECCCCCCC--cccHHHHhhcCcEEE
Confidence            9999888887755555566666558999999999877799999999997 9999998754322  233333445788888


Q ss_pred             EeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          325 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       325 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      +......   +++.+++++++++.+.+.  ..+.|++++++++++.+..++. +|++++
T Consensus       296 ~~~~~~~---~~~~~~~~ll~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  349 (350)
T cd08240         296 GSYVGSL---EELRELVALAKAGKLKPI--PLTERPLSDVNDALDDLKAGKVVGRAVLK  349 (350)
T ss_pred             EcccCCH---HHHHHHHHHHHcCCCccc--eeeEEcHHHHHHHHHHHHcCCccceEEec
Confidence            8754432   578889999999976643  5578999999999999987765 488875

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=2.7e-42  Score=333.31  Aligned_cols=339  Identities=18%  Similarity=0.203  Sum_probs=277.1

Q ss_pred             CCeeeeEEEecc--CCC---CcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC----------CCCCccccCc
Q 016660           13 KPIQCRAAIATA--PGE---PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP----------AVFPRILGHE   77 (385)
Q Consensus        13 ~~~~~~a~~~~~--~~~---~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~----------~~~p~~~G~e   77 (385)
                      .|.+|+|+++..  ++.   .+++.+.|.|.++++||+|||.++++|++|++.+.+....          ...+.++|||
T Consensus         9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e   88 (393)
T cd08246           9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD   88 (393)
T ss_pred             CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence            567899998853  222   3788999999999999999999999999999887664110          1123588999


Q ss_pred             eeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeecccccccee
Q 016660           78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS  157 (385)
Q Consensus        78 ~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~  157 (385)
                      ++|+|+++|++++.|++||+|++.+...|+.|..|..+..++|....+   +|+..                  ..|+|+
T Consensus        89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~------------------~~g~~a  147 (393)
T cd08246          89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYET------------------NYGSFA  147 (393)
T ss_pred             eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccC------------------CCCcce
Confidence            999999999999999999999999999999999999999999975443   33321                  124999


Q ss_pred             eeEeeccCceEECCCCCCcccccccccchhhhhhhhhhh--ccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 016660          158 EYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (385)
Q Consensus       158 ~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~--~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~  234 (385)
                      +|+.++...++++|+++++++++.+++++.|||+++...  ++++++++|||+|+ |++|++++++|+.+|+ +++++++
T Consensus       148 ~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~  226 (393)
T cd08246         148 QFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVS  226 (393)
T ss_pred             eEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999999999999999999999999987654  67899999999997 9999999999999999 6777888


Q ss_pred             CchHHHHHHHcCCCeEEeCCCCC----------------------chhHHHHhhCC--CccEEEEccCChHHHHHHHHHh
Q 016660          235 ISEKFEIGKRFGVTEFVNSKNCG----------------------DKSIIIDMTDG--GADYCFECVGLASLVQEAYACC  290 (385)
Q Consensus       235 ~~~~~~~~~~lg~~~vv~~~~~~----------------------~~~~i~~~~~g--~~d~vid~~g~~~~~~~~~~~l  290 (385)
                      ++++.++++++|+++++++++.+                      +...+.+++++  ++|++||++|+.. +..+++++
T Consensus       227 s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~-~~~~~~~l  305 (393)
T cd08246         227 SEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRAT-FPTSVFVC  305 (393)
T ss_pred             CHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHh-HHHHHHHh
Confidence            99999999999999999875421                      12336667766  6999999999854 89999999


Q ss_pred             ccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHH
Q 016660          291 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL  370 (385)
Q Consensus       291 ~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~  370 (385)
                      +++ |+++.+|.... ....++...++.++.++.+++...   .+.+.+++++++++.+.+  .+++.|+++++++|++.
T Consensus       306 ~~~-G~~v~~g~~~~-~~~~~~~~~l~~~~~~i~g~~~~~---~~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~a~~~  378 (393)
T cd08246         306 DRG-GMVVICAGTTG-YNHTYDNRYLWMRQKRIQGSHFAN---DREAAEANRLVMKGRIDP--CLSKVFSLDETPDAHQL  378 (393)
T ss_pred             ccC-CEEEEEcccCC-CCCCCcHHHHhhheeEEEecccCc---HHHHHHHHHHHHcCCcee--eeeEEEeHHHHHHHHHH
Confidence            997 99999987532 224455566667788888875433   257888999999996653  46789999999999999


Q ss_pred             HhcC-Ce-eEEEE
Q 016660          371 LIKG-KC-LRCVI  381 (385)
Q Consensus       371 l~~~-~~-~k~vi  381 (385)
                      +.++ .. +|+++
T Consensus       379 ~~~~~~~~gkvvv  391 (393)
T cd08246         379 MHRNQHHVGNMAV  391 (393)
T ss_pred             HHhCccccceEEE
Confidence            9877 44 58776

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=5e-42  Score=325.36  Aligned_cols=337  Identities=23%  Similarity=0.371  Sum_probs=277.2

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCC---CCCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~---~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      ||++++.++++.+++.+.|.|.|.++||+||++++++|++|+.++.+..   ....+|.++|||++|+|+++|+++++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~   80 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK   80 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence            5899999888779999999999999999999999999999999766532   1234677899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|+..+..+|+.|.+|+.+.+++|....+   .+...+|                   +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~iP~~  138 (341)
T PRK05396         81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVNRPG-------------------AFAEYLVIPAFNVWKIPDD  138 (341)
T ss_pred             CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeecCCC-------------------cceeeEEechHHeEECcCC
Confidence            99999999999999999999999999975432   2222333                   9999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++.+++.+ ..+.++++++..  ...++++|+|.|+|++|++++|+|+++|+++|+++++++++.++++++|+++++++
T Consensus       139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~  215 (341)
T PRK05396        139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNV  215 (341)
T ss_pred             CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecC
Confidence            999888755 455666655432  34689999999889999999999999999668888888999999999999999988


Q ss_pred             CCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      ++......+.+++++ ++|++|||.|+...++.++++++++ |+++.+|....  ..+++...+..+++++.++....  
T Consensus       216 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~l~~~~~~~--  290 (341)
T PRK05396        216 AKEDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPPG--DMAIDWNKVIFKGLTIKGIYGRE--  290 (341)
T ss_pred             ccccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC--CCcccHHHHhhcceEEEEEEccC--
Confidence            875565657777766 8999999999888899999999997 99999987542  23344566677888888764221  


Q ss_pred             CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEeC
Q 016660          333 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  384 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~~  384 (385)
                      ..+.+..++++++++ +.+.+++.+.++++++++|++.+.++..+|++++.+
T Consensus       291 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~a~~~~~~~~~gk~vv~~~  341 (341)
T PRK05396        291 MFETWYKMSALLQSG-LDLSPIITHRFPIDDFQKGFEAMRSGQSGKVILDWD  341 (341)
T ss_pred             ccchHHHHHHHHHcC-CChhHheEEEEeHHHHHHHHHHHhcCCCceEEEecC
Confidence            124566788888888 545556779999999999999988776569998753

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=6e-42  Score=325.34  Aligned_cols=336  Identities=27%  Similarity=0.411  Sum_probs=281.3

Q ss_pred             eeEEEeccCCCCcEEEEeecCCC-CCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||+++.+++. +++.+.|.|.| .++||+||+.++++|++|+..+.|.++. ..|.++|||++|+|+++|++++++++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (345)
T cd08287           1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG   78 (345)
T ss_pred             CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence            68999998876 99999999996 8999999999999999999988877543 347899999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC--ceEECCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~--~~~~iP~~  173 (385)
                      |+|+..+..+|+.|.+|..+..++|....+   +|...+|                   +|++|+.++.+  .++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~~  136 (345)
T cd08287          79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAFVDG-------------------GQGEYVRVPLADGTLVKVPGS  136 (345)
T ss_pred             CEEEeccccCCCCChhhhCcCcccCCCCCc---ccCCCCC-------------------ceEEEEEcchhhCceEECCCC
Confidence            999886778899999999999999986443   3444444                   99999999875  99999999


Q ss_pred             CCccccc-----ccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC
Q 016660          174 VPPNRAC-----LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (385)
Q Consensus       174 l~~~~aa-----~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~  248 (385)
                      +++..+.     ++.+.+.|||+++ ...++.++++|+|.|+|++|++++|+|+++|++.++++++++++.++++++|++
T Consensus       137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~  215 (345)
T cd08287         137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGAT  215 (345)
T ss_pred             CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence            9882221     2235678899876 467899999999998899999999999999996789998888899999999999


Q ss_pred             eEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEee
Q 016660          249 EFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  327 (385)
Q Consensus       249 ~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  327 (385)
                      .++++++......+.+++++ ++|+++|++|+...+..++++++++ |+++.+|....  ...++....+.+++++.+..
T Consensus       216 ~v~~~~~~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~  292 (345)
T cd08287         216 DIVAERGEEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVPHG--GVELDVRELFFRNVGLAGGP  292 (345)
T ss_pred             eEecCCcccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccC-CEEEEecccCC--CCccCHHHHHhcceEEEEec
Confidence            99999875555557777776 8999999999887799999999997 99999987542  34455545567899998753


Q ss_pred             ecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          328 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      ..   ..+.+.+++++++++.+.+.+++++.+++++++++++.+.+++..|++|++
T Consensus       293 ~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~~~~~  345 (345)
T cd08287         293 AP---VRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAIKVLLRP  345 (345)
T ss_pred             CC---cHHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCceEEEeCC
Confidence            22   235788999999999887766677899999999999998887777999863

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=8.7e-42  Score=320.74  Aligned_cols=317  Identities=23%  Similarity=0.364  Sum_probs=268.5

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++.+++. ++++++|.|++.++||+|||.++++|++|+....|.++   +|.++|||++|+|+++|++   +++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~   73 (319)
T cd08242           1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK   73 (319)
T ss_pred             CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence            58999998764 99999999999999999999999999999998887653   5778999999999999998   78999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      ||...+..+|+.|.+|..+.++.|.....   .+. ..+|                   +|++|++++.++++++|++++
T Consensus        74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~  131 (319)
T cd08242          74 RVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG-------------------AFAEYLTLPLENLHVVPDLVP  131 (319)
T ss_pred             eEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC-------------------ceEEEEEechHHeEECcCCCC
Confidence            99999999999999999999999976553   232 1233                   999999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~  255 (385)
                      .++++.+ ..+.++|. +.+..+++++++|||+|+|.+|++++|+|+.+|+ +|++++.++++.++++++|++.++++++
T Consensus       132 ~~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~  208 (319)
T cd08242         132 DEQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPDEA  208 (319)
T ss_pred             HHHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCccc
Confidence            9888864 34556665 5577889999999999999999999999999999 6899988999999999999998887754


Q ss_pred             CCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCC
Q 016660          256 CGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAK  334 (385)
Q Consensus       256 ~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~  334 (385)
                      .         +.+ ++|++||++|+...+..++++++++ |+++..+...  ....++...+..++.++.++...     
T Consensus       209 ~---------~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~-----  271 (319)
T cd08242         209 E---------SEGGGFDVVVEATGSPSGLELALRLVRPR-GTVVLKSTYA--GPASFDLTKAVVNEITLVGSRCG-----  271 (319)
T ss_pred             c---------ccCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccC--CCCccCHHHheecceEEEEEecc-----
Confidence            1         233 7999999999877789999999997 9999877543  23455666667788888887532     


Q ss_pred             CcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          335 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       335 ~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                       .+.+++++++++.+++.+++++.|+++++++||+.+.++..+|++|++
T Consensus       272 -~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~vi~~  319 (319)
T cd08242         272 -PFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPGALKVLLRP  319 (319)
T ss_pred             -cHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCCceEEEeCC
Confidence             378899999999887777788999999999999999877667998863

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=1.4e-41  Score=326.25  Aligned_cols=344  Identities=24%  Similarity=0.329  Sum_probs=279.2

Q ss_pred             eeEEEeccCCCCcEEEEeecCCC-CCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      ||++++.+++. ++++++|+|.+ .++||+|||.++++|++|++...|.+. ..+|.++|||++|+|+++|++++.|++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G   78 (375)
T cd08282           1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG   78 (375)
T ss_pred             CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence            58999998875 99999999996 799999999999999999999888765 3458899999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCC---CCCCCCCCCcccccccCCceeeccccccceeeeEeeccC--ceEEC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFK---ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKV  170 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~---~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~--~~~~i  170 (385)
                      |+|+..+..+|+.|..|++++.++|......   +.+|+..     .          ....|+|++|+.++.+  .++++
T Consensus        79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~~g~~a~y~~v~~~~~~~~~l  143 (375)
T cd08282          79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVD-----M----------GPYGGGQAEYLRVPYADFNLLKL  143 (375)
T ss_pred             CEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccc-----c----------CCCCCeeeeEEEeecccCcEEEC
Confidence            9999999999999999999999999754321   0011100     0          0012499999999975  89999


Q ss_pred             CCCCCcc---cccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC
Q 016660          171 DPTVPPN---RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (385)
Q Consensus       171 P~~l~~~---~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~  247 (385)
                      |++++++   .++.+.+.+.|||+++ ..+++.++++|||.|+|++|++++|+|+++|+++|+++++++++.++++++|+
T Consensus       144 P~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~  222 (375)
T cd08282         144 PDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA  222 (375)
T ss_pred             CCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence            9999998   5677888999999987 77889999999999889999999999999998678889999999999999998


Q ss_pred             CeEEeCCCCCchhHHHHhhCCCccEEEEccCChH-----------HHHHHHHHhccCCceEEEeccCCCC----------
Q 016660          248 TEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS-----------LVQEAYACCRKGWGKTIVLGVDQPG----------  306 (385)
Q Consensus       248 ~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~-----------~~~~~~~~l~~~~G~~v~~g~~~~~----------  306 (385)
                       ..+++++......+.+++++++|++|||+|+..           ++..++++++++ |+++.+|.....          
T Consensus       223 -~~v~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~g~~~~~~~~~~~~~~~  300 (375)
T cd08282         223 -IPIDFSDGDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPG-GGIGIVGVYVAEDPGAGDAAAK  300 (375)
T ss_pred             -eEeccCcccHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcC-cEEEEEeccCCccccccccccc
Confidence             456776644555566666667999999999763           488999999997 999988764311          


Q ss_pred             -CcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          307 -SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       307 -~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                       ....++...++.++..+.+...   ...+.+..++++++++.+.+.+++++.|++++++++++.+.++...|+|+++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~kvvv~~  375 (375)
T cd08282         301 QGELSFDFGLLWAKGLSFGTGQA---PVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRLETKVVIKP  375 (375)
T ss_pred             CccccccHHHHHhcCcEEEEecC---CchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCCceEEEeCC
Confidence             1133455566667777766532   1235788899999999888766688999999999999999888755998753

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=4.1e-42  Score=323.69  Aligned_cols=310  Identities=18%  Similarity=0.190  Sum_probs=255.3

Q ss_pred             eeEEEeccCCCC-----cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCC
Q 016660           17 CRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        17 ~~a~~~~~~~~~-----l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      |||+++.+++.|     +++.++|.|.|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            689999988853     778899999999999999999999999999998887643 45688999999999999999999


Q ss_pred             C-CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEE
Q 016660           91 G-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (385)
Q Consensus        91 ~-~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~  169 (385)
                      + |++||+|+..+.                             .+                   |+|+||+.++++.+++
T Consensus        81 ~~~~vGd~V~~~~~-----------------------------~~-------------------g~~a~~~~v~~~~~~~  112 (324)
T cd08291          81 AQSLIGKRVAFLAG-----------------------------SY-------------------GTYAEYAVADAQQCLP  112 (324)
T ss_pred             ccCCCCCEEEecCC-----------------------------CC-------------------CcchheeeecHHHeEE
Confidence            6 999999974310                             01                   3899999999999999


Q ss_pred             CCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEE-c-CCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC
Q 016660          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-G-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (385)
Q Consensus       170 iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~-G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~  247 (385)
                      +|+++++++++++++.+.|||. +...... ++++++|+ | +|++|++++|+|+.+|+ +|+++++++++.++++++|+
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~  189 (324)
T cd08291         113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGA  189 (324)
T ss_pred             CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence            9999999999988888999975 4455555 55566665 4 59999999999999999 79999899999999999999


Q ss_pred             CeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEe
Q 016660          248 TEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  326 (385)
Q Consensus       248 ~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  326 (385)
                      ++++++++.++...+++++.+ ++|++||++|+.. ....+++++++ |+++.+|.........++...++.+++++.++
T Consensus       190 ~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  267 (324)
T cd08291         190 EYVLNSSDPDFLEDLKELIAKLNATIFFDAVGGGL-TGQILLAMPYG-STLYVYGYLSGKLDEPIDPVDLIFKNKSIEGF  267 (324)
T ss_pred             cEEEECCCccHHHHHHHHhCCCCCcEEEECCCcHH-HHHHHHhhCCC-CEEEEEEecCCCCcccCCHHHHhhcCcEEEEE
Confidence            999998876666667888877 8999999999877 67789999997 99999986532222235556677789999998


Q ss_pred             eecCCCC---CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          327 LFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       327 ~~~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      ....+..   .+++.+++++++ +  .+++++++.|+|+++.+|++.+++++. +|++|.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~~  324 (324)
T cd08291         268 WLTTWLQKLGPEVVKKLKKLVK-T--ELKTTFASRYPLALTLEAIAFYSKNMSTGKKLLI  324 (324)
T ss_pred             EHHHhhcccCHHHHHHHHHHHh-C--ccccceeeEEcHHHHHHHHHHHHhCCCCCeEEeC
Confidence            7654321   245777888887 6  455678899999999999999988665 698873

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=2e-41  Score=321.53  Aligned_cols=339  Identities=26%  Similarity=0.395  Sum_probs=280.5

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCC-CCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~-~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||+++.+++ .+++.++|+|.|. ++||+|||.++++|+.|+....+.+. ..+|.++|+|++|+|+++|++++.+++|
T Consensus         1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (344)
T cd08284           1 MKAVVFKGPG-DVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG   78 (344)
T ss_pred             CeeEEEecCC-CceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence            6799998875 4999999999985 99999999999999999998887664 3447789999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC--ceEECCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~--~~~~iP~~  173 (385)
                      |+|+..+..+|+.|.+|+.+..++|.....   .|..  +             .....|+|++|+.++.+  .++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~-------------~~~~~g~~~~~~~v~~~~~~~~~~p~~  140 (344)
T cd08284          79 DRVVSPFTIACGECFYCRRGQSGRCAKGGL---FGYA--G-------------SPNLDGAQAEYVRVPFADGTLLKLPDG  140 (344)
T ss_pred             CEEEEcccCCCCCChHHhCcCcccCCCCcc---cccc--c-------------cCCCCCceeEEEEcccccCceEECCCC
Confidence            999999999999999999999999975432   1110  0             00012499999999865  99999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++++++.+++++.|||+++. ..++.++++|||+|+|.+|++++++|+.+|+.+|+++++++++.++++++|+. +++.
T Consensus       141 l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~  218 (344)
T cd08284         141 LSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINF  218 (344)
T ss_pred             CCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEec
Confidence            999999999999999999874 47889999999998899999999999999975788888888999999999975 4666


Q ss_pred             CCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      +...+...+.+++++ ++|++||++++...+..++++++++ |+++.+|.... ..........+.+++++.+..   ..
T Consensus       219 ~~~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~---~~  293 (344)
T cd08284         219 EDAEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPG-GVISSVGVHTA-EEFPFPGLDAYNKNLTLRFGR---CP  293 (344)
T ss_pred             CCcCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEECcCCC-CCccccHHHHhhcCcEEEEec---CC
Confidence            654455557777776 8999999999877799999999997 99999997542 233444555667888887552   12


Q ss_pred             CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEE
Q 016660          333 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  382 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~  382 (385)
                      ..+.+.+++++++++.+.+.+++++.+++++++++++.+.+++.+|+|++
T Consensus       294 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~Vi~  343 (344)
T cd08284         294 VRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLD  343 (344)
T ss_pred             cchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCceEEEec
Confidence            34678999999999988776667789999999999998887666788875

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=2e-41  Score=321.48  Aligned_cols=337  Identities=28%  Similarity=0.418  Sum_probs=284.0

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++.+++. +.+.+.+.|++.+++|+|||.++++|+.|+.+..+.+.....|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd   79 (343)
T cd08235           1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD   79 (343)
T ss_pred             CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence            58999998875 99999999999999999999999999999998887664334577899999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCc-----eEECC
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-----VVKVD  171 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~-----~~~iP  171 (385)
                      +|+..++.+|+.|++|..++.++|....+   .|....                   |+|++|+.++.++     ++++|
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~~~~~~~~~~lP  137 (343)
T cd08235          80 RVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNLYD-------------------GGFAEYVRVPAWAVKRGGVLKLP  137 (343)
T ss_pred             EEEEccCCCCCCChHHHCcCcccCCCcce---eccCCC-------------------CcceeeEEecccccccccEEECC
Confidence            99999999999999999999999976543   233233                   3999999999998     99999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv  251 (385)
                      +++++.+|+++ +++.|||+++. ..+++++++|||+|+|.+|++++|+|+..|++.|+++.+++++.+.++++|+++++
T Consensus       138 ~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~  215 (343)
T cd08235         138 DNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTI  215 (343)
T ss_pred             CCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEe
Confidence            99999999876 68889999874 45899999999998899999999999999994488888899999999999999999


Q ss_pred             eCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecC
Q 016660          252 NSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  330 (385)
Q Consensus       252 ~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  330 (385)
                      ++++..+...+.+.+++ ++|++||++++...+..++++++++ |+++.+|.........++...+..+++.+.+.....
T Consensus       216 ~~~~~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  294 (343)
T cd08235         216 DAAEEDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVNIDPNLIHYREITITGSYAAS  294 (343)
T ss_pred             cCCccCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEeccCCCCCcccCHHHHhhCceEEEEEecCC
Confidence            98876665667777777 7999999999876689999999997 999999865433334455566667788887764322


Q ss_pred             CCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEE
Q 016660          331 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  382 (385)
Q Consensus       331 ~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~  382 (385)
                         .+.+.+++++++++.+.+.+.+...++++++.++++.+.+++.+|+|+.
T Consensus       295 ---~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  343 (343)
T cd08235         295 ---PEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGKSLKIVIT  343 (343)
T ss_pred             ---hhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCCcEEEEeC
Confidence               3578889999999987765556788999999999999988774488863

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=9.7e-42  Score=322.45  Aligned_cols=331  Identities=26%  Similarity=0.373  Sum_probs=278.1

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++.++++++++.+.|.|.+.++||+||++++++|+.|+....|.++...+|.++|||++|+|+++|++++.+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~   80 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD   80 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence            68999999998899999999999999999999999999999998888765556678999999999999999998899999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCc
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~  176 (385)
                      +|++.+..+|+.|.+|..+..++|.....   +|...+|                   +|++|+.++.+.++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~~  138 (334)
T PRK13771         81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEELDG-------------------FFAEYAKVKVTSLVKVPPNVSD  138 (334)
T ss_pred             EEEECCCCCCcCChhhcCCCcccCccccc---cccccCc-------------------eeeeeeecchhceEECCCCCCH
Confidence            99999888999999999999999976543   3333334                   9999999999999999999999


Q ss_pred             ccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC
Q 016660          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (385)
Q Consensus       177 ~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~  255 (385)
                      .+++.+++.+.+||+++... .+.++++|||+|+ |.+|++++++|+..|+ +|+++++++++.+.++++ ++++++++ 
T Consensus       139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~-  214 (334)
T PRK13771        139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVGS-  214 (334)
T ss_pred             HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCch-
Confidence            99999999999999987555 8899999999998 9999999999999999 788888899999999888 77777665 


Q ss_pred             CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCC
Q 016660          256 CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS  335 (385)
Q Consensus       256 ~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  335 (385)
                       .....++++  +++|++||++|+.. +..++++++++ |+++.+|.......+.......+.+++++.+...   ..++
T Consensus       215 -~~~~~v~~~--~~~d~~ld~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  286 (334)
T PRK13771        215 -KFSEEVKKI--GGADIVIETVGTPT-LEESLRSLNMG-GKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHIS---ATKR  286 (334)
T ss_pred             -hHHHHHHhc--CCCcEEEEcCChHH-HHHHHHHHhcC-CEEEEEeccCCCCCcccCHHHHHhcccEEEEecC---CCHH
Confidence             233335554  37999999999865 88999999997 9999999754322222334344567888887642   2246


Q ss_pred             cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          336 DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       336 ~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      ++.+++++++++.+.  +++++.|+++++++|++.+.+++. +|+++.+
T Consensus       287 ~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  333 (334)
T PRK13771        287 DVEEALKLVAEGKIK--PVIGAEVSLSEIDKALEELKDKSRIGKILVKP  333 (334)
T ss_pred             HHHHHHHHHHcCCCc--ceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence            788999999999665  347789999999999999987665 5988865

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3.5e-41  Score=319.09  Aligned_cols=334  Identities=29%  Similarity=0.503  Sum_probs=281.8

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||++++.++. +++.+.|.|.+.++||+|||.++++|+.|+....+.++...+|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (337)
T cd08261           1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD   79 (337)
T ss_pred             CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence            68999998875 99999999999999999999999999999999888765555688999999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCc
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~  176 (385)
                      +|+..+..+|+.|..|..+..++|.....   .+...                   .|+|++|+.++++ ++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------~g~~~~~v~v~~~-~~~~p~~~~~  136 (337)
T cd08261          80 RVVVDPYISCGECYACRKGRPNCCENLQV---LGVHR-------------------DGGFAEYIVVPAD-ALLVPEGLSL  136 (337)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCCCe---eeecC-------------------CCcceeEEEechh-eEECCCCCCH
Confidence            99998888999999999999999953221   12111                   2499999999999 9999999999


Q ss_pred             ccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCC
Q 016660          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (385)
Q Consensus       177 ~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~  256 (385)
                      ++++++ ..+.++++++ ...++.++++|||+|+|.+|++++|+|+.+|+ +|+++.+++++.++++++|+++++++++.
T Consensus       137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~~  213 (337)
T cd08261         137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGDE  213 (337)
T ss_pred             HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCccc
Confidence            999887 4777888866 77889999999999889999999999999999 78888889999999999999999998875


Q ss_pred             CchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCC
Q 016660          257 GDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS  335 (385)
Q Consensus       257 ~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  335 (385)
                      .....+.+++++ ++|++||++|+...+..++++++++ |+++.+|...  ....++...+..+++++.+..   ....+
T Consensus       214 ~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~i~~g~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~  287 (337)
T cd08261         214 DVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSK--GPVTFPDPEFHKKELTILGSR---NATRE  287 (337)
T ss_pred             CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEcCCC--CCCccCHHHHHhCCCEEEEec---cCChh
Confidence            555557777776 7999999999877789999999997 9999998653  234455556666788888763   22345


Q ss_pred             cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC-e-eEEEEEe
Q 016660          336 DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-C-LRCVIWM  383 (385)
Q Consensus       336 ~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~-~-~k~vi~~  383 (385)
                      .+.+++++++++.+.+.+.+...++++++.++++.+.+++ . +|+|+++
T Consensus       288 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~  337 (337)
T cd08261         288 DFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF  337 (337)
T ss_pred             hHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            7888999999998776434678999999999999998873 4 5999864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=3e-41  Score=322.79  Aligned_cols=335  Identities=27%  Similarity=0.446  Sum_probs=269.2

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC---CCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      +++.++.+++. +++.+.+.|.|.++||+|||.++++|++|++.+.+...   ...+|.++|||++|+|+++|+++++|+
T Consensus        18 ~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   96 (364)
T PLN02702         18 NMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLV   96 (364)
T ss_pred             cceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCC
Confidence            44455555655 89999999999999999999999999999998876321   123577899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|++.+..+|+.|..|+++..++|....+   ++...                  ..|+|++|+.++.+.++++|++
T Consensus        97 ~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~------------------~~g~~~~y~~v~~~~~~~~P~~  155 (364)
T PLN02702         97 VGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPP------------------VHGSLANQVVHPADLCFKLPEN  155 (364)
T ss_pred             CCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCC------------------CCCcccceEEcchHHeEECCCC
Confidence            99999999999999999999999999975332   11110                  1249999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++.++++.. ++.++|+++ ...++.++++|||+|+|++|++++++|+.+|++.|+++++++++.++++++|++.++++
T Consensus       156 l~~~~aa~~~-~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~  233 (364)
T PLN02702        156 VSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLV  233 (364)
T ss_pred             CCHHHHhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEec
Confidence            9999887632 444577766 67789999999999999999999999999999778889889999999999999988765


Q ss_pred             C--CCCchhHHHHh---hCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeee
Q 016660          254 K--NCGDKSIIIDM---TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  328 (385)
Q Consensus       254 ~--~~~~~~~i~~~---~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  328 (385)
                      .  +......+..+   ..+++|++||++|+...+..++++++++ |+++.+|....  ...+....+..+++++.+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~  310 (364)
T PLN02702        234 STNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHN--EMTVPLTPAAAREVDVVGVFR  310 (364)
T ss_pred             CcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC--CCcccHHHHHhCccEEEEecc
Confidence            3  22333334443   2337999999999877799999999997 99999996532  234455567778999988753


Q ss_pred             cCCCCCCcHHHHHHHHHcCCCCCCCceeeeeec--chHHHHHHHHhcCCe-eEEEEE
Q 016660          329 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKF--EEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l--~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      .    ...+..++++++++.+.+.+++++.|++  +++++|++.+.+++. +|++|.
T Consensus       311 ~----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~  363 (364)
T PLN02702        311 Y----RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN  363 (364)
T ss_pred             C----hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence            2    2578889999999988776667788665  799999999887765 599885

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.1e-41  Score=325.87  Aligned_cols=335  Identities=22%  Similarity=0.351  Sum_probs=273.5

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCC------C-CCCCCccccCceeEEEEEeCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD------F-PAVFPRILGHEAIGVVESVGENV   89 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~------~-~~~~p~~~G~e~~G~V~~vG~~v   89 (385)
                      +.+.++..+  ++++.+.|.|.+++++|+|||.++++|++|++.+.+..      + ...+|.++|||++|+|+++|+++
T Consensus        29 ~~~~~~~~~--~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v  106 (384)
T cd08265          29 LGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNV  106 (384)
T ss_pred             ceeEEEeCC--CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCC
Confidence            445555544  39999999999999999999999999999998876321      1 13457899999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEE
Q 016660           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (385)
Q Consensus        90 ~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~  169 (385)
                      +.|++||+|++.+..+|+.|++|.++.+++|.....   .|...+|                   +|++|+.++.+.+++
T Consensus       107 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~v~v~~~~~~~  164 (384)
T cd08265         107 KNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFSADG-------------------AFAEYIAVNARYAWE  164 (384)
T ss_pred             CCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeecCCC-------------------cceeeEEechHHeEE
Confidence            999999999999999999999999999999975432   3333333                   999999999999999


Q ss_pred             CCCCC-------Ccccccccccchhhhhhhhhhh-ccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHH
Q 016660          170 VDPTV-------PPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (385)
Q Consensus       170 iP~~l-------~~~~aa~l~~~~~ta~~al~~~-~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  241 (385)
                      +|+++       ++. +|++..++.|||+++... .+++++++|||+|+|++|++++++|+.+|+.+|+++++++++.++
T Consensus       165 lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~  243 (384)
T cd08265         165 INELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNL  243 (384)
T ss_pred             CCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence            99864       344 556666889999988665 689999999999889999999999999999779999888999999


Q ss_pred             HHHcCCCeEEeCCCC---CchhHHHHhhCC-CccEEEEccCCh-HHHHHHHHHhccCCceEEEeccCCCCCcccccHHHH
Q 016660          242 GKRFGVTEFVNSKNC---GDKSIIIDMTDG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV  316 (385)
Q Consensus       242 ~~~lg~~~vv~~~~~---~~~~~i~~~~~g-~~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~  316 (385)
                      ++++|+++++++++.   .+...+++++.+ ++|+|+|++|.. ..+..++++++++ |+++.+|....  ..++.+..+
T Consensus       244 ~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~  320 (384)
T cd08265         244 AKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN-GKIVYIGRAAT--TVPLHLEVL  320 (384)
T ss_pred             HHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcC-CEEEEECCCCC--CCcccHHHH
Confidence            999999999988753   344457788877 899999999974 4578999999997 99999986532  344455556


Q ss_pred             hhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEE
Q 016660          317 LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  381 (385)
Q Consensus       317 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi  381 (385)
                      ..+..++.+.+....  ...+.+++++++++.+.+.+++++.|+++++++|++.+.++..+|+++
T Consensus       321 ~~~~~~l~~~~~~~~--~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~kvvv  383 (384)
T cd08265         321 QVRRAQIVGAQGHSG--HGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKITI  383 (384)
T ss_pred             hhCceEEEEeeccCC--cchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEe
Confidence            666778887753222  346899999999998877666778999999999999977766568775

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=5.1e-41  Score=318.74  Aligned_cols=332  Identities=30%  Similarity=0.485  Sum_probs=274.8

Q ss_pred             EEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCC-C--CCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           19 AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-F--PAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        19 a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~--~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |+++.++.. +++.+.|.|.|.++||+|||.++++|+.|++.+.+.. .  ...+|.++|+|++|+|+++|+++++|++|
T Consensus         1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (343)
T cd05285           1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG   79 (343)
T ss_pred             CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence            467788865 9999999999999999999999999999998764221 1  12357789999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      |+|++.+..+|+.|++|+.+.+++|.+..+.  ......                   |+|++|++++++.++++|++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------g~~~~~~~v~~~~~~~lP~~~~  138 (343)
T cd05285          80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA--ATPPVD-------------------GTLCRYVNHPADFCHKLPDNVS  138 (343)
T ss_pred             CEEEEccccCCCCChhHhCcCcccCcCcccc--ccccCC-------------------CceeeeEEecHHHcEECcCCCC
Confidence            9999999999999999999999999753220  000112                   3999999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~  255 (385)
                      +++|+.+ .++.+||+++ +..+++++++|||.|+|++|++++|+|+.+|+++|+++.+++++.++++++|+++++++++
T Consensus       139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~  216 (343)
T cd05285         139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT  216 (343)
T ss_pred             HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc
Confidence            9999877 4788999875 7889999999999988999999999999999955899988999999999999999998887


Q ss_pred             CCc---hhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          256 CGD---KSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       256 ~~~---~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      ...   ...+.+.+.+ ++|++|||+|+...++.++++++++ |+++.+|....  ...+++..+..+++.+.++...  
T Consensus       217 ~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~--  291 (343)
T cd05285         217 EDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKP--EVTLPLSAASLREIDIRGVFRY--  291 (343)
T ss_pred             ccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC--CCccCHHHHhhCCcEEEEeccC--
Confidence            543   4446677776 7999999999876689999999997 99999986432  2344555566678888876422  


Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC--eeEEEE
Q 016660          332 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVI  381 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~--~~k~vi  381 (385)
                        .+.+.+++++++++.+.+.+++.+.++++++.+|++.+.+++  .+|++|
T Consensus       292 --~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~  341 (343)
T cd05285         292 --ANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI  341 (343)
T ss_pred             --hHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence              267888999999998765555778999999999999998875  379987

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=4.8e-41  Score=317.98  Aligned_cols=334  Identities=30%  Similarity=0.456  Sum_probs=285.4

Q ss_pred             eeEEEeccCCCC-cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC-CCCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           17 CRAAIATAPGEP-LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        17 ~~a~~~~~~~~~-l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      ||++++..++.+ +.+.+.|.|.+.+++|+|||.++++|+.|+....+.+. ...+|.++|+|++|+|+++|++++.|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~   80 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV   80 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence            689999999987 68888899999999999999999999999998888765 2345778999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      ||+|+.++..+|+.|.+|+.++.+.|.....   .|...+|                   +|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~  138 (338)
T cd08254          81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLGIDG-------------------GFAEYIVVPARALVPVPDGV  138 (338)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccccCC-------------------cceeeEEechHHeEECCCCC
Confidence            9999999999999999999999999965443   3444444                   99999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      ++.+++.++.++.|||+++.....++++++|||.|+|.+|++++++|+..|+ +|+++++++++.+.++++|++++++..
T Consensus       139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~  217 (338)
T cd08254         139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSL  217 (338)
T ss_pred             CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCC
Confidence            9999999999999999988777889999999999889999999999999999 799999999999999999999988877


Q ss_pred             CCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          255 NCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       255 ~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      +......+ ..+.+ ++|+++|++|....+..++++++++ |+++.+|...  ....++...++.++.++.+++..   .
T Consensus       218 ~~~~~~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~---~  290 (338)
T cd08254         218 DDSPKDKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGR--DKLTVDLSDLIARELRIIGSFGG---T  290 (338)
T ss_pred             CcCHHHHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcC-CEEEEECCCC--CCCccCHHHHhhCccEEEEeccC---C
Confidence            64444435 45555 8999999999887799999999997 9999998653  23345556677788888886422   2


Q ss_pred             CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          334 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      .+.+..++++++++.+.+.   .+.++++++.++++.+.+++. +|+++++
T Consensus       291 ~~~~~~~~~ll~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  338 (338)
T cd08254         291 PEDLPEVLDLIAKGKLDPQ---VETRPLDEIPEVLERLHKGKVKGRVVLVP  338 (338)
T ss_pred             HHHHHHHHHHHHcCCCccc---ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            4678889999999977754   478999999999999988775 4988864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=6.3e-41  Score=317.40  Aligned_cols=333  Identities=26%  Similarity=0.374  Sum_probs=276.3

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++.+++....+++.|.|++.++||+|||.++++|++|++.+.+.++. ..|.++|||++|+|+++|+++++|++||
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD   79 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence            789999998874448999999999999999999999999999988776543 2367899999999999999999999999


Q ss_pred             EEEecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        97 rV~~~~-~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      +|++.+ ..+|+.|.+|..+..++|.....   .|+..+|                   +|++|+.++.+.++++|++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~  137 (338)
T PRK09422         80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYTVDG-------------------GMAEQCIVTADYAVKVPEGLD  137 (338)
T ss_pred             EEEEccCCCCCCCChhhcCCCcccCCCccc---cCccccC-------------------cceeEEEEchHHeEeCCCCCC
Confidence            998755 56799999999999999975542   3444444                   999999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      +.+++.+++.+.|||+++ ..++++++++|||+|+|++|++++++|+. .|+ +|+++++++++.+.++++|++.+++++
T Consensus       138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~  215 (338)
T PRK09422        138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSK  215 (338)
T ss_pred             HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEeccc
Confidence            999999999999999987 77889999999999999999999999998 599 899999999999999999999999876


Q ss_pred             C-CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          255 N-CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       255 ~-~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      + ......+++.++ ++|+++++.++...+..++++++.+ |+++.+|...  ...+++...+..++..+.++.+..   
T Consensus       216 ~~~~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~---  288 (338)
T PRK09422        216 RVEDVAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGLPP--ESMDLSIPRLVLDGIEVVGSLVGT---  288 (338)
T ss_pred             ccccHHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCC-CEEEEEeeCC--CCceecHHHHhhcCcEEEEecCCC---
Confidence            4 233344565555 6896665666667799999999997 9999998653  234455556666788887764322   


Q ss_pred             CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          334 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                      .+++..++++++++.+.+  .+ ..++++++++|++.+.++.. +|+++...
T Consensus       289 ~~~~~~~~~l~~~g~l~~--~v-~~~~~~~~~~a~~~~~~~~~~gkvvv~~~  337 (338)
T PRK09422        289 RQDLEEAFQFGAEGKVVP--KV-QLRPLEDINDIFDEMEQGKIQGRMVIDFT  337 (338)
T ss_pred             HHHHHHHHHHHHhCCCCc--cE-EEEcHHHHHHHHHHHHcCCccceEEEecC
Confidence            357888999999997653  35 46899999999999988776 49998764

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=2.8e-42  Score=317.91  Aligned_cols=270  Identities=20%  Similarity=0.325  Sum_probs=226.2

Q ss_pred             cccCceeEEEEEeCCCCC------CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCce
Q 016660           73 ILGHEAIGVVESVGENVD------GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET  146 (385)
Q Consensus        73 ~~G~e~~G~V~~vG~~v~------~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~  146 (385)
                      ++|||++|+|+++|++|+      +|++||||++.+..+|+.|.+|+.+++++|....+   +|....+           
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~-----------   66 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALD-----------   66 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCccccc-----------
Confidence            589999999999999999      89999999999999999999999999999987554   2222100           


Q ss_pred             eeccccccceeeeEeeccC-ceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcC
Q 016660          147 IHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG  225 (385)
Q Consensus       147 ~~~~~~~g~~~~~v~v~~~-~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G  225 (385)
                       ......|+|+||+.++++ .++++|+++++++++.+++.+.|+|+++ +.....++++|||+|+|++|++++|+||.+|
T Consensus        67 -~~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G  144 (280)
T TIGR03366        67 -SGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG  144 (280)
T ss_pred             -CCccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence             000112499999999987 7999999999999999999999999976 4455679999999999999999999999999


Q ss_pred             CCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCC
Q 016660          226 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       226 ~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      +++|++++++++|.++++++|++.++++++  ....+.+++.+ ++|++||++|.+..++.++++++++ |+++.+|...
T Consensus       145 ~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~--~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~  221 (280)
T TIGR03366       145 AARVVAADPSPDRRELALSFGATALAEPEV--LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAGSVF  221 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHcCCcEecCchh--hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEeccCC
Confidence            966999988999999999999999988765  33446667766 8999999999988899999999997 9999999754


Q ss_pred             CCCcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHc--CCCCCCCceeeeeecchH
Q 016660          305 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD--KELELDKFVTHEMKFEEI  364 (385)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~i~~~~~l~~~  364 (385)
                      .....+++...++.|++++.|+....   .++++++++++.+  +++++++++++.|+|+++
T Consensus       222 ~~~~~~i~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       222 PGGPVALDPEQVVRRWLTIRGVHNYE---PRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             CCCceeeCHHHHHhCCcEEEecCCCC---HHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            33446777888889999999985322   3679999999997  467777889999999874

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=4e-41  Score=318.62  Aligned_cols=335  Identities=22%  Similarity=0.356  Sum_probs=277.9

Q ss_pred             eEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCCE
Q 016660           18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDV   97 (385)
Q Consensus        18 ~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gdr   97 (385)
                      |+++.+.++..+++.+++.|+|.++||+|||.++++|++|++.+.+.+....+|.++|||++|+|+++|+++++|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~   80 (337)
T cd05283           1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR   80 (337)
T ss_pred             CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence            57888888877999999999999999999999999999999998887655566889999999999999999999999999


Q ss_pred             EE-ecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCc
Q 016660           98 VI-PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (385)
Q Consensus        98 V~-~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~  176 (385)
                      |+ ......|+.|.+|.++..++|....+. +.|....+              ....|+|+||+.++.+.++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------------~~~~g~~~~~~~v~~~~~~~lp~~~~~  145 (337)
T cd05283          81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVT-YNGKYPDG--------------TITQGGYADHIVVDERFVFKIPEGLDS  145 (337)
T ss_pred             EEEecCCCCCCCCccccCCchhcCcchhhc-ccccccCC--------------CcCCCcceeEEEechhheEECCCCCCH
Confidence            97 444568999999999999999765431 01111101              122349999999999999999999999


Q ss_pred             ccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCC
Q 016660          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (385)
Q Consensus       177 ~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~  256 (385)
                      ++++.+.+.+.|||+++ +...++++++|+|.|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++.+++.++.
T Consensus       146 ~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~~  223 (337)
T cd05283         146 AAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKDP  223 (337)
T ss_pred             HHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCcch
Confidence            99999999999999976 44568999999998889999999999999999 89999888999999999999999887652


Q ss_pred             CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCCc
Q 016660          257 GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSD  336 (385)
Q Consensus       257 ~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  336 (385)
                      ..   ... ..+++|++|||+|....+..++++++++ |+++.+|....  ...+++..++.+++++.+.....   .++
T Consensus       224 ~~---~~~-~~~~~d~v~~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~~---~~~  293 (337)
T cd05283         224 EA---MKK-AAGSLDLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEE--PLPVPPFPLIFGRKSVAGSLIGG---RKE  293 (337)
T ss_pred             hh---hhh-ccCCceEEEECCCCcchHHHHHHHhcCC-CEEEEEeccCC--CCccCHHHHhcCceEEEEecccC---HHH
Confidence            22   111 2347999999999886689999999997 99999997532  23556666677899999986543   367


Q ss_pred             HHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          337 IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       337 ~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      +.+++++++++++++  .+ +.|+++++++||+.+.+++. +|+|++
T Consensus       294 ~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~  337 (337)
T cd05283         294 TQEMLDFAAEHGIKP--WV-EVIPMDGINEALERLEKGDVRYRFVLD  337 (337)
T ss_pred             HHHHHHHHHhCCCcc--ce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence            889999999997654  34 78999999999999998876 598874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=5.7e-41  Score=324.35  Aligned_cols=342  Identities=21%  Similarity=0.230  Sum_probs=276.9

Q ss_pred             CCeeeeEEEecc--CCC---CcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC----------CCCCC-ccccC
Q 016660           13 KPIQCRAAIATA--PGE---PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF----------PAVFP-RILGH   76 (385)
Q Consensus        13 ~~~~~~a~~~~~--~~~---~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~----------~~~~p-~~~G~   76 (385)
                      .+.+|||+++..  ++.   .+++.+.|.|.|.+++|+||+.++++|++|++...+...          ....| .++||
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            356799999965  443   388999999999999999999999999999876655321          00123 37999


Q ss_pred             ceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccce
Q 016660           77 EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF  156 (385)
Q Consensus        77 e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~  156 (385)
                      |++|+|+++|++++.|++||+|++.+...|+.|++|+.+.+++|.....   +|..                  ...|+|
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~------------------~~~g~~  142 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYE------------------TNFGSF  142 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---cccc------------------CCCccc
Confidence            9999999999999999999999999999999999999999999954321   2211                  112499


Q ss_pred             eeeEeeccCceEECCCCCCcccccccccchhhhhhhhhh--hccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc
Q 016660          157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (385)
Q Consensus       157 ~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~--~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~  233 (385)
                      ++|+.++.+.++++|+++++++++.+.+++.|||+++..  ..++.++++|+|+|+ |++|++++++|+.+|+ ++++++
T Consensus       143 ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~  221 (398)
T TIGR01751       143 AEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVV  221 (398)
T ss_pred             eEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEc
Confidence            999999999999999999999999999999999998754  467899999999997 9999999999999999 677777


Q ss_pred             CCchHHHHHHHcCCCeEEeCCCCC----------------------chhHHHHhhCC-CccEEEEccCChHHHHHHHHHh
Q 016660          234 VISEKFEIGKRFGVTEFVNSKNCG----------------------DKSIIIDMTDG-GADYCFECVGLASLVQEAYACC  290 (385)
Q Consensus       234 ~~~~~~~~~~~lg~~~vv~~~~~~----------------------~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l  290 (385)
                      +++++.+.++++|++.++|+++.+                      +...+.+++++ ++|++|||+|... +..+++++
T Consensus       222 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~-~~~~~~~l  300 (398)
T TIGR01751       222 SSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRAT-FPTSVFVC  300 (398)
T ss_pred             CCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHH-HHHHHHhh
Confidence            889999999999999999876521                      11225566766 8999999999754 88999999


Q ss_pred             ccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHH
Q 016660          291 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL  370 (385)
Q Consensus       291 ~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~  370 (385)
                      +++ |+++.+|... .....++...++.++.++.++.....   .++.+++++++++.+.+  .+++.+++++++++++.
T Consensus       301 ~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~--~~~~~~~l~~~~~a~~~  373 (398)
T TIGR01751       301 RRG-GMVVICGGTT-GYNHDYDNRYLWMRQKRIQGSHFANL---REAWEANRLVAKGRIDP--TLSKVYPLEEIGQAHQD  373 (398)
T ss_pred             ccC-CEEEEEcccc-CCCCCcCHHHHhhcccEEEccccCcH---HHHHHHHHHHHCCCccc--ceeeEEcHHHHHHHHHH
Confidence            997 9999999754 22245555566667888887754332   45788999999997664  37789999999999999


Q ss_pred             HhcCCe-eEEEEEeC
Q 016660          371 LIKGKC-LRCVIWMG  384 (385)
Q Consensus       371 l~~~~~-~k~vi~~~  384 (385)
                      +.+++. +|+|+++.
T Consensus       374 ~~~~~~~gkvvv~~~  388 (398)
T TIGR01751       374 VHRNHHQGNVAVLVL  388 (398)
T ss_pred             HHcCCCCceEEEEeC
Confidence            987775 49998763

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.6e-40  Score=313.64  Aligned_cols=324  Identities=22%  Similarity=0.324  Sum_probs=263.7

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC-----------CCCCCccccCceeEEEEEe
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-----------PAVFPRILGHEAIGVVESV   85 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~-----------~~~~p~~~G~e~~G~V~~v   85 (385)
                      |||+++.++  ++++.+.|.|++.+++|+|||.++++|+.|+....|...           ...+|.++|+|++|+|+++
T Consensus         1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v   78 (341)
T cd08262           1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY   78 (341)
T ss_pred             CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence            689999876  599999999999999999999999999999998877321           2235788999999999999


Q ss_pred             CCCCCC-CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeecc
Q 016660           86 GENVDG-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (385)
Q Consensus        86 G~~v~~-~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~  164 (385)
                      |+++++ |++||+|+..+...|+.|+.|..+..             ...                   .|+|++|+.++.
T Consensus        79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~-------------~~~-------------------~g~~~~~~~v~~  126 (341)
T cd08262          79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLS-------------PEA-------------------PGGYAEYMLLSE  126 (341)
T ss_pred             CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCC-------------cCC-------------------CCceeeeEEech
Confidence            999997 99999999999999999999932211             011                   239999999999


Q ss_pred             CceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH
Q 016660          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (385)
Q Consensus       165 ~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  244 (385)
                      +.++++|+++++++++ +++++.+||++ ....+++++++|||+|+|++|++++|+|+.+|++.++++++++++.+++++
T Consensus       127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~  204 (341)
T cd08262         127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA  204 (341)
T ss_pred             HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            9999999999999877 56688899987 477889999999999889999999999999999778888888999999999


Q ss_pred             cCCCeEEeCCCCCchh---HHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcC
Q 016660          245 FGVTEFVNSKNCGDKS---IIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSG  320 (385)
Q Consensus       245 lg~~~vv~~~~~~~~~---~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  320 (385)
                      +|+++++++++.....   .+...+.+ ++|++||++|+...+..++++++++ |+++.+|......  .+.....+.++
T Consensus       205 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~--~~~~~~~~~~~  281 (341)
T cd08262         205 MGADIVVDPAADSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGVCMESD--NIEPALAIRKE  281 (341)
T ss_pred             cCCcEEEcCCCcCHHHHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCC--ccCHHHHhhcc
Confidence            9999999887642211   23444555 8999999999865688999999997 9999998753222  22322334567


Q ss_pred             cEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          321 KILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       321 ~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      +++.+...  . ..+.+.+++++++++.+.+.+++++.|++++++++++.+.+++. +|+|++
T Consensus       282 ~~~~~~~~--~-~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~  341 (341)
T cd08262         282 LTLQFSLG--Y-TPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD  341 (341)
T ss_pred             eEEEEEec--c-cHHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            77775532  1 23478889999999988877677899999999999999988765 488874

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=100.00  E-value=3.7e-40  Score=312.83  Aligned_cols=337  Identities=26%  Similarity=0.456  Sum_probs=280.2

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++++++. +.+.+.|.|++.++||+||+.++++|+.|+....+.+. ...|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~-~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd   78 (343)
T cd08236           1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA-YHPPLVLGHEFSGTVEEVGSGVDDLAVGD   78 (343)
T ss_pred             CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC-CCCCcccCcceEEEEEEECCCCCcCCCCC
Confidence            68999999876 99999999999999999999999999999998877652 24577899999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCc
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~  176 (385)
                      +|...+...|+.|++|..+....|.....   +|....                   |+|++|+.++.+.++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lP~~~~~  136 (343)
T cd08236          79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSRRD-------------------GAFAEYVSVPARNLIKIPDHVDY  136 (343)
T ss_pred             EEEEcCCCCCCCChhHHCcChhhCCCcce---EecccC-------------------CcccceEEechHHeEECcCCCCH
Confidence            99999988999999999999999976442   332233                   39999999999999999999999


Q ss_pred             ccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCC
Q 016660          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (385)
Q Consensus       177 ~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~  256 (385)
                      ++++++ ..+.|||+++. ...+.++++|||+|+|.+|++++|+|+.+|+++|+++++++++.++++++|++.++++++.
T Consensus       137 ~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~  214 (343)
T cd08236         137 EEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEE  214 (343)
T ss_pred             HHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccc
Confidence            999888 57889999874 7789999999999889999999999999999559999888899999999999999998875


Q ss_pred             CchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcc-cccHHHHhhcCcEEEEeeecCCC--
Q 016660          257 GDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL-SLSSFEVLHSGKILMGSLFGGLK--  332 (385)
Q Consensus       257 ~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~i~g~~~~~~~--  332 (385)
                      . ...+....++ ++|++|||+|....+..++++++++ |+++.+|.......+ ..+...++.++.++.++......  
T Consensus       215 ~-~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (343)
T cd08236         215 D-VEKVRELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPF  292 (343)
T ss_pred             c-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeecccccc
Confidence            5 5557777776 7999999999877789999999997 999999865422112 22344556778999888653321  


Q ss_pred             CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhc-CCe-eEEEE
Q 016660          333 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK-GKC-LRCVI  381 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~-~~~-~k~vi  381 (385)
                      ..+.+.+++++++++.+.+.+++.+.+++++++++++.+.+ +.. +|+|+
T Consensus       293 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  343 (343)
T cd08236         293 PGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL  343 (343)
T ss_pred             chhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence            13567888999999987654556789999999999999987 444 47764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=100.00  E-value=4.1e-40  Score=311.32  Aligned_cols=332  Identities=28%  Similarity=0.495  Sum_probs=279.1

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++.+++. +++.+.|.|++.++||+|||.++++|+.|+....|.++. .+|.++|+|++|+|+++|+++++|++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd   78 (334)
T cd08234           1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD   78 (334)
T ss_pred             CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence            68999998885 999999999999999999999999999999988887643 3678999999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCc
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~  176 (385)
                      +|+..+...|+.|.+|..++.++|.....   .|....|                   +|++|+.++.+.++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~~  136 (334)
T cd08234          79 RVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVTRNG-------------------GFAEYVVVPAKQVYKIPDNLSF  136 (334)
T ss_pred             EEEEcCCcCCCCCccccCcChhhCCCcce---eccCCCC-------------------cceeEEEecHHHcEECcCCCCH
Confidence            99999999999999999999998875432   2222233                   9999999999999999999999


Q ss_pred             ccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCC
Q 016660          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (385)
Q Consensus       177 ~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~  256 (385)
                      .+++.+ +.+.++++++ ..+++.++++|||+|+|.+|++++++|+..|+++|+++++++++.+.++++|++.++++++.
T Consensus       137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~  214 (334)
T cd08234         137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSRE  214 (334)
T ss_pred             HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCC
Confidence            998876 6788899877 77899999999999889999999999999999558888889999999999999888887764


Q ss_pred             CchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCC
Q 016660          257 GDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS  335 (385)
Q Consensus       257 ~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  335 (385)
                      .....  +.+.+ ++|++||++|....+..++++++++ |+++.+|........++....++.+++++.+....    .+
T Consensus       215 ~~~~~--~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  287 (334)
T cd08234         215 DPEAQ--KEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPFEIFQKELTIIGSFIN----PY  287 (334)
T ss_pred             CHHHH--HHhcCCCCcEEEECCCChHHHHHHHHHHhcC-CEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccC----HH
Confidence            33332  44444 8999999999877789999999997 99999987543334555555556678888887532    25


Q ss_pred             cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEE
Q 016660          336 DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  381 (385)
Q Consensus       336 ~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi  381 (385)
                      .+.+++++++++.+.+.+++++.+++++++++++.+.+...+|+++
T Consensus       288 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi  333 (334)
T cd08234         288 TFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRSGGALKVVV  333 (334)
T ss_pred             HHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhcCCceEEEe
Confidence            6888999999998877666778999999999999998833458876

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05281 TDH Threonine dehydrogenase

Probab=100.00  E-value=3.2e-40  Score=312.98  Aligned_cols=336  Identities=26%  Similarity=0.417  Sum_probs=273.8

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCC---CCCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~---~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++..++..+++.+.|.|.|.++||+|||.++++|+.|+.++.+..   ....+|.++|||++|+|+.+|++++.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   80 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK   80 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence            6899999888669999999999999999999999999999988754421   1223567899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|+..+..+|+.|++|..+.+++|....+   .|....                   |+|++|++++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~~~~~lP~~  138 (341)
T cd05281          81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKI---LGVDTD-------------------GCFAEYVVVPEENLWKNDKD  138 (341)
T ss_pred             CCCEEEECCccCCCCChHHHCcCcccCcccce---EeccCC-------------------CcceEEEEechHHcEECcCC
Confidence            99999999989999999999999999964322   222222                   48999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      ++++.+ ++..++.++++++.  ....++++|||.|+|.+|++++|+|+.+|+++|++++++++|.++++++|+++++++
T Consensus       139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~  215 (341)
T cd05281         139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINP  215 (341)
T ss_pred             CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCc
Confidence            998544 55567788887654  355789999999889999999999999998668888888899999999999999988


Q ss_pred             CCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHH-HHhhcCcEEEEeeecCC
Q 016660          254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF-EVLHSGKILMGSLFGGL  331 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~i~g~~~~~~  331 (385)
                      ++.+.. .+.+++++ ++|++||++|+...+..++++++++ |+++.+|....  ...+++. .+..+++.+.+..... 
T Consensus       216 ~~~~~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-  290 (341)
T cd05281         216 REEDVV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPPG--PVDIDLNNLVIFKGLTVQGITGRK-  290 (341)
T ss_pred             ccccHH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCCC--CcccccchhhhccceEEEEEecCC-
Confidence            765565 67777776 8999999999887789999999997 99999986542  2222222 2555678887764222 


Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          332 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                       ..+.+.+++++++++.+.+.+++.+.+++++++++|+.+.+++.+|+++++
T Consensus       291 -~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~gk~vv~~  341 (341)
T cd05281         291 -MFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGKCGKVVLYP  341 (341)
T ss_pred             -cchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCCCceEEecC
Confidence             235678899999999887766677889999999999999887745998863

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-40  Score=314.52  Aligned_cols=316  Identities=18%  Similarity=0.202  Sum_probs=249.8

Q ss_pred             CCeeeeEEEeccCC-C-C----cEEEEe---ecCC-CCCCeEEEEEeeeecccccccccccCCCCCCCCccccC--ceeE
Q 016660           13 KPIQCRAAIATAPG-E-P----LVIDEV---IVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH--EAIG   80 (385)
Q Consensus        13 ~~~~~~a~~~~~~~-~-~----l~~~~~---~~p~-~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~--e~~G   80 (385)
                      ..++.|.|++...- + |    +++.+.   +.|. +++|||||||.|+++|+.|...+.+.......|.++|+  |++|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~G   84 (348)
T PLN03154          5 QVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGFG   84 (348)
T ss_pred             ccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEeeE
Confidence            34557888874422 1 1    777763   5653 47999999999999999988654432222235789998  8899


Q ss_pred             EEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeE
Q 016660           81 VVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYT  160 (385)
Q Consensus        81 ~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v  160 (385)
                      +|+.+|+++++|++||+|...                                                    |+|+||+
T Consensus        85 ~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~aey~  112 (348)
T PLN03154         85 VSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEEYS  112 (348)
T ss_pred             EEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEEEE
Confidence            999999999999999999521                                                    2799999


Q ss_pred             eeccCc--eEE--CCCCCCcc-cccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 016660          161 VLDIAH--VVK--VDPTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (385)
Q Consensus       161 ~v~~~~--~~~--iP~~l~~~-~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~  234 (385)
                      .++.+.  +++  +|++++++ +||++++++.|||+++.+..+++++++|||+|+ |++|++++|+||.+|+ +|+++++
T Consensus       113 ~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~  191 (348)
T PLN03154        113 LIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAG  191 (348)
T ss_pred             EEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcC
Confidence            998753  544  59999986 688999999999999878888999999999998 9999999999999999 7999988


Q ss_pred             CchHHHHHH-HcCCCeEEeCCCC-CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCC-cc--
Q 016660          235 ISEKFEIGK-RFGVTEFVNSKNC-GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS-QL--  309 (385)
Q Consensus       235 ~~~~~~~~~-~lg~~~vv~~~~~-~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~-~~--  309 (385)
                      ++++.++++ ++|+++++++++. +....+++.+++++|++||++|+. .+..++++++++ |+++.+|...... ..  
T Consensus       192 ~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~  269 (348)
T PLN03154        192 SSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVGGD-MLDAALLNMKIH-GRIAVCGMVSLNSLSASQ  269 (348)
T ss_pred             CHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCCHH-HHHHHHHHhccC-CEEEEECccccCCCCCCC
Confidence            999999987 7999999998753 444446666655899999999976 489999999997 9999999753221 00  


Q ss_pred             -cccHHHHhhcCcEEEEeeecCCC--CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          310 -SLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       310 -~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                       .++...++.+++++.|++...+.  ..+.+.++++++++|++.+  .++..|+|+++++|++.+++++. +|+||++.+
T Consensus       270 ~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~--~~~~~~~L~~~~~A~~~l~~g~~~GKvVl~~~~  347 (348)
T PLN03154        270 GIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVY--IEDMSEGLESAPAALVGLFSGKNVGKQVIRVAK  347 (348)
T ss_pred             CcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccC--ceecccCHHHHHHHHHHHHcCCCCceEEEEecC
Confidence             12455677889999998644321  1245778999999997765  36678999999999999998876 599998753

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=7.4e-40  Score=310.49  Aligned_cols=335  Identities=28%  Similarity=0.439  Sum_probs=283.6

Q ss_pred             eeEEEeccCC-CCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        17 ~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      |||+++.+++ ..+++.+++.|.|.+++|+|||.++++|+.|+....+.++. ...|.++|||++|+|+++|++++.|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~   80 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV   80 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence            6899999887 34999999999999999999999999999999988776542 334668899999999999999999999


Q ss_pred             CCEEEecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           95 GDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        95 GdrV~~~~-~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      ||+|+..+ ..+|+.|.+|..+..++|....+   .|+...|                   +|++|+.++.+.++++|++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~s~~~~~~~~~~~lp~~  138 (341)
T cd08297          81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYTVDG-------------------TFAEYAIADARYVTPIPDG  138 (341)
T ss_pred             CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccccCC-------------------cceeEEEeccccEEECCCC
Confidence            99998776 67799999999999999976544   3333334                   8999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +++.+++.++..+.|||+++.. .+++++++|||+|+ +.+|++++++|+++|+ +|+++.+++++.+.++++|++.+++
T Consensus       139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~  216 (341)
T cd08297         139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVD  216 (341)
T ss_pred             CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEc
Confidence            9999999999999999998755 58999999999997 7799999999999999 8999989999999999999999999


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      +++.++...+.+++++ ++|+++|+.++...+..++++++.+ |+++.+|... ....+++...++.+++++.+..... 
T Consensus       217 ~~~~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-  293 (341)
T cd08297         217 FKKSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPP-GGFIPLDPFDLVLRGITIVGSLVGT-  293 (341)
T ss_pred             CCCccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcC-CEEEEecCCC-CCCCCCCHHHHHhcccEEEEeccCC-
Confidence            8875555557777766 8999999888777799999999997 9999998653 2334566666678899998864332 


Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          332 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                        .+.++.++++++++.+.+  .+ ..|+++++.++++.+..+.. +|+++++
T Consensus       294 --~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~  341 (341)
T cd08297         294 --RQDLQEALEFAARGKVKP--HI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF  341 (341)
T ss_pred             --HHHHHHHHHHHHcCCCcc--ee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence              367888999999997754  34 67999999999999987765 4999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=7.5e-40  Score=308.94  Aligned_cols=330  Identities=31%  Similarity=0.474  Sum_probs=274.4

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++..+++++.+.+.|.|.+.+++|+|||.++++|+.|++...|.++....|.++|||++|+|+++|+++++|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd   80 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD   80 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence            68999987666699999999999999999999999999999999888765555678999999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCc
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~  176 (385)
                      +|+..+...|+.|.+|+.+..++|....   .+|....|                   +|++|+.++.+.++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~~  138 (332)
T cd08259          81 RVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEEVDG-------------------GFAEYVKVPERSLVKLPDNVSD  138 (332)
T ss_pred             EEEECCCCCCcCChhhhCCCcccCCCcc---ccccccCC-------------------eeeeEEEechhheEECCCCCCH
Confidence            9999999999999999999999997642   24433334                   9999999999999999999999


Q ss_pred             ccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC
Q 016660          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (385)
Q Consensus       177 ~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~  255 (385)
                      ++++.+++++.|||+++.. ..+.+++++||+|+ |.+|++++++|+..|+ .|+++.+++++.+.++++|++.+++.++
T Consensus       139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (332)
T cd08259         139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGSK  216 (332)
T ss_pred             HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecHH
Confidence            9999999999999998766 88999999999997 9999999999999999 7888888888999999999988886654


Q ss_pred             CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCC
Q 016660          256 CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS  335 (385)
Q Consensus       256 ~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  335 (385)
                        ....+.+..  ++|+++|++|... ...++++++++ |+++.+|..... ...+.......++..+.+...   ...+
T Consensus       217 --~~~~~~~~~--~~d~v~~~~g~~~-~~~~~~~~~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~  286 (332)
T cd08259         217 --FSEDVKKLG--GADVVIELVGSPT-IEESLRSLNKG-GRLVLIGNVTPD-PAPLRPGLLILKEIRIIGSIS---ATKA  286 (332)
T ss_pred             --HHHHHHhcc--CCCEEEECCChHH-HHHHHHHhhcC-CEEEEEcCCCCC-CcCCCHHHHHhCCcEEEEecC---CCHH
Confidence              333344433  7999999999877 88999999997 999999875322 122233333456777776631   2235


Q ss_pred             cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          336 DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       336 ~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      ++.+++++++++.+.  +++++.++++++.+||+.+.+++. +|++++
T Consensus       287 ~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  332 (332)
T cd08259         287 DVEEALKLVKEGKIK--PVIDRVVSLEDINEALEDLKSGKVVGRIVLK  332 (332)
T ss_pred             HHHHHHHHHHcCCCc--cceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence            788899999999665  347789999999999999988775 488763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=100.00  E-value=7.7e-40  Score=310.13  Aligned_cols=332  Identities=25%  Similarity=0.389  Sum_probs=268.5

Q ss_pred             EeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccc-cCCCC--CCCCccccCceeEEEEEeCCCCCCCCCCCE
Q 016660           21 IATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFP--AVFPRILGHEAIGVVESVGENVDGVVEGDV   97 (385)
Q Consensus        21 ~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~-g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~~~~Gdr   97 (385)
                      ++++++. +++++.|.|.+.++||+|||.++++|++|+...+ +.+..  ..+|.++|+|++|+|+++|+++++|++||+
T Consensus         2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~   80 (339)
T cd08232           2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR   80 (339)
T ss_pred             eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence            5677766 9999999999999999999999999999998764 32211  235778999999999999999999999999


Q ss_pred             EEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCcc
Q 016660           98 VIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPN  177 (385)
Q Consensus        98 V~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~  177 (385)
                      |++.+..+|+.|.+|..|..++|....+   ++....              .....|+|++|+.++.+.++++|++++++
T Consensus        81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~--------------~~~~~g~~~~~v~v~~~~~~~iP~~~~~~  143 (339)
T cd08232          81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMR--------------FPHVQGGFREYLVVDASQCVPLPDGLSLR  143 (339)
T ss_pred             EEEccCCcCCCChHHhCcCcccCccccc---eeeccc--------------cCCCCCceeeEEEechHHeEECcCCCCHH
Confidence            9999999999999999999999986432   111000              00012499999999999999999999999


Q ss_pred             cccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCC
Q 016660          178 RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  257 (385)
Q Consensus       178 ~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~  257 (385)
                      +|+. ..+++|||+++.....+ ++++|||.|+|.+|++++|+|+.+|+++|+++++++++.++++++|+++++++++..
T Consensus       144 ~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~  221 (339)
T cd08232         144 RAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDP  221 (339)
T ss_pred             Hhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchh
Confidence            9876 46888999887655555 899999998899999999999999987789998889999999999999999887633


Q ss_pred             chhHHHHhhC-C-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCC
Q 016660          258 DKSIIIDMTD-G-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS  335 (385)
Q Consensus       258 ~~~~i~~~~~-g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  335 (385)
                          +..+.. . ++|++||++|+...++.++++++++ |+++.+|...  .....++..++.+++++.+...    ..+
T Consensus       222 ----~~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~  290 (339)
T cd08232         222 ----LAAYAADKGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLG--GPVPLPLNALVAKELDLRGSFR----FDD  290 (339)
T ss_pred             ----hhhhhccCCCccEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC--CCccCcHHHHhhcceEEEEEec----CHH
Confidence                223332 2 6999999999876689999999997 9999998643  3344455555667888877642    235


Q ss_pred             cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          336 DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       336 ~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      .+.+++++++++.+.+.+.+.+.+++++++++++.+.+++. +|+|+++
T Consensus       291 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  339 (339)
T cd08232         291 EFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF  339 (339)
T ss_pred             HHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence            78889999999988777767789999999999999977664 5999864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=3.6e-40  Score=310.22  Aligned_cols=310  Identities=22%  Similarity=0.246  Sum_probs=260.7

Q ss_pred             eeEEEeccCCCC---cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC-CCCCCccccCceeEEEEEeCCCCCCC
Q 016660           17 CRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGV   92 (385)
Q Consensus        17 ~~a~~~~~~~~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (385)
                      |||+++.+++.|   +++.++|.|.+.++||+|||.++++|+.|+..+.|.++ ...+|.++|||++|+|+++|+++++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            689999888754   77899999999999999999999999999999888764 24568899999999999999999999


Q ss_pred             CCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCC
Q 016660           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (385)
Q Consensus        93 ~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~  172 (385)
                      ++||+|+..+                              ..                   |+|++|+.++++.++++|+
T Consensus        81 ~~Gd~V~~~~------------------------------~~-------------------g~~~~~~~~~~~~~~~ip~  111 (324)
T cd08292          81 QVGQRVAVAP------------------------------VH-------------------GTWAEYFVAPADGLVPLPD  111 (324)
T ss_pred             CCCCEEEecc------------------------------CC-------------------CcceeEEEEchHHeEECCC
Confidence            9999997431                              11                   3899999999999999999


Q ss_pred             CCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE
Q 016660          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv  251 (385)
                      ++++++++++++.+.|||+++ ...+++++++|||+|+ |.+|++++|+|+.+|+ +++++..++++.+.++++|+++++
T Consensus       112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~  189 (324)
T cd08292         112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVV  189 (324)
T ss_pred             CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEE
Confidence            999999999998999999876 5578999999999987 9999999999999999 788887888888888889999999


Q ss_pred             eCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecC
Q 016660          252 NSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  330 (385)
Q Consensus       252 ~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  330 (385)
                      ++++.+....+.+++++ ++|++||++|+.. ...++++++++ |+++.+|... .....+++..++.++.++.++....
T Consensus       190 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  266 (324)
T cd08292         190 STEQPGWQDKVREAAGGAPISVALDSVGGKL-AGELLSLLGEG-GTLVSFGSMS-GEPMQISSGDLIFKQATVRGFWGGR  266 (324)
T ss_pred             cCCCchHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHhhcCC-cEEEEEecCC-CCCCcCCHHHHhhCCCEEEEEEcHH
Confidence            88876666668888887 8999999999875 78999999997 9999998752 3345566666677899999886543


Q ss_pred             CC-------CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          331 LK-------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       331 ~~-------~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      +.       ..+.+.++++++++|.+.+.  +.+.|+++++.+|++.+.++.. +|++++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  324 (324)
T cd08292         267 WSQEMSVEYRKRMIAELLTLALKGQLLLP--VEAVFDLGDAAKAAAASMRPGRAGKVLLR  324 (324)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence            21       12357788999999977654  4688999999999999887654 488764

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2e-39  Score=306.77  Aligned_cols=336  Identities=22%  Similarity=0.306  Sum_probs=278.3

Q ss_pred             eeEEEeccCCC--CcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++..++.  .+++.+.+.|.+.+++|+||+.++++|++|++.+.|.... ..+|.++|||++|+|+++|+++++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK   80 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence            58999884433  2788888888889999999999999999999988876532 34578899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|++.+...|+.|.+|.++.+++|....+   .|....|                   +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~~~~~~~~~~~~p~~  138 (342)
T cd08266          81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEHVDG-------------------GYAEYVAVPARNLLPIPDN  138 (342)
T ss_pred             CCCEEEEccccccccchhhccccccccccccc---cccccCc-------------------ceeEEEEechHHceeCCCC
Confidence            99999999999999999999999999976443   3433334                   8999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +++.+++++++.+.+||+++.+...+.++++++|+|+ +.+|++++++++..|+ +|+++++++++.+.++.++.+.+++
T Consensus       139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~  217 (342)
T cd08266         139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVID  217 (342)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEe
Confidence            9999999999999999998878888999999999997 7999999999999999 7888888888999888888888887


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      ..+......+...+.+ ++|+++|++|... +..++++++++ |+++.+|.... ....++....+.+++++.+..... 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~d~~i~~~g~~~-~~~~~~~l~~~-G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-  293 (342)
T cd08266         218 YRKEDFVREVRELTGKRGVDVVVEHVGAAT-WEKSLKSLARG-GRLVTCGATTG-YEAPIDLRHVFWRQLSILGSTMGT-  293 (342)
T ss_pred             cCChHHHHHHHHHhCCCCCcEEEECCcHHH-HHHHHHHhhcC-CEEEEEecCCC-CCCCcCHHHHhhcceEEEEEecCC-
Confidence            7664444445666655 8999999999865 88999999997 99999986532 223445445567788888875332 


Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          332 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                        ...+.+++++++++.+.+  ++++.|++++++++++.+.++.. +|+++++
T Consensus       294 --~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  342 (342)
T cd08266         294 --KAELDEALRLVFRGKLKP--VIDSVFPLEEAAEAHRRLESREQFGKIVLTP  342 (342)
T ss_pred             --HHHHHHHHHHHHcCCccc--ceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence              357888899999996553  47789999999999999887665 4888763

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=100.00  E-value=2.2e-39  Score=307.20  Aligned_cols=331  Identities=26%  Similarity=0.439  Sum_probs=271.0

Q ss_pred             ccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCC---CCCCCCccccCceeEEEEEeCCCCCCCCCCCEEE
Q 016660           23 TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVI   99 (385)
Q Consensus        23 ~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~---~~~~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV~   99 (385)
                      .+|++++++.+.|.|.|+++||+|||.++++|+.|+..+.+..   ....+|.++|+|++|+|+++|+++++|++||+|+
T Consensus         5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   84 (340)
T TIGR00692         5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS   84 (340)
T ss_pred             ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence            4677789999999999999999999999999999998765431   1123567899999999999999999999999999


Q ss_pred             ecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCcccc
Q 016660          100 PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA  179 (385)
Q Consensus       100 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~a  179 (385)
                      ..+...|+.|..|..+..++|...++   +|....                   |+|++|++++++.++++|++++++.|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~a  142 (340)
T TIGR00692        85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVDTD-------------------GCFAEYAVVPAQNIWKNPKSIPPEYA  142 (340)
T ss_pred             ECCcCCCCCChhhhCcChhhCcCcce---EeecCC-------------------CcceeEEEeehHHcEECcCCCChHhh
Confidence            99999999999999999999987653   232223                   39999999999999999999998654


Q ss_pred             cccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCch
Q 016660          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK  259 (385)
Q Consensus       180 a~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~  259 (385)
                       +++.++.+|++++  .....++++|+|.|+|++|++++|+|+.+|++.|+++++++++.++++++|++.++++.+....
T Consensus       143 -~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~  219 (340)
T TIGR00692       143 -TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVV  219 (340)
T ss_pred             -hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHH
Confidence             5666888888875  3457789999998889999999999999999558888888889999999999989988775555


Q ss_pred             hHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHH-HHhhcCcEEEEeeecCCCCCCcH
Q 016660          260 SIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF-EVLHSGKILMGSLFGGLKAKSDI  337 (385)
Q Consensus       260 ~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~  337 (385)
                      ..+.+++++ ++|++||++|+...+..++++++++ |+++.+|....  ...++.. .++.+++.+.+...  ....+.+
T Consensus       220 ~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  294 (340)
T TIGR00692       220 KEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPG--KVTIDFTNKVIFKGLTIYGITG--RHMFETW  294 (340)
T ss_pred             HHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCC-CEEEEEccCCC--CcccchhhhhhhcceEEEEEec--CCchhhH
Confidence            556677766 8999999999877789999999997 99999987532  2233333 45567778776541  2223467


Q ss_pred             HHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          338 PILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       338 ~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      .+++++++++.+.+.+++.+.++++++.++++.+.++..+|+|+++
T Consensus       295 ~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~gkvvv~~  340 (340)
T TIGR00692       295 YTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVILSL  340 (340)
T ss_pred             HHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            8889999999887666678999999999999999877667998864

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.8e-39  Score=308.89  Aligned_cols=324  Identities=23%  Similarity=0.280  Sum_probs=261.0

Q ss_pred             eeEEEeccCCCC--cEEEE-eecCCCCCCeEEEEEeeeecccccccccccCCC--------------------CCCCCcc
Q 016660           17 CRAAIATAPGEP--LVIDE-VIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------------------PAVFPRI   73 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~-~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~--------------------~~~~p~~   73 (385)
                      |||+++.+++.+  +.+.+ .+.|.|.+++|+|||.++++|++|+....|.++                    ...+|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            688888877643  55554 477788999999999999999999998877542                    2346789


Q ss_pred             ccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccc
Q 016660           74 LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSV  153 (385)
Q Consensus        74 ~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~  153 (385)
                      +|||++|+|+++|+++++|++||+|++.+..+|+.|..|..     |.   .   +|...+|                  
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~~---~---~~~~~~g------------------  131 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----ID---Y---IGSERDG------------------  131 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----cc---c---cCCCCCc------------------
Confidence            99999999999999999999999999998888888876521     11   0   2222223                  


Q ss_pred             cceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE
Q 016660          154 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (385)
Q Consensus       154 g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~  232 (385)
                       +|++|+.++.+.++++|+++++.+++.+++++.|||+++ ...+++++++|||+|+ |++|++++++|+.+|+ +++++
T Consensus       132 -~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~  208 (350)
T cd08274         132 -GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV  208 (350)
T ss_pred             -cceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence             999999999999999999999999999999999999976 7778999999999998 9999999999999999 67777


Q ss_pred             cCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccc
Q 016660          233 DVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL  311 (385)
Q Consensus       233 ~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~  311 (385)
                      .+++ +.+.++++|++.+++..... ... ...+.+ ++|++||++|+.. +..++++++++ |+++.+|... .....+
T Consensus       209 ~~~~-~~~~~~~~g~~~~~~~~~~~-~~~-~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~-~~~~~~  282 (350)
T cd08274         209 AGAA-KEEAVRALGADTVILRDAPL-LAD-AKALGGEPVDVVADVVGGPL-FPDLLRLLRPG-GRYVTAGAIA-GPVVEL  282 (350)
T ss_pred             eCch-hhHHHHhcCCeEEEeCCCcc-HHH-HHhhCCCCCcEEEecCCHHH-HHHHHHHhccC-CEEEEecccC-CccccC
Confidence            6554 88888999998666654422 222 455555 8999999999865 89999999997 9999998642 222456


Q ss_pred             cHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          312 SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       312 ~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      +...++.+++++.++....   .+.+.++++++.++.+.+  ++++.++++++.++++.+..+.. +|+++++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~  350 (350)
T cd08274         283 DLRTLYLKDLTLFGSTLGT---REVFRRLVRYIEEGEIRP--VVAKTFPLSEIREAQAEFLEKRHVGKLVLVP  350 (350)
T ss_pred             CHHHhhhcceEEEEeecCC---HHHHHHHHHHHHCCCccc--ccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            6677778899999886432   357888999999997653  46788999999999999987665 4888753

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.6e-39  Score=306.06  Aligned_cols=318  Identities=25%  Similarity=0.342  Sum_probs=262.2

Q ss_pred             eeEEEeccCC-CCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      ||++++.+++ +.+++.+.+.|+++++||+||+.++++|++|+..+.+. ....+|.++|||++|+|+++|++++.|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (325)
T cd08264           1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KVKPMPHIPGAEFAGVVEEVGDHVKGVKKG   79 (325)
T ss_pred             CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CCCCCCeecccceeEEEEEECCCCCCCCCC
Confidence            6899998776 44888888888899999999999999999999887642 222357789999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      |+|++.+..+|+.|.+|+.++.++|....+   +|....|                   +|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~  137 (325)
T cd08264          80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVVSNG-------------------GYAEYIVVPEKNLFKIPDSIS  137 (325)
T ss_pred             CEEEECCCcCCCCChhhcCCCccccCccce---eeccCCC-------------------ceeeEEEcCHHHceeCCCCCC
Confidence            999999999999999999999999986543   3333333                   999999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      +++++.+++.+.|||+++.. .+++++++|+|+|+ |++|++++++|+.+|+ +|+++.    +.++++++|++++++++
T Consensus       138 ~~~~~~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~----~~~~~~~~g~~~~~~~~  211 (325)
T cd08264         138 DELAASLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVS----RKDWLKEFGADEVVDYD  211 (325)
T ss_pred             HHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEe----HHHHHHHhCCCeeecch
Confidence            99999999999999998754 88999999999997 9999999999999999 777775    23677889999998876


Q ss_pred             CCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCC
Q 016660          255 NCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAK  334 (385)
Q Consensus       255 ~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~  334 (385)
                      +  ....+.+++ +++|+++|++|+. .+..++++++++ |+++.+|... .....++...++.++.++.++..+.   +
T Consensus       212 ~--~~~~l~~~~-~~~d~vl~~~g~~-~~~~~~~~l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~  282 (325)
T cd08264         212 E--VEEKVKEIT-KMADVVINSLGSS-FWDLSLSVLGRG-GRLVTFGTLT-GGEVKLDLSDLYSKQISIIGSTGGT---R  282 (325)
T ss_pred             H--HHHHHHHHh-CCCCEEEECCCHH-HHHHHHHhhccC-CEEEEEecCC-CCCCccCHHHHhhcCcEEEEccCCC---H
Confidence            5  233356666 6899999999975 589999999997 9999998642 2335666667777788888875332   3


Q ss_pred             CcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe
Q 016660          335 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC  376 (385)
Q Consensus       335 ~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~  376 (385)
                      +.+.++++++...  .+  .+++.|+++++++|++.+.+++.
T Consensus       283 ~~~~~~~~l~~~~--~~--~~~~~~~~~~~~~a~~~~~~~~~  320 (325)
T cd08264         283 KELLELVKIAKDL--KV--KVWKTFKLEEAKEALKELFSKER  320 (325)
T ss_pred             HHHHHHHHHHHcC--Cc--eeEEEEcHHHHHHHHHHHHcCCC
Confidence            5788888888543  32  35688999999999999887654

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=1.6e-39  Score=307.83  Aligned_cols=313  Identities=19%  Similarity=0.189  Sum_probs=250.6

Q ss_pred             CeeeeEEEeccCCC-CcEEEEeec----CCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCce--eEEEEEe
Q 016660           14 PIQCRAAIATAPGE-PLVIDEVIV----DPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEA--IGVVESV   85 (385)
Q Consensus        14 ~~~~~a~~~~~~~~-~l~~~~~~~----p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~--~G~V~~v   85 (385)
                      ...+|++....|.. .+++.+.|+    |+|+++||||||.|++||+.|++...|.... ..+|.++|+++  .|.+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v   84 (338)
T cd08295           5 QVILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVV   84 (338)
T ss_pred             EEEEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEE
Confidence            34577888766664 388999988    7899999999999999999999988875432 34578899754  4566668


Q ss_pred             CCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeecc-
Q 016660           86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-  164 (385)
Q Consensus        86 G~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~-  164 (385)
                      |+++++|++||+|+..                                                    |+|+||+++++ 
T Consensus        85 ~~~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~  112 (338)
T cd08295          85 DSGNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRG  112 (338)
T ss_pred             ecCCCCCCCCCEEEec----------------------------------------------------CCceeEEEecch
Confidence            8999999999999521                                                    27999999999 


Q ss_pred             CceEECC-CCCCcc-cccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH
Q 016660          165 AHVVKVD-PTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (385)
Q Consensus       165 ~~~~~iP-~~l~~~-~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  241 (385)
                      +.++++| +++++. +++++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++
T Consensus       113 ~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~  191 (338)
T cd08295         113 QDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDL  191 (338)
T ss_pred             hceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            7999995 678887 789999999999998878889999999999997 9999999999999999 79998889999999


Q ss_pred             HHH-cCCCeEEeCCCC-CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCc----ccccHHH
Q 016660          242 GKR-FGVTEFVNSKNC-GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ----LSLSSFE  315 (385)
Q Consensus       242 ~~~-lg~~~vv~~~~~-~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~----~~~~~~~  315 (385)
                      +++ +|+++++++.+. +....+.+.+++++|++||++|+.. +..++++++++ |+++.+|.......    ...+...
T Consensus       192 ~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~  269 (338)
T cd08295         192 LKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGKM-LDAVLLNMNLH-GRIAACGMISQYNLEWPEGVRNLLN  269 (338)
T ss_pred             HHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCCHHH-HHHHHHHhccC-cEEEEecccccCCCCCCCCccCHHH
Confidence            998 999999997653 4444466665558999999999854 89999999997 99999986432111    1123455


Q ss_pred             HhhcCcEEEEeeecCCCC--CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          316 VLHSGKILMGSLFGGLKA--KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       316 ~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      ++.+++++.++....+..  .+.+.++++++++|.+++.  +...|+++++++|++.+++++. +|+|+++
T Consensus       270 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~  338 (338)
T cd08295         270 IIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYV--EDIADGLESAPEAFVGLFTGSNIGKQVVKV  338 (338)
T ss_pred             HhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEce--eecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence            667788888865443221  2346778899999977765  4456999999999999988775 5999864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=5.6e-39  Score=302.97  Aligned_cols=323  Identities=25%  Similarity=0.354  Sum_probs=269.0

Q ss_pred             eeEEEeccCCC----CcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCC
Q 016660           17 CRAAIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (385)
Q Consensus        17 ~~a~~~~~~~~----~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (385)
                      |||+++.+++.    ++++.+.+.|.+.++||+||+.++++|++|++...|.++...+|.++|||++|+|+++|+++.+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF   80 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence            68999998883    58888888888999999999999999999999988876555668899999999999999999999


Q ss_pred             CCCCEEEecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           93 VEGDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        93 ~~GdrV~~~~-~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      ++||+|++.+ ..+|+.|.+|..+.+++|....+   .|...+|                   +|++|+.++.+.++++|
T Consensus        81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp  138 (329)
T cd08298          81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYTVDG-------------------GYAEYMVADERFAYPIP  138 (329)
T ss_pred             cCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccccCC-------------------ceEEEEEecchhEEECC
Confidence            9999997654 46899999999999999986654   3433334                   89999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv  251 (385)
                      +++++.+++.+++.+.|||+++ ..++++++++|||+|+|++|++++++|+..|+ +|+++.+++++.+.++++|++.++
T Consensus       139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  216 (329)
T cd08298         139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAG  216 (329)
T ss_pred             CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEe
Confidence            9999999999999999999987 88899999999999999999999999999999 899998899999999999998888


Q ss_pred             eCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          252 NSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       252 ~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      +.++.         ...++|+++++.+....++.++++++++ |+++.+|... .....++... +.++..+.+....  
T Consensus       217 ~~~~~---------~~~~vD~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~-~~~~~~i~~~~~~--  282 (329)
T cd08298         217 DSDDL---------PPEPLDAAIIFAPVGALVPAALRAVKKG-GRVVLAGIHM-SDIPAFDYEL-LWGEKTIRSVANL--  282 (329)
T ss_pred             ccCcc---------CCCcccEEEEcCCcHHHHHHHHHHhhcC-CEEEEEcCCC-CCCCccchhh-hhCceEEEEecCC--
Confidence            77652         1237999999987777799999999997 9999988532 2222233332 3456677666422  


Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016660          332 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  381 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~-k~vi  381 (385)
                       ..+.+.+++++++++.+.+  . .+.|+++++++|++.+++++.. |+++
T Consensus       283 -~~~~~~~~~~l~~~~~l~~--~-~~~~~~~~~~~a~~~~~~~~~~~~~v~  329 (329)
T cd08298         283 -TRQDGEEFLKLAAEIPIKP--E-VETYPLEEANEALQDLKEGRIRGAAVL  329 (329)
T ss_pred             -CHHHHHHHHHHHHcCCCCc--e-EEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence             2356888899999997654  2 5889999999999999887654 7663

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=100.00  E-value=6.2e-39  Score=302.79  Aligned_cols=328  Identities=27%  Similarity=0.426  Sum_probs=272.6

Q ss_pred             eEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCCE
Q 016660           18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDV   97 (385)
Q Consensus        18 ~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gdr   97 (385)
                      ||+++.+++..+++.+.|.|.+.+++|+||+.++++|+.|+..+.+.+....+|.++|||++|+|+++|+++++|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~   80 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR   80 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence            68899998666999999999999999999999999999999988887654456889999999999999999999999999


Q ss_pred             EEecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCc
Q 016660           98 VIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (385)
Q Consensus        98 V~~~~~-~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~  176 (385)
                      |++.+. .+|+.|.+|.+++.++|.+..+   .+....|                   +|++|+.++.+.++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~~  138 (330)
T cd08245          81 VGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYTTQG-------------------GYAEYMVADAEYTVLLPDGLPL  138 (330)
T ss_pred             EEEccccCCCCCChhhhCcCcccCcCccc---cCcccCC-------------------ccccEEEEcHHHeEECCCCCCH
Confidence            988664 6799999999999999987554   2322233                   8999999999999999999999


Q ss_pred             ccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCC
Q 016660          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (385)
Q Consensus       177 ~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~  256 (385)
                      .+++.+++.+.|||.++.. ..+.++++|||+|+|.+|++++++|+..|+ +|+++++++++.+.++++|++.+++..+.
T Consensus       139 ~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~  216 (330)
T cd08245         139 AQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGAE  216 (330)
T ss_pred             HHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCCc
Confidence            9999999999999998744 789999999999988899999999999999 79999899999999999999888876552


Q ss_pred             CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCCc
Q 016660          257 GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSD  336 (385)
Q Consensus       257 ~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  336 (385)
                      ....   . ..+++|++||+++.......++++++.+ |+++.++.... .........++.++.++.++....   .+.
T Consensus       217 ~~~~---~-~~~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~  287 (330)
T cd08245         217 LDEQ---A-AAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPES-PPFSPDIFPLIMKRQSIAGSTHGG---RAD  287 (330)
T ss_pred             chHH---h-ccCCCCEEEECCCcHHHHHHHHHhcccC-CEEEEECCCCC-CccccchHHHHhCCCEEEEeccCC---HHH
Confidence            2221   2 2247999999998877789999999997 99999986432 222333455667788888876432   357


Q ss_pred             HHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016660          337 IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  381 (385)
Q Consensus       337 ~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~-k~vi  381 (385)
                      +..+++++.++.+.+   ..+.|++++++++|+.+.+++.. |+|+
T Consensus       288 ~~~~~~ll~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~  330 (330)
T cd08245         288 LQEALDFAAEGKVKP---MIETFPLDQANEAYERMEKGDVRFRFVL  330 (330)
T ss_pred             HHHHHHHHHcCCCcc---eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence            888899999997764   34789999999999999877654 7664

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=2.9e-38  Score=300.03  Aligned_cols=300  Identities=19%  Similarity=0.183  Sum_probs=230.9

Q ss_pred             cEEEEeecCCCC-CCeEEEEEeeeecccccccccc---cCCCCCCCCccccCceeEEEEEeCCCCCCCCCCCEEEecCCC
Q 016660           29 LVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLA  104 (385)
Q Consensus        29 l~~~~~~~p~~~-~~eVlVkv~a~~i~~~D~~~~~---g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~  104 (385)
                      +++.+.|.|+|. ++||||||.|+|||+.|.....   +......+|.++|||++|+|+++|+++++|++||||+...  
T Consensus        23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~--  100 (345)
T cd08293          23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN--  100 (345)
T ss_pred             eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence            888999999874 9999999999999998864332   1111234678999999999999999999999999996310  


Q ss_pred             CCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCccc----cc
Q 016660          105 DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR----AC  180 (385)
Q Consensus       105 ~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~----aa  180 (385)
                                                                       |+|+||++++++.++++|+++++.+    ++
T Consensus       101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a  131 (345)
T cd08293         101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG  131 (345)
T ss_pred             -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence                                                             1799999999999999999865443    45


Q ss_pred             ccccchhhhhhhhhhhccCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCC
Q 016660          181 LLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNC  256 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~~~~~--~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~  256 (385)
                      +++.++.|||+++.+.++++++  ++|||+|+ |++|++++|+|+++|+++|+++++++++.+++++ +|+++++++++.
T Consensus       132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~  211 (345)
T cd08293         132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTD  211 (345)
T ss_pred             hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCC
Confidence            6777899999988777788876  99999997 9999999999999998679999889999998876 999999998876


Q ss_pred             CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCC---Ccc--ccc--HHHH-hhcCcEEEEeee
Q 016660          257 GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG---SQL--SLS--SFEV-LHSGKILMGSLF  328 (385)
Q Consensus       257 ~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~---~~~--~~~--~~~~-~~~~~~i~g~~~  328 (385)
                      ++...+++++++++|++||++|+.. +..++++++++ |+++.+|.....   ...  .+.  ...+ ..+++++.+...
T Consensus       212 ~~~~~i~~~~~~gvd~vid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (345)
T cd08293         212 NVAERLRELCPEGVDVYFDNVGGEI-SDTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLV  289 (345)
T ss_pred             CHHHHHHHHCCCCceEEEECCCcHH-HHHHHHHhccC-CEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEe
Confidence            6666677776568999999999876 79999999997 999999853211   111  111  1111 223444433322


Q ss_pred             cCCC--CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          329 GGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       329 ~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      ....  ..+.+++++++++++.+.+.  ....++++++.+|++.+.+++. +|+|+++
T Consensus       290 ~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~  345 (345)
T cd08293         290 LNYKDKFEEAIAQLSQWVKEGKLKVK--ETVYEGLENAGEAFQSMMNGGNIGKQIVKV  345 (345)
T ss_pred             eccHhHHHHHHHHHHHHHHCCCccce--eEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence            1211  11336677889999987765  3455799999999999988775 5999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=4e-38  Score=294.03  Aligned_cols=301  Identities=27%  Similarity=0.431  Sum_probs=253.0

Q ss_pred             eeEEEeccCC-CCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||+++.+++ ..+++++++.|++.+++|+|||.++++|++|++...+.+.....|.++|+|++|+|+++|++++.|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   80 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG   80 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence            5788888755 349999999999999999999999999999999888765433457889999999999999999999999


Q ss_pred             CEEEecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        96 drV~~~~~-~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      |+|+..+. .+|+.|++|..+..+.|.....   +|....                   |+|++|+.++.+.++++|+++
T Consensus        81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~lp~~~  138 (306)
T cd08258          81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQAD-------------------GGFAEYVLVPEESLHELPENL  138 (306)
T ss_pred             CEEEEccCcCCCCCCcchhCcCcccCCCCce---eeecCC-------------------CceEEEEEcchHHeEECcCCC
Confidence            99998774 6799999999999999975432   232223                   399999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE--cCCchHHHHHHHcCCCeEEe
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV--DVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~--~~~~~~~~~~~~lg~~~vv~  252 (385)
                      ++++++ +...+.+||+++....+++++++|||.|+|.+|++++++|+.+|+ +|+++  .+++++.++++++|++++ +
T Consensus       139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~  215 (306)
T cd08258         139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-N  215 (306)
T ss_pred             CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-C
Confidence            999887 666888999998888889999999998889999999999999999 67766  334557888899999888 8


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      ++..++...+..++++ ++|++||++|+...+...+++++++ |+++.+|... .....++...++.+++++.|++++. 
T Consensus       216 ~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~i~g~~~~~-  292 (306)
T cd08258         216 GGEEDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVGIFG-PLAASIDVERIIQKELSVIGSRSST-  292 (306)
T ss_pred             CCcCCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccC-CCCcccCHHHHhhcCcEEEEEecCc-
Confidence            7765565557777766 8999999998877789999999997 9999999864 3346667777888999999998654 


Q ss_pred             CCCCcHHHHHHHHHcC
Q 016660          332 KAKSDIPILLKRYMDK  347 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g  347 (385)
                        +++++++++++++|
T Consensus       293 --~~~~~~~~~~~~~~  306 (306)
T cd08258         293 --PASWETALRLLASG  306 (306)
T ss_pred             --hHhHHHHHHHHhcC
Confidence              36799999998765

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=3.7e-38  Score=297.25  Aligned_cols=305  Identities=19%  Similarity=0.204  Sum_probs=243.5

Q ss_pred             eeeEEEeccC--CCC----cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCC
Q 016660           16 QCRAAIATAP--GEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (385)
Q Consensus        16 ~~~a~~~~~~--~~~----l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (385)
                      .||||++..+  +.+    +++.+.|.|+|++|||+|||.+++||+.|.+....   ...+|.++|+|++|+|++   .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~   75 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KN   75 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CC
Confidence            4889998883  332    88899999999999999999999999987653221   124588999999999995   44


Q ss_pred             CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC---c
Q 016660           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA---H  166 (385)
Q Consensus        90 ~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~---~  166 (385)
                      ++|++||||+..                                                    ++|++|+.++.+   .
T Consensus        76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~  103 (329)
T cd08294          76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD  103 (329)
T ss_pred             CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence            679999999621                                                    178999999999   9


Q ss_pred             eEECCCCCCc-----ccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH
Q 016660          167 VVKVDPTVPP-----NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (385)
Q Consensus       167 ~~~iP~~l~~-----~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  240 (385)
                      ++++|+++++     ..++++++++.|||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+
T Consensus       104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~  182 (329)
T cd08294         104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVA  182 (329)
T ss_pred             eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence            9999999982     2234678899999999888889999999999986 9999999999999999 7999989999999


Q ss_pred             HHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCC---c--ccccHHH
Q 016660          241 IGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS---Q--LSLSSFE  315 (385)
Q Consensus       241 ~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~---~--~~~~~~~  315 (385)
                      +++++|+++++++++.++...+++.+++++|++||++|+.. +..++++++++ |+++.+|......   .  .......
T Consensus       183 ~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~~~-~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~  260 (329)
T cd08294         183 WLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGGEF-SSTVLSHMNDF-GRVAVCGSISTYNDKEPKKGPYVQET  260 (329)
T ss_pred             HHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCHHH-HHHHHHhhccC-CEEEEEcchhccCCCCCCcCcccHHH
Confidence            99999999999998766666677766568999999999855 89999999997 9999998532111   1  1223345


Q ss_pred             HhhcCcEEEEeeecCCC--CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          316 VLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       316 ~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      ++.+++++.++....+.  ..+.++++++++++|.+.+.  ....++++++++|++.+.+++. +|+++++
T Consensus       261 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~  329 (329)
T cd08294         261 IIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYR--EHVTEGFENMPQAFIGMLKGENTGKAIVKV  329 (329)
T ss_pred             HhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCC--cccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            66678888887543321  12346678899999987765  3356899999999999988775 5999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=2.8e-38  Score=297.77  Aligned_cols=291  Identities=19%  Similarity=0.214  Sum_probs=234.5

Q ss_pred             cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCC
Q 016660           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTE  108 (385)
Q Consensus        29 l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~  108 (385)
                      +++.+.|.|.|++|||||||.|+++|+.|..   |.+.....|.++|.|++|+|+++|+   +|++||||+..       
T Consensus        19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~-------   85 (325)
T TIGR02825        19 FELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS-------   85 (325)
T ss_pred             eEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence            8889999999999999999999999997554   3333233478999999999999874   59999999631       


Q ss_pred             CccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC----CCCCCcccc-cccc
Q 016660          109 CVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV----DPTVPPNRA-CLLS  183 (385)
Q Consensus       109 ~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i----P~~l~~~~a-a~l~  183 (385)
                                                                   ++|++|+.++.+.+.++    |+++++++| ++++
T Consensus        86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~  120 (325)
T TIGR02825        86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG  120 (325)
T ss_pred             ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence                                                         16899999999988887    899999987 6789


Q ss_pred             cchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCC-CchhH
Q 016660          184 CGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC-GDKSI  261 (385)
Q Consensus       184 ~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~-~~~~~  261 (385)
                      +++.|||+++.+.++++++++|||+|+ |++|++++|+||..|+ +|+++++++++.++++++|+++++++++. .....
T Consensus       121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~  199 (325)
T TIGR02825       121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEET  199 (325)
T ss_pred             cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHH
Confidence            999999998888889999999999996 9999999999999999 79999889999999999999999998874 33333


Q ss_pred             HHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCC---Cccc--ccHHHHhhcCcEEEEeeecCCC---C
Q 016660          262 IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG---SQLS--LSSFEVLHSGKILMGSLFGGLK---A  333 (385)
Q Consensus       262 i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~---~~~~--~~~~~~~~~~~~i~g~~~~~~~---~  333 (385)
                      +...+++++|++||++|+.. +..++++++++ |+++.+|.....   ...+  .....+..+++++.++....+.   .
T Consensus       200 ~~~~~~~gvdvv~d~~G~~~-~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  277 (325)
T TIGR02825       200 LKKASPDGYDCYFDNVGGEF-SNTVIGQMKKF-GRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVR  277 (325)
T ss_pred             HHHhCCCCeEEEEECCCHHH-HHHHHHHhCcC-cEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhh
Confidence            44444448999999999876 79999999997 999999864311   1111  1233456678888887543321   1


Q ss_pred             CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          334 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      .+.+.++++++++|++.+.  +...|+|+++.+|++.+++++. +|+|+.
T Consensus       278 ~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       278 QKALKELLKWVLEGKIQYK--EYVIEGFENMPAAFMGMLKGENLGKTIVK  325 (325)
T ss_pred             HHHHHHHHHHHHCCCcccc--eeccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence            2357789999999988765  4467899999999999988775 488863

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=6.3e-38  Score=297.24  Aligned_cols=313  Identities=22%  Similarity=0.282  Sum_probs=256.0

Q ss_pred             eeEEEeccCCCC---cEEEEeecCCCCC-CeEEEEEeeeecccccccccccCCCCC-C----CCccccCceeEEEEEeCC
Q 016660           17 CRAAIATAPGEP---LVIDEVIVDPPNS-HEVRVRIICTSLCHSDVTFWKMKDFPA-V----FPRILGHEAIGVVESVGE   87 (385)
Q Consensus        17 ~~a~~~~~~~~~---l~~~~~~~p~~~~-~eVlVkv~a~~i~~~D~~~~~g~~~~~-~----~p~~~G~e~~G~V~~vG~   87 (385)
                      |||+++.+++.+   +.+.+.|.|.|.+ ++|+||+.++++|+.|+..+.|..+.. .    +|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            789999999875   7999999998887 999999999999999999888865431 2    577899999999999999


Q ss_pred             CCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCce
Q 016660           88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (385)
Q Consensus        88 ~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~  167 (385)
                      +++.|++||+|+....                                                +.|+|++|+.++.+.+
T Consensus        81 ~v~~~~~Gd~V~~~~~------------------------------------------------~~g~~~~~~~v~~~~~  112 (341)
T cd08290          81 GVKSLKPGDWVIPLRP------------------------------------------------GLGTWRTHAVVPADDL  112 (341)
T ss_pred             CCCCCCCCCEEEecCC------------------------------------------------CCccchheEeccHHHe
Confidence            9999999999974311                                                0138999999999999


Q ss_pred             EECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc----hHHHHH
Q 016660          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS----EKFEIG  242 (385)
Q Consensus       168 ~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~----~~~~~~  242 (385)
                      +++|+++++++++++++.+.|||+++.....++++++|||+|+ |++|++++|+|++.|+ +++++..++    ++.+.+
T Consensus       113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~  191 (341)
T cd08290         113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERL  191 (341)
T ss_pred             EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHH
Confidence            9999999999999999999999998877778999999999987 9999999999999999 677776555    678888


Q ss_pred             HHcCCCeEEeCCCC---CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhc
Q 016660          243 KRFGVTEFVNSKNC---GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS  319 (385)
Q Consensus       243 ~~lg~~~vv~~~~~---~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~  319 (385)
                      +++|+++++++++.   .....+..+.++++|++|||+|+.. +..++++++++ |+++.+|.... ....++...++.+
T Consensus       192 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~  268 (341)
T cd08290         192 KALGADHVLTEEELRSLLATELLKSAPGGRPKLALNCVGGKS-ATELARLLSPG-GTMVTYGGMSG-QPVTVPTSLLIFK  268 (341)
T ss_pred             HhcCCCEEEeCcccccccHHHHHHHHcCCCceEEEECcCcHh-HHHHHHHhCCC-CEEEEEeccCC-CCcccCHHHHhhC
Confidence            89999999988764   3444466665558999999999876 77899999997 99999986432 2345555566778


Q ss_pred             CcEEEEeeecCCCC-------CCcHHHHHHHHHcCCCCCCCceeeee---ecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          320 GKILMGSLFGGLKA-------KSDIPILLKRYMDKELELDKFVTHEM---KFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       320 ~~~i~g~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~i~~~~---~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      +.++.+........       .+.+..+++++.++.+.+.  ....+   +++++.++++.+.+++. +|+|++|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~  341 (341)
T cd08290         269 DITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAP--PVEKVTDDPLEEFKDALANALKGGGGGKQVLVM  341 (341)
T ss_pred             CceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCC--cccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence            99999886543210       1247778888989977654  33556   99999999999987765 4999875

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=2.3e-37  Score=292.73  Aligned_cols=309  Identities=18%  Similarity=0.166  Sum_probs=245.9

Q ss_pred             eEEEeccC---CCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCC
Q 016660           18 RAAIATAP---GEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (385)
Q Consensus        18 ~a~~~~~~---~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (385)
                      ||+++..+   +.+  +++.++|.|+|+++||+|||.++++|+.|+....+..+...+|.++|+|++|+|+++|+++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF   80 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            57777776   433  8888999999999999999999999999998887765544568899999999999999999999


Q ss_pred             CCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCC
Q 016660           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (385)
Q Consensus        93 ~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~  172 (385)
                      ++||+|+...                           +....                   |+|++|++++.+.++++|+
T Consensus        81 ~~Gd~V~~~~---------------------------~~~~~-------------------g~~~~~~~v~~~~~~~ip~  114 (336)
T TIGR02817        81 KPGDEVWYAG---------------------------DIDRP-------------------GSNAEFHLVDERIVGHKPK  114 (336)
T ss_pred             CCCCEEEEcC---------------------------CCCCC-------------------CcccceEEEcHHHcccCCC
Confidence            9999997421                           00111                   3899999999999999999


Q ss_pred             CCCcccccccccchhhhhhhhhhhccCCC-----CCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHHc
Q 016660          173 TVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRF  245 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~-----~~~VlI~G~-g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~l  245 (385)
                      ++++++++.+++.+.|||+++....++++     +++|||+|+ |++|++++|+|+.+ |+ +|+++.+++++.+.++++
T Consensus       115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~  193 (336)
T TIGR02817       115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLEL  193 (336)
T ss_pred             CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHc
Confidence            99999999999999999998877788877     999999986 99999999999998 99 899998889999999999


Q ss_pred             CCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEE
Q 016660          246 GVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  325 (385)
Q Consensus       246 g~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  325 (385)
                      |+++++++.. .....+.+...+++|+++|++++...+..++++++++ |+++.++..     ..++...+..+++++.+
T Consensus       194 g~~~~~~~~~-~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-G~~v~~~~~-----~~~~~~~~~~~~~~~~~  266 (336)
T TIGR02817       194 GAHHVIDHSK-PLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQ-GRFALIDDP-----AELDISPFKRKSISLHW  266 (336)
T ss_pred             CCCEEEECCC-CHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccC-CEEEEEccc-----ccccchhhhhcceEEEE
Confidence            9999998655 4444466643338999999987767689999999997 999988532     23344444555677665


Q ss_pred             eeec--CCCC-------CCcHHHHHHHHHcCCCCCCCceeeee---ecchHHHHHHHHhcCCe-eEEEEE
Q 016660          326 SLFG--GLKA-------KSDIPILLKRYMDKELELDKFVTHEM---KFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       326 ~~~~--~~~~-------~~~~~~~~~~~~~g~~~~~~~i~~~~---~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      ..+.  ....       .+.+.++++++.++.+.+.  +++.+   +++++++|++.+.+++. +|++++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       267 EFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTT--LAETFGTINAANLKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             EEeecccccchhhhhhhHHHHHHHHHHHHCCCeecc--chhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence            4332  1111       1346778899999976543  33444   47899999999988775 488764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=100.00  E-value=1.1e-37  Score=293.97  Aligned_cols=315  Identities=17%  Similarity=0.210  Sum_probs=253.9

Q ss_pred             eeeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           16 QCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        16 ~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      +||++++.+++.+  +++.++|.|+|.++||+|||.++++|++|+....+.++...+|.++|||++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK   80 (327)
T ss_pred             CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence            4899999988764  88899999999999999999999999999998888765555688999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|+...                             .                   +.|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~-----------------------------~-------------------~~g~~~~~v~v~~~~~~~lp~~  112 (327)
T PRK10754         81 VGDRVVYAQ-----------------------------S-------------------ALGAYSSVHNVPADKAAILPDA  112 (327)
T ss_pred             CCCEEEECC-----------------------------C-------------------CCcceeeEEEcCHHHceeCCCC
Confidence            999996310                             0                   1138999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +++++++.+++.+.|||.++.....+.++++|+|+|+ |.+|++++++|+.+|+ +|++++.++++.+.++++|++++++
T Consensus       113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~  191 (327)
T PRK10754        113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVIN  191 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEc
Confidence            9999999988899999998877788999999999975 9999999999999999 7888888999999999999999998


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEE-Eeee-c
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM-GSLF-G  329 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~-g~~~-~  329 (385)
                      .++......++.++++ ++|++||++|+.. +..++++++++ |+++.+|.... ....++...+..++..+. .... .
T Consensus       192 ~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  268 (327)
T PRK10754        192 YREENIVERVKEITGGKKVRVVYDSVGKDT-WEASLDCLQRR-GLMVSFGNASG-PVTGVNLGILNQKGSLYVTRPSLQG  268 (327)
T ss_pred             CCCCcHHHHHHHHcCCCCeEEEEECCcHHH-HHHHHHHhccC-CEEEEEccCCC-CCCCcCHHHHhccCceEEecceeec
Confidence            8775555557788877 8999999999855 88899999997 99999987532 112233333332222211 1111 1


Q ss_pred             CCCCC----CcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          330 GLKAK----SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       330 ~~~~~----~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      .....    +.+.++++++++|.+.+..+..+.|+++++.++++.+.++.. +|+||+
T Consensus       269 ~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  326 (327)
T PRK10754        269 YITTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLLI  326 (327)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence            11111    124567889999988765555689999999999999987765 599986

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.2e-36  Score=287.58  Aligned_cols=329  Identities=24%  Similarity=0.306  Sum_probs=268.9

Q ss_pred             eeEEEeccCC--CCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~--~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++...+  +.+++.+.+.|.+.++||+||+.++++|++|+....+.+.. ...|.++|||++|+|+++|+++++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK   80 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence            6899998664  33888888888889999999999999999999988776543 34678899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|+......|+.+.+|      +|.....   .|...+                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~------~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~  132 (336)
T cd08276          81 VGDRVVPTFFPNWLDGPPT------AEDEASA---LGGPID-------------------GVLAEYVVLPEEGLVRAPDH  132 (336)
T ss_pred             CCCEEEEeccccccccccc------ccccccc---cccccC-------------------ceeeeEEEecHHHeEECCCC
Confidence            9999998776666554443      3322111   222223                   38999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++.+++.+++.+.+||+++.....++++++|+|+|+|++|++++++|+..|+ +|++++.++++.+.++++|++.+++.
T Consensus       133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~  211 (336)
T cd08276         133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINY  211 (336)
T ss_pred             CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcC
Confidence            99999999999999999988777889999999999889999999999999999 78999889999999999999999987


Q ss_pred             CC-CCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          254 KN-CGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       254 ~~-~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      +. ......+..++++ ++|++||+++... +..++++++++ |+++.+|..... ........++.+++++.+..... 
T Consensus       212 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-  287 (336)
T cd08276         212 RTTPDWGEEVLKLTGGRGVDHVVEVGGPGT-LAQSIKAVAPG-GVISLIGFLSGF-EAPVLLLPLLTKGATLRGIAVGS-  287 (336)
T ss_pred             CcccCHHHHHHHHcCCCCCcEEEECCChHH-HHHHHHhhcCC-CEEEEEccCCCC-ccCcCHHHHhhcceEEEEEecCc-
Confidence            76 4455557777776 8999999998655 88999999997 999999875422 22445566678899999886543 


Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          332 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                        .+.+.+++++++++.+.+  +.++.+++++++++++.+.+++. +|++++
T Consensus       288 --~~~~~~~~~l~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  335 (336)
T cd08276         288 --RAQFEAMNRAIEAHRIRP--VIDRVFPFEEAKEAYRYLESGSHFGKVVIR  335 (336)
T ss_pred             --HHHHHHHHHHHHcCCccc--ccCcEEeHHHHHHHHHHHHhCCCCceEEEe
Confidence              357888899998886544  35688999999999999987765 488875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=100.00  E-value=7.9e-37  Score=287.45  Aligned_cols=313  Identities=20%  Similarity=0.221  Sum_probs=257.0

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC---CCCCCccccCceeEEEEEeCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      |||+++++++.+  +.+.+.+.|.+.+++|+|||.++++|+.|+....|..+   ...+|.++|||++|+|+++|+++++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            689999876643  66777777778999999999999999999988877543   2345788999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      +++||+|+....                            ..                   .|+|++|+.++.++++++|
T Consensus        81 ~~~Gd~V~~~~~----------------------------~~-------------------~g~~~~~~~v~~~~~~~lp  113 (324)
T cd08244          81 AWLGRRVVAHTG----------------------------RA-------------------GGGYAELAVADVDSLHPVP  113 (324)
T ss_pred             CCCCCEEEEccC----------------------------CC-------------------CceeeEEEEEchHHeEeCC
Confidence            999999975310                            01                   2389999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v  250 (385)
                      +++++++++.+++.+.||| ++....+++++++|+|+|+ |.+|++++++|+..|+ +|+++++++++.+.++++|++.+
T Consensus       114 ~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~  191 (324)
T cd08244         114 DGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVA  191 (324)
T ss_pred             CCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEE
Confidence            9999999999999999995 4667788999999999996 9999999999999999 79999889999999999999989


Q ss_pred             EeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeec
Q 016660          251 VNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  329 (385)
Q Consensus       251 v~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  329 (385)
                      +++.+......+.+++++ ++|+++|++|+.. ...++++++.+ |+++.+|..... ...++...++.+++++.+....
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~  268 (324)
T cd08244         192 VDYTRPDWPDQVREALGGGGVTVVLDGVGGAI-GRAALALLAPG-GRFLTYGWASGE-WTALDEDDARRRGVTVVGLLGV  268 (324)
T ss_pred             EecCCccHHHHHHHHcCCCCceEEEECCChHh-HHHHHHHhccC-cEEEEEecCCCC-CCccCHHHHhhCCcEEEEeecc
Confidence            988775555557777776 8999999999886 68999999997 999999875322 2355555667789998887644


Q ss_pred             CCCC---CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          330 GLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       330 ~~~~---~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      ....   .+.+.++++++.++.+.  +++++.|+++++.+|++.+.+++. +|+++++
T Consensus       269 ~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  324 (324)
T cd08244         269 QAERGGLRALEARALAEAAAGRLV--PVVGQTFPLERAAEAHAALEARSTVGKVLLLP  324 (324)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCcc--CccceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence            3211   23566788889888664  346789999999999999987765 4988763

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-36  Score=286.94  Aligned_cols=314  Identities=22%  Similarity=0.266  Sum_probs=256.1

Q ss_pred             eeeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCC
Q 016660           16 QCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGV   92 (385)
Q Consensus        16 ~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~   92 (385)
                      ||||+++.+++.+  +++.+.+.|++.+++|+|||.++++|+.|+....+..+. ...|.++|||++|+|+++|++++++
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            5999999988753  667788888889999999999999999999888776532 3446789999999999999999999


Q ss_pred             CCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCC
Q 016660           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (385)
Q Consensus        93 ~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~  172 (385)
                      ++||+|+...                              .+                   |+|++|++++.++++++|+
T Consensus        81 ~~Gd~V~~~~------------------------------~~-------------------g~~~~~~~v~~~~~~~ip~  111 (334)
T PTZ00354         81 KEGDRVMALL------------------------------PG-------------------GGYAEYAVAHKGHVMHIPQ  111 (334)
T ss_pred             CCCCEEEEec------------------------------CC-------------------CceeeEEEecHHHcEeCCC
Confidence            9999996321                              11                   3899999999999999999


Q ss_pred             CCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE
Q 016660          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv  251 (385)
                      ++++.+++.+++++.|||+++.+...+.++++|||+|+ |.+|++++++|+.+|+ +++++.+++++.+.++++|+++++
T Consensus       112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  190 (334)
T PTZ00354        112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILI  190 (334)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEE
Confidence            99999999999999999998877788999999999996 9999999999999999 666677889999999999999899


Q ss_pred             eCCCCC-chhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCccc-ccHHHHhhcCcEEEEeee
Q 016660          252 NSKNCG-DKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVLHSGKILMGSLF  328 (385)
Q Consensus       252 ~~~~~~-~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~~~~~~i~g~~~  328 (385)
                      ++...+ ....+.+.+++ ++|++||++++.. +..++++++++ |+++.+|...+ ..+. ++...++.++.++.++..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~-g~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  267 (334)
T PTZ00354        191 RYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSY-LSETAEVLAVD-GKWIVYGFMGG-AKVEKFNLLPLLRKRASIIFSTL  267 (334)
T ss_pred             ecCChhHHHHHHHHHhCCCCceEEEECCchHH-HHHHHHHhccC-CeEEEEecCCC-CcccccCHHHHHhhCCEEEeeec
Confidence            887643 44456777766 8999999998754 88999999997 99999986432 2223 666666777778888764


Q ss_pred             cCCCCC-------CcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          329 GGLKAK-------SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       329 ~~~~~~-------~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                      ......       +.+.+++++++++.+.+  ++.+.+++++++++++.+.+++. +|+++...
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~  329 (334)
T PTZ00354        268 RSRSDEYKADLVASFEREVLPYMEEGEIKP--IVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVN  329 (334)
T ss_pred             cccchhhhHHHHHHHHHHHHHHHHCCCccC--ccccEEcHHHHHHHHHHHHhCCCCceEEEecC
Confidence            432110       22466778888886654  46688999999999999887764 59998764

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=100.00  E-value=2.7e-36  Score=283.97  Aligned_cols=313  Identities=19%  Similarity=0.191  Sum_probs=245.6

Q ss_pred             eeEEEeccCCC--CcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++.++++  ++++++.|.|.+.+++|+|||.++++|++|+..+.|.++. ..+|.++|||++|+|+++  +++.|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~   78 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR   78 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence            68999999886  6999999999999999999999999999999988887542 335778999999999999  456899


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|+....                        ..|+..+|                   +|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~------------------------~~g~~~~g-------------------~~~~~~~v~~~~~~~lp~~  115 (325)
T cd05280          79 EGDEVLVTGY------------------------DLGMNTDG-------------------GFAEYVRVPADWVVPLPEG  115 (325)
T ss_pred             CCCEEEEccc------------------------ccCCCCCc-------------------eeEEEEEEchhhEEECCCC
Confidence            9999985421                        02222233                   9999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhc--cCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTA--NVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~--~~~-~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~  249 (385)
                      +++++++.+++.+.|||.++....  ++. .+++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|+++
T Consensus       116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  194 (325)
T cd05280         116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASE  194 (325)
T ss_pred             CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcE
Confidence            999999999999999999875543  335 3579999997 9999999999999999 7999999999999999999999


Q ss_pred             EEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeee
Q 016660          250 FVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  328 (385)
Q Consensus       250 vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  328 (385)
                      ++++++.  .....+...+ ++|++||++|+.. +..++++++++ |+++.+|..... ...++...++.+++++.+...
T Consensus       195 ~~~~~~~--~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~  269 (325)
T cd05280         195 VLDREDL--LDESKKPLLKARWAGAIDTVGGDV-LANLLKQTKYG-GVVASCGNAAGP-ELTTTVLPFILRGVSLLGIDS  269 (325)
T ss_pred             EEcchhH--HHHHHHHhcCCCccEEEECCchHH-HHHHHHhhcCC-CEEEEEecCCCC-ccccccchheeeeeEEEEEEe
Confidence            9887652  2223343444 8999999999864 99999999997 999999975422 224455555578999988765


Q ss_pred             cCCCC---CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          329 GGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       329 ~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      .....   .+.++.+.+++..+..   +.+...|++++++++++.+.+++. +|+|+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  325 (325)
T cd05280         270 VNCPMELRKQVWQKLATEWKPDLL---EIVVREISLEELPEAIDRLLAGKHRGRTVVKI  325 (325)
T ss_pred             ecCchhHHHHHHHHHHHHHhcCCc---cceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence            43211   0123334444445522   236789999999999999988775 4988864

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=100.00  E-value=6.3e-36  Score=282.08  Aligned_cols=311  Identities=24%  Similarity=0.257  Sum_probs=251.7

Q ss_pred             eeeEEEeccCCC----CcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCC
Q 016660           16 QCRAAIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        16 ~~~a~~~~~~~~----~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      .||||++..++.    ++++.+.+.|.+.+++|+|||.++++|+.|+....|.+.. ..+|.++|||++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~   80 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT   80 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence            389999998775    4889999999999999999999999999999988776543 45788999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      +|++||+|+...                                                  .|+|++|+.++.+.++++
T Consensus        81 ~~~~Gd~V~~~~--------------------------------------------------~g~~~s~~~v~~~~~~~i  110 (329)
T cd08250          81 DFKVGDAVATMS--------------------------------------------------FGAFAEYQVVPARHAVPV  110 (329)
T ss_pred             CCCCCCEEEEec--------------------------------------------------CcceeEEEEechHHeEEC
Confidence            999999997421                                                  238999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~  249 (385)
                      |++  +.+++.+++++.|||+++.+..+++++++|+|+|+ |.+|++++++|+..|+ .|+++.+++++.+.++++|++.
T Consensus       111 p~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  187 (329)
T cd08250         111 PEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDR  187 (329)
T ss_pred             CCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCce
Confidence            997  35677888899999998877788999999999996 9999999999999999 7888888889999999999988


Q ss_pred             EEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCC---------cccccHHHHhhcC
Q 016660          250 FVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS---------QLSLSSFEVLHSG  320 (385)
Q Consensus       250 vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~---------~~~~~~~~~~~~~  320 (385)
                      +++.++......+....++++|++||++|+. .+..++++++++ |+++.+|......         ...++ ...+.++
T Consensus       188 v~~~~~~~~~~~~~~~~~~~vd~v~~~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~  264 (329)
T cd08250         188 PINYKTEDLGEVLKKEYPKGVDVVYESVGGE-MFDTCVDNLALK-GRLIVIGFISGYQSGTGPSPVKGATLP-PKLLAKS  264 (329)
T ss_pred             EEeCCCccHHHHHHHhcCCCCeEEEECCcHH-HHHHHHHHhccC-CeEEEEecccCCcccCccccccccccc-HHHhhcC
Confidence            8887764444445554444899999999975 489999999997 9999998653211         11222 2345678


Q ss_pred             cEEEEeeecCCC--CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEE
Q 016660          321 KILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  382 (385)
Q Consensus       321 ~~i~g~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~-k~vi~  382 (385)
                      +++.+.....+.  ..+.+.+++++++++.+.+.....+.++++++++|++.+.+++.. |++++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  329 (329)
T cd08250         265 ASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGKVVVE  329 (329)
T ss_pred             ceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence            888887643221  124567788999999776643344668999999999999877654 88764

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=100.00  E-value=7.7e-36  Score=282.72  Aligned_cols=312  Identities=24%  Similarity=0.300  Sum_probs=246.3

Q ss_pred             eeEEEeccCC-CCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||++++.++ ..+++.+.|.|+|+++||+|||.++++|++|+....+.+ ...+|.++|||++|+|+.+|+++++|++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG   79 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence            6899999995 238899999999999999999999999999998876654 12357789999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      |+|+..+...|+                      +..                   ..|+|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~----------------------~~~-------------------~~g~~~~~~~v~~~~~~~ip~~~~  118 (339)
T cd08249          80 DRVAGFVHGGNP----------------------NDP-------------------RNGAFQEYVVADADLTAKIPDNIS  118 (339)
T ss_pred             CEEEEEeccccC----------------------CCC-------------------CCCcccceEEechhheEECCCCCC
Confidence            999865432221                      001                   124899999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhccC----------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANV----------EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~----------~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  244 (385)
                      +.+++++++.+.|||+++.+..++          .++++|||+|+ |.+|++++++|+.+|+ +|+++. ++++.+.+++
T Consensus       119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~  196 (339)
T cd08249         119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKS  196 (339)
T ss_pred             HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHh
Confidence            999999999999999987666544          78999999997 9999999999999999 777776 5688899999


Q ss_pred             cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhcc--CCceEEEeccCCCCCcccccHHHHhhcCcE
Q 016660          245 FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRK--GWGKTIVLGVDQPGSQLSLSSFEVLHSGKI  322 (385)
Q Consensus       245 lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~--~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  322 (385)
                      +|+++++++++......++.++++++|++||++|++..+..+++++++  + |+++.+|......  .      +..+..
T Consensus       197 ~g~~~v~~~~~~~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~-g~~v~~g~~~~~~--~------~~~~~~  267 (339)
T cd08249         197 LGADAVFDYHDPDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGG-GKLVSLLPVPEET--E------PRKGVK  267 (339)
T ss_pred             cCCCEEEECCCchHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCC-CEEEEecCCCccc--c------CCCCce
Confidence            999999998875555557666666899999999986669999999999  8 9999998653221  0      112233


Q ss_pred             EEEeeecCC---------CCCCcHHHHHHHHHcCCCCCCCceeeeee--cchHHHHHHHHhcCC-e-eEEEEEe
Q 016660          323 LMGSLFGGL---------KAKSDIPILLKRYMDKELELDKFVTHEMK--FEEINSAFDLLIKGK-C-LRCVIWM  383 (385)
Q Consensus       323 i~g~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~i~~~~~--l~~~~~a~~~l~~~~-~-~k~vi~~  383 (385)
                      +........         .....+..++++++++.+.+.+.  ..++  ++++++|++.+..++ . +|+|+++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~  339 (339)
T cd08249         268 VKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPV--RVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL  339 (339)
T ss_pred             EEEEEeeeecccccccccchHHHHHHHHHHHHcCCccCCCc--eecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence            222221111         11234667888999998776533  4566  999999999998877 5 4999874

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=100.00  E-value=1.3e-35  Score=279.14  Aligned_cols=299  Identities=20%  Similarity=0.241  Sum_probs=249.9

Q ss_pred             cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCC
Q 016660           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCT  107 (385)
Q Consensus        29 l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~  107 (385)
                      +++.+.|.|.+.+++|+|||.++++|+.|...+.+.+.. ..+|.++|||++|+|+++|++++++++||+|+..+.    
T Consensus        14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----   89 (323)
T cd05282          14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG----   89 (323)
T ss_pred             EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence            667788888899999999999999999999988776542 346789999999999999999999999999974320    


Q ss_pred             CCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCcccccccccchh
Q 016660          108 ECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS  187 (385)
Q Consensus       108 ~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~  187 (385)
                                                .                   |+|++|+.++.+.++++|+++++.+++.+++.+.
T Consensus        90 --------------------------~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~  124 (323)
T cd05282          90 --------------------------E-------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL  124 (323)
T ss_pred             --------------------------C-------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence                                      1                   3899999999999999999999999999999999


Q ss_pred             hhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhh
Q 016660          188 TGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMT  266 (385)
Q Consensus       188 ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~  266 (385)
                      |||+++.....+.++++|||+|+ |.+|++++++|+.+|+ +++++.+++++.+.++++|+++++++++......+.+++
T Consensus       125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  203 (323)
T cd05282         125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEAT  203 (323)
T ss_pred             HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHHh
Confidence            99998877778899999999987 9999999999999999 788888888999999999999999987755555577777


Q ss_pred             CC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC-------CCcHH
Q 016660          267 DG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA-------KSDIP  338 (385)
Q Consensus       267 ~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-------~~~~~  338 (385)
                      ++ ++|++||++|+.. ....+++++++ |+++.+|..... ...++...+..++.++.+..+..+..       .+.+.
T Consensus       204 ~~~~~d~vl~~~g~~~-~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (323)
T cd05282         204 GGAGARLALDAVGGES-ATRLARSLRPG-GTLVNYGLLSGE-PVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFA  280 (323)
T ss_pred             cCCCceEEEECCCCHH-HHHHHHhhCCC-CEEEEEccCCCC-CCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHH
Confidence            77 8999999999877 67889999997 999999875433 34556655555799999887654321       13477


Q ss_pred             HHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          339 ILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       339 ~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      ++++++.++.+.+  .+++.|+++++.++++.+.+++. +|++++
T Consensus       281 ~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  323 (323)
T cd05282         281 EVIKLVEAGVLTT--PVGAKFPLEDFEEAVAAAEQPGRGGKVLLT  323 (323)
T ss_pred             HHHHHHhCCCccc--CccceecHHHHHHHHHHHhcCCCCceEeeC
Confidence            7888888997654  35788999999999999987765 488763

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=2.6e-36  Score=281.84  Aligned_cols=302  Identities=25%  Similarity=0.376  Sum_probs=228.1

Q ss_pred             cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-C---CCCccccCceeEEE---EEeC-CCCCCCCCCCEEEe
Q 016660           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-A---VFPRILGHEAIGVV---ESVG-ENVDGVVEGDVVIP  100 (385)
Q Consensus        29 l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~---~~p~~~G~e~~G~V---~~vG-~~v~~~~~GdrV~~  100 (385)
                      ....+.|+|.|.+++++|++.++++|+.|+.+.+|.+.. .   .+|.+++.++.|.+   ...| ..+..+..||++..
T Consensus        20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~   99 (347)
T KOG1198|consen   20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA   99 (347)
T ss_pred             EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence            556788999999999999999999999999999998865 3   46755655555553   3344 22334555555532


Q ss_pred             cCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCccccc
Q 016660          101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC  180 (385)
Q Consensus       101 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~aa  180 (385)
                                                                       +...|+|+||++++...++++|+++++.+||
T Consensus       100 -------------------------------------------------~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa  130 (347)
T KOG1198|consen  100 -------------------------------------------------FLSSGGLAEYVVVPEKLLVKIPESLSFEEAA  130 (347)
T ss_pred             -------------------------------------------------ccCCCceeeEEEcchhhccCCCCccChhhhh
Confidence                                                             2223499999999999999999999999999


Q ss_pred             ccccchhhhhhhhhhhc------cCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          181 LLSCGVSTGVGAAWRTA------NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~------~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      ++++++.|||.++....      +.+++++|||+|+ |++|++++|+|++.|+ ..+++.++++++++++++|+++++||
T Consensus       131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy  209 (347)
T KOG1198|consen  131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDY  209 (347)
T ss_pred             cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecC
Confidence            99999999999999998      8999999999976 9999999999999996 45555589999999999999999999


Q ss_pred             CCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCC---CCcccccHH-HHhhcCcEEEEeee-
Q 016660          254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP---GSQLSLSSF-EVLHSGKILMGSLF-  328 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~---~~~~~~~~~-~~~~~~~~i~g~~~-  328 (385)
                      ++.+..+.+.+.+.++||+||||+|+.. ......++..+ |+...++...+   ..... ... .+........+... 
T Consensus       210 ~~~~~~e~~kk~~~~~~DvVlD~vg~~~-~~~~~~~l~~~-g~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  286 (347)
T KOG1198|consen  210 KDENVVELIKKYTGKGVDVVLDCVGGST-LTKSLSCLLKG-GGGAYIGLVGDELANYKLD-DLWQSANGIKLYSLGLKGV  286 (347)
T ss_pred             CCHHHHHHHHhhcCCCccEEEECCCCCc-cccchhhhccC-CceEEEEeccccccccccc-cchhhhhhhhheeeeeecc
Confidence            9977777788888449999999999985 77778888886 76544443221   11111 000 01111111111110 


Q ss_pred             -----cCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          329 -----GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       329 -----~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                           ......+.+..+.++++++  .+++.+.+.||++++.+|++.+.+++. +|+++.+.+
T Consensus       287 ~~~~~~~~~~~~~l~~l~~~ie~g--kikp~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~~~  347 (347)
T KOG1198|consen  287 NYRWLYFVPSAEYLKALVELIEKG--KIKPVIDSVYPFSQAKEAFEKLEKSHATGKVVLEKDV  347 (347)
T ss_pred             ceeeeeecCCHHHHHHHHHHHHcC--cccCCcceeeeHHHHHHHHHHHhhcCCcceEEEEecC
Confidence                 1112245688899999999  555558999999999999999988664 699998763

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3.3e-35  Score=274.95  Aligned_cols=303  Identities=24%  Similarity=0.353  Sum_probs=246.2

Q ss_pred             ccCCCCcEEEEeecCCCCCCeEEEEEeeeeccccccccc-ccCCCC--CCCCccccCceeEEEEEeCCCCCCCCCCCEEE
Q 016660           23 TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW-KMKDFP--AVFPRILGHEAIGVVESVGENVDGVVEGDVVI   99 (385)
Q Consensus        23 ~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~-~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV~   99 (385)
                      ++++. +++.+++.|++.++||+|||.++++|+.|+..+ .+....  +.+|.++|+|++|+|+++|++++++++||+|+
T Consensus         2 ~~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   80 (312)
T cd08269           2 TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA   80 (312)
T ss_pred             CCCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence            34554 899999999999999999999999999999887 665421  23478899999999999999999999999997


Q ss_pred             ecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCcccc
Q 016660          100 PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA  179 (385)
Q Consensus       100 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~a  179 (385)
                      ...                                                  .|+|++|+.++.+.++++|+++  ..+
T Consensus        81 ~~~--------------------------------------------------~g~~~~~~~v~~~~~~~lP~~~--~~~  108 (312)
T cd08269          81 GLS--------------------------------------------------GGAFAEYDLADADHAVPLPSLL--DGQ  108 (312)
T ss_pred             Eec--------------------------------------------------CCcceeeEEEchhheEECCCch--hhh
Confidence            431                                                  1389999999999999999998  233


Q ss_pred             cccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCch
Q 016660          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK  259 (385)
Q Consensus       180 a~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~  259 (385)
                      +.+..++.++|+++. ..+++++++|||+|+|.+|++++++|+..|++.|+++.+++++.++++++|++++++.++....
T Consensus       109 ~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  187 (312)
T cd08269         109 AFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIV  187 (312)
T ss_pred             HHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHH
Confidence            322367888988764 7889999999999889999999999999999448989888999999999999999887665566


Q ss_pred             hHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC-CCCCcH
Q 016660          260 SIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL-KAKSDI  337 (385)
Q Consensus       260 ~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~-~~~~~~  337 (385)
                      ..+.+++++ ++|++||++|+...+..++++++++ |+++.+|... .....+++..+..+++.+.+...... ...+.+
T Consensus       188 ~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-g~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (312)
T cd08269         188 ERVRELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQ-DGPRPVPFQTWNWKGIDLINAVERDPRIGLEGM  265 (312)
T ss_pred             HHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCC-CCCcccCHHHHhhcCCEEEEecccCccchhhHH
Confidence            667777777 8999999999887789999999997 9999998653 33345555566667888877643222 123578


Q ss_pred             HHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe--eEEEE
Q 016660          338 PILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC--LRCVI  381 (385)
Q Consensus       338 ~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~--~k~vi  381 (385)
                      ++++++++++.+.+..++.+.|+++++.++++.+.++..  +|+++
T Consensus       266 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  311 (312)
T cd08269         266 REAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI  311 (312)
T ss_pred             HHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence            889999999987765456688999999999999988754  58876

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.6e-35  Score=276.34  Aligned_cols=298  Identities=21%  Similarity=0.285  Sum_probs=242.5

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      ||++++.+++ |  +++.+.|.|.+.++||+|||.++++|+.|++.....    ..|.++|||++|+|+++|++++.|++
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~   75 (305)
T cd08270           1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAV   75 (305)
T ss_pred             CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCC
Confidence            5888888754 3  677788999999999999999999999999876522    23668999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      ||+|+...                              .                   .|+|++|+.++.+.++++|+++
T Consensus        76 Gd~V~~~~------------------------------~-------------------~g~~~~~~~v~~~~~~~ip~~~  106 (305)
T cd08270          76 GARVVGLG------------------------------A-------------------MGAWAELVAVPTGWLAVLPDGV  106 (305)
T ss_pred             CCEEEEec------------------------------C-------------------CcceeeEEEEchHHeEECCCCC
Confidence            99996321                              1                   1389999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      ++++++++++.+.|||+++...... ++++|+|+|+ |++|++++++|+..|+ +|+++.+++++.+.++++|++.+++.
T Consensus       107 ~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~  184 (305)
T cd08270         107 SFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVVG  184 (305)
T ss_pred             CHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEec
Confidence            9999999999999999987555544 5999999998 9999999999999999 79999889999999999998766543


Q ss_pred             CCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhh--cCcEEEEeeecC-
Q 016660          254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLH--SGKILMGSLFGG-  330 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~--~~~~i~g~~~~~-  330 (385)
                      .+        ++.++++|+++|++|+.. +..++++++.+ |+++.+|... .....++...+..  ++.++.+..... 
T Consensus       185 ~~--------~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (305)
T cd08270         185 GS--------ELSGAPVDLVVDSVGGPQ-LARALELLAPG-GTVVSVGSSS-GEPAVFNPAAFVGGGGGRRLYTFFLYDG  253 (305)
T ss_pred             cc--------cccCCCceEEEECCCcHH-HHHHHHHhcCC-CEEEEEeccC-CCcccccHHHHhcccccceEEEEEccCH
Confidence            32        122347999999999875 89999999997 9999998753 3334455555544  588888876543 


Q ss_pred             CCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          331 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       331 ~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      ....+.+..++++++++++.+.  +.+.+++++++++++.+.+++. +|+++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  305 (305)
T cd08270         254 EPLAADLARLLGLVAAGRLDPR--IGWRGSWTEIDEAAEALLARRFRGKAVLDV  305 (305)
T ss_pred             HHHHHHHHHHHHHHHCCCccce--eccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            1112457788899999977654  6689999999999999987765 4998864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=100.00  E-value=4e-35  Score=276.22  Aligned_cols=315  Identities=17%  Similarity=0.205  Sum_probs=240.9

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCC-CCCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++.+++++  +.+.+.|.|.|.++||+||+.++++|++|.....+.. ....+|.++|||++|+|+++|  +++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~   78 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK   78 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence            689999988764  7788999999999999999999999999987654322 123458899999999999964  57799


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|+..+..                        .|....                   |+|++|+.++++.++++|++
T Consensus        79 ~Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~v~~~~~~~~p~~  115 (326)
T cd08289          79 PGDEVIVTSYD------------------------LGVSHH-------------------GGYSEYARVPAEWVVPLPKG  115 (326)
T ss_pred             CCCEEEEcccc------------------------cCCCCC-------------------CcceeEEEEcHHHeEECCCC
Confidence            99999854310                        122222                   39999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhh--cc-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRT--AN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~--~~-~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~  249 (385)
                      +++++++.+++.+.|||.++...  .. ...+++|||+|+ |.+|++++|+|+.+|+ +|+++++++++.+.++++|+++
T Consensus       116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  194 (326)
T cd08289         116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKE  194 (326)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCE
Confidence            99999999999999999876432  23 334789999998 9999999999999999 7999989999999999999999


Q ss_pred             EEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeec
Q 016660          250 FVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  329 (385)
Q Consensus       250 vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  329 (385)
                      +++.++. ....+..+.++++|++||++|+. .+..++++++++ |+++.+|... ....+++...++.+++++.+....
T Consensus       195 v~~~~~~-~~~~~~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~-G~~i~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~  270 (326)
T cd08289         195 VIPREEL-QEESIKPLEKQRWAGAVDPVGGK-TLAYLLSTLQYG-GSVAVSGLTG-GGEVETTVFPFILRGVNLLGIDSV  270 (326)
T ss_pred             EEcchhH-HHHHHHhhccCCcCEEEECCcHH-HHHHHHHHhhcC-CEEEEEeecC-CCCCCcchhhhhhccceEEEEEeE
Confidence            9887763 22335555434899999999985 489999999997 9999999753 223444456666789999997532


Q ss_pred             CCCCCCcHHHHHHHHHcCCCC---CCCceeeeeecchHHHHHHHHhcCCee-EEEEEe
Q 016660          330 GLKAKSDIPILLKRYMDKELE---LDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  383 (385)
Q Consensus       330 ~~~~~~~~~~~~~~~~~g~~~---~~~~i~~~~~l~~~~~a~~~l~~~~~~-k~vi~~  383 (385)
                      ... ......+++.+.. .+.   ....+++.|+++++.+||+.+.+++.. |+++++
T Consensus       271 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~  326 (326)
T cd08289         271 ECP-MELRRRIWRRLAT-DLKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL  326 (326)
T ss_pred             ecC-chHHHHHHHHHHh-hcCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence            210 1122333333322 222   122357899999999999999887764 888763

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=100.00  E-value=1.1e-34  Score=272.88  Aligned_cols=310  Identities=18%  Similarity=0.198  Sum_probs=243.0

Q ss_pred             eEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        18 ~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      ||+++...+.|  +++++.|.|.+.+++|+|||.++++|++|+..+.|.+.. ..+|.++|||++|+|+.  +++.+|++
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~   78 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE   78 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence            57788877764  689999999999999999999999999999988886532 34588899999999998  56678999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      ||+|+.....                        .|....                   |+|++|+.++.+.++++|+++
T Consensus        79 Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~~~~~~~~~iP~~~  115 (323)
T TIGR02823        79 GDEVIVTGYG------------------------LGVSHD-------------------GGYSQYARVPADWLVPLPEGL  115 (323)
T ss_pred             CCEEEEccCC------------------------CCCCCC-------------------ccceEEEEEchhheEECCCCC
Confidence            9999854210                        122222                   389999999999999999999


Q ss_pred             Ccccccccccchhhhhhhhhhh--ccCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE
Q 016660          175 PPNRACLLSCGVSTGVGAAWRT--ANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~--~~~~~~~-~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v  250 (385)
                      ++++++++++.+.|||.++...  .++.+++ +|||+|+ |.+|++++++|+.+|+ +++++..++++.+.++++|++++
T Consensus       116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~  194 (323)
T TIGR02823       116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEV  194 (323)
T ss_pred             CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEE
Confidence            9999999999999998876433  3478898 9999997 9999999999999999 67777778888899999999988


Q ss_pred             EeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecC
Q 016660          251 VNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  330 (385)
Q Consensus       251 v~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  330 (385)
                      ++.++..  ..++.+..+++|+++|++|+.. +..++++++++ |+++.+|... ....+++...++.+++++.+.....
T Consensus       195 ~~~~~~~--~~~~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  269 (323)
T TIGR02823       195 IDREDLS--PPGKPLEKERWAGAVDTVGGHT-LANVLAQLKYG-GAVAACGLAG-GPDLPTTVLPFILRGVSLLGIDSVY  269 (323)
T ss_pred             EccccHH--HHHHHhcCCCceEEEECccHHH-HHHHHHHhCCC-CEEEEEcccC-CCCccccHHHHhhcceEEEEEeccc
Confidence            8876522  2344555557999999999875 88999999997 9999999753 2334444455667899998875432


Q ss_pred             CCCCC----cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEE
Q 016660          331 LKAKS----DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  382 (385)
Q Consensus       331 ~~~~~----~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~-k~vi~  382 (385)
                      .. ..    .+..+.+++..+.+..  + .+.|+++++++||+.+.+++.. |++++
T Consensus       270 ~~-~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~~~a~~~~~~~~~~~k~vv~  322 (323)
T TIGR02823       270 CP-MALREAAWQRLATDLKPRNLES--I-TREITLEELPEALEQILAGQHRGRTVVD  322 (323)
T ss_pred             cC-chhHHHHHHHHHHHhhcCCCcC--c-eeeecHHHHHHHHHHHhCCCccceEEEe
Confidence            21 12    2445555666775543  3 4689999999999999887754 88876

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=6e-35  Score=273.85  Aligned_cols=312  Identities=23%  Similarity=0.309  Sum_probs=247.0

Q ss_pred             eeEEEeccCCC--CcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        17 ~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      ||++++.+++.  .+++.+.+.|.+.++||+|||.++++|+.|+....+.+.....|.++|||++|+|+++|+  ..+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~   78 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP   78 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence            57888887764  266778888888999999999999999999998888765455678999999999999995  57999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      ||+|+.....                        ++...+                   |+|++|+.++.+.++++|+++
T Consensus        79 Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~~~~~~~~~ip~~~  115 (320)
T cd08243          79 GQRVATAMGG------------------------MGRTFD-------------------GSYAEYTLVPNEQVYAIDSDL  115 (320)
T ss_pred             CCEEEEecCC------------------------CCCCCC-------------------cccceEEEcCHHHcEeCCCCC
Confidence            9999764210                        111112                   389999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      ++++++.+++++.|||+++.+...+.++++|||+|+ |++|++++|+|+.+|+ +|+++..++++.+.++++|++++++.
T Consensus       116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~  194 (320)
T cd08243         116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID  194 (320)
T ss_pred             CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec
Confidence            999999999999999998877778999999999997 9999999999999999 79988889999999999999888754


Q ss_pred             CCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcc-cccHHHHh--hcCcEEEEeeecC
Q 016660          254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL-SLSSFEVL--HSGKILMGSLFGG  330 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~--~~~~~i~g~~~~~  330 (385)
                      .. .....+.++ +.++|+++|++|+.. +..++++++++ |+++.+|...+.... ........  .+++++.+.....
T Consensus       195 ~~-~~~~~i~~~-~~~~d~vl~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (320)
T cd08243         195 DG-AIAEQLRAA-PGGFDKVLELVGTAT-LKDSLRHLRPG-GIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGD  270 (320)
T ss_pred             Cc-cHHHHHHHh-CCCceEEEECCChHH-HHHHHHHhccC-CEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhh
Confidence            32 344446666 448999999999854 89999999997 999999874322211 11222222  4677777664322


Q ss_pred             CCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEE
Q 016660          331 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  381 (385)
Q Consensus       331 ~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi  381 (385)
                      .. .+.+.+++++++++.+.+  +.++.++++++++|++.+.++.. +|+++
T Consensus       271 ~~-~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~a~~~~~~~~~~~kvvv  319 (320)
T cd08243         271 VP-QTPLQELFDFVAAGHLDI--PPSKVFTFDEIVEAHAYMESNRAFGKVVV  319 (320)
T ss_pred             hh-HHHHHHHHHHHHCCceec--ccccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence            21 235778889999997654  35688999999999999987765 47775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=100.00  E-value=1.1e-34  Score=274.41  Aligned_cols=313  Identities=19%  Similarity=0.146  Sum_probs=249.8

Q ss_pred             eeEEEeccCCCC-----cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCC
Q 016660           17 CRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        17 ~~a~~~~~~~~~-----l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      |||+++.+++++     +++.++|.|.+.+++|+||+.++++|+.|+....+..+...+|.++|||++|+|+++|++++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~   80 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL   80 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence            579999998874     556677888889999999999999999999987776543345778999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      |++||+|.....                           ...+                   |+|++|+.++.++++++|
T Consensus        81 ~~~Gd~V~~~~~---------------------------~~~~-------------------g~~~~~~~v~~~~~~~ip  114 (336)
T cd08252          81 FKVGDEVYYAGD---------------------------ITRP-------------------GSNAEYQLVDERIVGHKP  114 (336)
T ss_pred             CCCCCEEEEcCC---------------------------CCCC-------------------ccceEEEEEchHHeeeCC
Confidence            999999974210                           0112                   389999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCC-----CCEEEEEcC-CHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHH
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR  244 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~-----~~~VlI~G~-g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~  244 (385)
                      +++++++++.+++.+.|||+++.+...+.+     +++|+|+|+ |++|++++++|+.+| + +|+++++++++.+++++
T Consensus       115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~  193 (336)
T cd08252         115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKE  193 (336)
T ss_pred             CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHh
Confidence            999999999999999999998877788877     999999986 999999999999999 7 89999888999999999


Q ss_pred             cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEE
Q 016660          245 FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  324 (385)
Q Consensus       245 lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  324 (385)
                      +|+++++++++ .....+.....+++|++||++|+...+..++++++++ |+++.+|...    ..++...+..++.++.
T Consensus       194 ~g~~~~~~~~~-~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~----~~~~~~~~~~~~~~~~  267 (336)
T cd08252         194 LGADHVINHHQ-DLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQ-GHICLIVDPQ----EPLDLGPLKSKSASFH  267 (336)
T ss_pred             cCCcEEEeCCc-cHHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCC-CEEEEecCCC----CcccchhhhcccceEE
Confidence            99999998775 3434454333238999999999876699999999997 9999998642    2344444556788888


Q ss_pred             EeeecCCC--C-------CCcHHHHHHHHHcCCCCCCCc-eeeeeecchHHHHHHHHhcCCee-EEEEE
Q 016660          325 GSLFGGLK--A-------KSDIPILLKRYMDKELELDKF-VTHEMKFEEINSAFDLLIKGKCL-RCVIW  382 (385)
Q Consensus       325 g~~~~~~~--~-------~~~~~~~~~~~~~g~~~~~~~-i~~~~~l~~~~~a~~~l~~~~~~-k~vi~  382 (385)
                      +..+....  .       .+.+.++++++.++.+.+... ..+.+++++++++++.+.++... |++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  336 (336)
T cd08252         268 WEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVLE  336 (336)
T ss_pred             EEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence            76543211  1       123677889999997765311 12457999999999999887754 87763

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=100.00  E-value=7.7e-34  Score=267.25  Aligned_cols=313  Identities=15%  Similarity=0.151  Sum_probs=245.1

Q ss_pred             eeEEEeccCCC--CcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++.+++.  .+++++.|.|+|++++|+|||.++++|+.|+..+.+.+.. ..+|.++|||++|+|++  +++++++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   78 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK   78 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence            68999998885  3889999999999999999999999999999988776532 34577899999999999  7778899


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|+....              +          .|....                   |+|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~--------------~----------~~~~~~-------------------g~~~~~~~v~~~~~~~lp~~  115 (324)
T cd08288          79 PGDRVVLTGW--------------G----------VGERHW-------------------GGYAQRARVKADWLVPLPEG  115 (324)
T ss_pred             CCCEEEECCc--------------c----------CCCCCC-------------------CcceeEEEEchHHeeeCCCC
Confidence            9999975310              0          010112                   38999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhh--hhccCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe
Q 016660          174 VPPNRACLLSCGVSTGVGAAW--RTANVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~--~~~~~~-~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~  249 (385)
                      +++++++.+++.+.|++.++.  ...+.. ++++|||+|+ |++|++++|+|+.+|+ +|++++.++++.++++++|+++
T Consensus       116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~  194 (324)
T cd08288         116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASE  194 (324)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCE
Confidence            999999999999999887643  123445 5789999997 9999999999999999 7888888999999999999999


Q ss_pred             EEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeec
Q 016660          250 FVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  329 (385)
Q Consensus       250 vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  329 (385)
                      ++++++  ....+..++.+++|.+||++++.. +..++..++.+ |+++.+|... .....+++..++.+++++.+.+..
T Consensus       195 ~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~-g~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~  269 (324)
T cd08288         195 IIDRAE--LSEPGRPLQKERWAGAVDTVGGHT-LANVLAQTRYG-GAVAACGLAG-GADLPTTVMPFILRGVTLLGIDSV  269 (324)
T ss_pred             EEEcch--hhHhhhhhccCcccEEEECCcHHH-HHHHHHHhcCC-CEEEEEEecC-CCCCCcchhhhhccccEEEEEEee
Confidence            998876  222355555557899999999754 77888899996 9999998752 223334555555789999987543


Q ss_pred             CCCC---CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEEe
Q 016660          330 GLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  383 (385)
Q Consensus       330 ~~~~---~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~-k~vi~~  383 (385)
                      ....   .+.+..+.+++..+.+.+   +.+.+++++++++++.+.+++.. |+++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~a~~~~~~~~~~~~vvv~~  324 (324)
T cd08288         270 MAPIERRRAAWARLARDLDPALLEA---LTREIPLADVPDAAEAILAGQVRGRVVVDV  324 (324)
T ss_pred             cccchhhHHHHHHHHHHHhcCCccc---cceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence            3221   123555666777775543   35899999999999999887754 888764

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=100.00  E-value=6.3e-34  Score=266.61  Aligned_cols=310  Identities=22%  Similarity=0.286  Sum_probs=253.2

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++.+++.+  +++.+.+.|.+.+++|+|||.++++|+.|+....+.+.. ..+|.++|||++|+|+++|+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK   80 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence            689999886543  778888888889999999999999999999888776532 34678999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|+...                              .+                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~------------------------------~~-------------------g~~~~~~~~~~~~~~~~p~~  111 (323)
T cd05276          81 VGDRVCALL------------------------------AG-------------------GGYAEYVVVPAGQLLPVPEG  111 (323)
T ss_pred             CCCEEEEec------------------------------CC-------------------CceeEEEEcCHHHhccCCCC
Confidence            999996421                              11                   38999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +++.+++.++.++.++|+++.+...+.++++|+|+|+ |++|++++++++..|+ +|+++.+++++.+.++++|++.+++
T Consensus       112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  190 (323)
T cd05276         112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAIN  190 (323)
T ss_pred             CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEe
Confidence            9999999999999999998877788999999999997 9999999999999999 7899988889999999999988888


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      .........+..++.+ ++|++||++|+.. +..++++++++ |+++.+|.... ....++...++.+++++.+......
T Consensus       191 ~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~~~~~-g~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  267 (323)
T cd05276         191 YRTEDFAEEVKEATGGRGVDVILDMVGGDY-LARNLRALAPD-GRLVLIGLLGG-AKAELDLAPLLRKRLTLTGSTLRSR  267 (323)
T ss_pred             CCchhHHHHHHHHhCCCCeEEEEECCchHH-HHHHHHhhccC-CEEEEEecCCC-CCCCCchHHHHHhCCeEEEeeccch
Confidence            7764454556666666 8999999999877 88899999997 99999986432 2234555556678999988865442


Q ss_pred             CCC-------CcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEE
Q 016660          332 KAK-------SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  381 (385)
Q Consensus       332 ~~~-------~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi  381 (385)
                      ...       +.+.++++++.++.+.+  +.++.|++++++++++.+.++.. +|+++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  323 (323)
T cd05276         268 SLEEKAALAAAFREHVWPLFASGRIRP--VIDKVFPLEEAAEAHRRMESNEHIGKIVL  323 (323)
T ss_pred             hhhccHHHHHHHHHHHHHHHHCCCccC--CcceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            111       12456778888886643  46789999999999999987664 37653

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=1.9e-33  Score=263.04  Aligned_cols=310  Identities=23%  Similarity=0.272  Sum_probs=250.7

Q ss_pred             eEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        18 ~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      ||+.+..++.+  +.+.+.+.|.+.+++|+|||.++++|+.|+....+.+.. .+|.++|||++|+|+.+|+++++|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G   79 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG   79 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence            46666665543  667777777789999999999999999999988776543 457789999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      |+|....                              .                   .|+|++|+.++.+.++++|++++
T Consensus        80 ~~V~~~~------------------------------~-------------------~g~~~~~~~~~~~~~~~~p~~~~  110 (320)
T cd05286          80 DRVAYAG------------------------------P-------------------PGAYAEYRVVPASRLVKLPDGIS  110 (320)
T ss_pred             CEEEEec------------------------------C-------------------CCceeEEEEecHHHceeCCCCCC
Confidence            9997421                              0                   13899999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      +.+++.+++.+.++|+++....++.++++|||+|+ |++|++++++|+.+|+ .|++++.++++.++++++|++++++..
T Consensus       111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~  189 (320)
T cd05286         111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYR  189 (320)
T ss_pred             HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCC
Confidence            99999999999999998877888999999999996 9999999999999999 789988899999999999999998877


Q ss_pred             CCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          255 NCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       255 ~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      +......+..++.+ ++|++|||+++. ....++++++++ |+++.+|..... ...++...+..+++++.+.....+..
T Consensus       190 ~~~~~~~~~~~~~~~~~d~vl~~~~~~-~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (320)
T cd05286         190 DEDFVERVREITGGRGVDVVYDGVGKD-TFEGSLDSLRPR-GTLVSFGNASGP-VPPFDLLRLSKGSLFLTRPSLFHYIA  266 (320)
T ss_pred             chhHHHHHHHHcCCCCeeEEEECCCcH-hHHHHHHhhccC-cEEEEEecCCCC-CCccCHHHHHhcCcEEEEEehhhhcC
Confidence            64555557777766 899999999985 488999999997 999999864322 23344444547788887654333221


Q ss_pred             C-----CcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          334 K-----SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       334 ~-----~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      .     +.+.++++++.++.+.+.  .++.|+++++.++++.+..+.. +|+++++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~~vv~~~  320 (320)
T cd05286         267 TREELLARAAELFDAVASGKLKVE--IGKRYPLADAAQAHRDLESRKTTGKLLLIP  320 (320)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCcCc--ccceEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            1     234567788888866543  5688999999999999987765 4888753

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=100.00  E-value=8.4e-34  Score=248.77  Aligned_cols=299  Identities=21%  Similarity=0.203  Sum_probs=245.2

Q ss_pred             cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEe--CCCCCCCCCCCEEEecCCCCC
Q 016660           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESV--GENVDGVVEGDVVIPHFLADC  106 (385)
Q Consensus        29 l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~v--G~~v~~~~~GdrV~~~~~~~~  106 (385)
                      +++++.++|+|+++|||+|..|.+++|.....++... .=..|.-+|...+|.++..  -|+.++|++||.|+..     
T Consensus        27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~~-SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~-----  100 (340)
T COG2130          27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDAP-SYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV-----  100 (340)
T ss_pred             ceeEeccCCCCCcCceEEEEEEeccCHHHeecccCCc-ccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec-----
Confidence            9999999999999999999999999996555443322 1123677888877766663  3667889999999632     


Q ss_pred             CCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCcccc--ccccc
Q 016660          107 TECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA--CLLSC  184 (385)
Q Consensus       107 ~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~a--a~l~~  184 (385)
                                                                     .+|++|.+++.+.+.+++++.-+..+  ..|..
T Consensus       101 -----------------------------------------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGm  133 (340)
T COG2130         101 -----------------------------------------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM  133 (340)
T ss_pred             -----------------------------------------------ccceEEEeechhhceecCCCCCCcchHHhhcCC
Confidence                                                           18999999999999999876433333  34677


Q ss_pred             chhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCCCchhHH
Q 016660          185 GVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSII  262 (385)
Q Consensus       185 ~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~~~~~~i  262 (385)
                      +..|||.+|.+.+..++|++|+|.|| |++|..+.|+||..|+ +||++..+++|..++++ +|.+.++||+.+++.+.+
T Consensus       134 pG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L  212 (340)
T COG2130         134 PGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQAL  212 (340)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHH
Confidence            89999999999999999999999987 9999999999999999 99999999999999998 999999999998888888


Q ss_pred             HHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCC--CCC---cccccHHHHhhcCcEEEEeeecCCCC---C
Q 016660          263 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ--PGS---QLSLSSFEVLHSGKILMGSLFGGLKA---K  334 (385)
Q Consensus       263 ~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~--~~~---~~~~~~~~~~~~~~~i~g~~~~~~~~---~  334 (385)
                      .+.++.|.|+.||++|++. +..++..|+.. +|++.+|...  +..   ..+-....++.+.+++.|+.+.....   .
T Consensus       213 ~~a~P~GIDvyfeNVGg~v-~DAv~~~ln~~-aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~  290 (340)
T COG2130         213 KEACPKGIDVYFENVGGEV-LDAVLPLLNLF-ARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFP  290 (340)
T ss_pred             HHHCCCCeEEEEEcCCchH-HHHHHHhhccc-cceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhH
Confidence            8888889999999999999 99999999996 9999998532  122   12333456777899999998733221   2


Q ss_pred             CcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEEeCC
Q 016660          335 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMGE  385 (385)
Q Consensus       335 ~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~-k~vi~~~~  385 (385)
                      +.++++..++++|+|..+.  +-+-.||.+++||.-|.++++. |+|+++.+
T Consensus       291 e~~~~l~~wv~~GKi~~~e--ti~dGlEnaP~Af~gLl~G~N~GK~vvKv~~  340 (340)
T COG2130         291 EALRELGGWVKEGKIQYRE--TIVDGLENAPEAFIGLLSGKNFGKLVVKVAD  340 (340)
T ss_pred             HHHHHHHHHHHcCceeeEe--eehhhhhccHHHHHHHhcCCccceEEEEecC
Confidence            4567888999999998884  3345699999999999998875 99999864

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=100.00  E-value=2.4e-33  Score=263.06  Aligned_cols=316  Identities=24%  Similarity=0.297  Sum_probs=254.0

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC-CCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      ||++++..++.+  +.+.+.|.|.+.+++|+||+.++++|++|+....+.+. ...+|.++|||++|+|+++|+++++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   80 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK   80 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence            578888876543  77889999999999999999999999999998877654 245688999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|+..+..                        .+ ...                   |++++|+.++.+.++++|++
T Consensus        81 ~Gd~v~~~~~~------------------------~~-~~~-------------------g~~~~~~~~~~~~~~~ip~~  116 (325)
T cd08253          81 VGDRVWLTNLG------------------------WG-RRQ-------------------GTAAEYVVVPADQLVPLPDG  116 (325)
T ss_pred             CCCEEEEeccc------------------------cC-CCC-------------------cceeeEEEecHHHcEeCCCC
Confidence            99999765310                        00 011                   38999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +++.+++.+++++.+||+++....++.++++|+|+|+ |++|++++++++..|+ +|+++++++++.+.+.++|++++++
T Consensus       117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  195 (325)
T cd08253         117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFN  195 (325)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEe
Confidence            9999999999999999998877788999999999996 9999999999999999 7999988899999999999998888


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      .........+...+.+ ++|+++|++++.. ....+++++.+ |+++.+|...  ....++...++.++.++.+......
T Consensus       196 ~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-g~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  271 (325)
T cd08253         196 YRAEDLADRILAATAGQGVDVIIEVLANVN-LAKDLDVLAPG-GRIVVYGSGG--LRGTIPINPLMAKEASIRGVLLYTA  271 (325)
T ss_pred             CCCcCHHHHHHHHcCCCceEEEEECCchHH-HHHHHHhhCCC-CEEEEEeecC--CcCCCChhHHHhcCceEEeeehhhc
Confidence            7765555556666666 8999999999876 78889999997 9999998753  2334555555667888877652221


Q ss_pred             C---CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          332 K---AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       332 ~---~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      .   ..+.+..+.+++.++.+.+  +.++.|++++++++++.+.++.. +|+++++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  325 (325)
T cd08253         272 TPEERAAAAEAIAAGLADGALRP--VIAREYPLEEAAAAHEAVESGGAIGKVVLDP  325 (325)
T ss_pred             CHHHHHHHHHHHHHHHHCCCccC--ccccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            1   0123445566777775543  36688999999999999987665 4888753

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=100.00  E-value=5.3e-34  Score=271.27  Aligned_cols=308  Identities=21%  Similarity=0.250  Sum_probs=236.7

Q ss_pred             eeEEEeccCCCC---cEEEEeecCCC-CCCeEEEEEeeeecccccccccccCCC---------------CCCCCccccCc
Q 016660           17 CRAAIATAPGEP---LVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDF---------------PAVFPRILGHE   77 (385)
Q Consensus        17 ~~a~~~~~~~~~---l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~---------------~~~~p~~~G~e   77 (385)
                      |||+++.+++++   +++.+.+.|.| .+++|+|||+++++|++|+....+...               ...+|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            688998888875   88899999999 499999999999999999998876421               23458899999


Q ss_pred             eeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeecccccccee
Q 016660           78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS  157 (385)
Q Consensus        78 ~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~  157 (385)
                      ++|+|+++|+++++|++||+|+..+..                                              +..|+|+
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~----------------------------------------------~~~g~~~  114 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVPP----------------------------------------------WSQGTHA  114 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecCC----------------------------------------------CCCccce
Confidence            999999999999999999999754210                                              0124899


Q ss_pred             eeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhccCCC----CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE
Q 016660          158 EYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV----GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (385)
Q Consensus       158 ~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~----~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~  232 (385)
                      +|+.++.+.++++|+++++..++.+++.+.|||+++.....+.+    +++|+|+|+ |++|++++++|+.+|+ +|+++
T Consensus       115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~  193 (350)
T cd08248         115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT  193 (350)
T ss_pred             eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence            99999999999999999999999999999999998766666654    999999996 9999999999999999 67777


Q ss_pred             cCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCc--c
Q 016660          233 DVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ--L  309 (385)
Q Consensus       233 ~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~--~  309 (385)
                      .+ +++.+.++++|++++++..+.....   .+..+ ++|++||++|+. ....++++++++ |+++.+|.......  .
T Consensus       194 ~~-~~~~~~~~~~g~~~~~~~~~~~~~~---~l~~~~~vd~vi~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~  267 (350)
T cd08248         194 CS-TDAIPLVKSLGADDVIDYNNEDFEE---ELTERGKFDVILDTVGGD-TEKWALKLLKKG-GTYVTLVSPLLKNTDKL  267 (350)
T ss_pred             eC-cchHHHHHHhCCceEEECCChhHHH---HHHhcCCCCEEEECCChH-HHHHHHHHhccC-CEEEEecCCcccccccc
Confidence            65 4678888999998888876633332   22333 799999999988 489999999997 99999985421111  1


Q ss_pred             ccc------HHHHhhc-------CcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe
Q 016660          310 SLS------SFEVLHS-------GKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC  376 (385)
Q Consensus       310 ~~~------~~~~~~~-------~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~  376 (385)
                      .+.      ...+...       ...+....  .....+.+.++++++.++.+.+  ++++.|+++++.++++.+.+++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~  343 (350)
T cd08248         268 GLVGGMLKSAVDLLKKNVKSLLKGSHYRWGF--FSPSGSALDELAKLVEDGKIKP--VIDKVFPFEEVPEAYEKVESGHA  343 (350)
T ss_pred             cccchhhhhHHHHHHHHHHHHhcCCCeeEEE--ECCCHHHHHHHHHHHhCCCEec--ccceeecHHHHHHHHHHHhcCCC
Confidence            110      0011111       11111110  1112356888999999996543  46789999999999999987765


Q ss_pred             -eEEEE
Q 016660          377 -LRCVI  381 (385)
Q Consensus       377 -~k~vi  381 (385)
                       .|+++
T Consensus       344 ~~~vv~  349 (350)
T cd08248         344 RGKTVI  349 (350)
T ss_pred             ceEEEe
Confidence             47776

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.4e-33  Score=265.27  Aligned_cols=310  Identities=24%  Similarity=0.318  Sum_probs=245.4

Q ss_pred             eeEEEeccCC--CCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           17 CRAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        17 ~~a~~~~~~~--~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      |||+++.+|+  +.+.+.+.|.|++.+++|+|||.++++|++|+....+.......|.++|||++|+|+.+|++++++++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~   80 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV   80 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence            6999999999  35999999999999999999999999999999887776543334678999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      ||+|+..+.                           ....                   |+|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~---------------------------~~~~-------------------~~~~s~~~~~~~~~~~ip~~~  114 (325)
T cd08271          81 GDRVAYHAS---------------------------LARG-------------------GSFAEYTVVDARAVLPLPDSL  114 (325)
T ss_pred             CCEEEeccC---------------------------CCCC-------------------ccceeEEEeCHHHeEECCCCC
Confidence            999975421                           1112                   389999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      ++.+++.+++.+.+|++++.+..++.++++|+|+|+ |.+|++++++|+..|+ .|+++. ++++.+.+.++|++.+++.
T Consensus       115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~  192 (325)
T cd08271         115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDY  192 (325)
T ss_pred             CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecC
Confidence            999999999999999998878888999999999998 8999999999999999 677775 6778888889999988887


Q ss_pred             CCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC-
Q 016660          254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL-  331 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~-  331 (385)
                      ........+..++.+ ++|+++|++++.. ...++++++++ |+++.++......    ... .+.+++.+....+... 
T Consensus       193 ~~~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-G~~v~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~  265 (325)
T cd08271         193 NDEDVCERIKEITGGRGVDAVLDTVGGET-AAALAPTLAFN-GHLVCIQGRPDAS----PDP-PFTRALSVHEVALGAAH  265 (325)
T ss_pred             CCccHHHHHHHHcCCCCCcEEEECCCcHh-HHHHHHhhccC-CEEEEEcCCCCCc----chh-HHhhcceEEEEEecccc
Confidence            775555557777766 8999999999876 66789999997 9999987542211    111 1223333333222111 


Q ss_pred             ---------CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          332 ---------KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       332 ---------~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                               ...+.+.+++++++++.+.+  +..+.|+++++.++++.+.++.. .|+++++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~  325 (325)
T cd08271         266 DHGDPAAWQDLRYAGEELLELLAAGKLEP--LVIEVLPFEQLPEALRALKDRHTRGKIVVTI  325 (325)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHCCCeee--ccceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence                     01123566788888886654  34588999999999999987765 4888763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1e-33  Score=258.92  Aligned_cols=268  Identities=31%  Similarity=0.441  Sum_probs=222.7

Q ss_pred             eEEEEEeeeecccccccccccCCC-CCCCCccccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCC
Q 016660           43 EVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS  121 (385)
Q Consensus        43 eVlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~  121 (385)
                      ||+|||.++++|+.|+..+.+... ...+|.++|||++|+|+++|++++.|++||+|+..+..+|+.|++|+.    .|.
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~   76 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP   76 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence            689999999999999999888764 345678999999999999999999999999999999999999999997    665


Q ss_pred             CCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhccCCC
Q 016660          122 AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV  201 (385)
Q Consensus       122 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~  201 (385)
                      ....   .+....|                   +|++|+.++.+.++++|+++++++++.+++++.|||+++.....+.+
T Consensus        77 ~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~  134 (271)
T cd05188          77 GGGI---LGEGLDG-------------------GFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP  134 (271)
T ss_pred             CCCE---eccccCC-------------------cceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence            4442   3333333                   99999999999999999999999999999999999998877777799


Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCCh
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLA  280 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~  280 (385)
                      +++|||+|+|++|++++++++..|. +|+++++++++.+.++++|++++++..+......+. ...+ ++|++||+++..
T Consensus       135 ~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         135 GDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELR-LTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHH-HhcCCCCCEEEECCCCH
Confidence            9999999986699999999999998 899999999999999999999888877755544444 4444 899999999995


Q ss_pred             HHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHH
Q 016660          281 SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKR  343 (385)
Q Consensus       281 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~  343 (385)
                      ...+.++++++++ |+++.+|....... ......++.+++++.++.....   +++++++++
T Consensus       213 ~~~~~~~~~l~~~-G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  270 (271)
T cd05188         213 ETLAQALRLLRPG-GRIVVVGGTSGGPP-LDDLRRLLFKELTIIGSTGGTR---EDFEEALDL  270 (271)
T ss_pred             HHHHHHHHhcccC-CEEEEEccCCCCCC-cccHHHHHhcceEEEEeecCCH---HHHHHHHhh
Confidence            5589999999997 99999997643322 2224456778999999875433   466666654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2.6e-33  Score=263.25  Aligned_cols=311  Identities=22%  Similarity=0.249  Sum_probs=250.0

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC-CCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++.+++.+  +++.+.+.|.+.+++|+|||.++++|++|+....+... ....|.++|||++|+|+++|+++.+|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR   80 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence            689999988865  77888888888999999999999999999988777543 233577899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|+....                          |..                  ...|+|++|+.++.++++++|++
T Consensus        81 ~Gd~V~~~~~--------------------------~~~------------------~~~g~~~~~~~v~~~~~~~~p~~  116 (326)
T cd08272          81 VGDEVYGCAG--------------------------GLG------------------GLQGSLAEYAVVDARLLALKPAN  116 (326)
T ss_pred             CCCEEEEccC--------------------------CcC------------------CCCCceeEEEEecHHHcccCCCC
Confidence            9999975321                          000                  01248999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +++..++.+++.+.+||+++.+..++.++++++|+|+ |.+|++++++|+..|+ +|+++.++ ++.+.++++|++.+++
T Consensus       117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~  194 (326)
T cd08272         117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIY  194 (326)
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEe
Confidence            9999999999999999998878889999999999986 9999999999999999 78888777 8888899999988888


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecC-
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG-  330 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~-  330 (385)
                      .... ....+..++.+ ++|+++|++++.. +..++++++++ |+++.++...   ...+  .....+++++.+..... 
T Consensus       195 ~~~~-~~~~~~~~~~~~~~d~v~~~~~~~~-~~~~~~~l~~~-g~~v~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~  266 (326)
T cd08272         195 YRET-VVEYVAEHTGGRGFDVVFDTVGGET-LDASFEAVALY-GRVVSILGGA---THDL--APLSFRNATYSGVFTLLP  266 (326)
T ss_pred             cchh-HHHHHHHhcCCCCCcEEEECCChHH-HHHHHHHhccC-CEEEEEecCC---ccch--hhHhhhcceEEEEEcccc
Confidence            7764 44457777777 8999999999865 88899999997 9999998652   1222  22335688887775322 


Q ss_pred             -CC------CCCcHHHHHHHHHcCCCCCCCcee-eeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          331 -LK------AKSDIPILLKRYMDKELELDKFVT-HEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       331 -~~------~~~~~~~~~~~~~~g~~~~~~~i~-~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                       ..      ..+.+.+++++++++.+.+  +++ +.|+++++.++++.+.+++. .|+++++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  326 (326)
T cd08272         267 LLTGEGRAHHGEILREAARLVERGQLRP--LLDPRTFPLEEAAAAHARLESGSARGKIVIDV  326 (326)
T ss_pred             cccccchhhHHHHHHHHHHHHHCCCccc--ccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence             10      1234667888888886543  344 88999999999999987664 4888764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=100.00  E-value=5e-33  Score=264.86  Aligned_cols=316  Identities=18%  Similarity=0.214  Sum_probs=235.6

Q ss_pred             eEEEeccCCCCcEEEEeecCCC---CCCeEEEEEeeeecccccccccccCCCCC-CCCccccCceeEEEEEeCCCCC-CC
Q 016660           18 RAAIATAPGEPLVIDEVIVDPP---NSHEVRVRIICTSLCHSDVTFWKMKDFPA-VFPRILGHEAIGVVESVGENVD-GV   92 (385)
Q Consensus        18 ~a~~~~~~~~~l~~~~~~~p~~---~~~eVlVkv~a~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~v~-~~   92 (385)
                      |++++.+++.++++++++.|.|   .+++|+|||.++++|++|+..+.+..... ..|.++|+|++|+|+++|++++ +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~   81 (352)
T cd08247           2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW   81 (352)
T ss_pred             ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence            6899999988888887777766   89999999999999999998775432221 2377899999999999999998 89


Q ss_pred             CCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC----ceE
Q 016660           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA----HVV  168 (385)
Q Consensus        93 ~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~----~~~  168 (385)
                      ++||+|+......|                       +  .                   .|+|++|++++.+    .++
T Consensus        82 ~~Gd~V~~~~~~~~-----------------------~--~-------------------~g~~~~~~~v~~~~~~~~~~  117 (352)
T cd08247          82 KVGDEVCGIYPHPY-----------------------G--G-------------------QGTLSQYLLVDPKKDKKSIT  117 (352)
T ss_pred             CCCCEEEEeecCCC-----------------------C--C-------------------CceeeEEEEEccccccceeE
Confidence            99999976432110                       0  1                   2389999999987    789


Q ss_pred             ECCCCCCcccccccccchhhhhhhhhhhc-cCCCCCEEEEEcC-CHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHHc
Q 016660          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF  245 (385)
Q Consensus       169 ~iP~~l~~~~aa~l~~~~~ta~~al~~~~-~~~~~~~VlI~G~-g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~l  245 (385)
                      ++|+++++.+++.+++.+.|||+++.+.. .++++++|+|+|+ |.+|++++++|+.+| .++|+++. ++++.+.++++
T Consensus       118 ~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~  196 (352)
T cd08247         118 RKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKL  196 (352)
T ss_pred             ECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHh
Confidence            99999999999999999999999886666 7999999999987 899999999999874 43677775 45556678899


Q ss_pred             CCCeEEeCCCCC---chhHHHHhhC-C-CccEEEEccCChHHHHHHHHHhc---cCCceEEEeccCCCCC--ccc-----
Q 016660          246 GVTEFVNSKNCG---DKSIIIDMTD-G-GADYCFECVGLASLVQEAYACCR---KGWGKTIVLGVDQPGS--QLS-----  310 (385)
Q Consensus       246 g~~~vv~~~~~~---~~~~i~~~~~-g-~~d~vid~~g~~~~~~~~~~~l~---~~~G~~v~~g~~~~~~--~~~-----  310 (385)
                      |+++++++++..   ....+.+.+. + ++|++|||+|+......++++++   ++ |+++.++......  ...     
T Consensus       197 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~-G~~v~~~~~~~~~~~~~~~~~~~  275 (352)
T cd08247         197 GADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKN-GHYVTIVGDYKANYKKDTFNSWD  275 (352)
T ss_pred             CCCEEEecCCCcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCC-CEEEEEeCCCcccccchhhhhcc
Confidence            999999887744   3333444443 4 89999999999766889999999   97 9999875221110  000     


Q ss_pred             ---ccHHHHh----hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          311 ---LSSFEVL----HSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       311 ---~~~~~~~----~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                         .....+.    .+...+.......  ..+.+.++++++.++.+.  +++++.++++++++|++.+++++. +|++++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~  351 (352)
T cd08247         276 NPSANARKLFGSLGLWSYNYQFFLLDP--NADWIEKCAELIADGKVK--PPIDSVYPFEDYKEAFERLKSNRAKGKVVIK  351 (352)
T ss_pred             ccchhhhhhhhhhcCCCcceEEEEecC--CHHHHHHHHHHHhCCCeE--eeeccEecHHHHHHHHHHHHcCCCCCcEEEe
Confidence               0011111    1122222111111  124577788999999654  346789999999999999987765 498886


Q ss_pred             e
Q 016660          383 M  383 (385)
Q Consensus       383 ~  383 (385)
                      +
T Consensus       352 ~  352 (352)
T cd08247         352 V  352 (352)
T ss_pred             C
Confidence            3

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.4e-32  Score=258.34  Aligned_cols=316  Identities=26%  Similarity=0.316  Sum_probs=251.5

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++...+.+  +.+.+.+.|.+.+++|+|+|.++++|+.|+....+.+.. ..+|.++|||++|+|+.+|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA   80 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence            578888876643  777788888889999999999999999999887776532 34577899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|+..+..                         +...                   .|++++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~-------------------------~~~~-------------------~g~~~~~~~~~~~~~~~~p~~  116 (328)
T cd08268          81 VGDRVSVIPAA-------------------------DLGQ-------------------YGTYAEYALVPAAAVVKLPDG  116 (328)
T ss_pred             CCCEEEecccc-------------------------ccCC-------------------CccceEEEEechHhcEeCCCC
Confidence            99999764321                         1111                   238999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +++.+++.+++++.++|.++.....+.++++|+|+|+ |.+|++++++++..|+ ++++++.++++.+.++++|++.+++
T Consensus       117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  195 (328)
T cd08268         117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIV  195 (328)
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEe
Confidence            9999999999999999998877788999999999997 9999999999999999 7888888888999888899988888


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      .+.......+..++.+ ++|+++|++++.. ...++++++++ |+++.+|.... ....++....+.+++.+.+......
T Consensus       196 ~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  272 (328)
T cd08268         196 TDEEDLVAEVLRITGGKGVDVVFDPVGGPQ-FAKLADALAPG-GTLVVYGALSG-EPTPFPLKAALKKSLTFRGYSLDEI  272 (328)
T ss_pred             cCCccHHHHHHHHhCCCCceEEEECCchHh-HHHHHHhhccC-CEEEEEEeCCC-CCCCCchHHHhhcCCEEEEEecccc
Confidence            7765555556677766 8999999999855 88899999997 99999986542 2233444445678998888765432


Q ss_pred             CC-CCc----HHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          332 KA-KSD----IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       332 ~~-~~~----~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      .. .+.    +..+.+++.++.+.+  +.+..|+++++.++++.+.++.. +|++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~  327 (328)
T cd08268         273 TLDPEARRRAIAFILDGLASGALKP--VVDRVFPFDDIVEAHRYLESGQQIGKIVVT  327 (328)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCCcC--CcccEEcHHHHHHHHHHHHcCCCCceEEEe
Confidence            11 112    344455566775544  35688999999999999887765 488876

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=100.00  E-value=5.2e-33  Score=262.14  Aligned_cols=306  Identities=20%  Similarity=0.204  Sum_probs=238.6

Q ss_pred             eeEEEeccCC------CCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC---CCCCCccccCceeEEEEEeCC
Q 016660           17 CRAAIATAPG------EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGE   87 (385)
Q Consensus        17 ~~a~~~~~~~------~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~   87 (385)
                      .|||.+....      +.+++.+.|.|++.+++|+|||.++++|+.|.....+...   +...+.++|+|++|+|+++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~   81 (329)
T cd05288           2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS   81 (329)
T ss_pred             CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence            3556654433      1288999999999999999999999999987655544321   111245789999999999996


Q ss_pred             CCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeecc-Cc
Q 016660           88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AH  166 (385)
Q Consensus        88 ~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~-~~  166 (385)
                      +  +|++||+|+..                                                    |+|++|+.++. +.
T Consensus        82 ~--~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~  107 (329)
T cd05288          82 P--DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASG  107 (329)
T ss_pred             C--CCCCCCEEecc----------------------------------------------------cceEEEEEecchhh
Confidence            4  79999999631                                                    17999999999 99


Q ss_pred             eEECCCCCC--cccccc-cccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH
Q 016660          167 VVKVDPTVP--PNRACL-LSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (385)
Q Consensus       167 ~~~iP~~l~--~~~aa~-l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  242 (385)
                      ++++|++++  +..++. +++++.|||+++.+...+.++++|||+|+ |.+|++++++|+..|+ +|+++++++++.+.+
T Consensus       108 ~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~  186 (329)
T cd05288         108 LRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWL  186 (329)
T ss_pred             cEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            999999995  445555 88899999998877788999999999996 9999999999999999 899998899999999


Q ss_pred             HH-cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcc----cccHHHHh
Q 016660          243 KR-FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL----SLSSFEVL  317 (385)
Q Consensus       243 ~~-lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~----~~~~~~~~  317 (385)
                      ++ +|+++++++++......+.+++++++|++||++|+.. +..++++++++ |+++.+|........    .++...++
T Consensus       187 ~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~  264 (329)
T cd05288         187 VEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVGGEI-LDAALTLLNKG-GRIALCGAISQYNATEPPGPKNLGNII  264 (329)
T ss_pred             HhhcCCceEEecCChhHHHHHHHhccCCceEEEEcchHHH-HHHHHHhcCCC-ceEEEEeeccCcccccccccccHHHHh
Confidence            88 9999999988755555566666558999999999854 89999999997 999999864322111    13344556


Q ss_pred             hcCcEEEEeeecCCCC--CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEE
Q 016660          318 HSGKILMGSLFGGLKA--KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  381 (385)
Q Consensus       318 ~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi  381 (385)
                      .++.++.+........  .+.+.++++++.++.+.+.+.  ..++++++.++++.+.+++. +|+++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~--~~~~l~~~~~a~~~~~~~~~~gkvvv  329 (329)
T cd05288         265 TKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYRED--VVEGLENAPEAFLGLFTGKNTGKLVV  329 (329)
T ss_pred             hCcceEEeecchhhHHHHHHHHHHHHHHHHCCCcccccc--ccccHHHHHHHHHHHhcCCCccceeC
Confidence            7889888876433211  134677888999998776533  45899999999999987665 37663

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.1e-32  Score=260.10  Aligned_cols=306  Identities=25%  Similarity=0.320  Sum_probs=238.1

Q ss_pred             eEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        18 ~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      ||+++...+.+  +++.+.+.|.|.+++|+|||.++++|+.|+.++.+.+.. ..+|.++|||++|+|+++|+++++|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~   81 (331)
T cd08273           2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV   81 (331)
T ss_pred             eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence            78888887754  888888999999999999999999999999988876543 346889999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      ||+|.....                              .                   |+|++|+.++.+.++++|+++
T Consensus        82 Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~~  112 (331)
T cd08273          82 GDRVAALTR------------------------------V-------------------GGNAEYINLDAKYLVPVPEGV  112 (331)
T ss_pred             CCEEEEeCC------------------------------C-------------------cceeeEEEechHHeEECCCCC
Confidence            999974310                              1                   389999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      ++.+++.+++++.|||+++.+..++.++++|+|+|+ |.+|++++++|+..|+ +|+++.. +++.+.++++|+.. ++.
T Consensus       113 ~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~  189 (331)
T cd08273         113 DAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-IDY  189 (331)
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-EcC
Confidence            999999999999999998877788999999999997 9999999999999999 7888876 88888889999754 444


Q ss_pred             CCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCccccc--HH----------HHhhcCc
Q 016660          254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS--SF----------EVLHSGK  321 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~--~~----------~~~~~~~  321 (385)
                      ...+....  ....+++|+++|++++.. +..++++++.+ |+++.+|...........  +.          .......
T Consensus       190 ~~~~~~~~--~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (331)
T cd08273         190 RTKDWLPA--MLTPGGVDVVFDGVGGES-YEESYAALAPG-GTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGR  265 (331)
T ss_pred             CCcchhhh--hccCCCceEEEECCchHH-HHHHHHHhcCC-CEEEEEccCCCCCCccccccchhhhhhhhhhhcceeccc
Confidence            43232222  333348999999999988 88999999997 999999865322221111  10          0111222


Q ss_pred             EEEEeeecCCC------CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEE
Q 016660          322 ILMGSLFGGLK------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  381 (385)
Q Consensus       322 ~i~g~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi  381 (385)
                      .+.+.......      ..+.+.+++++++++.+.+  ++.+.+++++++++++.+.++.. +|+|+
T Consensus       266 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvv~  330 (331)
T cd08273         266 RATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRP--KIAKRLPLSEVAEAHRLLESGKVVGKIVL  330 (331)
T ss_pred             eeEEEeechhcccCHHHHHHHHHHHHHHHHCCCccC--CcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence            33332211111      1245777889999996653  46688999999999999877665 47765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=100.00  E-value=1.9e-32  Score=257.09  Aligned_cols=312  Identities=22%  Similarity=0.256  Sum_probs=252.2

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+.+..++.+  +.+.+.+.|.+.+++|+|||.++++|+.|+....+.+.. ..+|.++|||++|+|+.+|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK   80 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence            578888876654  667777777789999999999999999999888776532 33578899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|+...                              .+                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~------------------------------~~-------------------~~~~~~~~~~~~~~~~ip~~  111 (325)
T TIGR02824        81 VGDRVCALV------------------------------AG-------------------GGYAEYVAVPAGQVLPVPEG  111 (325)
T ss_pred             CCCEEEEcc------------------------------CC-------------------CcceeEEEecHHHcEeCCCC
Confidence            999996421                              11                   38999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +++..++.+++++.|+|+++.+...+.++++|+|+|+ |++|++++++++..|+ +|+++.+++++.+.++++|++.+++
T Consensus       112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  190 (325)
T TIGR02824       112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAIN  190 (325)
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEe
Confidence            9999999999999999998778889999999999997 9999999999999999 7888888888888889999988887


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      .........+.....+ ++|+++|++|+.. ...++++++++ |+++.+|...... ..++...++.+++++.+......
T Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  267 (325)
T TIGR02824       191 YREEDFVEVVKAETGGKGVDVILDIVGGSY-LNRNIKALALD-GRIVQIGFQGGRK-AELDLGPLLAKRLTITGSTLRAR  267 (325)
T ss_pred             cCchhHHHHHHHHcCCCCeEEEEECCchHH-HHHHHHhhccC-cEEEEEecCCCCc-CCCChHHHHhcCCEEEEEehhhc
Confidence            7664454556666666 8999999999864 88899999997 9999998643222 25555566688999999875442


Q ss_pred             CC-------CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          332 KA-------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       332 ~~-------~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      ..       ...+.+++++++++.+.+  +.++.++++++.++++.+.++.. +|+++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  325 (325)
T TIGR02824       268 PVAEKAAIAAELREHVWPLLASGRVRP--VIDKVFPLEDAAQAHALMESGDHIGKIVLTV  325 (325)
T ss_pred             chhhhHHHHHHHHHHHHHHHHCCcccC--ccccEEeHHHHHHHHHHHHhCCCcceEEEeC
Confidence            11       112455677888886543  36688999999999999887765 4888753

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08251 polyketide_synthase polyketide synthase

Probab=100.00  E-value=1.2e-31  Score=249.33  Aligned_cols=292  Identities=24%  Similarity=0.306  Sum_probs=232.8

Q ss_pred             cCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccC
Q 016660           36 VDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRS  114 (385)
Q Consensus        36 ~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~  114 (385)
                      .|++.+++|+||+.++++|+.|+....+.+.. ..+|.++|+|++|+|+++|+++++|++||+|+....           
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-----------   70 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG-----------   70 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC-----------
Confidence            57788999999999999999999988876543 356889999999999999999999999999975421           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhh
Q 016660          115 KKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW  194 (385)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~  194 (385)
                                       ...                   |+|++|+.++.+.++++|+++++.+++.+++.+.|||+++ 
T Consensus        71 -----------------~~~-------------------g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-  113 (303)
T cd08251          71 -----------------ESM-------------------GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-  113 (303)
T ss_pred             -----------------CCC-------------------cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence                             011                   3899999999999999999999999999999999999976 


Q ss_pred             hhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccE
Q 016660          195 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADY  272 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~  272 (385)
                      +...++++++|+|+|+ |.+|++++|+|+.+|+ +|+++.+++++.+.++++|++.+++..+......+..++++ ++|+
T Consensus       114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~  192 (303)
T cd08251         114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRGVDV  192 (303)
T ss_pred             HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHcCCCCceE
Confidence            5788999999999975 9999999999999999 79999888899999999999999988775555567777777 8999


Q ss_pred             EEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC------CCCcHHHHHHHHHc
Q 016660          273 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK------AKSDIPILLKRYMD  346 (385)
Q Consensus       273 vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~~~~~~~~~~  346 (385)
                      ++|++++.. ...++++++++ |+++.+|.........++... +.++..+....+....      ..+.+.++++++++
T Consensus       193 v~~~~~~~~-~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (303)
T cd08251         193 VINTLSGEA-IQKGLNCLAPG-GRYVEIAMTALKSAPSVDLSV-LSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEE  269 (303)
T ss_pred             EEECCcHHH-HHHHHHHhccC-cEEEEEeccCCCccCccChhH-hhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHC
Confidence            999997654 88899999997 999999864322222333333 3334444433221111      11346678888888


Q ss_pred             CCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016660          347 KELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  381 (385)
Q Consensus       347 g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~-k~vi  381 (385)
                      +.+.+  +.++.|+++++.++++.+.++... |+++
T Consensus       270 g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  303 (303)
T cd08251         270 GELRP--TVSRIFPFDDIGEAYRYLSDRENIGKVVV  303 (303)
T ss_pred             CCccC--CCceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            86553  356889999999999999877654 7663

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=100.00  E-value=7.4e-32  Score=251.28  Aligned_cols=301  Identities=21%  Similarity=0.284  Sum_probs=240.4

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC---CCCCCccccCceeEEEEEeCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      |||+++..++..  +.+.+.+.|.+.+++|+|||.++++|+.|+..+.+...   ...+|.++|||++|+|+.+|+++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            678888887753  56677788888999999999999999999998877542   2345788999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      +++||+|+..+..                           ...                   |+|++|+.++...++++|
T Consensus        81 ~~~G~~V~~~~~~---------------------------~~~-------------------g~~~~~~~~~~~~~~~~p  114 (309)
T cd05289          81 FKVGDEVFGMTPF---------------------------TRG-------------------GAYAEYVVVPADELALKP  114 (309)
T ss_pred             CCCCCEEEEccCC---------------------------CCC-------------------CcceeEEEecHHHhccCC
Confidence            9999999754210                           011                   389999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v  250 (385)
                      +++++..++.+++.+.++|+++.+...+.++++|+|+|+ |.+|++++++++..|+ +|+++..++ +.+.++++|++++
T Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~  192 (309)
T cd05289         115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEV  192 (309)
T ss_pred             CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEE
Confidence            999999999999999999998777667899999999997 9999999999999999 788777666 8888889999888


Q ss_pred             EeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeec
Q 016660          251 VNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  329 (385)
Q Consensus       251 v~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  329 (385)
                      ++........    .+.+ ++|++||++++.. ...++++++++ |+++.+|.....  ..    ....+++.+....+.
T Consensus       193 ~~~~~~~~~~----~~~~~~~d~v~~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~~--~~----~~~~~~~~~~~~~~~  260 (309)
T cd05289         193 IDYTKGDFER----AAAPGGVDAVLDTVGGET-LARSLALVKPG-GRLVSIAGPPPA--EQ----AAKRRGVRAGFVFVE  260 (309)
T ss_pred             EeCCCCchhh----ccCCCCceEEEECCchHH-HHHHHHHHhcC-cEEEEEcCCCcc--hh----hhhhccceEEEEEec
Confidence            8876633322    3344 7999999999884 89999999997 999999864321  11    233456666665443


Q ss_pred             CCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEE
Q 016660          330 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  381 (385)
Q Consensus       330 ~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi  381 (385)
                      ..  .+.+.+++++++++.+.  +++++.|++++++++++.+.++.. .|+++
T Consensus       261 ~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  309 (309)
T cd05289         261 PD--GEQLAELAELVEAGKLR--PVVDRVFPLEDAAEAHERLESGHARGKVVL  309 (309)
T ss_pred             cc--HHHHHHHHHHHHCCCEE--EeeccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence            22  35788889999988654  346789999999999999887664 36653

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=5e-31  Score=247.08  Aligned_cols=309  Identities=25%  Similarity=0.385  Sum_probs=247.9

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCC-CCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGV   92 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~-~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~   92 (385)
                      |+|+++..++.+  +++.+.+ |.+. +++|+||+.++++|+.|+..+.+.+.. ...|.++|||++|+|+.+|++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF   79 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence            578888755433  7777777 7666 599999999999999999988776532 3346689999999999999999999


Q ss_pred             CCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCC
Q 016660           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (385)
Q Consensus        93 ~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~  172 (385)
                      ++||+|+...                              .                   .|++++|+.++.+.++++|+
T Consensus        80 ~~G~~V~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~~ip~  110 (323)
T cd08241          80 KVGDRVVALT------------------------------G-------------------QGGFAEEVVVPAAAVFPLPD  110 (323)
T ss_pred             CCCCEEEEec------------------------------C-------------------CceeEEEEEcCHHHceeCCC
Confidence            9999997531                              0                   13899999999999999999


Q ss_pred             CCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE
Q 016660          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv  251 (385)
                      ++++.+++.+...+.+||.++.....+.++++|+|+|+ |.+|++++++|+..|+ .|++++.++++.+.++++|++.++
T Consensus       111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  189 (323)
T cd08241         111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVI  189 (323)
T ss_pred             CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceee
Confidence            99999998898899999998777788999999999997 9999999999999999 788888888999999999998888


Q ss_pred             eCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecC
Q 016660          252 NSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  330 (385)
Q Consensus       252 ~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  330 (385)
                      +....+....+...+++ ++|+++|++|+.. +..++++++++ |+++.+|...... ..+.....+.+++++.+.....
T Consensus       190 ~~~~~~~~~~i~~~~~~~~~d~v~~~~g~~~-~~~~~~~~~~~-g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  266 (323)
T cd08241         190 DYRDPDLRERVKALTGGRGVDVVYDPVGGDV-FEASLRSLAWG-GRLLVIGFASGEI-PQIPANLLLLKNISVVGVYWGA  266 (323)
T ss_pred             ecCCccHHHHHHHHcCCCCcEEEEECccHHH-HHHHHHhhccC-CEEEEEccCCCCc-CcCCHHHHhhcCcEEEEEeccc
Confidence            87775555557777776 8999999999854 88899999997 9999998643211 1133334556788888876443


Q ss_pred             CCC------CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEE
Q 016660          331 LKA------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  381 (385)
Q Consensus       331 ~~~------~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi  381 (385)
                      +..      .+.+.++++++.++.+.  ++.++.|+++++.++++.+.++.. +|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv  322 (323)
T cd08241         267 YARREPELLRANLAELFDLLAEGKIR--PHVSAVFPLEQAAEALRALADRKATGKVVL  322 (323)
T ss_pred             ccchhHHHHHHHHHHHHHHHHCCCcc--cccceEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence            321      13466788888888654  346788999999999998877665 47775

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=7.4e-31  Score=247.92  Aligned_cols=311  Identities=22%  Similarity=0.304  Sum_probs=243.8

Q ss_pred             eEEEeccCCC--CcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           18 RAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        18 ~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      ||+.+...+.  .+.+.+.+.|.|.+++|+|||.++++|+.|+..+.+.+.. +..|.++|||++|+|+.+|+++.+|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   80 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV   80 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence            4556655543  2777788888889999999999999999999988776532 345778999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      ||+|+...                              ..                   |+|++|+.++.+.++++|+++
T Consensus        81 G~~V~~~~------------------------------~~-------------------~~~~~~~~~~~~~~~~ip~~~  111 (337)
T cd08275          81 GDRVMGLT------------------------------RF-------------------GGYAEVVNVPADQVFPLPDGM  111 (337)
T ss_pred             CCEEEEec------------------------------CC-------------------CeeeeEEEecHHHeEECCCCC
Confidence            99997431                              01                   389999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      ++.+++.+++++.++|+++....+++++++|+|+|+ |.+|++++++|+.. +. .++.. ..+++.+.++++|++.+++
T Consensus       112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~  189 (337)
T cd08275         112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVTHVID  189 (337)
T ss_pred             CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCcEEee
Confidence            999999999999999998878888999999999997 99999999999988 33 33322 2355778888899988888


Q ss_pred             CCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCC--c-------------ccccHHHHh
Q 016660          253 SKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS--Q-------------LSLSSFEVL  317 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~--~-------------~~~~~~~~~  317 (385)
                      .........++..+++++|+++|++|+.. ...++++++++ |+++.+|......  .             ..+....++
T Consensus       190 ~~~~~~~~~~~~~~~~~~d~v~~~~g~~~-~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (337)
T cd08275         190 YRTQDYVEEVKKISPEGVDIVLDALGGED-TRKSYDLLKPM-GRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLI  267 (337)
T ss_pred             CCCCcHHHHHHHHhCCCceEEEECCcHHH-HHHHHHhhccC-cEEEEEeecCCcCcccccccccccccccccccCHHHHh
Confidence            87755555566666558999999999875 78899999997 9999998643211  1             122224556


Q ss_pred             hcCcEEEEeeecCCCCC-----CcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          318 HSGKILMGSLFGGLKAK-----SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       318 ~~~~~i~g~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      .+++++.+.........     ..+.++++++.++.+.+  +.++.|++++++++++.+.+++. +|+++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  337 (337)
T cd08275         268 SENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKP--KIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP  337 (337)
T ss_pred             hcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCC--ceeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            77888888765422111     13567788888886544  36688999999999999987765 4888864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=2.3e-30  Score=242.66  Aligned_cols=295  Identities=23%  Similarity=0.256  Sum_probs=226.1

Q ss_pred             EEEEeecCCCCCCeEEEEEeeeecccccccccccCCC---CCCCCccccCceeEEEEEeCCCCCCCCCCCEEEecCCCCC
Q 016660           30 VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADC  106 (385)
Q Consensus        30 ~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~  106 (385)
                      ++.+.|.|.|.+++|+|++.++++|+.|+..+.|.++   ...+|..+|||++|+|+++|++++++++||+|+.....  
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~--   92 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP--   92 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence            7778899999999999999999999999998877652   12346789999999999999999999999999754210  


Q ss_pred             CCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCcccccccccch
Q 016660          107 TECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV  186 (385)
Q Consensus       107 ~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~  186 (385)
                                               ...                   |+|++|+.++.+.++++|+++++..++.+++.+
T Consensus        93 -------------------------~~~-------------------g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~  128 (319)
T cd08267          93 -------------------------KGG-------------------GALAEYVVAPESGLAKKPEGVSFEEAAALPVAG  128 (319)
T ss_pred             -------------------------CCC-------------------ceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence                                     011                   389999999999999999999999999999999


Q ss_pred             hhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHh
Q 016660          187 STGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDM  265 (385)
Q Consensus       187 ~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~  265 (385)
                      .+||+++.....++++++|+|+|+ |++|++++++|+..|+ +|+++..+ ++.+.++++|++++++.....+.   ...
T Consensus       129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~---~~~  203 (319)
T cd08267         129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTTEDFV---ALT  203 (319)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCCCCcc---hhc
Confidence            999998877777999999999997 9999999999999999 78888754 78888899999888887663332   344


Q ss_pred             hCC-CccEEEEccCCh-HHHHHHHHHhccCCceEEEeccCCCCCcccc---cHHHHhhcCcEEEEeeecCCCCCCcHHHH
Q 016660          266 TDG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGVDQPGSQLSL---SSFEVLHSGKILMGSLFGGLKAKSDIPIL  340 (385)
Q Consensus       266 ~~g-~~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~---~~~~~~~~~~~i~g~~~~~~~~~~~~~~~  340 (385)
                      +.+ ++|+++||+|+. ......+..++++ |+++.+|..........   ....... ...+.......  ..+.+.++
T Consensus       204 ~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~  279 (319)
T cd08267         204 AGGEKYDVIFDAVGNSPFSLYRASLALKPG-GRYVSVGGGPSGLLLVLLLLPLTLGGG-GRRLKFFLAKP--NAEDLEQL  279 (319)
T ss_pred             cCCCCCcEEEECCCchHHHHHHhhhccCCC-CEEEEeccccccccccccccchhhccc-cceEEEEEecC--CHHHHHHH
Confidence            455 899999999953 2234444459996 99999987532222211   1111111 22222222111  14578889


Q ss_pred             HHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016660          341 LKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  381 (385)
Q Consensus       341 ~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~-k~vi  381 (385)
                      +++++++.+.  +++++.|++++++++++.+.++... |+++
T Consensus       280 ~~~l~~~~~~--~~~~~~~~~~~i~~a~~~~~~~~~~~~vvv  319 (319)
T cd08267         280 AELVEEGKLK--PVIDSVYPLEDAPEAYRRLKSGRARGKVVI  319 (319)
T ss_pred             HHHHHCCCee--eeeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence            9999998654  3467899999999999999876543 6653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.97  E-value=1.9e-30  Score=239.26  Aligned_cols=282  Identities=22%  Similarity=0.241  Sum_probs=227.2

Q ss_pred             CeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCC
Q 016660           42 HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS  121 (385)
Q Consensus        42 ~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~  121 (385)
                      +||+|||.++++|+.|++...+.+  ..+|.++|||++|+|+++|+++++|++||+|+...                   
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~--~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~-------------------   59 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLL--PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA-------------------   59 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCC--CCCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence            589999999999999999887764  24578999999999999999999999999997431                   


Q ss_pred             CCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhccCCC
Q 016660          122 AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV  201 (385)
Q Consensus       122 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~  201 (385)
                                                     .|+|++|+.++.+.++++|+++++.+++.+++++.|+|.++.+...+++
T Consensus        60 -------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  108 (293)
T cd05195          60 -------------------------------PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK  108 (293)
T ss_pred             -------------------------------cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence                                           1389999999999999999999999999999999999998877788999


Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC--CCeEEeCCCCCchhHHHHhhCC-CccEEEEcc
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--VTEFVNSKNCGDKSIIIDMTDG-GADYCFECV  277 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg--~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~  277 (385)
                      +++|+|+|+ |.+|++++++|+.+|+ +|+++..++++.+.++++|  ++.+++..+......+.+.+.+ ++|+++|++
T Consensus       109 g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  187 (293)
T cd05195         109 GESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSL  187 (293)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCchhHHHHHHHHhCCCCceEEEeCC
Confidence            999999975 9999999999999999 7888888889999998888  7788887765555557777766 899999999


Q ss_pred             CChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC------CCCcHHHHHHHHHcCCCCC
Q 016660          278 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK------AKSDIPILLKRYMDKELEL  351 (385)
Q Consensus       278 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~~~~~~~~~~g~~~~  351 (385)
                      |+. .+..++++++++ |+++.+|.........+.... +.+++.+.+..+....      ..+.+.+++++++++.+. 
T Consensus       188 ~~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  263 (293)
T cd05195         188 SGE-LLRASWRCLAPF-GRFVEIGKRDILSNSKLGMRP-FLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLK-  263 (293)
T ss_pred             Cch-HHHHHHHhcccC-ceEEEeeccccccCCccchhh-hccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcc-
Confidence            988 599999999997 999999865322112233222 3346666665432211      012466788888888654 


Q ss_pred             CCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016660          352 DKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  381 (385)
Q Consensus       352 ~~~i~~~~~l~~~~~a~~~l~~~~~~-k~vi  381 (385)
                       ++.+..+++++++++++.+.++... |+++
T Consensus       264 -~~~~~~~~~~~~~~a~~~~~~~~~~~~ivv  293 (293)
T cd05195         264 -PLPPTVVPSASEIDAFRLMQSGKHIGKVVL  293 (293)
T ss_pred             -cCCCeeechhhHHHHHHHHhcCCCCceecC
Confidence             4466789999999999999877654 7653

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=99.97  E-value=5.6e-30  Score=235.89  Aligned_cols=277  Identities=21%  Similarity=0.268  Sum_probs=223.1

Q ss_pred             EEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCC
Q 016660           46 VRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF  125 (385)
Q Consensus        46 Vkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~  125 (385)
                      |||.++++|+.|++.+.+.++   .|.++|||++|+|+++|+++++|++||+|+...                       
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~-----------------------   55 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA-----------------------   55 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-----------------------
Confidence            899999999999998887653   367899999999999999999999999997431                       


Q ss_pred             CCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEE
Q 016660          126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV  205 (385)
Q Consensus       126 ~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~V  205 (385)
                                                 .|+|++|+.++.+.++++|+++++.+++.+++.+.|+|.++.+...+.++++|
T Consensus        56 ---------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v  108 (288)
T smart00829       56 ---------------------------PGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV  108 (288)
T ss_pred             ---------------------------CCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence                                       13899999999999999999999999999999999999987777889999999


Q ss_pred             EEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC--CeEEeCCCCCchhHHHHhhCC-CccEEEEccCChH
Q 016660          206 VIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLAS  281 (385)
Q Consensus       206 lI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~  281 (385)
                      +|+|+ |.+|++++++|+..|+ +|+++++++++.+.++++|+  +.++++.+......+.+.+++ ++|+++|++++ .
T Consensus       109 lv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~-~  186 (288)
T smart00829      109 LIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSLAG-E  186 (288)
T ss_pred             EEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCCccHHHHHHHHhCCCCcEEEEeCCCH-H
Confidence            99986 9999999999999999 79999889999999999998  788887775555557777776 89999999996 4


Q ss_pred             HHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC-----CCCcHHHHHHHHHcCCCCCCCcee
Q 016660          282 LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK-----AKSDIPILLKRYMDKELELDKFVT  356 (385)
Q Consensus       282 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~i~  356 (385)
                      ....++++++++ |+++.+|.........++... +.+++.+.+..+....     ..+.+.+++++++++.+.+.  ..
T Consensus       187 ~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  262 (288)
T smart00829      187 FLDASLRCLAPG-GRFVEIGKRDIRDNSQLGMAP-FRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPL--PV  262 (288)
T ss_pred             HHHHHHHhccCC-cEEEEEcCcCCccccccchhh-hcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCc--Cc
Confidence            488899999997 999999864322222333333 3556776665432111     11246677888888876543  45


Q ss_pred             eeeecchHHHHHHHHhcCCe-eEEEE
Q 016660          357 HEMKFEEINSAFDLLIKGKC-LRCVI  381 (385)
Q Consensus       357 ~~~~l~~~~~a~~~l~~~~~-~k~vi  381 (385)
                      +.|++++++++++.+..+.. +|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~ivv  288 (288)
T smart00829      263 TVFPISDVEDAFRYMQQGKHIGKVVL  288 (288)
T ss_pred             eEEcHHHHHHHHHHHhcCCCcceEeC
Confidence            78999999999999987764 36653

Enoylreductase in Polyketide synthases.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.96  E-value=7.5e-28  Score=221.57  Aligned_cols=246  Identities=27%  Similarity=0.420  Sum_probs=198.2

Q ss_pred             CCCccccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceee
Q 016660           69 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH  148 (385)
Q Consensus        69 ~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~  148 (385)
                      .+|.++|||++|+|+++|+++++|++||+|+..                                               
T Consensus        19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~-----------------------------------------------   51 (277)
T cd08255          19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF-----------------------------------------------   51 (277)
T ss_pred             cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-----------------------------------------------
Confidence            478999999999999999999999999999742                                               


Q ss_pred             ccccccceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCE
Q 016660          149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  228 (385)
Q Consensus       149 ~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~  228 (385)
                           +.|++|+.++.+.++++|+++++.+++.+ +.+.|||+++ ...+++++++|||+|+|.+|++++++|+.+|+++
T Consensus        52 -----~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~  124 (277)
T cd08255          52 -----GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGARE  124 (277)
T ss_pred             -----CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Confidence                 16899999999999999999999999888 7899999976 4688999999999998999999999999999944


Q ss_pred             EEEEcCCchHHHHHHHcC-CCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCC
Q 016660          229 IIGVDVISEKFEIGKRFG-VTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG  306 (385)
Q Consensus       229 vi~~~~~~~~~~~~~~lg-~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  306 (385)
                      |+++++++++.++++++| ++.+++..+        ..+.+ ++|++||+++....+..++++++++ |+++.+|.....
T Consensus       125 vi~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~~~~g~~~~~  195 (277)
T cd08255         125 VVGVDPDAARRELAEALGPADPVAADTA--------DEIGGRGADVVIEASGSPSALETALRLLRDR-GRVVLVGWYGLK  195 (277)
T ss_pred             EEEECCCHHHHHHHHHcCCCccccccch--------hhhcCCCCCEEEEccCChHHHHHHHHHhcCC-cEEEEEeccCCC
Confidence            999999999999999999 555554432        12234 8999999999877789999999997 999999875432


Q ss_pred             CcccccHHHHhhcCcEEEEeeecCC---------CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC--
Q 016660          307 SQLSLSSFEVLHSGKILMGSLFGGL---------KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--  375 (385)
Q Consensus       307 ~~~~~~~~~~~~~~~~i~g~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~--  375 (385)
                       . ......+..+.+++.+......         ...+.+.+++++++++.+.  +++.+.|+++++.++++.+.+++  
T Consensus       196 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~  271 (277)
T cd08255         196 -P-LLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLE--ALITHRVPFEDAPEAYRLLFEDPPE  271 (277)
T ss_pred             -c-cccHHHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCcc--ccccCccCHHHHHHHHHHHHcCCcc
Confidence             1 1122334445667777654321         1125688999999999654  34668899999999999998873  


Q ss_pred             eeEEEE
Q 016660          376 CLRCVI  381 (385)
Q Consensus       376 ~~k~vi  381 (385)
                      ..|+++
T Consensus       272 ~~k~~~  277 (277)
T cd08255         272 CLKVVL  277 (277)
T ss_pred             ceeeeC
Confidence            348764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.96  E-value=7.2e-27  Score=204.49  Aligned_cols=294  Identities=20%  Similarity=0.173  Sum_probs=224.6

Q ss_pred             EEeecC-CCCCCeEEEEEeeeecccccccccccCCCCC-CCCcccc----CceeEEEEEeCCCCCCCCCCCEEEecCCCC
Q 016660           32 DEVIVD-PPNSHEVRVRIICTSLCHSDVTFWKMKDFPA-VFPRILG----HEAIGVVESVGENVDGVVEGDVVIPHFLAD  105 (385)
Q Consensus        32 ~~~~~p-~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~-~~p~~~G----~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~  105 (385)
                      .+.+++ ++++++|+||.+|-+..|.....++...+.. -.|..+|    ..++|+|++.  +.+++++||.|..     
T Consensus        27 ~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g-----   99 (343)
T KOG1196|consen   27 TTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWG-----   99 (343)
T ss_pred             eeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEEE-----
Confidence            344433 4689999999999999988766554333221 1233333    2678999995  5578999999942     


Q ss_pred             CCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCc--eEECC--CCCCccc-cc
Q 016660          106 CTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH--VVKVD--PTVPPNR-AC  180 (385)
Q Consensus       106 ~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~--~~~iP--~~l~~~~-aa  180 (385)
                                               ..                      +|.||.++++..  .+++|  .++++.. ..
T Consensus       100 -------------------------~~----------------------gWeeysii~~~~~~~~ki~~~~~~pLs~ylg  132 (343)
T KOG1196|consen  100 -------------------------IV----------------------GWEEYSVITPNDLEHFKIQHPTDVPLSYYLG  132 (343)
T ss_pred             -------------------------ec----------------------cceEEEEecCcchhcccCCCCCccCHhhhhh
Confidence                                     22                      799999997653  44544  3455544 33


Q ss_pred             ccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCC-C
Q 016660          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNC-G  257 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~-~  257 (385)
                      ++..+..|||..+++.+..++|++|+|-|| |++|+++.|+||.+|+ +|+++.-+++|..+++. ||.+.++||+++ +
T Consensus       133 ~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~  211 (343)
T KOG1196|consen  133 LLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKEESD  211 (343)
T ss_pred             ccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccCccC
Confidence            577789999999999999999999999987 9999999999999999 99999999999998774 799999999997 4


Q ss_pred             chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCC---CCCc-ccccHHHHhhcCcEEEEeeecCCCC
Q 016660          258 DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ---PGSQ-LSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       258 ~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~---~~~~-~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      ..+.+++..+.|+|+.||.+|+.. +...+..|+.. ||++.+|+..   .+.+ .--+...++.|++++.|+....+.+
T Consensus       212 ~~~aL~r~~P~GIDiYfeNVGG~~-lDavl~nM~~~-gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d  289 (343)
T KOG1196|consen  212 LSAALKRCFPEGIDIYFENVGGKM-LDAVLLNMNLH-GRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLD  289 (343)
T ss_pred             HHHHHHHhCCCcceEEEeccCcHH-HHHHHHhhhhc-cceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhh
Confidence            444477777779999999999999 99999999996 9999999743   1112 2233456778999999987665542


Q ss_pred             --CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          334 --KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       334 --~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                        .+.+..+..++++|+|+...-+  .-.|+..++||.-|..+.. +|.++.+.
T Consensus       290 ~~~k~ld~l~~~ikegKI~y~edi--~~Glen~P~A~vglf~GkNvGKqiv~va  341 (343)
T KOG1196|consen  290 KYPKFLDFLLPYIKEGKITYVEDI--ADGLENGPSALVGLFHGKNVGKQLVKVA  341 (343)
T ss_pred             hhHHHHHHHHHHHhcCceEEehhH--HHHHhccHHHHHHHhccCcccceEEEee
Confidence              2345667788899988876444  2359999999999888876 59998875

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.95  E-value=1.2e-27  Score=238.10  Aligned_cols=292  Identities=18%  Similarity=0.172  Sum_probs=242.8

Q ss_pred             cEEEEeecC---CCCCCeEEEEEeeeecccccccccccCCCCCCCC-------ccccCceeEEEEEeCCCCCCCCCCCEE
Q 016660           29 LVIDEVIVD---PPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP-------RILGHEAIGVVESVGENVDGVVEGDVV   98 (385)
Q Consensus        29 l~~~~~~~p---~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p-------~~~G~e~~G~V~~vG~~v~~~~~GdrV   98 (385)
                      ++|.+.|..   +..++.=+--|.|+.||.+|+....|..++...|       +++|-||+||          .+-|.||
T Consensus      1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred             eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence            777777765   2367777899999999999999999988654333       6889999997          4669999


Q ss_pred             EecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCccc
Q 016660           99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR  178 (385)
Q Consensus        99 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~  178 (385)
                                                    .|+....                   ++++-+.++.+.+|.+|.+...++
T Consensus      1499 ------------------------------M~mvpAk-------------------sLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 ------------------------------MGMVPAK-------------------SLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred             ------------------------------EEeeehh-------------------hhhhhhhcchhhhhhCCcccchhh
Confidence                                          4444444                   899999999999999999999999


Q ss_pred             ccccccchhhhhhhhhhhccCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeEEeC
Q 016660          179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNS  253 (385)
Q Consensus       179 aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~  253 (385)
                      |++.||.+.||||||..+...++|++|||++ +|++|++||.+|.+.|+ +|+.+.-+.+|.+++.+    |-..++-|+
T Consensus      1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NS 1608 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANS 1608 (2376)
T ss_pred             cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhhhhhccccc
Confidence            9999999999999999999999999999995 69999999999999999 88888889999988764    446778899


Q ss_pred             CCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      ++.+++..++..|+| |+|+|++....+. ++.+++||+.+ |||..+|...-...-++-+. ++.||.+++|....+.-
T Consensus      1609 RdtsFEq~vl~~T~GrGVdlVLNSLaeEk-LQASiRCLa~~-GRFLEIGKfDLSqNspLGMa-vfLkNvsfHGiLLDsvm 1685 (2376)
T KOG1202|consen 1609 RDTSFEQHVLWHTKGRGVDLVLNSLAEEK-LQASIRCLALH-GRFLEIGKFDLSQNSPLGMA-VFLKNVSFHGILLDSVM 1685 (2376)
T ss_pred             ccccHHHHHHHHhcCCCeeeehhhhhHHH-HHHHHHHHHhc-CeeeeecceecccCCcchhh-hhhcccceeeeehhhhh
Confidence            998888889999999 9999999988777 99999999997 99999997643333344443 45679999998765543


Q ss_pred             C--CCcHHHHHHHHHcCCC--CCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          333 A--KSDIPILLKRYMDKEL--ELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       333 ~--~~~~~~~~~~~~~g~~--~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      .  .+.+.++.+++++|.-  .+.|+.+++|+-+++++||++|.+++. +|+||++
T Consensus      1686 ege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIGKVvikv 1741 (2376)
T KOG1202|consen 1686 EGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIGKVVIKV 1741 (2376)
T ss_pred             cCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccCccceEEEEE
Confidence            2  2356777888877633  356778999999999999999999887 5999975

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.90  E-value=3.7e-24  Score=168.42  Aligned_cols=108  Identities=35%  Similarity=0.541  Sum_probs=95.7

Q ss_pred             CCeEEEEEeeeecccccccccccC-CCCCCCCccccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCC
Q 016660           41 SHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNL  119 (385)
Q Consensus        41 ~~eVlVkv~a~~i~~~D~~~~~g~-~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~  119 (385)
                      |+||||||.++|||++|++++++. .....+|.++|||++|+|+++|+++++|++||||++.+...|+.|.+|+.+..++
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            689999999999999999999984 4457889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660          120 CSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus       120 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      |.....   +|...+|                   +|+||++++++++++|
T Consensus        81 c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEV---LGLGLDG-------------------GFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEE---TTTSSTC-------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCE---eEcCCCC-------------------cccCeEEEehHHEEEC
Confidence            977665   5666666                   9999999999999985

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.77  E-value=7.8e-18  Score=136.77  Aligned_cols=129  Identities=28%  Similarity=0.462  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHh
Q 016660          212 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACC  290 (385)
Q Consensus       212 ~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l  290 (385)
                      ++|++++|+|++.|+ +|++++++++|+++++++|+++++++++.+..+.+++.+++ ++|+||||+|.+..++.+++++
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l   79 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLL   79 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHE
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHh
Confidence            589999999999996 99999999999999999999999999997778889999998 9999999999888899999999


Q ss_pred             ccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHc
Q 016660          291 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD  346 (385)
Q Consensus       291 ~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~  346 (385)
                      +++ |+++.+|... ....+++...++.+++++.|++...   .++++++++++++
T Consensus        80 ~~~-G~~v~vg~~~-~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~la~  130 (130)
T PF00107_consen   80 RPG-GRIVVVGVYG-GDPISFNLMNLMFKEITIRGSWGGS---PEDFQEALQLLAQ  130 (130)
T ss_dssp             EEE-EEEEEESSTS-TSEEEEEHHHHHHTTEEEEEESSGG---HHHHHHHHHHHH-
T ss_pred             ccC-CEEEEEEccC-CCCCCCCHHHHHhCCcEEEEEccCC---HHHHHHHHHHhcC
Confidence            997 9999999875 5678899999999999999997555   4788888888763

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.52  E-value=3.9e-13  Score=128.03  Aligned_cols=175  Identities=14%  Similarity=0.156  Sum_probs=138.4

Q ss_pred             hhhhhhhcc-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC
Q 016660          190 VGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       190 ~~al~~~~~-~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g  268 (385)
                      |.++.+..+ ..+|++|+|+|+|.+|+.+++.|+.+|+ +|++++.++.|.+.++.+|++.+ +.     .+.+     .
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~-~~-----~e~v-----~  256 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVM-TM-----EEAV-----K  256 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEc-cH-----HHHH-----c
Confidence            344444444 4689999999999999999999999999 89999999999999999998533 21     1111     2


Q ss_pred             CccEEEEccCChHHHHHH-HHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCCcHH--HHHHHHH
Q 016660          269 GADYCFECVGLASLVQEA-YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIP--ILLKRYM  345 (385)
Q Consensus       269 ~~d~vid~~g~~~~~~~~-~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~--~~~~~~~  345 (385)
                      ++|+||+++|....+... +.+++++ |.++.+|..    ..+++...+..+++++.++.....  ..+++  +.+++++
T Consensus       257 ~aDVVI~atG~~~~i~~~~l~~mk~G-gilvnvG~~----~~eId~~~L~~~el~i~g~~~~~~--~~~~~~g~aI~LLa  329 (413)
T cd00401         257 EGDIFVTTTGNKDIITGEHFEQMKDG-AIVCNIGHF----DVEIDVKGLKENAVEVVNIKPQVD--RYELPDGRRIILLA  329 (413)
T ss_pred             CCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEeCCC----CCccCHHHHHhhccEEEEccCCcc--eEEcCCcchhhhhh
Confidence            589999999999888865 9999997 999999853    356777778888999988853221  22455  7899999


Q ss_pred             cCCC-CCCCceeee-----eecc-hHHHHHHHHhcCCee--EEEEEe
Q 016660          346 DKEL-ELDKFVTHE-----MKFE-EINSAFDLLIKGKCL--RCVIWM  383 (385)
Q Consensus       346 ~g~~-~~~~~i~~~-----~~l~-~~~~a~~~l~~~~~~--k~vi~~  383 (385)
                      +|++ ++...++|.     ++|+ ++.+++..+.++...  |+++.+
T Consensus       330 ~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p  376 (413)
T cd00401         330 EGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLP  376 (413)
T ss_pred             CcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECC
Confidence            9998 888888888     8999 999999999877643  777654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.38  E-value=6.5e-12  Score=122.68  Aligned_cols=152  Identities=20%  Similarity=0.252  Sum_probs=113.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCC-------------chhHHHH
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCG-------------DKSIIID  264 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~-------------~~~~i~~  264 (385)
                      ..++++|+|+|+|.+|+++++.|+.+|+ +|++++.++++++.++++|++.+ ++..+.+             .....++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            4689999999999999999999999999 89999999999999999999854 6654321             1111222


Q ss_pred             h-hC--CCccEEEEccCCh-----HHH-HHHHHHhccCCceEEEeccCCCC-CcccccHHHHhh-cCcEEEEeeecCCCC
Q 016660          265 M-TD--GGADYCFECVGLA-----SLV-QEAYACCRKGWGKTIVLGVDQPG-SQLSLSSFEVLH-SGKILMGSLFGGLKA  333 (385)
Q Consensus       265 ~-~~--g~~d~vid~~g~~-----~~~-~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~~~~~~-~~~~i~g~~~~~~~~  333 (385)
                      . .+  +++|+||+|++.+     ..+ +++++.++++ |.++.+|...+. -..+.+...++. +++++.|...  +. 
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG-gvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n--~P-  316 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG-SVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTD--LP-  316 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC-CEEEEEccCCCCCcccccCccceEeECCEEEEEeCC--Cc-
Confidence            2 33  2699999999963     354 8999999997 999999974322 134454455665 7999998752  22 


Q ss_pred             CCcHH-HHHHHHHcCCCCCCCcee
Q 016660          334 KSDIP-ILLKRYMDKELELDKFVT  356 (385)
Q Consensus       334 ~~~~~-~~~~~~~~g~~~~~~~i~  356 (385)
                       ..+. .+.+++.++.+++.++++
T Consensus       317 -~~~p~~As~lla~~~i~l~~lIt  339 (509)
T PRK09424        317 -SRLPTQSSQLYGTNLVNLLKLLC  339 (509)
T ss_pred             -hhHHHHHHHHHHhCCccHHHHhc
Confidence             3444 589999999887776665

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.26  E-value=2.2e-12  Score=104.20  Aligned_cols=120  Identities=21%  Similarity=0.299  Sum_probs=77.2

Q ss_pred             cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC--ChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcE
Q 016660          245 FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG--LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKI  322 (385)
Q Consensus       245 lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g--~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  322 (385)
                      |||++++||++.++      ...+++|+|||++|  +...+..+++++ ++ |+++.++.       .........+...
T Consensus         1 LGAd~vidy~~~~~------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~-G~~v~i~~-------~~~~~~~~~~~~~   65 (127)
T PF13602_consen    1 LGADEVIDYRDTDF------AGPGGVDVVIDTVGQTGESLLDASRKLL-PG-GRVVSIGG-------DLPSFARRLKGRS   65 (127)
T ss_dssp             CT-SEEEETTCSHH------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EE-EEEEEE-S-------HHHHHHHHHHCHH
T ss_pred             CCcCEEecCCCccc------cCCCCceEEEECCCCccHHHHHHHHHHC-CC-CEEEEECC-------cccchhhhhcccc
Confidence            79999999986332      22348999999999  666457777888 96 99999973       1111111122333


Q ss_pred             EEEeeecC-CC---CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEE
Q 016660          323 LMGSLFGG-LK---AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  381 (385)
Q Consensus       323 i~g~~~~~-~~---~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi  381 (385)
                      +.+..+.. ..   ..+.++++.+++++|++.+.  +.++|||+++.+|++.+++++. +|+||
T Consensus        66 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~~~--i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   66 IRYSFLFSVDPNAIRAEALEELAELVAEGKLKPP--IDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             CEEECCC-H--HHHHHHHHHHHHHHHHTTSS-----EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             eEEEEEEecCCCchHHHHHHHHHHHHHCCCeEEe--eccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence            33333221 11   23459999999999966654  8899999999999999999886 59986

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.63  E-value=4.9e-07  Score=82.91  Aligned_cols=161  Identities=20%  Similarity=0.279  Sum_probs=100.7

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHHc----CCCeEEeCCCCCchhHHHH--hhCC
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSIIID--MTDG  268 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~l----g~~~vv~~~~~~~~~~i~~--~~~g  268 (385)
                      .+.++++++||.+|+|. |..++++++..|.. +|++++.+++.++.+++.    +.+.+-.... +    +..  +.++
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~-d----~~~l~~~~~  145 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLG-E----IEALPVADN  145 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEc-c----hhhCCCCCC
Confidence            35688999999999988 88888888887753 799999999998888763    4332211111 1    222  2234


Q ss_pred             CccEEEEcc------CChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHH
Q 016660          269 GADYCFECV------GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLK  342 (385)
Q Consensus       269 ~~d~vid~~------g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~  342 (385)
                      .||+|+...      .....++++.+.|+++ |++++.+..... .++    ..+.+...+.+......   ....++.+
T Consensus       146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~~~~~-~~~----~~~~~~~~~~~~~~~~~---~~~~e~~~  216 (272)
T PRK11873        146 SVDVIISNCVINLSPDKERVFKEAFRVLKPG-GRFAISDVVLRG-ELP----EEIRNDAELYAGCVAGA---LQEEEYLA  216 (272)
T ss_pred             ceeEEEEcCcccCCCCHHHHHHHHHHHcCCC-cEEEEEEeeccC-CCC----HHHHHhHHHHhccccCC---CCHHHHHH
Confidence            799998543      2345689999999997 999987654322 111    11122222222211111   24556666


Q ss_pred             HHHc-CCCCCCCceeeeeecchHHHHHHHH
Q 016660          343 RYMD-KELELDKFVTHEMKFEEINSAFDLL  371 (385)
Q Consensus       343 ~~~~-g~~~~~~~i~~~~~l~~~~~a~~~l  371 (385)
                      ++++ |-..........++++++.++++.+
T Consensus       217 ~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~  246 (272)
T PRK11873        217 MLAEAGFVDITIQPKREYRIPDAREFLEDW  246 (272)
T ss_pred             HHHHCCCCceEEEeccceecccHHHHHHHh
Confidence            6665 4333333345667899999999988

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=98.47  E-value=1.7e-06  Score=79.08  Aligned_cols=139  Identities=10%  Similarity=0.085  Sum_probs=95.1

Q ss_pred             ceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhcc---CCCCCEEEEEcC-CHHHHHHHHHHH-HcCCCEE
Q 016660          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN---VEVGSTVVIFGL-GSIGLAVAEGAR-LCGATRI  229 (385)
Q Consensus       155 ~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~---~~~~~~VlI~G~-g~vG~~ai~la~-~~G~~~v  229 (385)
                      .|.+|.++..+..+.-  ... ..-+++-.-+.|+|. +.+...   .-..+.|+|.+| +-.++.++.+++ ..+..++
T Consensus        90 ~YN~Y~r~~~d~~y~~--~~e-~~~~LlrPLf~Tsfl-l~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~  165 (314)
T PF11017_consen   90 IYNQYLRVSADPAYDP--ERE-DWQMLLRPLFITSFL-LDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKV  165 (314)
T ss_pred             hhhceeecCCCcccCc--chh-HHHHHHHHHHHHHHH-HHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceE
Confidence            6778888876655421  111 222333335667775 333221   234466777777 888988888888 5555589


Q ss_pred             EEEcCCchHHHHHHHcCC-CeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCC
Q 016660          230 IGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       230 i~~~~~~~~~~~~~~lg~-~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      |.++ |..+....+++|. +.|+.|++      +..+.....-+++|+.|.......+.+.++...-..+.+|.+.
T Consensus       166 vglT-S~~N~~Fve~lg~Yd~V~~Yd~------i~~l~~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th  234 (314)
T PF11017_consen  166 VGLT-SARNVAFVESLGCYDEVLTYDD------IDSLDAPQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATH  234 (314)
T ss_pred             EEEe-cCcchhhhhccCCceEEeehhh------hhhccCCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccC
Confidence            9995 6777789999998 68888887      4444444667899999999988899999988634567777654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.44  E-value=1.6e-06  Score=84.96  Aligned_cols=105  Identities=20%  Similarity=0.239  Sum_probs=79.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCC-------------CchhHHHHh
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNC-------------GDKSIIIDM  265 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~-------------~~~~~i~~~  265 (385)
                      .++++|+|+|+|.+|+++++.|+.+|+ .|++++.++++++.++++|++.+ ++..+.             ++.+..+++
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            467999999999999999999999999 79999999999999999998763 333210             011112222


Q ss_pred             hC---CCccEEEEcc---CChH---HHHHHHHHhccCCceEEEeccCCCC
Q 016660          266 TD---GGADYCFECV---GLAS---LVQEAYACCRKGWGKTIVLGVDQPG  306 (385)
Q Consensus       266 ~~---g~~d~vid~~---g~~~---~~~~~~~~l~~~~G~~v~~g~~~~~  306 (385)
                      ..   .++|+||+++   |.+.   .-++.++.++++ +.+|.++...+.
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIVDlA~d~GG  289 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIVDLAAEQGG  289 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEEEeeeCCCC
Confidence            32   2799999999   5432   357889999997 999988875433

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.37  E-value=1.6e-08  Score=97.96  Aligned_cols=161  Identities=17%  Similarity=0.182  Sum_probs=106.2

Q ss_pred             cccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeecccc
Q 016660           73 ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVS  152 (385)
Q Consensus        73 ~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~  152 (385)
                      .-|.|+++.+.+|+++++.     +|++.+.+ ||+|.+|    ++.|.....   .|...++                 
T Consensus        89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~l~~-----------------  138 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKVLER-----------------  138 (417)
T ss_pred             cCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHHHHH-----------------
Confidence            4589999999999998876     66666666 9999999    444543333   4444444                 


Q ss_pred             ccceeeeEeeccCceEECCCCCCcccccccccchhhhhhh---hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEE
Q 016660          153 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA---AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRI  229 (385)
Q Consensus       153 ~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a---l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~v  229 (385)
                        .|++++.+.. .+.. -.+++       ..+.+.++.+   +....+..++.+|+|+|+|.+|.++++.++..|+.+|
T Consensus       139 --lf~~a~~~~k-~vr~-~t~i~-------~~~vSv~~~Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V  207 (417)
T TIGR01035       139 --LFQKAFSVGK-RVRT-ETDIS-------AGAVSISSAAVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKI  207 (417)
T ss_pred             --HHHHHHHHhh-hhhh-hcCCC-------CCCcCHHHHHHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEE
Confidence              8999988875 3332 01111       1111122222   1233344678999999999999999999999997689


Q ss_pred             EEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHH
Q 016660          230 IGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASL  282 (385)
Q Consensus       230 i~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~  282 (385)
                      ++++++.++.+ +++++|.. .+...+      ..+.. .++|+||+|++.+..
T Consensus       208 ~v~~rs~~ra~~la~~~g~~-~i~~~~------l~~~l-~~aDvVi~aT~s~~~  253 (417)
T TIGR01035       208 LIANRTYERAEDLAKELGGE-AVKFED------LEEYL-AEADIVISSTGAPHP  253 (417)
T ss_pred             EEEeCCHHHHHHHHHHcCCe-EeeHHH------HHHHH-hhCCEEEECCCCCCc
Confidence            99999888754 66777764 332211      12221 269999999987753

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.30  E-value=5.9e-06  Score=79.44  Aligned_cols=102  Identities=22%  Similarity=0.231  Sum_probs=77.9

Q ss_pred             hhhhhhhccCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC
Q 016660          190 VGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       190 ~~al~~~~~~~-~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g  268 (385)
                      |.++.+..++. .|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+. +.+     .    .+.. .
T Consensus       199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~~-----l----~eal-~  266 (425)
T PRK05476        199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VMT-----M----EEAA-E  266 (425)
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ecC-----H----HHHH-h
Confidence            44443333444 89999999999999999999999999 899999988887776666764 321     1    1111 2


Q ss_pred             CccEEEEccCChHHHH-HHHHHhccCCceEEEeccCC
Q 016660          269 GADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       269 ~~d~vid~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~  304 (385)
                      ++|+||+++|....+. ..+..++++ +.++.+|...
T Consensus       267 ~aDVVI~aTG~~~vI~~~~~~~mK~G-ailiNvG~~d  302 (425)
T PRK05476        267 LGDIFVTATGNKDVITAEHMEAMKDG-AILANIGHFD  302 (425)
T ss_pred             CCCEEEECCCCHHHHHHHHHhcCCCC-CEEEEcCCCC
Confidence            6899999999988676 678889996 8888888753

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.14  E-value=1.7e-05  Score=75.81  Aligned_cols=92  Identities=22%  Similarity=0.241  Sum_probs=73.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      ...|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|+. +++.     .+.+     .+.|++|++.|
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~-v~~l-----eeal-----~~aDVVItaTG  259 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR-VMTM-----EEAA-----KIGDIFITATG  259 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE-eCCH-----HHHH-----hcCCEEEECCC
Confidence            3689999999999999999999999999 899998888887777777763 3221     1111     25799999999


Q ss_pred             ChHHHHH-HHHHhccCCceEEEeccC
Q 016660          279 LASLVQE-AYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       279 ~~~~~~~-~~~~l~~~~G~~v~~g~~  303 (385)
                      ....+.. .+..++++ +.++.+|..
T Consensus       260 ~~~vI~~~~~~~mK~G-ailiN~G~~  284 (406)
T TIGR00936       260 NKDVIRGEHFENMKDG-AIVANIGHF  284 (406)
T ss_pred             CHHHHHHHHHhcCCCC-cEEEEECCC
Confidence            9887764 88889996 888888864

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.13  E-value=5.9e-05  Score=69.83  Aligned_cols=111  Identities=18%  Similarity=0.248  Sum_probs=82.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .+.+|+|+|.|.+|+.+++.++.+|+ +|+++++++++.+.++++|++.+ ...+      +.+... ++|+||++++..
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~~~------l~~~l~-~aDiVI~t~p~~  221 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HLSE------LAEEVG-KIDIIFNTIPAL  221 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cHHH------HHHHhC-CCCEEEECCChh
Confidence            68999999999999999999999999 99999999888888888887533 2111      222222 599999999876


Q ss_pred             HHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEE
Q 016660          281 SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  325 (385)
Q Consensus       281 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  325 (385)
                      ..-+..++.++++ +.++.++...+...+  .  ..-.++++..+
T Consensus       222 ~i~~~~l~~~~~g-~vIIDla~~pggtd~--~--~a~~~Gv~~~~  261 (296)
T PRK08306        222 VLTKEVLSKMPPE-ALIIDLASKPGGTDF--E--YAEKRGIKALL  261 (296)
T ss_pred             hhhHHHHHcCCCC-cEEEEEccCCCCcCe--e--ehhhCCeEEEE
Confidence            5456778889997 899988876544332  2  22234555554

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.12  E-value=6.5e-05  Score=67.93  Aligned_cols=128  Identities=23%  Similarity=0.282  Sum_probs=83.6

Q ss_pred             ceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhh-ccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 016660          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (385)
Q Consensus       155 ~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~-~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~  233 (385)
                      +|.+|.. +...++.+++++++..+. -+.   |.. ++... ..+.++++||-+|+|. |.+++.+++ .|..+|++++
T Consensus        78 ~~~~~~~-~~~~~i~i~p~~afgtg~-h~t---t~~-~l~~l~~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giD  149 (250)
T PRK00517         78 SWEDPPD-PDEINIELDPGMAFGTGT-HPT---TRL-CLEALEKLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVD  149 (250)
T ss_pred             CCcCCCC-CCeEEEEECCCCccCCCC-CHH---HHH-HHHHHHhhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEE
Confidence            4666644 667889999998877654 221   111 11111 1256889999999987 888876555 5776799999


Q ss_pred             CCchHHHHHHHc----CCCeEEeCCCCCchhHHHHhhCC--CccEEEEccCCh---HHHHHHHHHhccCCceEEEeccC
Q 016660          234 VISEKFEIGKRF----GVTEFVNSKNCGDKSIIIDMTDG--GADYCFECVGLA---SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       234 ~~~~~~~~~~~l----g~~~vv~~~~~~~~~~i~~~~~g--~~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      .++...+.+++.    +....+.            +..+  .||+|+......   ..++.+.+.|+++ |.+++.|..
T Consensus       150 is~~~l~~A~~n~~~~~~~~~~~------------~~~~~~~fD~Vvani~~~~~~~l~~~~~~~Lkpg-G~lilsgi~  215 (250)
T PRK00517        150 IDPQAVEAARENAELNGVELNVY------------LPQGDLKADVIVANILANPLLELAPDLARLLKPG-GRLILSGIL  215 (250)
T ss_pred             CCHHHHHHHHHHHHHcCCCceEE------------EccCCCCcCEEEEcCcHHHHHHHHHHHHHhcCCC-cEEEEEECc
Confidence            999888877652    2211011            1112  589998655443   3356788899997 999988754

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.10  E-value=8.6e-06  Score=76.03  Aligned_cols=108  Identities=21%  Similarity=0.262  Sum_probs=79.5

Q ss_pred             CceEECCCCCCcccccccccchhhhhhhhhhhccC----CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHH-
Q 016660          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANV----EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF-  239 (385)
Q Consensus       165 ~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~----~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~-  239 (385)
                      ...+++|+.++.+.++... +.+.++.++. .+..    .++.+|+|+|+|.+|..+++.++..|...|+++++++++. 
T Consensus       139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~-~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~  216 (311)
T cd05213         139 QKAIKVGKRVRTETGISRG-AVSISSAAVE-LAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE  216 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCC-CcCHHHHHHH-HHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence            3677889999888887765 5566666543 2222    4789999999999999999999988877899999988765 


Q ss_pred             HHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHH
Q 016660          240 EIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASL  282 (385)
Q Consensus       240 ~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~  282 (385)
                      ++++++|+. +++..+      +.+.. ..+|+||.+++.+..
T Consensus       217 ~la~~~g~~-~~~~~~------~~~~l-~~aDvVi~at~~~~~  251 (311)
T cd05213         217 ELAKELGGN-AVPLDE------LLELL-NEADVVISATGAPHY  251 (311)
T ss_pred             HHHHHcCCe-EEeHHH------HHHHH-hcCCEEEECCCCCch
Confidence            677888873 333221      12211 248999999998874

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PLN02494 adenosylhomocysteinase

Probab=97.96  E-value=7.5e-05  Score=72.20  Aligned_cols=101  Identities=18%  Similarity=0.223  Sum_probs=78.3

Q ss_pred             hhhhhhhccC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC
Q 016660          190 VGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       190 ~~al~~~~~~-~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g  268 (385)
                      +.++.+..++ -.|++|+|+|.|.+|...++.++.+|+ +|++++.++.+...+...|+.. ++     ..+.+     .
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~v-v~-----leEal-----~  308 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQV-LT-----LEDVV-----S  308 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCee-cc-----HHHHH-----h
Confidence            3344454443 679999999999999999999999999 8999998888777777777652 21     11111     1


Q ss_pred             CccEEEEccCChHHH-HHHHHHhccCCceEEEeccC
Q 016660          269 GADYCFECVGLASLV-QEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       269 ~~d~vid~~g~~~~~-~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ..|++|++.|....+ ...+..++++ +.++.+|..
T Consensus       309 ~ADVVI~tTGt~~vI~~e~L~~MK~G-AiLiNvGr~  343 (477)
T PLN02494        309 EADIFVTTTGNKDIIMVDHMRKMKNN-AIVCNIGHF  343 (477)
T ss_pred             hCCEEEECCCCccchHHHHHhcCCCC-CEEEEcCCC
Confidence            479999999988754 7899999997 999999874

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.81  E-value=1.2e-05  Score=81.51  Aligned_cols=80  Identities=19%  Similarity=0.220  Sum_probs=59.8

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC---------------------chHHHHHHHcCCCeEEeCCC-
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---------------------SEKFEIGKRFGVTEFVNSKN-  255 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~---------------------~~~~~~~~~lg~~~vv~~~~-  255 (385)
                      ....+++|+|+|+|++|+++++.++..|+ +|++++..                     +.+++.++++|++..++... 
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            36789999999999999999999999999 78888742                     35667788999887666433 


Q ss_pred             CCchhHHHHhhCCCccEEEEccCChH
Q 016660          256 CGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       256 ~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      .+..  ... ...++|+||+++|...
T Consensus       212 ~~~~--~~~-~~~~~D~Vi~AtG~~~  234 (564)
T PRK12771        212 EDIT--LEQ-LEGEFDAVFVAIGAQL  234 (564)
T ss_pred             CcCC--HHH-HHhhCCEEEEeeCCCC
Confidence            1111  111 2236999999999764

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00022  Score=61.43  Aligned_cols=121  Identities=19%  Similarity=0.247  Sum_probs=86.7

Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHH----HHHcC
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFG  246 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~----~~~lg  246 (385)
                      +..++....-+++-+...|.  +.+...++++++||=+|+|. |..++-+|+..|  +|+.+++.++-.+.    ++.+|
T Consensus        44 d~~lpi~~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg  118 (209)
T COG2518          44 DRALPIGCGQTISAPHMVAR--MLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG  118 (209)
T ss_pred             CCcccCCCCceecCcHHHHH--HHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC
Confidence            44455555555665555554  55778899999999999987 999999999998  89999988874444    45688


Q ss_pred             CCeEE-eCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          247 VTEFV-NSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       247 ~~~vv-~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ...|. ...+ ..    ..+... .||.++-..+.+..-+..++.|+++ |+++.--.
T Consensus       119 ~~nV~v~~gD-G~----~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~g-Grlv~PvG  170 (209)
T COG2518         119 YENVTVRHGD-GS----KGWPEEAPYDRIIVTAAAPEVPEALLDQLKPG-GRLVIPVG  170 (209)
T ss_pred             CCceEEEECC-cc----cCCCCCCCcCEEEEeeccCCCCHHHHHhcccC-CEEEEEEc
Confidence            75442 2222 11    233333 7999998888887567899999997 99876543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.68  E-value=0.00025  Score=65.49  Aligned_cols=97  Identities=20%  Similarity=0.242  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc----CCC-eEEeCCCCCchhHHHHhhCCCccEE
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT-EFVNSKNCGDKSIIIDMTDGGADYC  273 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~-~vv~~~~~~~~~~i~~~~~g~~d~v  273 (385)
                      ..++++||-+|+|. |.+++.+++ .|..+|++++.++...+.+++.    +.. .+..... +    ......++||+|
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~-~----~~~~~~~~fDlV  229 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI-Y----LEQPIEGKADVI  229 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-c----cccccCCCceEE
Confidence            45789999999988 888877766 5766999999998877766542    221 1111111 0    112223479999


Q ss_pred             EEccCCh---HHHHHHHHHhccCCceEEEeccC
Q 016660          274 FECVGLA---SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       274 id~~g~~---~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +......   ..+..+.+.++++ |.++..|..
T Consensus       230 van~~~~~l~~ll~~~~~~Lkpg-G~li~sgi~  261 (288)
T TIGR00406       230 VANILAEVIKELYPQFSRLVKPG-GWLILSGIL  261 (288)
T ss_pred             EEecCHHHHHHHHHHHHHHcCCC-cEEEEEeCc
Confidence            8755433   3456788999997 999887753

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.68  E-value=0.00093  Score=61.52  Aligned_cols=96  Identities=20%  Similarity=0.271  Sum_probs=71.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .+.+++|+|.|.+|..+++.++.+|+ +|++.++++++.+.+.++|...+ ...+      +.+.. .++|+||++++..
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~~-~~~~------l~~~l-~~aDiVint~P~~  220 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIPF-PLNK------LEEKV-AEIDIVINTIPAL  220 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeee-cHHH------HHHHh-ccCCEEEECCChH
Confidence            57899999999999999999999999 89999999888777777775422 1111      22222 2689999999765


Q ss_pred             HHHHHHHHHhccCCceEEEeccCCCC
Q 016660          281 SLVQEAYACCRKGWGKTIVLGVDQPG  306 (385)
Q Consensus       281 ~~~~~~~~~l~~~~G~~v~~g~~~~~  306 (385)
                      ..-...++.++++ ..++.++..+..
T Consensus       221 ii~~~~l~~~k~~-aliIDlas~Pg~  245 (287)
T TIGR02853       221 VLTADVLSKLPKH-AVIIDLASKPGG  245 (287)
T ss_pred             HhCHHHHhcCCCC-eEEEEeCcCCCC
Confidence            4334567788886 788888875433

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.67  E-value=0.00054  Score=65.48  Aligned_cols=98  Identities=23%  Similarity=0.229  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC-
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG-  278 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g-  278 (385)
                      ++.+|+|+|+|.+|+.+++.|+.+|+ +|+++++++++.+.+. .++........+   ...+.+... .+|+||++++ 
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~---~~~l~~~l~-~aDvVI~a~~~  240 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSN---AYEIEDAVK-RADLLIGAVLI  240 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCC---HHHHHHHHc-cCCEEEEcccc
Confidence            34569999999999999999999999 7999999888877665 455432222221   122233322 6899999983 


Q ss_pred             --C--hHH-HHHHHHHhccCCceEEEeccCC
Q 016660          279 --L--ASL-VQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       279 --~--~~~-~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                        .  +.. -++.++.++++ +.++.++...
T Consensus       241 ~g~~~p~lit~~~l~~mk~g-~vIvDva~d~  270 (370)
T TIGR00518       241 PGAKAPKLVSNSLVAQMKPG-AVIVDVAIDQ  270 (370)
T ss_pred             CCCCCCcCcCHHHHhcCCCC-CEEEEEecCC
Confidence              2  221 26778889997 9999888654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08324 short chain dehydrogenase; Validated

Probab=97.66  E-value=0.00031  Score=72.87  Aligned_cols=136  Identities=18%  Similarity=0.231  Sum_probs=86.2

Q ss_pred             ceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc
Q 016660          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (385)
Q Consensus       155 ~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~  233 (385)
                      ++++|..+++..++.+ +..+.+++..-...          .....+++++||+|+ |++|..+++.+...|+ +|++++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~  453 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD  453 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence            5677887887777777 66666665421100          122346789999996 9999999999999999 899999


Q ss_pred             CCchHHHHHH-HcCC--C---eEEeCCCCCchhH-HHHhh--CCCccEEEEccCC-------------------------
Q 016660          234 VISEKFEIGK-RFGV--T---EFVNSKNCGDKSI-IIDMT--DGGADYCFECVGL-------------------------  279 (385)
Q Consensus       234 ~~~~~~~~~~-~lg~--~---~vv~~~~~~~~~~-i~~~~--~g~~d~vid~~g~-------------------------  279 (385)
                      ++.++.+.+. .++.  .   ...|..+...... +....  .+++|++|+++|.                         
T Consensus       454 r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~  533 (681)
T PRK08324        454 LDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGH  533 (681)
T ss_pred             CCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHH
Confidence            8887765443 3443  1   1234333211111 22211  2479999999982                         


Q ss_pred             hHHHHHHHHHhcc---CCceEEEeccC
Q 016660          280 ASLVQEAYACCRK---GWGKTIVLGVD  303 (385)
Q Consensus       280 ~~~~~~~~~~l~~---~~G~~v~~g~~  303 (385)
                      ...++.+++.+++   + |+++.++..
T Consensus       534 ~~l~~~~~~~l~~~~~~-g~iV~vsS~  559 (681)
T PRK08324        534 FLVAREAVRIMKAQGLG-GSIVFIASK  559 (681)
T ss_pred             HHHHHHHHHHHHhcCCC-cEEEEECCc
Confidence            1223455666655   5 789988764

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.62  E-value=9.7e-05  Score=72.04  Aligned_cols=161  Identities=18%  Similarity=0.164  Sum_probs=97.5

Q ss_pred             cccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeecccc
Q 016660           73 ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVS  152 (385)
Q Consensus        73 ~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~  152 (385)
                      .-|||+++.+.+|+++++..-+|+     +.+ |++|...    +..|.....   .|...++                 
T Consensus        91 ~~g~ea~~hl~~V~~GldS~V~GE-----~qI-lgQvk~a----~~~a~~~g~---~g~~l~~-----------------  140 (423)
T PRK00045         91 HEGEEAVRHLFRVASGLDSMVLGE-----PQI-LGQVKDA----YALAQEAGT---VGTILNR-----------------  140 (423)
T ss_pred             cCCHHHHHHHHHHHhhhhhhhcCC-----hHH-HHHHHHH----HHHHHHcCC---chHHHHH-----------------
Confidence            459999999999999987744444     333 5555422    111211111   1212222                 


Q ss_pred             ccceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhc---cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEE
Q 016660          153 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRI  229 (385)
Q Consensus       153 ~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~---~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~v  229 (385)
                        .|++.+.++        ..+..+.+ ....+.+.++.++....   .-.++.+|+|+|+|.+|.++++.++..|+++|
T Consensus       141 --lf~~a~~~~--------k~v~~~t~-i~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V  209 (423)
T PRK00045        141 --LFQKAFSVA--------KRVRTETG-IGAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKI  209 (423)
T ss_pred             --HHHHHHHHH--------hhHhhhcC-CCCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeE
Confidence              555544443        33332222 22224455555542221   12578999999999999999999999998789


Q ss_pred             EEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHH
Q 016660          230 IGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASL  282 (385)
Q Consensus       230 i~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~  282 (385)
                      +++.++.++.+ +++.+|.+ +++..+      ..+.. .++|+||+|+|.+..
T Consensus       210 ~v~~r~~~ra~~la~~~g~~-~~~~~~------~~~~l-~~aDvVI~aT~s~~~  255 (423)
T PRK00045        210 TVANRTLERAEELAEEFGGE-AIPLDE------LPEAL-AEADIVISSTGAPHP  255 (423)
T ss_pred             EEEeCCHHHHHHHHHHcCCc-EeeHHH------HHHHh-ccCCEEEECCCCCCc
Confidence            99999988855 77778864 333211      12211 268999999998653

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.53  E-value=0.00029  Score=57.24  Aligned_cols=76  Identities=24%  Similarity=0.250  Sum_probs=56.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCC--eEEeCCCCCchhHHHHhhCCCccEEEE
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT--EFVNSKNCGDKSIIIDMTDGGADYCFE  275 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~--~vv~~~~~~~~~~i~~~~~g~~d~vid  275 (385)
                      --++.+++|+|+|++|.+++..+...|+++|+++.++.+|.+.+ ++++..  .++.+.+      +.... ..+|+||+
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~------~~~~~-~~~DivI~   81 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED------LEEAL-QEADIVIN   81 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG------HCHHH-HTESEEEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH------HHHHH-hhCCeEEE
Confidence            34689999999999999999999999998899999998887754 455332  3444444      11111 15999999


Q ss_pred             ccCChH
Q 016660          276 CVGLAS  281 (385)
Q Consensus       276 ~~g~~~  281 (385)
                      +++.+.
T Consensus        82 aT~~~~   87 (135)
T PF01488_consen   82 ATPSGM   87 (135)
T ss_dssp             -SSTTS
T ss_pred             ecCCCC
Confidence            998774

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.51  E-value=0.00074  Score=65.60  Aligned_cols=92  Identities=22%  Similarity=0.224  Sum_probs=72.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      .-.|.+|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+.. ++     .    .++. ...|+|+.+.|
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~-~~-----l----eell-~~ADIVI~atG  318 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQV-VT-----L----EDVV-ETADIFVTATG  318 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCcee-cc-----H----HHHH-hcCCEEEECCC
Confidence            4579999999999999999999999999 8999988777765555566542 21     1    1111 25899999999


Q ss_pred             ChHHHH-HHHHHhccCCceEEEeccC
Q 016660          279 LASLVQ-EAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       279 ~~~~~~-~~~~~l~~~~G~~v~~g~~  303 (385)
                      ....+. +.+..|+++ +.++.+|..
T Consensus       319 t~~iI~~e~~~~MKpG-AiLINvGr~  343 (476)
T PTZ00075        319 NKDIITLEHMRRMKNN-AIVGNIGHF  343 (476)
T ss_pred             cccccCHHHHhccCCC-cEEEEcCCC
Confidence            887664 899999997 999999864

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.40  E-value=0.0025  Score=55.45  Aligned_cols=102  Identities=20%  Similarity=0.385  Sum_probs=69.7

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHH----HcC-CCeEEeCCCCCchhHHHHhhCC
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGK----RFG-VTEFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~lg-~~~vv~~~~~~~~~~i~~~~~g  268 (385)
                      ....+.++++||-+|+|. |.+++.+++..+. .+|++++.+++..+.++    .+| .+.+..... +....+. ...+
T Consensus        34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~-d~~~~l~-~~~~  110 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKG-EAPEILF-TINE  110 (198)
T ss_pred             HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEe-chhhhHh-hcCC
Confidence            456788999999999988 9999999987642 38999999998887654    456 333221111 1111121 2234


Q ss_pred             CccEEEEccCC---hHHHHHHHHHhccCCceEEEe
Q 016660          269 GADYCFECVGL---ASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       269 ~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      .+|.||...+.   ...++.+.+.|+++ |+++..
T Consensus       111 ~~D~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~  144 (198)
T PRK00377        111 KFDRIFIGGGSEKLKEIISASWEIIKKG-GRIVID  144 (198)
T ss_pred             CCCEEEECCCcccHHHHHHHHHHHcCCC-cEEEEE
Confidence            79999985543   34577888999997 998853

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.16  E-value=0.003  Score=60.71  Aligned_cols=113  Identities=18%  Similarity=0.217  Sum_probs=76.2

Q ss_pred             ccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchh
Q 016660          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS  260 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~  260 (385)
                      .+..+-...+..+.+..+++++++||-+|+|. |.++..+++..|+ +|++++.+++..+.+++.....-+.....+   
T Consensus       147 ~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~-G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~~D---  221 (383)
T PRK11705        147 TLEEAQEAKLDLICRKLQLKPGMRVLDIGCGW-GGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRLQD---  221 (383)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCc-cHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEECc---
Confidence            34444444455556777889999999999854 7778888988898 899999999999988764321111111101   


Q ss_pred             HHHHhhCCCccEEEEc-----cCC---hHHHHHHHHHhccCCceEEEec
Q 016660          261 IIIDMTDGGADYCFEC-----VGL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       261 ~i~~~~~g~~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                       ...+ .+.||.|+..     +|.   ...++.+.+.|+++ |.+++..
T Consensus       222 -~~~l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG-G~lvl~~  267 (383)
T PRK11705        222 -YRDL-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD-GLFLLHT  267 (383)
T ss_pred             -hhhc-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence             1222 3479988743     333   34578899999997 9988754

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.15  E-value=0.0053  Score=52.66  Aligned_cols=109  Identities=17%  Similarity=0.178  Sum_probs=74.0

Q ss_pred             CCCEEEEEc-C-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCC-eEEeCCCCCchh----HHHHhhCCCccE
Q 016660          201 VGSTVVIFG-L-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFVNSKNCGDKS----IIIDMTDGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G-~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~-~vv~~~~~~~~~----~i~~~~~g~~d~  272 (385)
                      ....|||.| + |++|.+.+.-....|+ .|+++.+.-++...+. ++|.. .=+|..+++...    .+++..+|..|+
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~   84 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL   84 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEE
Confidence            456799997 4 9999999888889999 9999999988887666 77753 224444422211    155666678999


Q ss_pred             EEEccCCh----------HHHH----------------HHHHHhccCCceEEEeccCCCCCcccc
Q 016660          273 CFECVGLA----------SLVQ----------------EAYACCRKGWGKTIVLGVDQPGSQLSL  311 (385)
Q Consensus       273 vid~~g~~----------~~~~----------------~~~~~l~~~~G~~v~~g~~~~~~~~~~  311 (385)
                      .++.+|-+          .+++                ....+++.. |++|.+|...+-.++++
T Consensus        85 L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaK-GtIVnvgSl~~~vpfpf  148 (289)
T KOG1209|consen   85 LYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAK-GTIVNVGSLAGVVPFPF  148 (289)
T ss_pred             EEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHcc-ceEEEecceeEEeccch
Confidence            99977753          1111                224456775 99999987654333443

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.11  E-value=0.0088  Score=50.56  Aligned_cols=103  Identities=21%  Similarity=0.293  Sum_probs=70.2

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHHHhhCC-C
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIIIDMTDG-G  269 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~~~~g-~  269 (385)
                      ...++++++.++=+|+|. |-.+++++...-..+|+++++++++++..+    +||.+.+.....  +.+..  +.+- .
T Consensus        28 s~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g--~Ap~~--L~~~~~  102 (187)
T COG2242          28 SKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG--DAPEA--LPDLPS  102 (187)
T ss_pred             HhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec--cchHh--hcCCCC
Confidence            356789999877778755 666778885444449999999999887654    689875432222  22221  1122 5


Q ss_pred             ccEEEEccCC--hHHHHHHHHHhccCCceEEEeccC
Q 016660          270 ADYCFECVGL--ASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       270 ~d~vid~~g~--~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +|.+|=--|.  +..++.++..|+++ |++|.-..+
T Consensus       103 ~daiFIGGg~~i~~ile~~~~~l~~g-grlV~nait  137 (187)
T COG2242         103 PDAIFIGGGGNIEEILEAAWERLKPG-GRLVANAIT  137 (187)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHcCcC-CeEEEEeec
Confidence            9999855443  24478999999997 999876654

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.05  E-value=0.009  Score=50.90  Aligned_cols=94  Identities=19%  Similarity=0.231  Sum_probs=63.9

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC----
Q 016660          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL----  279 (385)
Q Consensus       205 VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~----  279 (385)
                      |+|+|+ |.+|...++.+...|+ +|+++.+++++.+.  ..+++.+ ..+- .....+.+... ++|.||+++|.    
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~~~-~~d~-~d~~~~~~al~-~~d~vi~~~~~~~~~   74 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVEII-QGDL-FDPDSVKAALK-GADAVIHAAGPPPKD   74 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEEEE-ESCT-TCHHHHHHHHT-TSSEEEECCHSTTTH
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--ccccccc-eeee-hhhhhhhhhhh-hcchhhhhhhhhccc
Confidence            789998 9999999999999998 89999999998777  3444433 2222 22233444443 69999999984    


Q ss_pred             hHHHHHHHHHhccC-CceEEEeccCC
Q 016660          280 ASLVQEAYACCRKG-WGKTIVLGVDQ  304 (385)
Q Consensus       280 ~~~~~~~~~~l~~~-~G~~v~~g~~~  304 (385)
                      .......++.++.. -.+++.++...
T Consensus        75 ~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   75 VDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             HHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             ccccccccccccccccccceeeeccc
Confidence            23355566665443 13777776543

...

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.0072  Score=55.21  Aligned_cols=76  Identities=21%  Similarity=0.296  Sum_probs=53.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhH-HHHhh--CCCccEEEEcc
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSI-IIDMT--DGGADYCFECV  277 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~-i~~~~--~g~~d~vid~~  277 (385)
                      .++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+.+...+ .|..+...... +....  .+++|++|++.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a   80 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA   80 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            46899987 9999999999998999 89999888887776666565433 45444222222 22222  23699999999


Q ss_pred             CC
Q 016660          278 GL  279 (385)
Q Consensus       278 g~  279 (385)
                      |.
T Consensus        81 g~   82 (274)
T PRK05693         81 GY   82 (274)
T ss_pred             CC
Confidence            83

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.01  E-value=0.0032  Score=55.42  Aligned_cols=78  Identities=21%  Similarity=0.281  Sum_probs=57.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCC----CeEEeCCCCCc-hhHHHHhhCC--Ccc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV----TEFVNSKNCGD-KSIIIDMTDG--GAD  271 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~----~~vv~~~~~~~-~~~i~~~~~g--~~d  271 (385)
                      +++.++|.|| +++|.+.++.+...|+ +|+.+.+..++++.+ .+++.    ...+|..+... ...+..+...  .+|
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iD   83 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRID   83 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCccc
Confidence            4577899998 9999999999999999 899999999988865 46772    23456555322 2224444444  599


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++++..|.
T Consensus        84 iLvNNAGl   91 (246)
T COG4221          84 ILVNNAGL   91 (246)
T ss_pred             EEEecCCC
Confidence            99998885

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.01  E-value=0.012  Score=46.39  Aligned_cols=101  Identities=21%  Similarity=0.330  Sum_probs=67.5

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCe--EEeCCCCCchhHHHHhhCC
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE--FVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~--vv~~~~~~~~~~i~~~~~g  268 (385)
                      ....+.++++||-+|+|. |..+..+++..+..+|++++.++...+.++    .++...  ++..+- ..   ......+
T Consensus        13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~   87 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA-PE---ALEDSLP   87 (124)
T ss_pred             HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc-cc---cChhhcC
Confidence            445667788999999877 888999998765448999999988777654    344432  222211 00   0111123


Q ss_pred             CccEEEEccCC---hHHHHHHHHHhccCCceEEEec
Q 016660          269 GADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       269 ~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .+|+|+-..+.   ...++.+.+.|+++ |.++...
T Consensus        88 ~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~  122 (124)
T TIGR02469        88 EPDRVFIGGSGGLLQEILEAIWRRLRPG-GRIVLNA  122 (124)
T ss_pred             CCCEEEECCcchhHHHHHHHHHHHcCCC-CEEEEEe
Confidence            79999875433   23578899999997 9988653

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK14967 putative methyltransferase; Provisional

Probab=97.01  E-value=0.033  Score=49.34  Aligned_cols=98  Identities=19%  Similarity=0.173  Sum_probs=63.2

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhCCCcc
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTDGGAD  271 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~g~~d  271 (385)
                      ...+.++++||-.|+|. |.+++.+++. +..+|++++.+++..+.+++    .+....+...+  ...   .+..+.||
T Consensus        31 ~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d--~~~---~~~~~~fD  103 (223)
T PRK14967         31 AEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGD--WAR---AVEFRPFD  103 (223)
T ss_pred             hcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECc--hhh---hccCCCee
Confidence            34577889999999987 8888888875 55589999999887775543    34332222122  111   11223799


Q ss_pred             EEEEccCC---------------------------hHHHHHHHHHhccCCceEEEec
Q 016660          272 YCFECVGL---------------------------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       272 ~vid~~g~---------------------------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +|+...+.                           ...+..+.+.|+++ |+++++-
T Consensus       104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~~  159 (223)
T PRK14967        104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLVQ  159 (223)
T ss_pred             EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence            99864210                           11245677889997 9988653

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.00  E-value=0.0034  Score=53.54  Aligned_cols=78  Identities=21%  Similarity=0.265  Sum_probs=58.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC---CeEEeCCCCCchhHHHHhh-CC--CccEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV---TEFVNSKNCGDKSIIIDMT-DG--GADYC  273 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~---~~vv~~~~~~~~~~i~~~~-~g--~~d~v  273 (385)
                      .|.+|||.|+ +++|+..++-...+|= +||.+.+++++++.+++.-.   ..+.|..+.+....+..+. +.  ..+++
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvl   82 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVL   82 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchhee
Confidence            4789999975 9999999999999997 89999999999998886442   3566666644444433333 23  57999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      ++++|-
T Consensus        83 iNNAGI   88 (245)
T COG3967          83 INNAGI   88 (245)
T ss_pred             eecccc
Confidence            998874

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.99  E-value=0.0094  Score=55.70  Aligned_cols=103  Identities=21%  Similarity=0.305  Sum_probs=71.6

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHHHhhC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~~~~  267 (385)
                      +.+...++++++||.+|+|. |..++.+++..+. ..|++++.+++..+.++    ++|.+.+..... +....+..  .
T Consensus        72 ll~~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g-D~~~~~~~--~  147 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG-DGYYGVPE--F  147 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC-Chhhcccc--c
Confidence            33556788999999999974 9999999998764 26999999988766554    366654432222 11110111  1


Q ss_pred             CCccEEEEccCChHHHHHHHHHhccCCceEEEe
Q 016660          268 GGADYCFECVGLASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       268 g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      +.||+|+.+.+.........+.++++ |+++..
T Consensus       148 ~~fD~Ii~~~g~~~ip~~~~~~Lkpg-G~Lvv~  179 (322)
T PRK13943        148 APYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP  179 (322)
T ss_pred             CCccEEEECCchHHhHHHHHHhcCCC-CEEEEE
Confidence            26999999888776566788999997 987763

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.94  E-value=0.019  Score=51.75  Aligned_cols=80  Identities=24%  Similarity=0.263  Sum_probs=57.1

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-----cCCC-eE--EeCCCCCchhHHHH-hh-C
Q 016660          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVT-EF--VNSKNCGDKSIIID-MT-D  267 (385)
Q Consensus       199 ~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-----lg~~-~v--v~~~~~~~~~~i~~-~~-~  267 (385)
                      ...+.++||.|| +++|...+..+...|+ +++.+.++.+|++.+.+     .|.. ++  +|..+.+....+.. +. .
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~   81 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER   81 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence            346789999998 9999999999999999 89999999999886542     2322 12  35545333333332 22 2


Q ss_pred             C-CccEEEEccCC
Q 016660          268 G-GADYCFECVGL  279 (385)
Q Consensus       268 g-~~d~vid~~g~  279 (385)
                      + .+|+.++++|.
T Consensus        82 ~~~IdvLVNNAG~   94 (265)
T COG0300          82 GGPIDVLVNNAGF   94 (265)
T ss_pred             CCcccEEEECCCc
Confidence            2 69999999986

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.92  E-value=0.017  Score=51.42  Aligned_cols=101  Identities=21%  Similarity=0.187  Sum_probs=64.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHc---CCCeEE--eCCCCCchhH-HHHhh--CCCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF---GVTEFV--NSKNCGDKSI-IIDMT--DGGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l---g~~~vv--~~~~~~~~~~-i~~~~--~g~~  270 (385)
                      ++++|||.|+ |.+|..+++.+...|+ +|+.+++++++.+.+ +++   +..+.+  |..+...... +....  -+++
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   82 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI   82 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4679999997 9999999999999999 899998888776554 222   222332  2222111111 11111  1357


Q ss_pred             cEEEEccCCh-----------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          271 DYCFECVGLA-----------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       271 d~vid~~g~~-----------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      |.++.+.+..                       ..++..+++++++ |+++.++..
T Consensus        83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~  137 (238)
T PRK05786         83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEG-SSIVLVSSM  137 (238)
T ss_pred             CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CEEEEEecc
Confidence            9999888742                       1144556677776 899988864

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0061  Score=57.48  Aligned_cols=78  Identities=27%  Similarity=0.354  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeEEeCCCCCchhHHHHhh------CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSIIIDMT------DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~~~~------~g~  269 (385)
                      ++.++||+|+ |++|...++.+...|+ +|+.+++++++++.+    ++.|.+..+..-+....+.+.++.      .++
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            5678999997 9999999999999999 788898888776533    345654322111212222222221      247


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        85 iD~lVnnAG~   94 (330)
T PRK06139         85 IDVWVNNVGV   94 (330)
T ss_pred             CCEEEECCCc
Confidence            9999999984

>PRK05993 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0062  Score=55.82  Aligned_cols=78  Identities=17%  Similarity=0.215  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhH-HHH---hhCCCccEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSI-IID---MTDGGADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~-i~~---~~~g~~d~vi  274 (385)
                      .+.+|||+|+ |++|...++.+...|+ +|+++++++++.+.+.+.+...+ .|..+...... +..   ...+.+|++|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li   81 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF   81 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence            3568999997 9999999999888999 89999998888877766665433 34444222111 222   2234789999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      +++|.
T Consensus        82 ~~Ag~   86 (277)
T PRK05993         82 NNGAY   86 (277)
T ss_pred             ECCCc
Confidence            98863

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.84  E-value=0.022  Score=50.04  Aligned_cols=100  Identities=17%  Similarity=0.267  Sum_probs=68.7

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHH----cCCCe--EEeCCCCCchhHHHHh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSIIIDM  265 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~~~--vv~~~~~~~~~~i~~~  265 (385)
                      +.....++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++    +|...  ++..+...      .+
T Consensus        68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~------~~  140 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL------GY  140 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc------CC
Confidence            44566789999999999876 7778888887753 289999999887776653    45432  22222100      11


Q ss_pred             hC-CCccEEEEccCChHHHHHHHHHhccCCceEEEe
Q 016660          266 TD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       266 ~~-g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      .. +.||+|+-........+...+.|+++ |+++..
T Consensus       141 ~~~~~fD~I~~~~~~~~~~~~l~~~Lkpg-G~lvi~  175 (212)
T PRK13942        141 EENAPYDRIYVTAAGPDIPKPLIEQLKDG-GIMVIP  175 (212)
T ss_pred             CcCCCcCEEEECCCcccchHHHHHhhCCC-cEEEEE
Confidence            12 37999976555555567889999997 998775

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.84  E-value=0.023  Score=50.90  Aligned_cols=100  Identities=15%  Similarity=0.121  Sum_probs=59.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch-HHHH----HHHcCCC-eE--EeCCCCCchhH-HHHhhC--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFEI----GKRFGVT-EF--VNSKNCGDKSI-IIDMTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~-~~~~----~~~lg~~-~v--v~~~~~~~~~~-i~~~~~--g  268 (385)
                      ++.++||+|+ |.+|...+..+...|+ +|+++.++.+ +.+.    ++..+.. ..  .|..+...... +.....  +
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG   83 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            4678999997 9999999999888999 7888776543 3222    2223332 11  23333211111 222111  3


Q ss_pred             CccEEEEccCCh-------------------HHHHHHHHHhccCCceEEEecc
Q 016660          269 GADYCFECVGLA-------------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       269 ~~d~vid~~g~~-------------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ++|++|.+.|..                   ..++.+.+.+..+ |+++.++.
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~-~~iv~isS  135 (248)
T PRK07806         84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAG-SRVVFVTS  135 (248)
T ss_pred             CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCC-ceEEEEeC
Confidence            689999887642                   2245555666665 88888765

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.82  E-value=0.01  Score=45.98  Aligned_cols=92  Identities=24%  Similarity=0.353  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCCchHHHHHHHc----CC-CeE-EeCCCCCchhHHHHhh-CCCccE
Q 016660          201 VGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRF----GV-TEF-VNSKNCGDKSIIIDMT-DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~-~~G~~~vi~~~~~~~~~~~~~~l----g~-~~v-v~~~~~~~~~~i~~~~-~g~~d~  272 (385)
                      |+.+||-+|+|. |.+++.+++ ..+. +|++++.+++..+.+++.    +. +++ +-..+  . .  .... .++||+
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d--~-~--~~~~~~~~~D~   73 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQGD--A-E--FDPDFLEPFDL   73 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESC--C-H--GGTTTSSCEEE
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECc--c-c--cCcccCCCCCE
Confidence            678999999876 778888888 5677 899999999988877652    22 222 22222  2 1  1222 227999


Q ss_pred             EEEcc-CC---h------HHHHHHHHHhccCCceEEEe
Q 016660          273 CFECV-GL---A------SLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       273 vid~~-g~---~------~~~~~~~~~l~~~~G~~v~~  300 (385)
                      |+... ..   .      ..++.+.+.|+++ |+++.-
T Consensus        74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~lvi~  110 (112)
T PF12847_consen   74 VICSGFTLHFLLPLDERRRVLERIRRLLKPG-GRLVIN  110 (112)
T ss_dssp             EEECSGSGGGCCHHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEECCCccccccchhHHHHHHHHHHHhcCCC-cEEEEE
Confidence            99877 21   1      2378899999997 988753

...

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.79  E-value=0.017  Score=54.94  Aligned_cols=97  Identities=15%  Similarity=0.158  Sum_probs=72.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC---C-CeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG---V-TEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg---~-~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      .+|||+|+|.+|..+++.+-+.|-..|++++++.++.+.+....   . ...+|-.+  .. .+.++.. ++|+||++.+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d--~~-al~~li~-~~d~VIn~~p   77 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD--VD-ALVALIK-DFDLVINAAP   77 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC--hH-HHHHHHh-cCCEEEEeCC
Confidence            46899999999999999988888448999999988888876654   2 23455444  22 2444444 3599999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      .....+.+-.|++.+ -.++..+...
T Consensus        78 ~~~~~~i~ka~i~~g-v~yvDts~~~  102 (389)
T COG1748          78 PFVDLTILKACIKTG-VDYVDTSYYE  102 (389)
T ss_pred             chhhHHHHHHHHHhC-CCEEEcccCC
Confidence            988777666778885 7788887654

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.77  E-value=0.016  Score=50.70  Aligned_cols=101  Identities=15%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHH----HcCCC---eEEeCCCCCchhHHHH
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGK----RFGVT---EFVNSKNCGDKSIIID  264 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~----~lg~~---~vv~~~~~~~~~~i~~  264 (385)
                      +.+...++++++||=+|+|. |..++.+++..+ ..+|++++.+++-.+.++    ..+..   .++..+-...   +. 
T Consensus        64 ~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~---~~-  138 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG---LE-  138 (205)
T ss_pred             HHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC---Cc-
Confidence            44556778899999999866 777788888764 228999999988766554    34432   2222221000   00 


Q ss_pred             hhCCCccEEEEccCChHHHHHHHHHhccCCceEEEe
Q 016660          265 MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       265 ~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                       ..+.||.|+-........+++.+.|+++ |+++..
T Consensus       139 -~~~~fD~Ii~~~~~~~~~~~l~~~L~~g-G~lvi~  172 (205)
T PRK13944        139 -KHAPFDAIIVTAAASTIPSALVRQLKDG-GVLVIP  172 (205)
T ss_pred             -cCCCccEEEEccCcchhhHHHHHhcCcC-cEEEEE
Confidence             1237999987766666567888999997 998764

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.76  E-value=0.017  Score=49.72  Aligned_cols=100  Identities=18%  Similarity=0.149  Sum_probs=60.7

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCC-CccEEE
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDG-GADYCF  274 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g-~~d~vi  274 (385)
                      ..++++++||.+|+|.-++......+..+..+|++++.++.+    ...++..+ .|..+......+.+..++ ++|+|+
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~  103 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM  103 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence            456899999999987755433333334343489999998764    11233322 233332222224444445 799999


Q ss_pred             E-cc----CC------------hHHHHHHHHHhccCCceEEEec
Q 016660          275 E-CV----GL------------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       275 d-~~----g~------------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      . ..    |.            ...++.+.++|+++ |+++...
T Consensus       104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~  146 (188)
T TIGR00438       104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKV  146 (188)
T ss_pred             cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEE
Confidence            4 32    21            34577889999997 9988754

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.72  E-value=0.029  Score=50.21  Aligned_cols=78  Identities=19%  Similarity=0.213  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCC-eEE--eCCCCCchhHHHH-hh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSIIID-MT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~vv--~~~~~~~~~~i~~-~~--~g~  269 (385)
                      ++.++||+|+ |++|...+..+...|+ +|+++++++++.+..    ++.+.. .++  |..+......+.+ ..  -++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG   84 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4688999997 9999999999999999 788888777655433    223432 222  3333111111111 11  146


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|.++|.
T Consensus        85 id~vi~~ag~   94 (250)
T PRK12939         85 LDGLVNNAGI   94 (250)
T ss_pred             CCEEEECCCC
Confidence            9999999985

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.70  E-value=0.0098  Score=57.64  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=55.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      --.+.+|||+|+|.+|.+++..+...|++.++++.++.++.+. +.+++...++.+.+      +..... .+|+||.|+
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~------l~~~l~-~aDiVI~aT  250 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSE------LPQLIK-KADIIIAAV  250 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHH------HHHHhc-cCCEEEECc
Confidence            3467899999999999999999999998889999999877554 44555222332221      222222 589999999


Q ss_pred             CChHH
Q 016660          278 GLASL  282 (385)
Q Consensus       278 g~~~~  282 (385)
                      +.++.
T Consensus       251 ~a~~~  255 (414)
T PRK13940        251 NVLEY  255 (414)
T ss_pred             CCCCe
Confidence            98864

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.69  E-value=0.029  Score=56.11  Aligned_cols=105  Identities=13%  Similarity=0.123  Sum_probs=66.7

Q ss_pred             hhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH---------cCC-----CeE--EeCCCCC
Q 016660          195 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---------FGV-----TEF--VNSKNCG  257 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~---------lg~-----~~v--v~~~~~~  257 (385)
                      ...+.+.+.+|||.|+ |.+|..+++.+...|+ +|+++.++.++.+.+.+         .|.     ..+  .|..+  
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD--  149 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK--  149 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC--
Confidence            4556778999999997 9999999999988999 88888888877654321         121     112  23322  


Q ss_pred             chhHHHHhhCCCccEEEEccCChH---------------HHHHHHHHhcc-CCceEEEeccCC
Q 016660          258 DKSIIIDMTDGGADYCFECVGLAS---------------LVQEAYACCRK-GWGKTIVLGVDQ  304 (385)
Q Consensus       258 ~~~~i~~~~~g~~d~vid~~g~~~---------------~~~~~~~~l~~-~~G~~v~~g~~~  304 (385)
                       ...+.+.. +++|+||+++|...               ....+++.+.. +.+++|+++...
T Consensus       150 -~esI~~aL-ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig  210 (576)
T PLN03209        150 -PDQIGPAL-GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG  210 (576)
T ss_pred             -HHHHHHHh-cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence             22244333 36999999988531               12233343332 226899887643

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.032  Score=52.76  Aligned_cols=78  Identities=18%  Similarity=0.119  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeE---EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v---v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+    ++.|....   .|..+...... +....  -++
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~   85 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP   85 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            4678999997 9999999999988999 888888887765533    23454322   23333211111 11111  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        86 iD~lInnAg~   95 (334)
T PRK07109         86 IDTWVNNAMV   95 (334)
T ss_pred             CCEEEECCCc
Confidence            9999999884

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.63  E-value=0.0065  Score=53.12  Aligned_cols=101  Identities=20%  Similarity=0.301  Sum_probs=67.8

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHH----HcCCCeE-EeCCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGK----RFGVTEF-VNSKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~----~lg~~~v-v~~~~~~~~~~i~~~~  266 (385)
                      +.+...++++++||-+|+|. |..++-+++..|.. +|+.++..++-.+.++    .++.+.| +...+  ..   ..+.
T Consensus        64 ~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd--g~---~g~~  137 (209)
T PF01135_consen   64 MLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD--GS---EGWP  137 (209)
T ss_dssp             HHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES---GG---GTTG
T ss_pred             HHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc--hh---hccc
Confidence            55677899999999999876 88999999988743 6999998877555443    4566533 22222  11   1111


Q ss_pred             C-CCccEEEEccCChHHHHHHHHHhccCCceEEEe
Q 016660          267 D-GGADYCFECVGLASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       267 ~-g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      . +.||.|+-..+.+..-...++.|+.+ |++|.-
T Consensus       138 ~~apfD~I~v~~a~~~ip~~l~~qL~~g-GrLV~p  171 (209)
T PF01135_consen  138 EEAPFDRIIVTAAVPEIPEALLEQLKPG-GRLVAP  171 (209)
T ss_dssp             GG-SEEEEEESSBBSS--HHHHHTEEEE-EEEEEE
T ss_pred             cCCCcCEEEEeeccchHHHHHHHhcCCC-cEEEEE
Confidence            2 27999998888777567889999997 998873

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.61  E-value=0.039  Score=49.99  Aligned_cols=78  Identities=21%  Similarity=0.236  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCe-E--EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTE-F--VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+.++++.++.+. .++++... +  .|..+...... +....  -+.+|+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   83 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI   83 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4678999987 9999999999988999 89999888775443 34455321 2  23333111111 22211  136899


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|++.|.
T Consensus        84 lv~~ag~   90 (261)
T PRK08265         84 LVNLACT   90 (261)
T ss_pred             EEECCCC
Confidence            9998874

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.04  Score=49.69  Aligned_cols=78  Identities=18%  Similarity=0.150  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH---cCCC-eE--EeCCCCCchhH-HHHhhC--CCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVT-EF--VNSKNCGDKSI-IIDMTD--GGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~---lg~~-~v--v~~~~~~~~~~-i~~~~~--g~~  270 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+.+++++++.+..++   .+.. ..  .|..+...... +.....  +++
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI   84 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            4678999997 9999999988888999 67778777776544443   3432 12  23332111111 222211  368


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|.++|.
T Consensus        85 d~vi~~ag~   93 (258)
T PRK08628         85 DGLVNNAGV   93 (258)
T ss_pred             CEEEECCcc
Confidence            999999984

>PRK12742 oxidoreductase; Provisional

Probab=96.56  E-value=0.043  Score=48.73  Aligned_cols=98  Identities=24%  Similarity=0.350  Sum_probs=61.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHH-HHHHcCCCeE-EeCCCCCchhHHHHhhC--CCccEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFE-IGKRFGVTEF-VNSKNCGDKSIIIDMTD--GGADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~-~~~~lg~~~v-v~~~~~~~~~~i~~~~~--g~~d~vi  274 (385)
                      ++.+|||+|+ |++|...++.+...|+ +|+.+.+ ++++.+ +..++++..+ .|..+   ...+.+...  +.+|++|
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~---~~~~~~~~~~~~~id~li   80 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSAD---RDAVIDVVRKSGALDILV   80 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCC---HHHHHHHHHHhCCCcEEE
Confidence            4678999997 9999999999999999 6766643 444443 3345565432 23322   222333222  3689999


Q ss_pred             EccCChH-------------------------HHHHHHHHhccCCceEEEeccC
Q 016660          275 ECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       275 d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +++|...                         ....++..++.+ |+++.++..
T Consensus        81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-g~iv~isS~  133 (237)
T PRK12742         81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEG-GRIIIIGSV  133 (237)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcC-CeEEEEecc
Confidence            9987521                         013444556665 899988764

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.55  E-value=0.0084  Score=51.14  Aligned_cols=91  Identities=29%  Similarity=0.300  Sum_probs=61.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      --.+.+|.|+|.|.+|...+++++.+|+ +|++.+++.+........+..    +.+  ..+ +..    ..|+|+.+.+
T Consensus        33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~----~~~--l~e-ll~----~aDiv~~~~p  100 (178)
T PF02826_consen   33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVE----YVS--LDE-LLA----QADIVSLHLP  100 (178)
T ss_dssp             -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEE----ESS--HHH-HHH----H-SEEEE-SS
T ss_pred             ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhcccccce----eee--hhh-hcc----hhhhhhhhhc
Confidence            4568999999999999999999999999 999999888776645555542    112  211 111    2688887776


Q ss_pred             ChH-H----HHHHHHHhccCCceEEEecc
Q 016660          279 LAS-L----VQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       279 ~~~-~----~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ... +    =.+.+..++++ ..+|.++-
T Consensus       101 lt~~T~~li~~~~l~~mk~g-a~lvN~aR  128 (178)
T PF02826_consen  101 LTPETRGLINAEFLAKMKPG-AVLVNVAR  128 (178)
T ss_dssp             SSTTTTTSBSHHHHHTSTTT-EEEEESSS
T ss_pred             cccccceeeeeeeeeccccc-eEEEeccc
Confidence            321 1    14677888886 77777653

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.51  E-value=0.014  Score=58.15  Aligned_cols=75  Identities=21%  Similarity=0.235  Sum_probs=55.4

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      .+.++++|+|+|.|.+|++++++++..|+ +|++++..+++.+.++++|+.. +....  ....+     ..+|+||.+.
T Consensus         8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~-~~~~~--~~~~l-----~~~D~VV~Sp   78 (488)
T PRK03369          8 PLLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVAT-VSTSD--AVQQI-----ADYALVVTSP   78 (488)
T ss_pred             cccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEE-EcCcc--hHhHh-----hcCCEEEECC
Confidence            35678899999999999999999999999 8999997767666677778743 32221  11111     1479999988


Q ss_pred             CChH
Q 016660          278 GLAS  281 (385)
Q Consensus       278 g~~~  281 (385)
                      |-+.
T Consensus        79 Gi~~   82 (488)
T PRK03369         79 GFRP   82 (488)
T ss_pred             CCCC
Confidence            8753

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.50  E-value=0.027  Score=47.41  Aligned_cols=97  Identities=20%  Similarity=0.241  Sum_probs=63.2

Q ss_pred             ccccccchhhhhhhhhhhccCCCCCEEEEEcCCH-HHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCC
Q 016660          179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  257 (385)
Q Consensus       179 aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~-vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~  257 (385)
                      ....||...++...+.....--.+.+|||+|+|. +|..++..++..|+ +|+++.++.+.                   
T Consensus        21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~-------------------   80 (168)
T cd01080          21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKN-------------------   80 (168)
T ss_pred             CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchh-------------------
Confidence            3445654444444333333346889999999986 59989999999999 78888765211                   


Q ss_pred             chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          258 DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       258 ~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                          +.+... .+|+||.+++.++.+..  +.++++ -.++.++..
T Consensus        81 ----l~~~l~-~aDiVIsat~~~~ii~~--~~~~~~-~viIDla~p  118 (168)
T cd01080          81 ----LKEHTK-QADIVIVAVGKPGLVKG--DMVKPG-AVVIDVGIN  118 (168)
T ss_pred             ----HHHHHh-hCCEEEEcCCCCceecH--HHccCC-eEEEEccCC
Confidence                111111 48999999999874433  346664 566777754

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=96.50  E-value=0.0083  Score=55.23  Aligned_cols=135  Identities=22%  Similarity=0.298  Sum_probs=72.9

Q ss_pred             ceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhh-ccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 016660          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (385)
Q Consensus       155 ~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~-~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~  233 (385)
                      .|.+|-.-+...++.+.+++.+...    ....|... +... .-..++++||=+|+|. |.+++..+| +|+++|++++
T Consensus       119 ~w~~~~~~~~~~~I~idPg~AFGTG----~H~TT~lc-l~~l~~~~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~D  191 (295)
T PF06325_consen  119 SWEEYPEPPDEIVIEIDPGMAFGTG----HHPTTRLC-LELLEKYVKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAID  191 (295)
T ss_dssp             TT----SSTTSEEEEESTTSSS-SS----HCHHHHHH-HHHHHHHSSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEE
T ss_pred             CCcccCCCCCcEEEEECCCCcccCC----CCHHHHHH-HHHHHHhccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEec
Confidence            4555522244556777766643322    12222221 2111 1267889999998754 666655555 4988999999


Q ss_pred             CCchHHHHHHH----cCCC-eEEeCCCCCchhHHHHhhCCCccEEEEccCChHH---HHHHHHHhccCCceEEEeccCC
Q 016660          234 VISEKFEIGKR----FGVT-EFVNSKNCGDKSIIIDMTDGGADYCFECVGLASL---VQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       234 ~~~~~~~~~~~----lg~~-~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~---~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      .++.-.+.+++    -|.. .+.-...       .....+.||+|+-..-....   .....+.++++ |.+++.|...
T Consensus       192 iDp~Av~~a~~N~~~N~~~~~~~v~~~-------~~~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~-G~lIlSGIl~  262 (295)
T PF06325_consen  192 IDPLAVEAARENAELNGVEDRIEVSLS-------EDLVEGKFDLVVANILADVLLELAPDIASLLKPG-GYLILSGILE  262 (295)
T ss_dssp             SSCHHHHHHHHHHHHTT-TTCEEESCT-------SCTCCS-EEEEEEES-HHHHHHHHHHCHHHEEEE-EEEEEEEEEG
T ss_pred             CCHHHHHHHHHHHHHcCCCeeEEEEEe-------cccccccCCEEEECCCHHHHHHHHHHHHHhhCCC-CEEEEccccH
Confidence            98876665543    2322 2211111       01112479999866655542   34566788997 9999998764

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.50  E-value=0.016  Score=52.42  Aligned_cols=82  Identities=22%  Similarity=0.178  Sum_probs=52.8

Q ss_pred             cCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc-CCC--eE--EeCCCCCchhH-HHHhh--CC
Q 016660          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVT--EF--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       198 ~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-g~~--~v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      ...++.++||.|+ |.+|..+++.+...|+ +|+.+.++++..+.+.+. .-.  .+  .|..+...... +.+..  -+
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFG   85 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            3457789999997 9999999999999999 799998877666544432 211  12  23333111111 11111  13


Q ss_pred             CccEEEEccCCh
Q 016660          269 GADYCFECVGLA  280 (385)
Q Consensus       269 ~~d~vid~~g~~  280 (385)
                      ++|+||.+.|..
T Consensus        86 ~~d~vi~~ag~~   97 (264)
T PRK12829         86 GLDVLVNNAGIA   97 (264)
T ss_pred             CCCEEEECCCCC
Confidence            699999988754

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.43  E-value=0.009  Score=45.95  Aligned_cols=89  Identities=21%  Similarity=0.258  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      ++.+|||+|+|.+|..-++.+...|+ +|++++...   +..+  +--.. ..++  +    .... .++|+||-+.+.+
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~--~~i~~-~~~~--~----~~~l-~~~~lV~~at~d~   71 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSE--GLIQL-IRRE--F----EEDL-DGADLVFAATDDP   71 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHH--TSCEE-EESS-------GGGC-TTESEEEE-SS-H
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhh--hHHHH-Hhhh--H----HHHH-hhheEEEecCCCH
Confidence            57889999999999999999999999 888887664   2222  11111 1111  1    1111 2699999999998


Q ss_pred             HHHHHHHHHhccCCceEEEeccCC
Q 016660          281 SLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       281 ~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      ..-+......+.. +..+.....+
T Consensus        72 ~~n~~i~~~a~~~-~i~vn~~D~p   94 (103)
T PF13241_consen   72 ELNEAIYADARAR-GILVNVVDDP   94 (103)
T ss_dssp             HHHHHHHHHHHHT-TSEEEETT-C
T ss_pred             HHHHHHHHHHhhC-CEEEEECCCc
Confidence            8555666666665 8888887654

>PRK06182 short chain dehydrogenase; Validated

Probab=96.42  E-value=0.016  Score=52.94  Aligned_cols=78  Identities=18%  Similarity=0.213  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe-EEeCCCCCchhH-HHHhh--CCCccEEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSI-IIDMT--DGGADYCFE  275 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vv~~~~~~~~~~-i~~~~--~g~~d~vid  275 (385)
                      ++.+++|.|+ |++|...++.+...|+ +|+++++++++++.+...++.. ..|..+...... +....  .+++|++|+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~   80 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN   80 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            3578999997 9999999999988999 8999988888776655555432 234444222221 22221  237999999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      +.|.
T Consensus        81 ~ag~   84 (273)
T PRK06182         81 NAGY   84 (273)
T ss_pred             CCCc
Confidence            9884

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.40  E-value=0.056  Score=47.51  Aligned_cols=103  Identities=19%  Similarity=0.218  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc-------------------hHHHHHH----HcCC-CeEEeCCCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-------------------EKFEIGK----RFGV-TEFVNSKNC  256 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~-------------------~~~~~~~----~lg~-~~vv~~~~~  256 (385)
                      +...|+|+|.|++|-+++..+-..|+.++..+|-++                   .|.+.++    +... .+|--.++.
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f  108 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF  108 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence            567799999999999999999999998888886432                   1111111    1221 123222221


Q ss_pred             CchhHHHHhhCCCccEEEEccCChHHHHHH-HHHhccCCceEEEeccCC
Q 016660          257 GDKSIIIDMTDGGADYCFECVGLASLVQEA-YACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       257 ~~~~~i~~~~~g~~d~vid~~g~~~~~~~~-~~~l~~~~G~~v~~g~~~  304 (385)
                      -..+.+..+...+||+|+||.-+-.+--.+ ..|.+.+ -.++..+...
T Consensus       109 ~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k-i~vIss~Gag  156 (263)
T COG1179         109 ITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK-IPVISSMGAG  156 (263)
T ss_pred             hCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcC-CCEEeecccc
Confidence            222236666666999999999876533333 3355554 5666665543

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=96.40  E-value=0.02  Score=52.36  Aligned_cols=100  Identities=19%  Similarity=0.300  Sum_probs=61.5

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCe--EEeCCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE--FVNSKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~--vv~~~~~~~~~~i~~~~  266 (385)
                      +.+.+++++|++||-+|+|- |-+++.+|+..|+ +|++++.|++..+.++    +.|...  -+...+  .    +.+ 
T Consensus        54 ~~~~~~l~~G~~vLDiGcGw-G~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D--~----~~~-  124 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCGW-GGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQD--Y----RDL-  124 (273)
T ss_dssp             HHTTTT--TT-EEEEES-TT-SHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES---G----GG--
T ss_pred             HHHHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEee--c----ccc-
Confidence            55778999999999999873 6677788888899 8999999999888765    355321  122222  1    222 


Q ss_pred             CCCccEEEEc-----cCC---hHHHHHHHHHhccCCceEEEecc
Q 016660          267 DGGADYCFEC-----VGL---ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       267 ~g~~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .+.||.|+..     +|.   +..++.+.+.|+++ |++++-..
T Consensus       125 ~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~lq~i  167 (273)
T PF02353_consen  125 PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG-GRLVLQTI  167 (273)
T ss_dssp             --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT-EEEEEEEE
T ss_pred             CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC-cEEEEEec
Confidence            2278988653     332   24478899999997 99875443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK08017 oxidoreductase; Provisional

Probab=96.40  E-value=0.018  Score=51.80  Aligned_cols=76  Identities=21%  Similarity=0.274  Sum_probs=53.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhH----HHHhhCCCccEEEEc
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSI----IIDMTDGGADYCFEC  276 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~----i~~~~~g~~d~vid~  276 (385)
                      +++||+|+ |.+|...++.+...|+ +|+++.++.++.+.+++.++..+ .|..+......    +.....+.+|.++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~   81 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN   81 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            47999998 9999999999999999 89999999888887777776533 34433211111    222223468999988


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      .|.
T Consensus        82 ag~   84 (256)
T PRK08017         82 AGF   84 (256)
T ss_pred             CCC
Confidence            774

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.40  E-value=0.091  Score=47.69  Aligned_cols=104  Identities=15%  Similarity=0.201  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch-------------------HH----HHHHHcCCC-eEEeCCCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-------------------KF----EIGKRFGVT-EFVNSKNC  256 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~-------------------~~----~~~~~lg~~-~vv~~~~~  256 (385)
                      .+.+|+|+|.|++|..++..+-..|+.+++.+|.+.-                   |.    +.+.++... .|....+.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~  108 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF  108 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence            5678999999999999999999999889998875421                   11    112223322 23222221


Q ss_pred             CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCC
Q 016660          257 GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       257 ~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      -..+.+..+....+|+||||......-..+.+......-.++..|..+
T Consensus       109 i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag  156 (268)
T PRK15116        109 ITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG  156 (268)
T ss_pred             cChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence            111223344444799999999986544444444444314566665543

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.061  Score=47.71  Aligned_cols=78  Identities=19%  Similarity=0.230  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCC---CeEE--eCCCCCchhH-HHHhhC--CCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV---TEFV--NSKNCGDKSI-IIDMTD--GGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~---~~vv--~~~~~~~~~~-i~~~~~--g~~  270 (385)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++++++...+ +++..   -+++  |..+...... +.....  +++
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   83 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL   83 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999987 9999999988888899 799998887765533 33321   1222  3222111111 222211  368


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|++.|.
T Consensus        84 d~vi~~ag~   92 (237)
T PRK07326         84 DVLIANAGV   92 (237)
T ss_pred             CEEEECCCC
Confidence            999998864

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.38  E-value=0.025  Score=50.46  Aligned_cols=75  Identities=21%  Similarity=0.337  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeE-EeCCCCCchhHHHHhhC--CCccEEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF-VNSKNCGDKSIIIDMTD--GGADYCFE  275 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~v-v~~~~~~~~~~i~~~~~--g~~d~vid  275 (385)
                      ++.+++|+|+ |.+|...++.+...|+ +|+++++++++.+.+. ..+...+ .|..+   ...+.....  +++|++|+
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~~d~vi~   83 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVGD---DAAIRAALAAAGAFDGLVN   83 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCCC---HHHHHHHHHHhCCCCEEEE
Confidence            4678999997 9999999999999999 7998988877665443 3444322 34333   222333332  36899999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      +.|.
T Consensus        84 ~ag~   87 (245)
T PRK07060         84 CAGI   87 (245)
T ss_pred             CCCC
Confidence            9874

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.36  E-value=0.046  Score=53.91  Aligned_cols=79  Identities=24%  Similarity=0.334  Sum_probs=50.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch--H-HHHHHHcCCCe-EEeCCCCCchhHHHHhh---CCCcc
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--K-FEIGKRFGVTE-FVNSKNCGDKSIIIDMT---DGGAD  271 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~--~-~~~~~~lg~~~-vv~~~~~~~~~~i~~~~---~g~~d  271 (385)
                      .++.++||+|+ |++|...++.+...|+ +|+++++.+.  . .+...+++... .+|..+......+....   .+++|
T Consensus       208 ~~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id  286 (450)
T PRK08261        208 LAGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD  286 (450)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence            35789999987 9999999999999999 7888876432  2 22334455432 24544422222222211   23689


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++|++.|.
T Consensus       287 ~vi~~AG~  294 (450)
T PRK08261        287 IVVHNAGI  294 (450)
T ss_pred             EEEECCCc
Confidence            99999983

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.35  E-value=0.034  Score=53.70  Aligned_cols=91  Identities=22%  Similarity=0.283  Sum_probs=59.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHH--cCCC---eEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          205 VVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR--FGVT---EFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~--lg~~---~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      |+|+|+|.+|..+++.+...+- .+|++.+++.++.+.+.+  .+..   ..+|..+   .+.+.++.. +.|+||+|+|
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~l~~~~~-~~dvVin~~g   76 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND---PESLAELLR-GCDVVINCAG   76 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT---HHHHHHHHT-TSSEEEE-SS
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC---HHHHHHHHh-cCCEEEECCc
Confidence            7899999999999999887663 389999999999776653  2221   2234333   223555554 4699999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEe
Q 016660          279 LASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      .......+..|+..+ -.++..
T Consensus        77 p~~~~~v~~~~i~~g-~~yvD~   97 (386)
T PF03435_consen   77 PFFGEPVARACIEAG-VHYVDT   97 (386)
T ss_dssp             GGGHHHHHHHHHHHT--EEEES
T ss_pred             cchhHHHHHHHHHhC-CCeecc
Confidence            876566677777776 778774

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.33  E-value=0.086  Score=48.03  Aligned_cols=110  Identities=21%  Similarity=0.270  Sum_probs=67.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe-E----EeCCCCCchhHHHHh---h
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F----VNSKNCGDKSIIIDM---T  266 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v----v~~~~~~~~~~i~~~---~  266 (385)
                      -.+..|+|.|| +++|...+.-+-..|+ +++.+.+..++++..    ++.+... +    .|..+.+..+...+.   .
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~   88 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH   88 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence            36788999998 9999988888888898 666666667666554    4445433 2    233332222211111   2


Q ss_pred             CCCccEEEEccCCh-------------------------HHHHHHHHHhccCC-ceEEEeccCCCCCccc
Q 016660          267 DGGADYCFECVGLA-------------------------SLVQEAYACCRKGW-GKTIVLGVDQPGSQLS  310 (385)
Q Consensus       267 ~g~~d~vid~~g~~-------------------------~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~  310 (385)
                      -|++|+.++.+|-.                         ..-+.++..|++.+ |++|.++...+....+
T Consensus        89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P  158 (282)
T KOG1205|consen   89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLP  158 (282)
T ss_pred             cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCC
Confidence            24799999988752                         11245666666644 8999888655433333

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=96.33  E-value=0.06  Score=47.89  Aligned_cols=108  Identities=23%  Similarity=0.382  Sum_probs=74.4

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhCC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~g  268 (385)
                      +....+..+|++||=+|+|. |-+++.+++..|-.+|+++|.+++-++.+++    .|... +..-. .... -..+.+.
T Consensus        43 ~i~~~~~~~g~~vLDva~GT-Gd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~-~dAe-~LPf~D~  118 (238)
T COG2226          43 LISLLGIKPGDKVLDVACGT-GDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVV-GDAE-NLPFPDN  118 (238)
T ss_pred             HHHhhCCCCCCEEEEecCCc-cHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEE-echh-hCCCCCC
Confidence            33445566899999887765 8899999999985599999999998888765    23221 11111 0111 1223333


Q ss_pred             CccEEEEccCC------hHHHHHHHHHhccCCceEEEeccCCC
Q 016660          269 GADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGVDQP  305 (385)
Q Consensus       269 ~~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~g~~~~  305 (385)
                      .||+|.-+.|-      +.+++++.+.++++ |+++++....+
T Consensus       119 sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg-G~~~vle~~~p  160 (238)
T COG2226         119 SFDAVTISFGLRNVTDIDKALKEMYRVLKPG-GRLLVLEFSKP  160 (238)
T ss_pred             ccCEEEeeehhhcCCCHHHHHHHHHHhhcCC-eEEEEEEcCCC
Confidence            79998776664      35689999999997 99998876543

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.32  E-value=0.046  Score=45.39  Aligned_cols=92  Identities=20%  Similarity=0.257  Sum_probs=60.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      .-.|.+++|.|-|.+|.-.++.++.+|+ +|++++.++-+.-.+..-|.. +..         +.+. -...|++|-++|
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~-v~~---------~~~a-~~~adi~vtaTG   87 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE-VMT---------LEEA-LRDADIFVTATG   87 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E-EE----------HHHH-TTT-SEEEE-SS
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE-ecC---------HHHH-HhhCCEEEECCC
Confidence            4678999999999999999999999999 999999988776666655653 221         1111 125799999999


Q ss_pred             ChHHH-HHHHHHhccCCceEEEeccC
Q 016660          279 LASLV-QEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       279 ~~~~~-~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ....+ .+-++.|+++ ..+..+|..
T Consensus        88 ~~~vi~~e~~~~mkdg-ail~n~Gh~  112 (162)
T PF00670_consen   88 NKDVITGEHFRQMKDG-AILANAGHF  112 (162)
T ss_dssp             SSSSB-HHHHHHS-TT-EEEEESSSS
T ss_pred             CccccCHHHHHHhcCC-eEEeccCcC
Confidence            87643 5778889996 556566643

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.32  E-value=0.03  Score=50.43  Aligned_cols=74  Identities=18%  Similarity=0.202  Sum_probs=50.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC-eE--EeCCCCCchhHHHHhhCCCccEE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSIIIDMTDGGADYC  273 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~v--v~~~~~~~~~~i~~~~~g~~d~v  273 (385)
                      +.++||.|+ |.+|..+++.+...|+ +|+++.+++++.+.+.    ..+.. .+  .|..+   ...+.....+++|++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~id~v   77 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD---AIDRAQAAEWDVDVL   77 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC---HHHHHHHhcCCCCEE
Confidence            457999997 9999999999999999 8888888776554433    23322 11  23333   223444444589999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      |++.|.
T Consensus        78 i~~ag~   83 (257)
T PRK09291         78 LNNAGI   83 (257)
T ss_pred             EECCCc
Confidence            999873

>PRK06128 oxidoreductase; Provisional

Probab=96.32  E-value=0.074  Score=49.34  Aligned_cols=101  Identities=22%  Similarity=0.142  Sum_probs=59.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch--H----HHHHHHcCCCeEE---eCCCCCchhH-HHHhh--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--K----FEIGKRFGVTEFV---NSKNCGDKSI-IIDMT--D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~--~----~~~~~~lg~~~vv---~~~~~~~~~~-i~~~~--~  267 (385)
                      .+.++||.|+ |++|...+..+...|+ +|+.+.++.+  +    .+.+++.|....+   |..+...... +.+..  -
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  132 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL  132 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            4678999987 9999999999888999 7777654432  1    2233344543222   3322111111 22221  1


Q ss_pred             CCccEEEEccCCh--------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          268 GGADYCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       268 g~~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +++|++|+++|..                          ..++.++..+.++ |+++.++..
T Consensus       133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~iv~~sS~  193 (300)
T PRK06128        133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPG-ASIINTGSI  193 (300)
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcC-CEEEEECCc
Confidence            3699999988741                          1123445556675 898887653

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.31  E-value=0.017  Score=50.35  Aligned_cols=92  Identities=17%  Similarity=0.046  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch-HH-HHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KF-EIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~-~~-~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      .+.+|||+|+|.+|...+..+...|+ +|++++.... .+ +++.. +.- ......  +.+.  .  -.++|+||-+++
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~-~~i-~~~~~~--~~~~--~--l~~adlViaaT~   79 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEE-GKI-RWKQKE--FEPS--D--IVDAFLVIAATN   79 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhC-CCE-EEEecC--CChh--h--cCCceEEEEcCC
Confidence            56789999999999999988888998 7888854321 11 22222 211 111111  1110  0  126899999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      .++ ++..+...+.. +.++.....
T Consensus        80 d~e-lN~~i~~~a~~-~~lvn~~d~  102 (202)
T PRK06718         80 DPR-VNEQVKEDLPE-NALFNVITD  102 (202)
T ss_pred             CHH-HHHHHHHHHHh-CCcEEECCC
Confidence            988 77666666664 667766543

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.03  Score=51.84  Aligned_cols=78  Identities=22%  Similarity=0.286  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC-eE--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      .+.++||+|+ |++|...++.+...|+ +|++++++.++.+.+.    +.+.+ .+  .|..+...... +....  -+.
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  117 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGG  117 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4578999987 9999999998888899 8999988877655432    23332 12  23322111111 22111  236


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus       118 id~li~~AG~  127 (293)
T PRK05866        118 VDILINNAGR  127 (293)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.27  E-value=0.033  Score=50.50  Aligned_cols=78  Identities=15%  Similarity=0.100  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-eE--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.+    .+.. .+  .|..+...... +....  -++
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR   87 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5788999987 9999999999988999 89999888776553322    2322 22  23333211111 11111  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        88 id~vi~~Ag~   97 (263)
T PRK07814         88 LDIVVNNVGG   97 (263)
T ss_pred             CCEEEECCCC
Confidence            8999999873

>PRK09186 flagellin modification protein A; Provisional

Probab=96.24  E-value=0.08  Score=47.59  Aligned_cols=77  Identities=19%  Similarity=0.271  Sum_probs=48.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHc----CCCe----EEeCCCCCchhH-HHHhhC--
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF----GVTE----FVNSKNCGDKSI-IIDMTD--  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l----g~~~----vv~~~~~~~~~~-i~~~~~--  267 (385)
                      ++.++||.|+ |.+|...+..+...|+ +|+++.+++++.+.+ .++    +...    ..|..+.+.... +.....  
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   81 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY   81 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            4678999997 9999999999999999 788888877765433 222    2221    223333211111 222111  


Q ss_pred             CCccEEEEccC
Q 016660          268 GGADYCFECVG  278 (385)
Q Consensus       268 g~~d~vid~~g  278 (385)
                      +++|++|++.+
T Consensus        82 ~~id~vi~~A~   92 (256)
T PRK09186         82 GKIDGAVNCAY   92 (256)
T ss_pred             CCccEEEECCc
Confidence            35899999885

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.21  E-value=0.065  Score=46.02  Aligned_cols=96  Identities=17%  Similarity=0.198  Sum_probs=61.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhh-CCCccEE
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMT-DGGADYC  273 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~-~g~~d~v  273 (385)
                      ++++.+||-+|+|. |..++.+++.....+|++++.+++..+.+++    .+.+.+ .....+.    ..+. .+.||+|
T Consensus        43 l~~g~~VLDiGcGt-G~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i-~~~~~d~----~~~~~~~~fDlV  116 (187)
T PRK00107         43 LPGGERVLDVGSGA-GFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNV-TVVHGRA----EEFGQEEKFDVV  116 (187)
T ss_pred             cCCCCeEEEEcCCC-CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCE-EEEeccH----hhCCCCCCccEE
Confidence            45688999998755 5666666664433399999999887776653    454332 1111111    1111 2379999


Q ss_pred             EEccCC--hHHHHHHHHHhccCCceEEEec
Q 016660          274 FECVGL--ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       274 id~~g~--~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +-....  ...++.+.+.++++ |+++.+-
T Consensus       117 ~~~~~~~~~~~l~~~~~~LkpG-G~lv~~~  145 (187)
T PRK00107        117 TSRAVASLSDLVELCLPLLKPG-GRFLALK  145 (187)
T ss_pred             EEccccCHHHHHHHHHHhcCCC-eEEEEEe
Confidence            864322  35577899999997 9988773

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.20  E-value=0.028  Score=53.85  Aligned_cols=96  Identities=17%  Similarity=0.208  Sum_probs=67.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      -.+.++||+|+|-+|.+++..+...|++.|+++.++.+|.+ +++++|+. ++..++      +..... .+|+||.+++
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~e------l~~~l~-~~DvVissTs  247 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVALEE------LLEALA-EADVVISSTS  247 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHHH------HHHhhh-hCCEEEEecC
Confidence            47889999999999999999999999889999999988866 57788843 333333      222221 5899999998


Q ss_pred             ChHHH---HHHHHHhccCCc-eEEEeccC
Q 016660          279 LASLV---QEAYACCRKGWG-KTIVLGVD  303 (385)
Q Consensus       279 ~~~~~---~~~~~~l~~~~G-~~v~~g~~  303 (385)
                      .++.+   ......++.... -++.++..
T Consensus       248 a~~~ii~~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         248 APHPIITREMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             CCccccCHHHHHHHHhcccCeEEEEecCC
Confidence            87532   344455555312 35566653

>PRK04148 hypothetical protein; Provisional

Probab=96.20  E-value=0.11  Score=41.75  Aligned_cols=88  Identities=18%  Similarity=0.203  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      ..++.+++++|.| .|...++.+...|. .|+++|.+++..+.+++.+...+.+--   +.+....  -+++|++..+-.
T Consensus        14 ~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDl---f~p~~~~--y~~a~liysirp   86 (134)
T PRK04148         14 KGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDL---FNPNLEI--YKNAKLIYSIRP   86 (134)
T ss_pred             cccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcC---CCCCHHH--HhcCCEEEEeCC
Confidence            3456789999998 78755556667898 999999999999999988875443211   1111111  126999999999


Q ss_pred             ChHHHHHHHHHhccC
Q 016660          279 LASLVQEAYACCRKG  293 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~  293 (385)
                      .++....+++..++-
T Consensus        87 p~el~~~~~~la~~~  101 (134)
T PRK04148         87 PRDLQPFILELAKKI  101 (134)
T ss_pred             CHHHHHHHHHHHHHc
Confidence            998555555555553

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.20  E-value=0.05  Score=50.07  Aligned_cols=72  Identities=19%  Similarity=0.167  Sum_probs=50.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcC----CCeEEeCCCCCchhHHHHhhCCCccEEE
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG----VTEFVNSKNCGDKSIIIDMTDGGADYCF  274 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg----~~~vv~~~~~~~~~~i~~~~~g~~d~vi  274 (385)
                      ..+.+|+|+|+|++|.+++..+...|+++|++++++.+|.+.+. .++    ...+....+      +.... ..+|+||
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~------~~~~~-~~aDiVI  197 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSD------LAAAL-AAADGLV  197 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccc------hHhhh-CCCCEEE
Confidence            35678999999999999999999999989999999988876543 332    112222211      11111 2589999


Q ss_pred             EccC
Q 016660          275 ECVG  278 (385)
Q Consensus       275 d~~g  278 (385)
                      +|+.
T Consensus       198 naTp  201 (284)
T PRK12549        198 HATP  201 (284)
T ss_pred             ECCc
Confidence            9964

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.20  E-value=0.068  Score=46.58  Aligned_cols=99  Identities=19%  Similarity=0.174  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc-------------------hHHH----HHHHcCCC-eEEeCCCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-------------------EKFE----IGKRFGVT-EFVNSKNC  256 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~-------------------~~~~----~~~~lg~~-~vv~~~~~  256 (385)
                      .+.+|+|+|+|++|..+++.+...|+.+++.+|.+.                   .|.+    .++++... .+-.....
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~   99 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER   99 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence            457799999999999999999999998999998652                   1222    22233322 12111111


Q ss_pred             CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCce-EEEec
Q 016660          257 GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK-TIVLG  301 (385)
Q Consensus       257 ~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~-~v~~g  301 (385)
                      -....+.++. .++|+||+|..+.......-+...+. +. ++..+
T Consensus       100 i~~~~~~~~~-~~~D~Vi~~~d~~~~r~~l~~~~~~~-~ip~i~~~  143 (202)
T TIGR02356       100 VTAENLELLI-NNVDLVLDCTDNFATRYLINDACVAL-GTPLISAA  143 (202)
T ss_pred             CCHHHHHHHH-hCCCEEEECCCCHHHHHHHHHHHHHc-CCCEEEEE
Confidence            1112233333 26999999998877544444444443 43 44444

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.19  E-value=0.035  Score=50.43  Aligned_cols=78  Identities=19%  Similarity=0.252  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc----CCC-eE--EeCCCCCchhH-HHHhh-CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVT-EF--VNSKNCGDKSI-IIDMT-DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l----g~~-~v--v~~~~~~~~~~-i~~~~-~g~  269 (385)
                      ++.++||.|+ +++|...++.+...|+ +|+.+++++++.+.+. ++    +.. ..  .|..+...... +.... -++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            4778999987 9999999999999999 8999888877655432 22    322 12  23333211111 22221 146


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|+++++.|.
T Consensus        86 iD~lv~nag~   95 (263)
T PRK08339         86 PDIFFFSTGG   95 (263)
T ss_pred             CcEEEECCCC
Confidence            8999999874

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.18  E-value=0.037  Score=50.10  Aligned_cols=77  Identities=18%  Similarity=0.194  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc-CCC-eE--EeCCCCCchhH-HHHhhC--CCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVT-EF--VNSKNCGDKSI-IIDMTD--GGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-g~~-~v--v~~~~~~~~~~-i~~~~~--g~~d~  272 (385)
                      ++.++||.|+ |++|...++.+...|+ +|++++++.++.+.+.+. +.. ..  .|..+...... +.+...  +.+|+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   82 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDC   82 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            4688999987 9999999999999999 899888887766655443 322 11  23333111111 222222  36899


Q ss_pred             EEEccC
Q 016660          273 CFECVG  278 (385)
Q Consensus       273 vid~~g  278 (385)
                      +|++.|
T Consensus        83 li~~Ag   88 (262)
T TIGR03325        83 LIPNAG   88 (262)
T ss_pred             EEECCC
Confidence            999987

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.065  Score=47.43  Aligned_cols=78  Identities=18%  Similarity=0.103  Sum_probs=48.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH----HHHcCCCeE-EeCCCCCchhH-HHHhh--CCCcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFGVTEF-VNSKNCGDKSI-IIDMT--DGGAD  271 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~----~~~lg~~~v-v~~~~~~~~~~-i~~~~--~g~~d  271 (385)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+++++++...    ++..+...+ .|..+...... +....  -+++|
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLD   84 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcC
Confidence            4678999997 9999999999988899 79999887665332    222333221 23333111111 11111  13689


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      +||++.|.
T Consensus        85 ~vi~~ag~   92 (239)
T PRK12828         85 ALVNIAGA   92 (239)
T ss_pred             EEEECCcc
Confidence            99998874

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.038  Score=48.79  Aligned_cols=76  Identities=12%  Similarity=0.136  Sum_probs=50.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE--EeCCCCCchhHHHHhhC-CCccEEEEccC
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF--VNSKNCGDKSIIIDMTD-GGADYCFECVG  278 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v--v~~~~~~~~~~i~~~~~-g~~d~vid~~g  278 (385)
                      .+++|.|+ |++|...++.+...|+ +|+++++++++.+.+++++...+  .|..+......+.+... +++|++|.++|
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence            46899987 9999998888888899 89999888877665555543222  33333212222333333 37999999886


Q ss_pred             C
Q 016660          279 L  279 (385)
Q Consensus       279 ~  279 (385)
                      .
T Consensus        81 ~   81 (225)
T PRK08177         81 I   81 (225)
T ss_pred             c
Confidence            4

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.14  E-value=0.039  Score=51.09  Aligned_cols=78  Identities=21%  Similarity=0.267  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCC--Ce-E--EeCCCCCchhH-HHHhh--CCCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV--TE-F--VNSKNCGDKSI-IIDMT--DGGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~--~~-v--v~~~~~~~~~~-i~~~~--~g~~  270 (385)
                      ++.++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+ ++++.  .. .  .|..+...... +.+..  .+.+
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   86 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGI   86 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999987 9999999999999999 899898888776543 44542  11 1  34333211111 22221  1469


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|+++|.
T Consensus        87 d~vI~nAG~   95 (296)
T PRK05872         87 DVVVANAGI   95 (296)
T ss_pred             CEEEECCCc
Confidence            999999985

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.12  E-value=0.045  Score=48.98  Aligned_cols=78  Identities=21%  Similarity=0.178  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcC--CC-eEE--eCCCCCchhH-HHHhh--CCCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG--VT-EFV--NSKNCGDKSI-IIDMT--DGGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg--~~-~vv--~~~~~~~~~~-i~~~~--~g~~  270 (385)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+. .+.  .. ..+  |..+...... +....  .+.+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   82 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV   82 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4568999997 9999999999888899 7999999887665432 222  21 122  2222111111 11111  1368


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |+||.+.|.
T Consensus        83 d~vi~~ag~   91 (251)
T PRK07231         83 DILVNNAGT   91 (251)
T ss_pred             CEEEECCCC
Confidence            999999875

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.042  Score=49.44  Aligned_cols=78  Identities=21%  Similarity=0.231  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe--E--EeCCCCCchhH-HHHhhC--CCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--F--VNSKNCGDKSI-IIDMTD--GGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~--v--v~~~~~~~~~~-i~~~~~--g~~d~  272 (385)
                      ++.++||.|+ |.+|...++.+...|+ +|+.+.++++..+...++....  .  .|..+...... +.....  +++|+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4678999997 9999999998888999 7999988877655555443221  2  23322111111 111111  36899


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|.++|.
T Consensus        93 vi~~ag~   99 (255)
T PRK06841         93 LVNSAGV   99 (255)
T ss_pred             EEECCCC
Confidence            9999974

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.10  E-value=0.052  Score=48.58  Aligned_cols=78  Identities=17%  Similarity=0.239  Sum_probs=48.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch--HHHHHHHcCCC-eE--EeCCCCCchhH-HHHhhC--CCcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVT-EF--VNSKNCGDKSI-IIDMTD--GGAD  271 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~--~~~~~~~lg~~-~v--v~~~~~~~~~~-i~~~~~--g~~d  271 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+.+++++.  ..+.+++++.. .+  .|..+...... +.+...  +++|
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   82 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID   82 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4788999997 9999999999988999 8888877642  12333444532 12  23333111111 222221  3699


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++|++.|.
T Consensus        83 ~li~~ag~   90 (248)
T TIGR01832        83 ILVNNAGI   90 (248)
T ss_pred             EEEECCCC
Confidence            99998874

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.10  E-value=0.08  Score=46.58  Aligned_cols=100  Identities=16%  Similarity=0.231  Sum_probs=66.4

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHH----HcCCCeE--EeCCCCCchhHHHHh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGK----RFGVTEF--VNSKNCGDKSIIIDM  265 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~lg~~~v--v~~~~~~~~~~i~~~  265 (385)
                      +.+...++++++||-+|+|. |..++.+++..+. .+|++++.+++..+.++    ++|.+.+  +..+.   ..   .+
T Consensus        69 ~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~---~~---~~  141 (215)
T TIGR00080        69 MTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG---TQ---GW  141 (215)
T ss_pred             HHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc---cc---CC
Confidence            44556788999999998866 6777788887653 26999999988777655    3454322  21111   00   11


Q ss_pred             h-CCCccEEEEccCChHHHHHHHHHhccCCceEEEe
Q 016660          266 T-DGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       266 ~-~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      . .+.||+|+-........+...+.|+++ |+++..
T Consensus       142 ~~~~~fD~Ii~~~~~~~~~~~~~~~L~~g-G~lv~~  176 (215)
T TIGR00080       142 EPLAPYDRIYVTAAGPKIPEALIDQLKEG-GILVMP  176 (215)
T ss_pred             cccCCCCEEEEcCCcccccHHHHHhcCcC-cEEEEE
Confidence            1 236999875554555467888999997 998764

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.09  E-value=0.07  Score=44.45  Aligned_cols=89  Identities=18%  Similarity=0.083  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .|.+|||+|+|.+|.--++.+...|+ .|++++  ++..+.+.+++.-. +..+.  +.+.    .-.++|+||-+++..
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~-~~~~~--~~~~----dl~~a~lViaaT~d~   81 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYIT-WKQKT--FSND----DIKDAHLIYAATNQH   81 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcE-EEecc--cChh----cCCCceEEEECCCCH
Confidence            57889999999999998888888999 787774  44434444454211 22211  1110    012689999999988


Q ss_pred             HHHHHHHHHhccCCceEEEec
Q 016660          281 SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       281 ~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      + ++..+...++. ...+...
T Consensus        82 e-~N~~i~~~a~~-~~~vn~~  100 (157)
T PRK06719         82 A-VNMMVKQAAHD-FQWVNVV  100 (157)
T ss_pred             H-HHHHHHHHHHH-CCcEEEC
Confidence            8 77777766664 4455544

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.051  Score=49.21  Aligned_cols=80  Identities=24%  Similarity=0.322  Sum_probs=51.7

Q ss_pred             CCCCCEEEEEcC-C-HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-----cCCCeE----EeCCCCCchhHHHH-hh
Q 016660          199 VEVGSTVVIFGL-G-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVTEF----VNSKNCGDKSIIID-MT  266 (385)
Q Consensus       199 ~~~~~~VlI~G~-g-~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-----lg~~~v----v~~~~~~~~~~i~~-~~  266 (385)
                      +.++.++||+|+ | ++|...++.+...|+ +|+++++++++.+...+     ++...+    .|..+......+.+ ..
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   92 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV   92 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            445789999986 6 799999999999999 78888887766554322     453322    23333211111221 11


Q ss_pred             --CCCccEEEEccCC
Q 016660          267 --DGGADYCFECVGL  279 (385)
Q Consensus       267 --~g~~d~vid~~g~  279 (385)
                        .+.+|++|+++|.
T Consensus        93 ~~~g~id~li~~ag~  107 (262)
T PRK07831         93 ERLGRLDVLVNNAGL  107 (262)
T ss_pred             HHcCCCCEEEECCCC
Confidence              1468999999984

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.044  Score=49.37  Aligned_cols=79  Identities=15%  Similarity=0.208  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-eEE--eCCCCCchhH-HHHhh--CC
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFV--NSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~vv--~~~~~~~~~~-i~~~~--~g  268 (385)
                      .++.++||.|+ |.+|..++..+...|+ +|+++.+++++.+.+.+    .+.. .++  |..+...... +.+..  .+
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAG   85 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            45789999987 9999999999999999 89999888877654332    1221 222  3322111111 11111  23


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      .+|++|++.|.
T Consensus        86 ~~d~li~~ag~   96 (258)
T PRK06949         86 TIDILVNNSGV   96 (258)
T ss_pred             CCCEEEECCCC
Confidence            68999999984

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.07  E-value=0.052  Score=48.60  Aligned_cols=78  Identities=23%  Similarity=0.271  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe-E--EeCCCCCchhH-HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSI-IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--v~~~~~~~~~~-i~~~~~--g~  269 (385)
                      ++.++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+    +..+... .  .|..+...... +.....  ++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ   82 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4778999997 9999999999998999 789898887665433    2234431 2  23222111111 222222  36


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        83 id~vi~~ag~   92 (253)
T PRK08217         83 LNGLINNAGI   92 (253)
T ss_pred             CCEEEECCCc
Confidence            8999999873

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.051  Score=48.63  Aligned_cols=78  Identities=22%  Similarity=0.257  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCe-E--EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTE-F--VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      ++.++||.|+ |.+|...++.+...|+ +|+++++++++.+. .++++... .  .|..+...... +....  .+++|+
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDA   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4678999997 9999999999999999 89999887765543 34455432 2  23222111111 11111  236899


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        84 vi~~ag~   90 (249)
T PRK06500         84 VFINAGV   90 (249)
T ss_pred             EEECCCC
Confidence            9999874

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.06  E-value=0.11  Score=46.76  Aligned_cols=78  Identities=22%  Similarity=0.242  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC-eEE--eCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~vv--~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.+|||.|+ |.+|...++.+...|+ +|+++++++++.+...    +.+.. +++  |..+...... +....  .++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   81 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGG   81 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4578999987 9999999998888899 8888888877654332    22332 122  3322111111 11111  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|.+++.
T Consensus        82 ~d~vi~~a~~   91 (258)
T PRK12429         82 VDILVNNAGI   91 (258)
T ss_pred             CCEEEECCCC
Confidence            8999998874

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.06  E-value=0.047  Score=49.26  Aligned_cols=80  Identities=20%  Similarity=0.192  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH----HHHHcCCCe---EEeCCCCCchhHHHHhh---CC
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE----IGKRFGVTE---FVNSKNCGDKSIIIDMT---DG  268 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~----~~~~lg~~~---vv~~~~~~~~~~i~~~~---~g  268 (385)
                      .++.+++|.|+ |++|...++.+...|++.|+++++++++.+    .+++.+...   .+|..+......+.+..   -+
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG   83 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            35678999997 999999999999999954888888766544    223344432   12333321111111111   13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|++.|.
T Consensus        84 ~id~li~~ag~   94 (260)
T PRK06198         84 RLDALVNAAGL   94 (260)
T ss_pred             CCCEEEECCCc
Confidence            69999999985

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.05  E-value=0.023  Score=56.34  Aligned_cols=78  Identities=26%  Similarity=0.312  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc---------------------hHHHHHHHcCCCeEEeCCCCCch
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS---------------------EKFEIGKRFGVTEFVNSKNCGDK  259 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~---------------------~~~~~~~~lg~~~vv~~~~~~~~  259 (385)
                      .+.+|+|+|+|+.|+.++..++..|+ .|++++..+                     ...++++++|++..++..-....
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  218 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI  218 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCcc
Confidence            67899999999999999999999999 788887653                     24567788998755544221110


Q ss_pred             hHHHHhhCCCccEEEEccCChH
Q 016660          260 SIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       260 ~~i~~~~~g~~d~vid~~g~~~  281 (385)
                       .+..+. .++|.||.++|...
T Consensus       219 -~~~~~~-~~~D~vilAtGa~~  238 (467)
T TIGR01318       219 -SLDDLL-EDYDAVFLGVGTYR  238 (467)
T ss_pred             -CHHHHH-hcCCEEEEEeCCCC
Confidence             122222 26999999999754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06484 short chain dehydrogenase; Validated

Probab=96.05  E-value=0.1  Score=52.40  Aligned_cols=102  Identities=23%  Similarity=0.230  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCe---EEeCCCCCchhH-HHHhhC--CCcc
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE---FVNSKNCGDKSI-IIDMTD--GGAD  271 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~---vv~~~~~~~~~~-i~~~~~--g~~d  271 (385)
                      ..+.++||.|+ +++|...++.+...|+ +|+.+++++++.+.+. +++...   ..|..+...... +.....  +.+|
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id  345 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLD  345 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            45788999987 9999999999999999 8999988877766544 345432   123333211111 222221  3689


Q ss_pred             EEEEccCCh--------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          272 YCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       272 ~vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ++|+++|..                          ...+.++..++.+ |+++.++..
T Consensus       346 ~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-g~iv~isS~  402 (520)
T PRK06484        346 VLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQG-GVIVNLGSI  402 (520)
T ss_pred             EEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccC-CEEEEECch
Confidence            999988742                          0123345566665 899988754

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.096  Score=47.29  Aligned_cols=76  Identities=20%  Similarity=0.208  Sum_probs=50.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cC-CC-e--EEeCCCCCchhH-HHHhh---CCCccE
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FG-VT-E--FVNSKNCGDKSI-IIDMT---DGGADY  272 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg-~~-~--vv~~~~~~~~~~-i~~~~---~g~~d~  272 (385)
                      .++||+|+ |.+|...++.+...|+ +|+.++++.++.+.+.+ ++ .. +  .+|..+...... +....   .+.+|+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~   80 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV   80 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence            46899987 9999999998888999 89998888877665433 32 11 1  234443221111 22211   347899


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|.++|.
T Consensus        81 vi~~ag~   87 (260)
T PRK08267         81 LFNNAGI   87 (260)
T ss_pred             EEECCCC
Confidence            9999985

>PRK06194 hypothetical protein; Provisional

Probab=96.04  E-value=0.049  Score=50.00  Aligned_cols=78  Identities=21%  Similarity=0.337  Sum_probs=48.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHc---CCCeEEeCCCCCchhHHHHhh------CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF---GVTEFVNSKNCGDKSIIIDMT------DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l---g~~~vv~~~~~~~~~~i~~~~------~g~  269 (385)
                      ++.++||+|+ |++|...++.+...|+ +|++++++.++.+.. .++   +....+-.-+......+.+..      .++
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   83 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA   83 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            3578999987 9999999998888999 898888876654432 222   332111111212222222221      136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        84 id~vi~~Ag~   93 (287)
T PRK06194         84 VHLLFNNAGV   93 (287)
T ss_pred             CCEEEECCCC
Confidence            8999999985

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.05  Score=48.94  Aligned_cols=78  Identities=21%  Similarity=0.170  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-H---cCCCe---EEeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R---FGVTE---FVNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~---lg~~~---vv~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+.++++.++.+.+. +   .+.+.   ..|..+...... +....  -+.
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG   86 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4788999997 9999999999999999 8998888877655432 2   23221   123333111111 22211  147


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|++.|.
T Consensus        87 id~lv~~ag~   96 (253)
T PRK05867         87 IDIAVCNAGI   96 (253)
T ss_pred             CCEEEECCCC
Confidence            9999998874

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.02  E-value=0.055  Score=48.82  Aligned_cols=78  Identities=18%  Similarity=0.189  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeEEeCCCCCchhHHHHhh------CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSIIIDMT------DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~~~~------~g~  269 (385)
                      ++.++||.|+ |.+|...++.+...|+ +|+.+.+++++.+.+    ++.+....+-.-+......+.+..      .++
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS   84 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999997 9999999999999999 788888887654432    334543222112212222222211      135


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|.+.|.
T Consensus        85 ~d~vi~~ag~   94 (262)
T PRK13394         85 VDILVSNAGI   94 (262)
T ss_pred             CCEEEECCcc
Confidence            8999999875

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.051  Score=49.00  Aligned_cols=78  Identities=23%  Similarity=0.236  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCe-EEeCCCCCchhH-HHHhh--CCCccEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-FVNSKNCGDKSI-IIDMT--DGGADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-vv~~~~~~~~~~-i~~~~--~g~~d~vi  274 (385)
                      ++.+|||+|+ |++|...++.+...|+ +|+++++++.+.+.. .+++... ..|..+...... +....  .+++|++|
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   84 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAF   84 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            5789999997 9999999999999999 888888877765443 4454422 234444222111 22211  13689999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      .+.|.
T Consensus        85 ~~ag~   89 (255)
T PRK06057         85 NNAGI   89 (255)
T ss_pred             ECCCc
Confidence            98874

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.99  E-value=0.052  Score=50.63  Aligned_cols=91  Identities=24%  Similarity=0.395  Sum_probs=61.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      .+|.|+|+|.+|...+..++..|. ..|++.++++++.+.+++.|....+. .+  .    .+.. ...|+||.|++...
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~-~~--~----~~~~-~~aDvViiavp~~~   78 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT-TS--A----AEAV-KGADLVILCVPVGA   78 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec-CC--H----HHHh-cCCCEEEECCCHHH
Confidence            579999999999999998888884 37999999998888888887532111 11  1    1111 25899999998754


Q ss_pred             H---HHHHHHHhccCCceEEEecc
Q 016660          282 L---VQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       282 ~---~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .   ++.....++++ ..++.+|.
T Consensus        79 ~~~v~~~l~~~l~~~-~iv~dvgs  101 (307)
T PRK07502         79 SGAVAAEIAPHLKPG-AIVTDVGS  101 (307)
T ss_pred             HHHHHHHHHhhCCCC-CEEEeCcc
Confidence            2   23333455664 55655554

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.97  E-value=0.1  Score=49.11  Aligned_cols=94  Identities=16%  Similarity=0.092  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHH-HHcCCCEEEEEcCCchHHHHHH-H----cCCCeEEeCCCCCchhHHHHhhCCCccEE
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVDVISEKFEIGK-R----FGVTEFVNSKNCGDKSIIIDMTDGGADYC  273 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la-~~~G~~~vi~~~~~~~~~~~~~-~----lg~~~vv~~~~~~~~~~i~~~~~g~~d~v  273 (385)
                      ....+++|+|+|..|.+.+..+ ...++++|.+.++++++.+.+. +    ++.. +..+.+  ..    +.. ...|+|
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~~~--~~----~~~-~~aDiV  196 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVVNS--AD----EAI-EEADII  196 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEeCC--HH----HHH-hcCCEE
Confidence            4567899999999998877554 4678889999999988866433 2    3433 222222  11    111 258999


Q ss_pred             EEccCChHHHHHHHHHhccCCceEEEeccCC
Q 016660          274 FECVGLASLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       274 id~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      +.|+++.+.+- . ..+++| -.++.+|...
T Consensus       197 i~aT~s~~p~i-~-~~l~~G-~hV~~iGs~~  224 (325)
T PRK08618        197 VTVTNAKTPVF-S-EKLKKG-VHINAVGSFM  224 (325)
T ss_pred             EEccCCCCcch-H-HhcCCC-cEEEecCCCC
Confidence            99999886333 3 888996 8888898754

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=95.97  E-value=0.08  Score=48.55  Aligned_cols=139  Identities=22%  Similarity=0.297  Sum_probs=79.2

Q ss_pred             ceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhh-hccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 016660          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (385)
Q Consensus       155 ~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~-~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~  233 (385)
                      +|.+|..-....++++.+++.+.    ......|++. +.- ...++++.+||=+|+|+ |.++|..+| +|+++|+++|
T Consensus       120 sw~~~~~~~~~~~i~lDPGlAFG----TG~HpTT~lc-L~~Le~~~~~g~~vlDvGcGS-GILaIAa~k-LGA~~v~g~D  192 (300)
T COG2264         120 SWREYPEPSDELNIELDPGLAFG----TGTHPTTSLC-LEALEKLLKKGKTVLDVGCGS-GILAIAAAK-LGAKKVVGVD  192 (300)
T ss_pred             CCccCCCCCCceEEEEccccccC----CCCChhHHHH-HHHHHHhhcCCCEEEEecCCh-hHHHHHHHH-cCCceEEEec
Confidence            45554332235667777776442    2233334432 221 22366999999999865 776665554 5777999999


Q ss_pred             CCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh---HHHHHHHHHhccCCceEEEeccCC
Q 016660          234 VISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA---SLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       234 ~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      .++--.+.+++    -++.... ... .+.. .....++.||+|+-.+=..   ....+....++++ |++++.|...
T Consensus       193 iDp~AV~aa~eNa~~N~v~~~~-~~~-~~~~-~~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpg-g~lIlSGIl~  266 (300)
T COG2264         193 IDPQAVEAARENARLNGVELLV-QAK-GFLL-LEVPENGPFDVIVANILAEVLVELAPDIKRLLKPG-GRLILSGILE  266 (300)
T ss_pred             CCHHHHHHHHHHHHHcCCchhh-hcc-cccc-hhhcccCcccEEEehhhHHHHHHHHHHHHHHcCCC-ceEEEEeehH
Confidence            88765554443    2333210 000 0111 1122224799998655222   3356788899997 9999998753

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.97  E-value=0.16  Score=45.12  Aligned_cols=102  Identities=20%  Similarity=0.184  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc-------------------hHHH----HHHHcCCC-eEEeCCCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-------------------EKFE----IGKRFGVT-EFVNSKNC  256 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~-------------------~~~~----~~~~lg~~-~vv~~~~~  256 (385)
                      .+.+|+|+|.|++|..++..+-..|..+++.+|.+.                   .|.+    .++++... .+....+.
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~   89 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF   89 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence            346799999999999999999999999999987543                   1111    12223322 22212221


Q ss_pred             CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          257 GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       257 ~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      -..+....+....+|+|+||..+...-..+.+.....+-.++..+.
T Consensus        90 i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g  135 (231)
T cd00755          90 LTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMG  135 (231)
T ss_pred             cCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence            1112234444446999999999877544444444443134555443

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08264 short chain dehydrogenase; Validated

Probab=95.95  E-value=0.043  Score=48.76  Aligned_cols=73  Identities=16%  Similarity=0.225  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eEE--eCCCCCchhHHHHhhCC--CccEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFV--NSKNCGDKSIIIDMTDG--GADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vv--~~~~~~~~~~i~~~~~g--~~d~vi  274 (385)
                      .+.++||+|+ |.+|...++.+...|+++|++++++.++.+.   .+.. .++  |..+   ...+.+....  .+|+||
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~---~~~~~~~~~~~~~id~vi   78 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTD---PASVAAAAEAASDVTILV   78 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCC---HHHHHHHHHhcCCCCEEE
Confidence            4678999987 9999999999998998678888887766543   3322 222  3222   2223333333  589999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      .+.|.
T Consensus        79 ~~ag~   83 (238)
T PRK08264         79 NNAGI   83 (238)
T ss_pred             ECCCc
Confidence            99986

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.94  E-value=0.036  Score=50.99  Aligned_cols=77  Identities=14%  Similarity=0.044  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCC-eEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~-~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      ++.+++|+|+|++|.+++..+...|+++|+++.++.+|.+.+. .++.. .+....   ....+... -..+|+||+|++
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~---~~~~~~~~-~~~~DiVInaTp  199 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE---GDSGGLAI-EKAAEVLVSTVP  199 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc---chhhhhhc-ccCCCEEEECCC
Confidence            5788999999999999999999999989999999988776543 34321 111111   00001111 125899999987


Q ss_pred             ChH
Q 016660          279 LAS  281 (385)
Q Consensus       279 ~~~  281 (385)
                      ...
T Consensus       200 ~g~  202 (282)
T TIGR01809       200 ADV  202 (282)
T ss_pred             CCC
Confidence            643

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.93  E-value=0.069  Score=48.83  Aligned_cols=94  Identities=19%  Similarity=0.244  Sum_probs=64.6

Q ss_pred             ccccchhhhhhhhhhhcc-CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCc
Q 016660          181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  258 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~-~~~~~~VlI~G~g~-vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~  258 (385)
                      .+||.....+. +.+..+ --.|.+|+|+|.|. +|.-+++++...|+ +|+++.+....                    
T Consensus       137 ~~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~~--------------------  194 (286)
T PRK14175        137 FVPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSKD--------------------  194 (286)
T ss_pred             CCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchh--------------------
Confidence            45665444443 334433 34789999999855 99999999999999 88888643211                    


Q ss_pred             hhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          259 KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       259 ~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                         +.+.+. .+|+||.++|.+..+..  +.++++ ..++.+|..
T Consensus       195 ---l~~~~~-~ADIVIsAvg~p~~i~~--~~vk~g-avVIDvGi~  232 (286)
T PRK14175        195 ---MASYLK-DADVIVSAVGKPGLVTK--DVVKEG-AVIIDVGNT  232 (286)
T ss_pred             ---HHHHHh-hCCEEEECCCCCcccCH--HHcCCC-cEEEEcCCC
Confidence               111111 48999999999875654  457886 778888864

>PRK06180 short chain dehydrogenase; Provisional

Probab=95.92  E-value=0.057  Score=49.40  Aligned_cols=77  Identities=18%  Similarity=0.194  Sum_probs=50.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-e-E--EeCCCCCchhH-HHHhhC--CCccEE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-E-F--VNSKNCGDKSI-IIDMTD--GGADYC  273 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~-v--v~~~~~~~~~~-i~~~~~--g~~d~v  273 (385)
                      +.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.+.... . .  .|..+...... +.....  +++|++
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~v   82 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVL   82 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            567999987 9999999999888999 899999888877655543221 1 1  23333111111 121111  368999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      |++.|.
T Consensus        83 v~~ag~   88 (277)
T PRK06180         83 VNNAGY   88 (277)
T ss_pred             EECCCc
Confidence            999886

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.2  Score=44.53  Aligned_cols=101  Identities=18%  Similarity=0.136  Sum_probs=58.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch-HHH----HHHHcCCC-eEE--eCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFE----IGKRFGVT-EFV--NSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~-~~~----~~~~lg~~-~vv--~~~~~~~~~~-i~~~~--~g  268 (385)
                      ++.++||+|+ |++|...++.+...|+ +++.+.++.+ +.+    .+++.+.. ..+  |..+...... +.+..  -+
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4678999987 9999999999999999 6666544332 222    22333432 222  2222111111 12111  13


Q ss_pred             CccEEEEccCCh-------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          269 GADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       269 ~~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ++|++|.++|..                         ..++.+++.++.+ |+++.++..
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~  141 (245)
T PRK12937         83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQG-GRIINLSTS  141 (245)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccC-cEEEEEeec
Confidence            689999988841                         1123444555665 888888753

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.89  E-value=0.1  Score=46.26  Aligned_cols=92  Identities=23%  Similarity=0.218  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCC--EEEEEcCC----chH--------HHHHHHcCCCeEEeCCCCCchhHHHHh
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI----SEK--------FEIGKRFGVTEFVNSKNCGDKSIIIDM  265 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~--~vi~~~~~----~~~--------~~~~~~lg~~~vv~~~~~~~~~~i~~~  265 (385)
                      -++.+|+|+|+|+.|..++..+...|++  +++.++++    .+|        .++++.++... .+   .+    +.+.
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~~---~~----l~~~   94 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-TG---GT----LKEA   94 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-cc---CC----HHHH
Confidence            4678999999999999999999999997  89999988    443        33445443211 11   01    1111


Q ss_pred             hCCCccEEEEccCChHHHHHHHHHhccCCceEEEec
Q 016660          266 TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       266 ~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .. ++|++|.+++....-.+.++.+.++ ..++.+.
T Consensus        95 l~-~~dvlIgaT~~G~~~~~~l~~m~~~-~ivf~ls  128 (226)
T cd05311          95 LK-GADVFIGVSRPGVVKKEMIKKMAKD-PIVFALA  128 (226)
T ss_pred             Hh-cCCEEEeCCCCCCCCHHHHHhhCCC-CEEEEeC
Confidence            12 4899999997433224667777775 5555444

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.88  E-value=0.028  Score=51.40  Aligned_cols=75  Identities=28%  Similarity=0.303  Sum_probs=52.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCe-EEeCCCCCchhHHHHhhCC-CccEEEEc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE-FVNSKNCGDKSIIIDMTDG-GADYCFEC  276 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~-vv~~~~~~~~~~i~~~~~g-~~d~vid~  276 (385)
                      .++.+++|+|+|+.+.+++.-++..|+++|+++.++.+|.+.+.+ ++... .+....      ...+... .+|++|++
T Consensus       124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~------~~~~~~~~~~dliINa  197 (283)
T COG0169         124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAA------LADLEGLEEADLLINA  197 (283)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccc------ccccccccccCEEEEC
Confidence            357999999999999999999999998899999999998776654 33211 011111      0011111 48999998


Q ss_pred             cCCh
Q 016660          277 VGLA  280 (385)
Q Consensus       277 ~g~~  280 (385)
                      ++..
T Consensus       198 Tp~G  201 (283)
T COG0169         198 TPVG  201 (283)
T ss_pred             CCCC
Confidence            8754

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.88  E-value=0.13  Score=48.03  Aligned_cols=95  Identities=11%  Similarity=0.084  Sum_probs=60.9

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE-eCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv-~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +|||+|+ |-+|...+..+...|+ +|+++.++.++...+...+++.+. |..+   ...+..... ++|+||++++...
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d---~~~l~~al~-g~d~Vi~~~~~~~   76 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVYGDLSL---PETLPPSFK-GVTAIIDASTSRP   76 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEECCCCC---HHHHHHHHC-CCCEEEECCCCCC
Confidence            6999997 9999999999988999 899888887766555555654332 2222   222333333 5899999876421


Q ss_pred             ------------HHHHHHHHhccC-CceEEEeccC
Q 016660          282 ------------LVQEAYACCRKG-WGKTIVLGVD  303 (385)
Q Consensus       282 ------------~~~~~~~~l~~~-~G~~v~~g~~  303 (385)
                                  ....+++.++.. -.+++.++..
T Consensus        77 ~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~  111 (317)
T CHL00194         77 SDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL  111 (317)
T ss_pred             CCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence                        112344444443 1378887764

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=95.86  E-value=0.097  Score=45.88  Aligned_cols=104  Identities=18%  Similarity=0.222  Sum_probs=69.7

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHH----cCCCe-EEeCCCCCchhHHHHhhCCC
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTE-FVNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~~-vv~~~~~~~~~~i~~~~~g~  269 (385)
                      .++.....+||=+|.+ +|..++++|..+. -.+++.++.++++.+.+++    .|... +.-....+..+.+.+...+.
T Consensus        54 L~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~  132 (219)
T COG4122          54 LARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGS  132 (219)
T ss_pred             HHHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCC
Confidence            4556678888888863 3777888888775 2389999999999887764    67654 22111112333333333458


Q ss_pred             ccEEE-EccC--ChHHHHHHHHHhccCCceEEEec
Q 016660          270 ADYCF-ECVG--LASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       270 ~d~vi-d~~g--~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ||+|| |+.-  .+..++.+++++++| |.++.=.
T Consensus       133 fDliFIDadK~~yp~~le~~~~lLr~G-Gliv~DN  166 (219)
T COG4122         133 FDLVFIDADKADYPEYLERALPLLRPG-GLIVADN  166 (219)
T ss_pred             ccEEEEeCChhhCHHHHHHHHHHhCCC-cEEEEee
Confidence            99995 5543  356689999999997 8777543

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.82  E-value=0.076  Score=47.20  Aligned_cols=78  Identities=22%  Similarity=0.195  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeE---EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v---v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.+|||+|+ |.+|...++.+...|+ +|+++.+++++.+..    ++.+....   .|..+...... +....  -+.
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA   82 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            3568999997 9999999999988999 699998887764432    33443322   23333211111 22211  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|.++|.
T Consensus        83 id~vi~~ag~   92 (246)
T PRK05653         83 LDILVNNAGI   92 (246)
T ss_pred             CCEEEECCCc
Confidence            8999999865

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=95.82  E-value=0.067  Score=48.43  Aligned_cols=78  Identities=23%  Similarity=0.254  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCC-eE--EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EF--VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~-~v--v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+.+++++++.+.+.+ ++.. ..  .|..+...... +....  .+.+|+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   83 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC   83 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            4678999987 9999999999999999 79988888877665543 3322 12  23333111111 22221  236899


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        84 li~~ag~   90 (263)
T PRK06200         84 FVGNAGI   90 (263)
T ss_pred             EEECCCC
Confidence            9999873

>PRK06181 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.072  Score=48.18  Aligned_cols=76  Identities=21%  Similarity=0.258  Sum_probs=47.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeEEeCCCCCchhHHH----HhhC--CCcc
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSIII----DMTD--GGAD  271 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~----~~~~--g~~d  271 (385)
                      .++||.|+ |.+|..+++.+...|+ +|+++++++++.+.+    +..+....+..-+......+.    ....  +++|
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            57999987 9999999999989999 899998887654432    223432211111211222222    2111  3689


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      +||.+.|.
T Consensus        81 ~vi~~ag~   88 (263)
T PRK06181         81 ILVNNAGI   88 (263)
T ss_pred             EEEECCCc
Confidence            99999874

>PRK08219 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.1  Score=45.86  Aligned_cols=74  Identities=16%  Similarity=0.120  Sum_probs=47.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCCCchhHHHHhhCC--CccEEEEccC
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSIIIDMTDG--GADYCFECVG  278 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~~~~~~i~~~~~g--~~d~vid~~g  278 (385)
                      .++||.|+ |.+|...+..+... + +|++++++.++.+.+.+ +...+++.. +......+.+....  +.|++|.++|
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~~~~~~~~id~vi~~ag   80 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAELPGATPFPV-DLTDPEAIAAAVEQLGRLDVLVHNAG   80 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHhccceEEec-CCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            57999987 99999888877666 6 79999888776554442 211222221 21223334444443  6999999987


Q ss_pred             C
Q 016660          279 L  279 (385)
Q Consensus       279 ~  279 (385)
                      .
T Consensus        81 ~   81 (227)
T PRK08219         81 V   81 (227)
T ss_pred             c
Confidence            5

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.075  Score=47.99  Aligned_cols=78  Identities=18%  Similarity=0.209  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc-----CCC-eE--EeCCCCCchhH-HHHhh--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVT-EF--VNSKNCGDKSI-IIDMT--D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l-----g~~-~v--v~~~~~~~~~~-i~~~~--~  267 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+.+++++++.+.+. ++     +.. .+  .|..+...... +....  -
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4678999987 9999999999989999 7888888776655332 22     222 12  23322111111 21111  1


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +.+|++|++.|.
T Consensus        85 g~id~li~~ag~   96 (260)
T PRK07063         85 GPLDVLVNNAGI   96 (260)
T ss_pred             CCCcEEEECCCc
Confidence            369999999884

>PRK06196 oxidoreductase; Provisional

Probab=95.81  E-value=0.051  Score=50.80  Aligned_cols=78  Identities=15%  Similarity=0.174  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeE--EeCCCCCchhH-HHHhhC--CCccEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF--VNSKNCGDKSI-IIDMTD--GGADYC  273 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~v--v~~~~~~~~~~-i~~~~~--g~~d~v  273 (385)
                      .+.+|||.|+ |++|..++..+...|+ +|+++++++++.+.+ .++..-.+  .|..+...... +.....  +++|++
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l  103 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDIL  103 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            4678999997 9999999998888999 888888887765533 22321122  23333111111 222222  479999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      |+++|.
T Consensus       104 i~nAg~  109 (315)
T PRK06196        104 INNAGV  109 (315)
T ss_pred             EECCCC
Confidence            999873

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.79  E-value=0.075  Score=47.81  Aligned_cols=78  Identities=19%  Similarity=0.210  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCe-EE--eCCCCCchhH-HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-FV--NSKNCGDKSI-IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~-vv--~~~~~~~~~~-i~~~~~--g~  269 (385)
                      ++.++||.|+ |++|...+..+...|+ +|+.+++++++.+.+.    +.+.+. .+  |..+...... +.+...  +.
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG   83 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            4678999987 9999999999888999 7888888877655332    234322 22  3322111111 222211  36


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|.++|.
T Consensus        84 id~li~~ag~   93 (254)
T PRK07478         84 LDIAFNNAGT   93 (254)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.79  E-value=0.035  Score=57.33  Aligned_cols=77  Identities=26%  Similarity=0.283  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch---------------------HHHHHHHcCCCeEEeCCCCCch
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---------------------KFEIGKRFGVTEFVNSKNCGDK  259 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~---------------------~~~~~~~lg~~~vv~~~~~~~~  259 (385)
                      .+++|+|+|+|+.|+.+++.++..|+ +|++++..+.                     +.++++++|++..++..-... 
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-  386 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD-  386 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc-
Confidence            48999999999999999999999999 7888876652                     456778889876555432111 


Q ss_pred             hHHHHhhCCCccEEEEccCCh
Q 016660          260 SIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       260 ~~i~~~~~g~~d~vid~~g~~  280 (385)
                      ..+..+. .++|.||.++|..
T Consensus       387 ~~~~~l~-~~~DaV~latGa~  406 (639)
T PRK12809        387 ITFSDLT-SEYDAVFIGVGTY  406 (639)
T ss_pred             CCHHHHH-hcCCEEEEeCCCC
Confidence            1122222 2699999999874

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=95.78  E-value=0.042  Score=47.65  Aligned_cols=97  Identities=18%  Similarity=0.275  Sum_probs=61.1

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc----CCCeEEeCCCCCchhHHHHh-hCCCc
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSIIIDM-TDGGA  270 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~~vv~~~~~~~~~~i~~~-~~g~~  270 (385)
                      .....++.+||-+|+|. |..+..+|+. |. +|++++.+++-++.+++.    +...+ .....+    +..+ ..+.|
T Consensus        25 ~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v-~~~~~d----~~~~~~~~~f   96 (197)
T PRK11207         25 AVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDNL-HTAVVD----LNNLTFDGEY   96 (197)
T ss_pred             hcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCcc-eEEecC----hhhCCcCCCc
Confidence            34455678899999866 7777788875 77 899999998877665542    32211 110000    1111 12369


Q ss_pred             cEEEEccCC--------hHHHHHHHHHhccCCceEEEec
Q 016660          271 DYCFECVGL--------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       271 d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      |+|+.....        ...+..+.+.|+++ |.++.+.
T Consensus        97 D~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~~~~~~  134 (197)
T PRK11207         97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPG-GYNLIVA  134 (197)
T ss_pred             CEEEEecchhhCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence            999875431        24467888899997 9865543

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.081  Score=47.52  Aligned_cols=78  Identities=22%  Similarity=0.259  Sum_probs=49.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCC-eE--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+.+++++++.+.+    ++.+.. ..  .|..+...... +....  -+.
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   84 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR   84 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            4688999997 9999999988888899 799998887664432    233432 12  23322111111 11111  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|.+.|.
T Consensus        85 id~li~~ag~   94 (253)
T PRK06172         85 LDYAFNNAGI   94 (253)
T ss_pred             CCEEEECCCC
Confidence            8999998874

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.067  Score=48.48  Aligned_cols=78  Identities=22%  Similarity=0.233  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-----cCCCeE----EeCCCCCchhH-HHHhh--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVTEF----VNSKNCGDKSI-IIDMT--D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-----lg~~~v----v~~~~~~~~~~-i~~~~--~  267 (385)
                      .+.++||.|+ +++|...++.+...|+ +|+.+++++++.+.+.+     .+...+    .|..+...... +....  -
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            4678999987 9999999999999999 79999888776553321     111121    23333211111 22222  1


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +.+|++|+++|.
T Consensus        86 g~id~li~~Ag~   97 (265)
T PRK07062         86 GGVDMLVNNAGQ   97 (265)
T ss_pred             CCCCEEEECCCC
Confidence            368999999984

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=95.77  E-value=0.061  Score=48.56  Aligned_cols=78  Identities=26%  Similarity=0.253  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH---cCCCe---EEeCCCCCchhH-HHHhh--CCCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVTE---FVNSKNCGDKSI-IIDMT--DGGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~---lg~~~---vv~~~~~~~~~~-i~~~~--~g~~  270 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+.+++++...+..++   .+.+.   ..|..+...... +.+..  .+++
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999987 9999999999988999 88888877543333333   34332   234433211111 22222  1369


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|+++|.
T Consensus        86 d~lv~nAg~   94 (260)
T PRK12823         86 DVLINNVGG   94 (260)
T ss_pred             eEEEECCcc
Confidence            999999873

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.77  E-value=0.076  Score=47.79  Aligned_cols=78  Identities=23%  Similarity=0.296  Sum_probs=48.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH--HHHHHHcCCCe-E--EeCCCCCchhH-HHHhh--CCCcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVTE-F--VNSKNCGDKSI-IIDMT--DGGAD  271 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~--~~~~~~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~~d  271 (385)
                      ++.++||.|+ +++|...++.+...|+ +|+.+++++..  .+..++.+.+. +  .|..+...... +.+..  -+++|
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD   85 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHID   85 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4788999987 9999999999999999 78877664321  22334455432 1  33333221111 22221  23699


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      +++++.|.
T Consensus        86 ~lv~~ag~   93 (251)
T PRK12481         86 ILINNAGI   93 (251)
T ss_pred             EEEECCCc
Confidence            99998874

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.086  Score=47.18  Aligned_cols=78  Identities=24%  Similarity=0.241  Sum_probs=48.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-H---cCCC-e--EEeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R---FGVT-E--FVNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~---lg~~-~--vv~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+. .   .+.. .  ..|..+...... .....  .++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGG   83 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            4678999997 9999999998888999 8999988766543322 2   2222 1  123333111111 11111  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|+||+++|.
T Consensus        84 id~vi~~ag~   93 (250)
T PRK07774         84 IDYLVNNAAI   93 (250)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.13  Score=47.15  Aligned_cols=76  Identities=22%  Similarity=0.300  Sum_probs=46.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-H---HcCCC-eE--EeCCCCCchhH-HHHhh-CCCccE
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K---RFGVT-EF--VNSKNCGDKSI-IIDMT-DGGADY  272 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~---~lg~~-~v--v~~~~~~~~~~-i~~~~-~g~~d~  272 (385)
                      +.++||.|+|++|..++..+. .|+ +|+.+++++++.+.+ +   ..|.. .+  .|..+...... +.... .+++|+
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            457888899999999888885 798 899888877655432 2   22432 12  23333211111 22211 146999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        80 li~nAG~   86 (275)
T PRK06940         80 LVHTAGV   86 (275)
T ss_pred             EEECCCc
Confidence            9999985

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.079  Score=47.97  Aligned_cols=78  Identities=24%  Similarity=0.351  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-c--CCC-eEE--eCCCCCchhHHHHhh--CCCcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F--GVT-EFV--NSKNCGDKSIIIDMT--DGGAD  271 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-l--g~~-~vv--~~~~~~~~~~i~~~~--~g~~d  271 (385)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+ +  +.. +.+  |..+......+.+..  .+.+|
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id   82 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN   82 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence            4678999987 9999999998888999 79999888776654432 2  211 222  222211111111111  24689


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++|.++|.
T Consensus        83 ~lv~~ag~   90 (263)
T PRK09072         83 VLINNAGV   90 (263)
T ss_pred             EEEECCCC
Confidence            99999875

>PRK00536 speE spermidine synthase; Provisional

Probab=95.73  E-value=0.051  Score=49.11  Aligned_cols=99  Identities=12%  Similarity=-0.059  Sum_probs=65.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc-CC-CeEEeCCCCCchhHHHHhhCCCccEE-EEc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV-TEFVNSKNCGDKSIIIDMTDGGADYC-FEC  276 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-g~-~~vv~~~~~~~~~~i~~~~~g~~d~v-id~  276 (385)
                      ...++|||+|+|- |..+-.++|+-.  +|+.++.+++-.+.++++ .. ...++.........+.+...+.||+| +|+
T Consensus        71 ~~pk~VLIiGGGD-Gg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs  147 (262)
T PRK00536         71 KELKEVLIVDGFD-LELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCeEEEEcCCc-hHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcC
Confidence            3458899998765 556778888863  899999999888888872 21 00111100000001222223479988 577


Q ss_pred             cCChHHHHHHHHHhccCCceEEEecc
Q 016660          277 VGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       277 ~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .-+++..+.+.++|+++ |.+|.-+.
T Consensus       148 ~~~~~fy~~~~~~L~~~-Gi~v~Qs~  172 (262)
T PRK00536        148 EPDIHKIDGLKRMLKED-GVFISVAK  172 (262)
T ss_pred             CCChHHHHHHHHhcCCC-cEEEECCC
Confidence            77777788999999997 99987754

>PRK01581 speE spermidine synthase; Validated

Probab=95.72  E-value=0.18  Score=47.61  Aligned_cols=98  Identities=15%  Similarity=0.091  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC-----------CCeE-EeCCCCCchhHHHHhhC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-----------VTEF-VNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg-----------~~~v-v~~~~~~~~~~i~~~~~  267 (385)
                      ....+|||+|+| .|..+..+++..+..+|++++.+++-.++++++.           ..++ +-..+  ....+ ....
T Consensus       149 ~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D--a~~fL-~~~~  224 (374)
T PRK01581        149 IDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD--AKEFL-SSPS  224 (374)
T ss_pred             CCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc--HHHHH-HhcC
Confidence            445689999975 3667778888776679999999999999988631           1111 00111  11112 2233


Q ss_pred             CCccEEEEccCC-----------hHHHHHHHHHhccCCceEEEecc
Q 016660          268 GGADYCFECVGL-----------ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       268 g~~d~vid~~g~-----------~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +.||+||--...           .+.++.+.+.|+++ |.++.-..
T Consensus       225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs~  269 (374)
T PRK01581        225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTED-GAFVCQSN  269 (374)
T ss_pred             CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence            479998633221           23577899999997 99887654

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.72  E-value=0.21  Score=43.45  Aligned_cols=82  Identities=26%  Similarity=0.333  Sum_probs=56.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      -.|.+|+|.|.|.+|..+++.+...|+ +|+++++++++.+.+.+ +|+. .++..+         +.....|+++-|..
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~---------l~~~~~Dv~vp~A~   94 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT-VVAPEE---------IYSVDADVFAPCAL   94 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE-EEcchh---------hccccCCEEEeccc
Confidence            467899999999999999999999999 89999988887666544 4653 333322         11115889987665


Q ss_pred             ChHHHHHHHHHhcc
Q 016660          279 LASLVQEAYACCRK  292 (385)
Q Consensus       279 ~~~~~~~~~~~l~~  292 (385)
                      ....-...++.++.
T Consensus        95 ~~~I~~~~~~~l~~  108 (200)
T cd01075          95 GGVINDDTIPQLKA  108 (200)
T ss_pred             ccccCHHHHHHcCC
Confidence            44323344555544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.71  E-value=0.083  Score=47.55  Aligned_cols=78  Identities=23%  Similarity=0.293  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe-EE--eCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-vv--~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.++||.|+ |.+|...++.+...|+ +|+.+++++++.+.+    ++.|... .+  |..+...... +....  -+.
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP   87 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            5788999987 9999999998888899 899888887655432    2223221 22  3333111111 21111  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|++.|.
T Consensus        88 ~d~li~~ag~   97 (255)
T PRK07523         88 IDILVNNAGM   97 (255)
T ss_pred             CCEEEECCCC
Confidence            8999999985

>PRK00811 spermidine synthase; Provisional

Probab=95.68  E-value=0.08  Score=48.75  Aligned_cols=97  Identities=12%  Similarity=0.144  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC------C---CeE-EeCCCCCchhHHHHhhCCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG------V---TEF-VNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg------~---~~v-v~~~~~~~~~~i~~~~~g~  269 (385)
                      ...++||++|+|. |..+..+++..+.++|++++.+++-.+.+++.-      .   .++ +-..+  ....+.. ..+.
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D--a~~~l~~-~~~~  150 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD--GIKFVAE-TENS  150 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc--hHHHHhh-CCCc
Confidence            3467899999866 667777888777779999999999888887631      1   111 11111  1111222 3347


Q ss_pred             ccEEEEccCC----------hHHHHHHHHHhccCCceEEEec
Q 016660          270 ADYCFECVGL----------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       270 ~d~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ||+||--...          .+.++.+.+.|+++ |.++...
T Consensus       151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g-Gvlv~~~  191 (283)
T PRK00811        151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED-GIFVAQS  191 (283)
T ss_pred             ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEEeC
Confidence            9999743211          33467889999997 9988753

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=95.68  E-value=0.11  Score=47.61  Aligned_cols=86  Identities=19%  Similarity=0.227  Sum_probs=56.9

Q ss_pred             EEEEEcCCHHHHHH-HHHHHHcCCCEEEEEcCCchH--HHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          204 TVVIFGLGSIGLAV-AEGARLCGATRIIGVDVISEK--FEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~g~vG~~a-i~la~~~G~~~vi~~~~~~~~--~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      +|.|+|+|.+|... ..+++..+.+-+-+++.++++  +++++++|.....+  +      +..+... .+|+||++++.
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~--~------~e~ll~~~dIDaV~iaTp~   74 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAE--G------VDGLLANPDIDIVFDATSA   74 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEEC--C------HHHHhcCCCCCEEEECCCc
Confidence            58899999999865 566666677333344555543  56778888764432  1      1222223 79999999999


Q ss_pred             hHHHHHHHHHhccCCceEE
Q 016660          280 ASLVQEAYACCRKGWGKTI  298 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v  298 (385)
                      ....+.+..++..| -.++
T Consensus        75 ~~H~e~a~~al~aG-k~VI   92 (285)
T TIGR03215        75 KAHARHARLLAELG-KIVI   92 (285)
T ss_pred             HHHHHHHHHHHHcC-CEEE
Confidence            98777777777774 4443

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK08263 short chain dehydrogenase; Provisional

Probab=95.67  E-value=0.18  Score=46.00  Aligned_cols=77  Identities=16%  Similarity=0.110  Sum_probs=48.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCC-eEE--eCCCCCchhH-HHHhh--CCCccEE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EFV--NSKNCGDKSI-IIDMT--DGGADYC  273 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~-~vv--~~~~~~~~~~-i~~~~--~g~~d~v  273 (385)
                      +.+|||.|+ |.+|...++.+...|+ +|+.+++++++.+.+.+ ++.. .++  |..+...... +....  -+++|++
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIV   81 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            457999987 9999999988888898 79998888777655443 2322 222  2222111111 22211  1368999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      |.+.|.
T Consensus        82 i~~ag~   87 (275)
T PRK08263         82 VNNAGY   87 (275)
T ss_pred             EECCCC
Confidence            999885

>PLN02366 spermidine synthase

Probab=95.67  E-value=0.087  Score=48.98  Aligned_cols=99  Identities=16%  Similarity=0.156  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc-CC-------CeEEeCCCCCchhHHHHhhCCCcc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV-------TEFVNSKNCGDKSIIIDMTDGGAD  271 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-g~-------~~vv~~~~~~~~~~i~~~~~g~~d  271 (385)
                      ...++||++|+|. |.++..++++-+..+|++++.+++-.+.++++ ..       .++ .....+....+....++.||
T Consensus        90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv-~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRV-NLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCce-EEEEChHHHHHhhccCCCCC
Confidence            4578899998866 66677888887777999999988878887763 11       111 00000111112222234799


Q ss_pred             EEEEccCC----------hHHHHHHHHHhccCCceEEEec
Q 016660          272 YCFECVGL----------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       272 ~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +||--...          .+.++.+.++|+++ |.++.-+
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg-Gvlv~q~  206 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPG-GVVCTQA  206 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEECc
Confidence            98642222          24477899999997 9997654

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.67  E-value=0.093  Score=47.21  Aligned_cols=78  Identities=17%  Similarity=0.155  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC---eEEeCCCCCchhH-HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSI-IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vv~~~~~~~~~~-i~~~~~--g~  269 (385)
                      ++.++||.|+ |++|...+..+...|+ +|+++++++++.+.+.+    .+..   ...|..+...... +.....  +.
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR   82 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            5678999987 9999999999989999 89999888776543322    2332   1233333111111 222211  36


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|.+.|.
T Consensus        83 ~d~vi~~ag~   92 (258)
T PRK07890         83 VDALVNNAFR   92 (258)
T ss_pred             ccEEEECCcc
Confidence            8999998874

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.65  E-value=0.081  Score=47.78  Aligned_cols=75  Identities=23%  Similarity=0.249  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-c----CCC-eEE--eCCCCCchhHHHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GVT-EFV--NSKNCGDKSIIIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-l----g~~-~vv--~~~~~~~~~~i~~~~~--g~  269 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.+ +    +.. .++  |..+   ...+..+..  +.
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~---~~~~~~~~~~~g~   81 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS---PEAREQLAAEAGD   81 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC---HHHHHHHHHHhCC
Confidence            4689999987 9999999998888999 89999888776554321 2    322 222  2222   222333222  36


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|++.|.
T Consensus        82 id~lv~~ag~   91 (259)
T PRK06125         82 IDILVNNAGA   91 (259)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=95.65  E-value=0.11  Score=45.54  Aligned_cols=99  Identities=20%  Similarity=0.234  Sum_probs=61.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeEE-eC------CCCCc---hhHHHHhh--
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFV-NS------KNCGD---KSIIIDMT--  266 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vv-~~------~~~~~---~~~i~~~~--  266 (385)
                      .++.+||+.|+|. |.-++.||. .|+ .|++++.++.-++.+ ++.+..... +.      .....   ...+..+.  
T Consensus        33 ~~~~rvLd~GCG~-G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~  109 (213)
T TIGR03840        33 PAGARVFVPLCGK-SLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA  109 (213)
T ss_pred             CCCCeEEEeCCCc-hhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence            5678999999876 777777775 699 899999999988864 333321100 00      00000   00011111  


Q ss_pred             -CCCccEEEEccCC--------hHHHHHHHHHhccCCceEEEecc
Q 016660          267 -DGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       267 -~g~~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                       .+.||.|+|+..-        ...++.+.++|+++ |++++++.
T Consensus       110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg-G~~ll~~~  153 (213)
T TIGR03840       110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG-ARQLLITL  153 (213)
T ss_pred             cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC-CeEEEEEE
Confidence             1358999997542        23477899999997 98766654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.65  E-value=0.035  Score=46.80  Aligned_cols=100  Identities=20%  Similarity=0.193  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC-CCC---------------C-chhHHH
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS-KNC---------------G-DKSIII  263 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~-~~~---------------~-~~~~i~  263 (385)
                      +..+|+|+|+|.+|+.|+++|+.+|+ +++..+..+++.+..+.++...+... .+.               . ....+.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            34779999999999999999999999 89999999888888888887654331 110               0 111122


Q ss_pred             HhhCCCccEEEEcc--CC---hHH-HHHHHHHhccCCceEEEeccC
Q 016660          264 DMTDGGADYCFECV--GL---ASL-VQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       264 ~~~~g~~d~vid~~--g~---~~~-~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +... .+|+||-+.  .+   +.. -++.++.|+++ ..++.++..
T Consensus        98 ~~i~-~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvDis~D  141 (168)
T PF01262_consen   98 EFIA-PADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVDISCD  141 (168)
T ss_dssp             HHHH-H-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEETTGG
T ss_pred             HHHh-hCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEEEEec
Confidence            2221 478888532  12   221 25678888886 777777653

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.65  E-value=0.11  Score=42.91  Aligned_cols=95  Identities=22%  Similarity=0.210  Sum_probs=59.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCe-EEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTE-FVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~-vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      ..+.+++|+|+|.+|...++.+...|...|++++++.++.+. +++++... .....+  .    .+. -.++|+|+.|+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~--~----~~~-~~~~Dvvi~~~   89 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLD--L----EEL-LAEADLIINTT   89 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecc--h----hhc-cccCCEEEeCc
Confidence            457889999999999999998888864489999888777654 45555421 011111  1    111 13689999999


Q ss_pred             CChHH----HHHHHHHhccCCceEEEecc
Q 016660          278 GLASL----VQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       278 g~~~~----~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +....    .......++++ ..++.++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~-~~v~D~~~  117 (155)
T cd01065          90 PVGMKPGDELPLPPSLLKPG-GVVYDVVY  117 (155)
T ss_pred             CCCCCCCCCCCCCHHHcCCC-CEEEEcCc
Confidence            87652    11222345564 55555654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.64  E-value=0.035  Score=54.77  Aligned_cols=94  Identities=13%  Similarity=0.125  Sum_probs=61.8

Q ss_pred             hhccCCCCCEEE----EEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eEEeCCCCCchhHHHHhhCC
Q 016660          195 RTANVEVGSTVV----IFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       195 ~~~~~~~~~~Vl----I~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vv~~~~~~~~~~i~~~~~g  268 (385)
                      ...++++++.+|    |+|+ |++|.+++|+++..|+ .|+++...+.+....+..+.. .++|.....+...+....  
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~--  103 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATGITDPADLKALY--  103 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCCCCCHHHHHHHH--
Confidence            345677888887    7765 9999999999999999 888887665544333334444 355555533333222221  


Q ss_pred             CccEEEEccCChHHHHHHHHHhccCCceEEEeccCC
Q 016660          269 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       269 ~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                                  ......++.+.++ |+++.++...
T Consensus       104 ------------~~~~~~l~~l~~~-griv~i~s~~  126 (450)
T PRK08261        104 ------------EFFHPVLRSLAPC-GRVVVLGRPP  126 (450)
T ss_pred             ------------HHHHHHHHhccCC-CEEEEEcccc
Confidence                        2356677788886 8888887643

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.63  E-value=0.09  Score=46.98  Aligned_cols=77  Identities=21%  Similarity=0.263  Sum_probs=48.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH----HHHcCCC-eEEeCCCCCchhHHHHhhC------C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFGVT-EFVNSKNCGDKSIIIDMTD------G  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~----~~~lg~~-~vv~~~~~~~~~~i~~~~~------g  268 (385)
                      .+.+|||.|+ |.+|...+..+...|+ +|++++++.++...    +++.+.. .++.. +......+.+...      +
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-Dl~~~~~~~~~~~~~~~~~~   82 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQV-DVRDRAALKAAVAAGVEDFG   82 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC-CCCCHHHHHHHHHHHHHHhC
Confidence            4678999997 9999999988888899 89999887654432    2233322 12211 1122222222221      3


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      .+|++|.+.|.
T Consensus        83 ~~d~vi~~ag~   93 (251)
T PRK12826         83 RLDILVANAGI   93 (251)
T ss_pred             CCCEEEECCCC
Confidence            68999998864

>PRK07832 short chain dehydrogenase; Provisional

Probab=95.63  E-value=0.15  Score=46.52  Aligned_cols=75  Identities=19%  Similarity=0.246  Sum_probs=47.9

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe----EEeCCCCCchhH-HHHhh--CCCcc
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE----FVNSKNCGDKSI-IIDMT--DGGAD  271 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~----vv~~~~~~~~~~-i~~~~--~g~~d  271 (385)
                      ++||+|+ |++|..+++.+...|+ +|+.+++++++.+..    +..+...    ..|..+...... +.+..  .+++|
T Consensus         2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD   80 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            6899987 9999999999888999 788888877654432    2234321    234444222111 11211  13689


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++|++.|.
T Consensus        81 ~lv~~ag~   88 (272)
T PRK07832         81 VVMNIAGI   88 (272)
T ss_pred             EEEECCCC
Confidence            99999974

>PRK06953 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.069  Score=47.00  Aligned_cols=76  Identities=20%  Similarity=0.200  Sum_probs=51.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      .++||+|+ |.+|...++.+...|+ +|+.+++++++.+.++..+.. ...|..+......+.....+ ++|++|.+.|.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            36899987 9999998888878899 788898888877777666643 22344432221112222233 69999998875

>PRK08589 short chain dehydrogenase; Validated

Probab=95.60  E-value=0.085  Score=48.13  Aligned_cols=78  Identities=23%  Similarity=0.237  Sum_probs=48.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH---cCCC-e--EEeCCCCCchhH-HHHhh--CCCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVT-E--FVNSKNCGDKSI-IIDMT--DGGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~---lg~~-~--vv~~~~~~~~~~-i~~~~--~g~~  270 (385)
                      ++.++||.|+ +++|...++.+...|+ +|++++++++..+.+++   .+.. .  ..|..+...... +....  -+.+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            4678999987 9999999988888999 88888887333333333   2322 1  234333211111 22221  1368


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|++.|.
T Consensus        84 d~li~~Ag~   92 (272)
T PRK08589         84 DVLFNNAGV   92 (272)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.60  E-value=0.1  Score=47.00  Aligned_cols=78  Identities=22%  Similarity=0.323  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC-eE--EeCCCCCchhH-HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSI-IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~v--v~~~~~~~~~~-i~~~~~--g~  269 (385)
                      ++.++||.|+ |.+|...++.+...|+ +|+.++++.++.+.+.    +.+.. ..  .|..+...... +.+...  ++
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~   89 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH   89 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5688999987 9999999999988999 8999988877655433    22322 12  23333111111 122211  36


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|.+.|.
T Consensus        90 id~vi~~ag~   99 (259)
T PRK08213         90 VDILVNNAGA   99 (259)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.58  E-value=0.083  Score=44.50  Aligned_cols=93  Identities=14%  Similarity=0.248  Sum_probs=61.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC--CeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      +|.|+|+ |-+|...++=|+.+|. .|+++.++++|+...+..-+  ..+++...      +.+.. -|+|+||++.|..
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i~q~Difd~~~------~a~~l-~g~DaVIsA~~~~   73 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGVTILQKDIFDLTS------LASDL-AGHDAVISAFGAG   73 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhccccccceeecccccChhh------hHhhh-cCCceEEEeccCC
Confidence            5788998 9999999999999999 89999999998765422211  11222211      11111 2799999998865


Q ss_pred             ---------HHHHHHHHHhcc-CCceEEEeccCC
Q 016660          281 ---------SLVQEAYACCRK-GWGKTIVLGVDQ  304 (385)
Q Consensus       281 ---------~~~~~~~~~l~~-~~G~~v~~g~~~  304 (385)
                               ...+.++..++. +--|+..+|..+
T Consensus        74 ~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG  107 (211)
T COG2910          74 ASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG  107 (211)
T ss_pred             CCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence                     113345666665 224788887643

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.098  Score=47.47  Aligned_cols=77  Identities=18%  Similarity=0.230  Sum_probs=48.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCC-eE--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+.+++++++.+..    .+.+.. .+  +|..+...... +....  .++
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~   86 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP   86 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999987 9999999999989999 899998877664432    222322 12  23333111111 22221  136


Q ss_pred             ccEEEEccC
Q 016660          270 ADYCFECVG  278 (385)
Q Consensus       270 ~d~vid~~g  278 (385)
                      +|++|.+.|
T Consensus        87 iD~vi~~ag   95 (264)
T PRK07576         87 IDVLVSGAA   95 (264)
T ss_pred             CCEEEECCC
Confidence            899998876

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.53  E-value=0.22  Score=44.29  Aligned_cols=103  Identities=19%  Similarity=0.244  Sum_probs=73.5

Q ss_pred             hhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhCC
Q 016660          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       194 ~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~g  268 (385)
                      ....++.+|++|+=.|.|+ |.+++.||++.|. .+|+..+..++..+.+++    +|....+.....+    +.+...+
T Consensus        87 ~~~~gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D----v~~~~~~  161 (256)
T COG2519          87 VARLGISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD----VREGIDE  161 (256)
T ss_pred             HHHcCCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecc----ccccccc
Confidence            3567899999999888776 8889999998875 489999998888776653    4543312111111    3333333


Q ss_pred             -CccEE-EEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          269 -GADYC-FECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       269 -~~d~v-id~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                       .||.| +|.----..++.+.+.|+++ |.++++.-
T Consensus       162 ~~vDav~LDmp~PW~~le~~~~~Lkpg-g~~~~y~P  196 (256)
T COG2519         162 EDVDAVFLDLPDPWNVLEHVSDALKPG-GVVVVYSP  196 (256)
T ss_pred             cccCEEEEcCCChHHHHHHHHHHhCCC-cEEEEEcC
Confidence             68877 56655557789999999997 99998864

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.53  E-value=0.24  Score=44.74  Aligned_cols=77  Identities=16%  Similarity=0.258  Sum_probs=45.8

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCCc---hHHHH-HHHc-CCC-eE--EeCCCCCchhH-HHHhhC-
Q 016660          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS---EKFEI-GKRF-GVT-EF--VNSKNCGDKSI-IIDMTD-  267 (385)
Q Consensus       201 ~~~~VlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~---~~~~~-~~~l-g~~-~v--v~~~~~~~~~~-i~~~~~-  267 (385)
                      .+.++||.|+   +++|...++.+...|+ +|+.+.++.   ++.+. ..++ +.. ..  .|..+...... +..... 
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            4678999986   5999999888888999 788876543   23332 2333 221 11  23333211111 222222 


Q ss_pred             -CCccEEEEccC
Q 016660          268 -GGADYCFECVG  278 (385)
Q Consensus       268 -g~~d~vid~~g  278 (385)
                       |.+|++++++|
T Consensus        85 ~g~ld~lv~nag   96 (257)
T PRK08594         85 VGVIHGVAHCIA   96 (257)
T ss_pred             CCCccEEEECcc
Confidence             46999999876

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.53  E-value=0.22  Score=44.76  Aligned_cols=101  Identities=14%  Similarity=0.128  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc--CCCeE-EeCCCCCchhHHHHhhCCCccEEEE
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF--GVTEF-VNSKNCGDKSIIIDMTDGGADYCFE  275 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l--g~~~v-v~~~~~~~~~~i~~~~~g~~d~vid  275 (385)
                      ..+.+|||+|+ |.+|...++.+...|+ +|+++.+++++.......  ++..+ .|..+  ....+.+....++|+||.
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~l~~~~~~~~d~vi~   91 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKTSLPQDPSLQIVRADVTE--GSDKLVEAIGDDSDAVIC   91 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhcccCCceEEEEeeCCC--CHHHHHHHhhcCCCEEEE
Confidence            34678999997 9999999988888898 788887877765433211  22211 23333  112233333226999998


Q ss_pred             ccCChH-------------HHHHHHHHhccC-CceEEEeccC
Q 016660          276 CVGLAS-------------LVQEAYACCRKG-WGKTIVLGVD  303 (385)
Q Consensus       276 ~~g~~~-------------~~~~~~~~l~~~-~G~~v~~g~~  303 (385)
                      +.|...             ....+++.+... .++++.++..
T Consensus        92 ~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         92 ATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             CCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            876421             123344444432 2578887654

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.1  Score=46.65  Aligned_cols=78  Identities=21%  Similarity=0.145  Sum_probs=48.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc--CCC-eEE--eCCCCCchhH-HHHhh--CCCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF--GVT-EFV--NSKNCGDKSI-IIDMT--DGGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l--g~~-~vv--~~~~~~~~~~-i~~~~--~g~~  270 (385)
                      ++.++||.|+ |.+|...++.+...|+ +|+.+.++.++.+... .+  +.. .++  |..+...... +....  -+++
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   82 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL   82 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999987 9999999988888898 7888888776544322 22  322 222  3222111111 11111  1378


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|.+.|.
T Consensus        83 d~vi~~ag~   91 (252)
T PRK06138         83 DVLVNNAGF   91 (252)
T ss_pred             CEEEECCCC
Confidence            999999884

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.52  E-value=0.32  Score=43.49  Aligned_cols=102  Identities=22%  Similarity=0.163  Sum_probs=58.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHH----HHHHHcCCC-eE--EeCCCCCchhH-HHHhhC--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKF----EIGKRFGVT-EF--VNSKNCGDKSI-IIDMTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~----~~~~~lg~~-~v--v~~~~~~~~~~-i~~~~~--g  268 (385)
                      .+.++||.|+ |.+|...++.+...|+ +|+.+.+ ..+..    ..+++.+.. ..  .|..+...... +.....  +
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYG   83 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence            3578999987 9999999988888999 6655543 22222    223334432 12  23333111111 222211  3


Q ss_pred             CccEEEEccCCh-------------------------HHHHHHHHHhccCCceEEEeccCC
Q 016660          269 GADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       269 ~~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      ++|++|.+.|..                         ...+.+.+.++.. |+++.++...
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~sS~~  143 (252)
T PRK06077         84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG-GAIVNIASVA  143 (252)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC-cEEEEEcchh
Confidence            689999999841                         1123445566675 8999887643

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=95.52  E-value=0.089  Score=48.03  Aligned_cols=79  Identities=22%  Similarity=0.315  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcC-CHHHHH-HHHHHHHcCCCEEEEEcCCchHHHHHH-----HcCC---CeEEeCCCCCc-hhHHHHhhCC
Q 016660          200 EVGSTVVIFGL-GSIGLA-VAEGARLCGATRIIGVDVISEKFEIGK-----RFGV---TEFVNSKNCGD-KSIIIDMTDG  268 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~-ai~la~~~G~~~vi~~~~~~~~~~~~~-----~lg~---~~vv~~~~~~~-~~~i~~~~~g  268 (385)
                      +.|.|.+|.|+ .++|.. |-+||| .|. +|+.+.++.+|++..+     +.++   ..++|..+.+. .+.+++.+.+
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~  124 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAG  124 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcC
Confidence            45799999998 899976 666776 999 7999999999988654     3453   24678777542 3346777777


Q ss_pred             -CccEEEEccCCh
Q 016660          269 -GADYCFECVGLA  280 (385)
Q Consensus       269 -~~d~vid~~g~~  280 (385)
                       .+-++++++|-.
T Consensus       125 ~~VgILVNNvG~~  137 (312)
T KOG1014|consen  125 LDVGILVNNVGMS  137 (312)
T ss_pred             CceEEEEeccccc
Confidence             788999999853

>PRK08643 acetoin reductase; Validated

Probab=95.51  E-value=0.11  Score=46.69  Aligned_cols=77  Identities=16%  Similarity=0.178  Sum_probs=48.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCe-E--EeCCCCCchhH-HHHhh--CCCc
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSI-IIDMT--DGGA  270 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~~  270 (385)
                      +.++||.|+ |++|...++.+...|+ +|+.+++++++.+.+.    +.+... .  .|..+...... +.+..  .+++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   80 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL   80 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            568999987 9999999999988999 8988888776654332    223221 1  23333111111 22221  1368


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|.+.|.
T Consensus        81 d~vi~~ag~   89 (256)
T PRK08643         81 NVVVNNAGV   89 (256)
T ss_pred             CEEEECCCC
Confidence            999999874

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=95.50  E-value=0.31  Score=44.39  Aligned_cols=102  Identities=19%  Similarity=0.351  Sum_probs=74.0

Q ss_pred             hhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-e--E--EeCCCCCchhHH
Q 016660          192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-E--F--VNSKNCGDKSII  262 (385)
Q Consensus       192 al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~--v--v~~~~~~~~~~i  262 (385)
                      .+.+..++++|.+||=+|+|- |-+++.+|+..|+ +|++++.|++..+.+++    .|.. +  +  -|+++       
T Consensus        63 ~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd-------  133 (283)
T COG2230          63 LILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD-------  133 (283)
T ss_pred             HHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc-------
Confidence            356788999999999999876 7778888998899 99999999998887664    5543 1  1  12222       


Q ss_pred             HHhhCCCccEEEE-----ccCC---hHHHHHHHHHhccCCceEEEeccCCCC
Q 016660          263 IDMTDGGADYCFE-----CVGL---ASLVQEAYACCRKGWGKTIVLGVDQPG  306 (385)
Q Consensus       263 ~~~~~g~~d~vid-----~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~~~  306 (385)
                        + .+.||-|+.     -+|.   +..++.+.+.|+++ |++.+.......
T Consensus       134 --~-~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~-G~~llh~I~~~~  181 (283)
T COG2230         134 --F-EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG-GRMLLHSITGPD  181 (283)
T ss_pred             --c-ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCC-ceEEEEEecCCC
Confidence              1 124776653     4444   35578899999997 999887766544

>PRK08317 hypothetical protein; Provisional

Probab=95.48  E-value=0.096  Score=46.47  Aligned_cols=102  Identities=27%  Similarity=0.395  Sum_probs=68.1

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHHc----CCC-eEEeCCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF----GVT-EFVNSKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~l----g~~-~vv~~~~~~~~~~i~~~~  266 (385)
                      +.+...+.++++||-+|+|. |..+..+++..+ ..++++++.+++.++.+++.    +.. .+...+. ..    ..+.
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~-~~----~~~~   84 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA-DG----LPFP   84 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc-cc----CCCC
Confidence            34556788899999999976 888889998763 23899999999888877764    111 1111111 00    1122


Q ss_pred             CCCccEEEEcc-----C-ChHHHHHHHHHhccCCceEEEec
Q 016660          267 DGGADYCFECV-----G-LASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       267 ~g~~d~vid~~-----g-~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .+.||+|+-..     . -...++.+.++|+++ |.++...
T Consensus        85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  124 (241)
T PRK08317         85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPG-GRVVVLD  124 (241)
T ss_pred             CCCceEEEEechhhccCCHHHHHHHHHHHhcCC-cEEEEEe
Confidence            34789887532     2 234578999999997 9988764

>PRK07402 precorrin-6B methylase; Provisional

Probab=95.48  E-value=0.29  Score=42.29  Aligned_cols=103  Identities=20%  Similarity=0.372  Sum_probs=62.2

Q ss_pred             hhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCe--EEeCCCCCchhHHHHhhC
Q 016660          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       194 ~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~--vv~~~~~~~~~~i~~~~~  267 (385)
                      ....++.++++||=+|+|. |..++.+++.....+|++++.+++..+.+++    ++...  ++..+.   ...+..+ .
T Consensus        33 ~~~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~---~~~~~~~-~  107 (196)
T PRK07402         33 ISQLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSA---PECLAQL-A  107 (196)
T ss_pred             HHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECch---HHHHhhC-C
Confidence            3455677889888888754 5556666665432389999999988776653    55543  222111   1111111 1


Q ss_pred             CCccE-EEEccCC-hHHHHHHHHHhccCCceEEEecc
Q 016660          268 GGADY-CFECVGL-ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       268 g~~d~-vid~~g~-~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ..+|. .++.... ...++.+.+.|+++ |+++....
T Consensus       108 ~~~d~v~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~  143 (196)
T PRK07402        108 PAPDRVCIEGGRPIKEILQAVWQYLKPG-GRLVATAS  143 (196)
T ss_pred             CCCCEEEEECCcCHHHHHHHHHHhcCCC-eEEEEEee
Confidence            22344 4543222 35578899999997 99887753

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.47  E-value=0.24  Score=39.96  Aligned_cols=99  Identities=25%  Similarity=0.253  Sum_probs=58.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc-------------------hHHHH----HHHcC-CCeEEeCCCCC
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-------------------EKFEI----GKRFG-VTEFVNSKNCG  257 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~-------------------~~~~~----~~~lg-~~~vv~~~~~~  257 (385)
                      ..+|+|+|+|++|...+..+-..|+.+++.+|.+.                   .|.+.    ++++. ..++.......
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~   81 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI   81 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence            46899999999999999999999998999987542                   12222    22232 22232222211


Q ss_pred             chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCce-EEEecc
Q 016660          258 DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK-TIVLGV  302 (385)
Q Consensus       258 ~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~-~v~~g~  302 (385)
                      .......+. .++|+||+|..+......+.+..... +. ++..+.
T Consensus        82 ~~~~~~~~~-~~~d~vi~~~d~~~~~~~l~~~~~~~-~~p~i~~~~  125 (135)
T PF00899_consen   82 DEENIEELL-KDYDIVIDCVDSLAARLLLNEICREY-GIPFIDAGV  125 (135)
T ss_dssp             SHHHHHHHH-HTSSEEEEESSSHHHHHHHHHHHHHT-T-EEEEEEE
T ss_pred             ccccccccc-cCCCEEEEecCCHHHHHHHHHHHHHc-CCCEEEEEe
Confidence            122233333 36899999999877555555555553 44 444443

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.46  E-value=0.32  Score=37.85  Aligned_cols=74  Identities=24%  Similarity=0.266  Sum_probs=53.9

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      |+|.|.|.+|...++.++..+. +|++++.++++.+.+++.|.. ++.-+. .....+.+..-..++.++-+.+...
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~-~i~gd~-~~~~~l~~a~i~~a~~vv~~~~~d~   74 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE-VIYGDA-TDPEVLERAGIEKADAVVILTDDDE   74 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE-EEES-T-TSHHHHHHTTGGCESEEEEESSSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc-cccccc-hhhhHHhhcCccccCEEEEccCCHH
Confidence            6788999999999999999765 899999999999999988854 444333 2333334332237899988887765

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.46  E-value=0.12  Score=46.76  Aligned_cols=78  Identities=22%  Similarity=0.268  Sum_probs=48.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH---cCCCe-E--EeCCCCCchhH-HHHhh--CCCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVTE-F--VNSKNCGDKSI-IIDMT--DGGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~---lg~~~-v--v~~~~~~~~~~-i~~~~--~g~~  270 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+.++++++..+..++   .+... .  .|..+...... +.+..  .+.+
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   83 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI   83 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999987 9999999999988999 79888887654443332   23321 1  23332111111 11211  1368


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|.+.|.
T Consensus        84 d~vi~~ag~   92 (263)
T PRK08226         84 DILVNNAGV   92 (263)
T ss_pred             CEEEECCCc
Confidence            999998884

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=95.46  E-value=0.1  Score=46.75  Aligned_cols=75  Identities=16%  Similarity=0.234  Sum_probs=48.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCe-E--EeCCCCCchhH-HHHhhC--CCccEEEE
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE-F--VNSKNCGDKSI-IIDMTD--GGADYCFE  275 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~-v--v~~~~~~~~~~-i~~~~~--g~~d~vid  275 (385)
                      +++|.|+ |++|...+..+...|+ +|+++++++++.+.+.. ++... .  .|..+...... +.....  ++.|++|.
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~   80 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVN   80 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5899987 9999999999988999 89999888877665433 44321 1  23333111111 222211  36899999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      ++|.
T Consensus        81 ~ag~   84 (248)
T PRK10538         81 NAGL   84 (248)
T ss_pred             CCCc
Confidence            8874

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.44  E-value=0.12  Score=46.48  Aligned_cols=78  Identities=24%  Similarity=0.312  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCC-eEE--eCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFV--NSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~-~vv--~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+.++||.|+ |.+|...++.+...|+ +|+.++++.++.+.+. +++.. ..+  |..+...... +.+..  -+.+|+
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDI   83 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            3678999987 9999999999998999 8999988887665433 34322 122  2222111111 22221  136899


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      ++.+.|.
T Consensus        84 li~~ag~   90 (257)
T PRK07067         84 LFNNAAL   90 (257)
T ss_pred             EEECCCc
Confidence            9998873

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.44  E-value=0.096  Score=47.77  Aligned_cols=99  Identities=20%  Similarity=0.164  Sum_probs=70.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC--
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG--  278 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g--  278 (385)
                      +..+|.|+|.|.+|.-++.+|-.+|+ +|+..+.+.+|++.+..+-..++-....  ....+.+... ++|++|.++=  
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~s--t~~~iee~v~-~aDlvIgaVLIp  242 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYS--TPSNIEEAVK-KADLVIGAVLIP  242 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEc--CHHHHHHHhh-hccEEEEEEEec
Confidence            34558888999999999999999999 8999999999999888754444322222  2222222221 5899987652  


Q ss_pred             Ch----HHHHHHHHHhccCCceEEEeccCC
Q 016660          279 LA----SLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       279 ~~----~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      +.    ...++..+.|+++ +.++.+....
T Consensus       243 gakaPkLvt~e~vk~MkpG-sVivDVAiDq  271 (371)
T COG0686         243 GAKAPKLVTREMVKQMKPG-SVIVDVAIDQ  271 (371)
T ss_pred             CCCCceehhHHHHHhcCCC-cEEEEEEEcC
Confidence            21    2256789999997 9998887644

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.44  E-value=0.058  Score=49.55  Aligned_cols=95  Identities=17%  Similarity=0.050  Sum_probs=59.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      ..+.+++|+|+|++|.+++..+...|+.+|+++.++.++.+.+. .++...-+.. +...    ... -..+|+||++++
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~----~~~-~~~~DivInaTp  194 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-DLEL----QEE-LADFDLIINATS  194 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-cccc----hhc-cccCCEEEECCc
Confidence            45678999999999999999999999669999999988776543 3432110111 1000    010 125899999987


Q ss_pred             ChHHH-----HHHHHHhccCCceEEEec
Q 016660          279 LASLV-----QEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       279 ~~~~~-----~~~~~~l~~~~G~~v~~g  301 (385)
                      ....-     ......+.++ ..++.+-
T Consensus       195 ~g~~~~~~~~~~~~~~l~~~-~~v~Div  221 (278)
T PRK00258        195 AGMSGELPLPPLPLSLLRPG-TIVYDMI  221 (278)
T ss_pred             CCCCCCCCCCCCCHHHcCCC-CEEEEee
Confidence            55310     1123456664 5555554

>PRK04457 spermidine synthase; Provisional

Probab=95.43  E-value=0.28  Score=44.61  Aligned_cols=94  Identities=13%  Similarity=0.192  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc-CC----C--eEEeCCCCCchhHHHHhhCCCccE
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV----T--EFVNSKNCGDKSIIIDMTDGGADY  272 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-g~----~--~vv~~~~~~~~~~i~~~~~g~~d~  272 (385)
                      .+..+||++|.|+ |.++..+++.....+|++++.+++-.+.+++. +.    +  +++.. +  ....+. ...+.||+
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~-D--a~~~l~-~~~~~yD~  139 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEA-D--GAEYIA-VHRHSTDV  139 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEEC-C--HHHHHH-hCCCCCCE
Confidence            4567899999876 77888888877544899999999999988763 32    1  12211 1  111122 22347998


Q ss_pred             EE-EccCC---------hHHHHHHHHHhccCCceEEE
Q 016660          273 CF-ECVGL---------ASLVQEAYACCRKGWGKTIV  299 (385)
Q Consensus       273 vi-d~~g~---------~~~~~~~~~~l~~~~G~~v~  299 (385)
                      |+ |....         .+.++.+.+.|+++ |.++.
T Consensus       140 I~~D~~~~~~~~~~l~t~efl~~~~~~L~pg-Gvlvi  175 (262)
T PRK04457        140 ILVDGFDGEGIIDALCTQPFFDDCRNALSSD-GIFVV  175 (262)
T ss_pred             EEEeCCCCCCCccccCcHHHHHHHHHhcCCC-cEEEE
Confidence            85 54321         36688999999997 99876

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=95.42  E-value=0.067  Score=47.96  Aligned_cols=106  Identities=16%  Similarity=0.221  Sum_probs=66.6

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHH----cCCCe-E-EeCCCCCchhH-HHH
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTE-F-VNSKNCGDKSI-IID  264 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~~~-v-v~~~~~~~~~~-i~~  264 (385)
                      +...+++.+|++||=.|.|+ |-++..+++..|- .+|+..+..+++.+.+++    .|... | +...+  .... ...
T Consensus        32 I~~~l~i~pG~~VlEaGtGS-G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~D--v~~~g~~~  108 (247)
T PF08704_consen   32 ILMRLDIRPGSRVLEAGTGS-GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRD--VCEEGFDE  108 (247)
T ss_dssp             HHHHTT--TT-EEEEE--TT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES---GGCG--ST
T ss_pred             HHHHcCCCCCCEEEEecCCc-HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecc--eecccccc
Confidence            34567899999999888765 7778888887752 389999999998887653    55532 2 22222  1111 111


Q ss_pred             hhCCCccEE-EEccCChHHHHHHHHHh-ccCCceEEEecc
Q 016660          265 MTDGGADYC-FECVGLASLVQEAYACC-RKGWGKTIVLGV  302 (385)
Q Consensus       265 ~~~g~~d~v-id~~g~~~~~~~~~~~l-~~~~G~~v~~g~  302 (385)
                      -..+.+|.| +|.-.--.++..+.+.| +++ |+++.+.-
T Consensus       109 ~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~g-G~i~~fsP  147 (247)
T PF08704_consen  109 ELESDFDAVFLDLPDPWEAIPHAKRALKKPG-GRICCFSP  147 (247)
T ss_dssp             T-TTSEEEEEEESSSGGGGHHHHHHHE-EEE-EEEEEEES
T ss_pred             cccCcccEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECC
Confidence            112368877 46655556799999999 887 99999863

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.12  Score=47.14  Aligned_cols=39  Identities=28%  Similarity=0.339  Sum_probs=33.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  240 (385)
                      ++.++||.|+ |.+|...++.+...|+ +|+.+.+++++.+
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~   45 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLA   45 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHH
Confidence            4678999997 9999999999999999 8999888766544

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.41  E-value=0.14  Score=45.61  Aligned_cols=78  Identities=21%  Similarity=0.301  Sum_probs=48.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe-EE--eCCCCCchhH-HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSI-IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-vv--~~~~~~~~~~-i~~~~~--g~  269 (385)
                      .+.++||.|+ |.+|...+..+...|+ +|+.+++++++.+..    +..+... ++  |..+...... +.....  ++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS   84 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            3578999987 9999999998888999 899898887654432    2233221 22  2222111111 222111  36


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|.+.|.
T Consensus        85 id~vi~~ag~   94 (239)
T PRK07666         85 IDILINNAGI   94 (239)
T ss_pred             ccEEEEcCcc
Confidence            8999998874

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.40  E-value=0.11  Score=47.60  Aligned_cols=78  Identities=23%  Similarity=0.225  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe-E--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.++||.|+ |++|...+..+...|+ +|+.+++++++.+.+    +..+.+. .  .|..+...... +....  -+.
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   83 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGH   83 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999987 9999999999989999 788888777655432    2234322 1  23322111111 11111  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|++.|.
T Consensus        84 id~li~nAg~   93 (275)
T PRK05876         84 VDVVFSNAGI   93 (275)
T ss_pred             CCEEEECCCc
Confidence            8999998874

>PRK07985 oxidoreductase; Provisional

Probab=95.39  E-value=0.34  Score=44.83  Aligned_cols=102  Identities=20%  Similarity=0.094  Sum_probs=59.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc--hHHHHH----HHcCCCe-E--EeCCCCCchhH-HHHhhC-
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS--EKFEIG----KRFGVTE-F--VNSKNCGDKSI-IIDMTD-  267 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~--~~~~~~----~~lg~~~-v--v~~~~~~~~~~-i~~~~~-  267 (385)
                      -++.++||.|+ |++|...++.+...|+ +|+.+.++.  ++.+.+    ++.+... +  .|..+...... +.+... 
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  125 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA  125 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            35678999997 9999999999999999 788775432  222222    2334322 1  23333111111 222222 


Q ss_pred             -CCccEEEEccCCh--------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          268 -GGADYCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       268 -g~~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                       +++|+++.+.|..                          ..++.++..++++ |+++.++..
T Consensus       126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~iv~iSS~  187 (294)
T PRK07985        126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKG-ASIITTSSI  187 (294)
T ss_pred             hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcC-CEEEEECCc
Confidence             3689999987731                          1123455556676 899887754

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.39  E-value=0.12  Score=46.36  Aligned_cols=77  Identities=23%  Similarity=0.215  Sum_probs=48.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-eEE--eCCCCCchhH-HHHhhC--CCc
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFV--NSKNCGDKSI-IIDMTD--GGA  270 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~vv--~~~~~~~~~~-i~~~~~--g~~  270 (385)
                      +.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.+    .+.. .++  |..+...... +.+...  +.+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            467999987 9999999999999999 89999888766554332    2322 222  3322111111 222211  368


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|++.|.
T Consensus        80 d~lI~~ag~   88 (252)
T PRK07677         80 DALINNAAG   88 (252)
T ss_pred             cEEEECCCC
Confidence            999999873

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.39  E-value=0.14  Score=46.12  Aligned_cols=78  Identities=18%  Similarity=0.258  Sum_probs=47.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch-HH-HH---HHHcCCCe-EE--eCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KF-EI---GKRFGVTE-FV--NSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~-~~-~~---~~~lg~~~-vv--~~~~~~~~~~-i~~~~--~g  268 (385)
                      ++.++||.|+ +++|...++.+...|+ +|++++++++ .. +.   +++.+... .+  |..+...... +....  -+
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g   85 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELG   85 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4678999987 9999999999999999 7888877643 22 22   22334321 22  3222111111 22211  23


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      .+|++|++.|.
T Consensus        86 ~id~li~~ag~   96 (254)
T PRK06114         86 ALTLAVNAAGI   96 (254)
T ss_pred             CCCEEEECCCC
Confidence            68999999984

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=95.38  E-value=0.15  Score=45.94  Aligned_cols=78  Identities=19%  Similarity=0.309  Sum_probs=47.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch--HHHHHHHcCCCe-E--EeCCCCCchhH-HHHhhC--CCcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVTE-F--VNSKNCGDKSI-IIDMTD--GGAD  271 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~--~~~~~~~lg~~~-v--v~~~~~~~~~~-i~~~~~--g~~d  271 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+.+++.+.  ..+.+++++... .  .|..+...... +.+...  +.+|
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D   87 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHID   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4678999987 9999999999999999 7887765432  223333444321 1  22222111111 222211  3689


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++|+++|.
T Consensus        88 ~li~~Ag~   95 (253)
T PRK08993         88 ILVNNAGL   95 (253)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=95.38  E-value=0.19  Score=45.49  Aligned_cols=97  Identities=22%  Similarity=0.208  Sum_probs=65.3

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eEEeCCCCCchhHHHHhhC-CCccE
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSIIIDMTD-GGADY  272 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vv~~~~~~~~~~i~~~~~-g~~d~  272 (385)
                      ....+.++++||=+|+|. |..+..+++..+..+|++++.++..++.+++.-.. .++..+       +..+.. +.+|+
T Consensus        25 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d-------~~~~~~~~~fD~   96 (258)
T PRK01683         25 ARVPLENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEAD-------IASWQPPQALDL   96 (258)
T ss_pred             hhCCCcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECc-------hhccCCCCCccE
Confidence            445567889999998865 66777888776434999999999888877764321 222211       112222 27999


Q ss_pred             EEEccCC------hHHHHHHHHHhccCCceEEEe
Q 016660          273 CFECVGL------ASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       273 vid~~g~------~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      |+-...-      ...++.+.+.|+++ |.++..
T Consensus        97 v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~~~~~  129 (258)
T PRK01683         97 IFANASLQWLPDHLELFPRLVSLLAPG-GVLAVQ  129 (258)
T ss_pred             EEEccChhhCCCHHHHHHHHHHhcCCC-cEEEEE
Confidence            9754331      24578899999997 998775

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=95.38  E-value=0.62  Score=41.91  Aligned_cols=95  Identities=15%  Similarity=0.243  Sum_probs=61.7

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eEEeCCCCCchhHHHHhhCCCccEEEEc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSIIIDMTDGGADYCFEC  276 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vv~~~~~~~~~~i~~~~~g~~d~vid~  276 (385)
                      ...++.+||-+|+|. |..+..+++ .|. .|+++|.+++.++.+++.... .++..+-   ..  ..+.++.||+|+..
T Consensus        39 ~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~d~---~~--~~~~~~~fD~V~s~  110 (251)
T PRK10258         39 PQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQKDAADHYLAGDI---ES--LPLATATFDLAWSN  110 (251)
T ss_pred             CccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCCCCCEEEcCc---cc--CcCCCCcEEEEEEC
Confidence            334578899999865 666655554 576 899999999998888775432 2221111   00  11222369999864


Q ss_pred             cC------ChHHHHHHHHHhccCCceEEEec
Q 016660          277 VG------LASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       277 ~g------~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ..      ....+.++.+.++++ |.+++..
T Consensus       111 ~~l~~~~d~~~~l~~~~~~Lk~g-G~l~~~~  140 (251)
T PRK10258        111 LAVQWCGNLSTALRELYRVVRPG-GVVAFTT  140 (251)
T ss_pred             chhhhcCCHHHHHHHHHHHcCCC-eEEEEEe
Confidence            32      224578899999997 9988664

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.38  E-value=0.13  Score=47.07  Aligned_cols=77  Identities=23%  Similarity=0.202  Sum_probs=48.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-H---HcCCC-eE--EeCCCCCchhH-HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K---RFGVT-EF--VNSKNCGDKSI-IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~---~lg~~-~v--v~~~~~~~~~~-i~~~~~--g~  269 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+.+++++++.+.+ +   +.+.. ..  .|..+...... +.....  +.
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   87 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP   87 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999987 9999999999989999 888888876654332 2   22332 12  22222111111 222211  36


Q ss_pred             ccEEEEccC
Q 016660          270 ADYCFECVG  278 (385)
Q Consensus       270 ~d~vid~~g  278 (385)
                      +|++|.++|
T Consensus        88 id~li~~ag   96 (278)
T PRK08277         88 CDILINGAG   96 (278)
T ss_pred             CCEEEECCC
Confidence            899999987

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.37  E-value=0.024  Score=46.70  Aligned_cols=94  Identities=19%  Similarity=0.155  Sum_probs=56.5

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC-CCchhH--HH--HhhCCCccEEEEccCC
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN-CGDKSI--II--DMTDGGADYCFECVGL  279 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~-~~~~~~--i~--~~~~g~~d~vid~~g~  279 (385)
                      |+|+|+|++|.+.+..++..|. .|..+.+.+ +.+..++.|..-. .... ......  ..  ....+.+|+||-|+-.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTIT-GPDGDETVQPPIVISAPSADAGPYDLVIVAVKA   77 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEE-ETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEE-ecccceecccccccCcchhccCCCcEEEEEecc
Confidence            6899999999998888888999 898888777 7777776554211 1110 000000  00  1122379999999876


Q ss_pred             hH---HHHHHHHHhccCCceEEEecc
Q 016660          280 AS---LVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~---~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ..   .++.+...+.++ ..++.+-+
T Consensus        78 ~~~~~~l~~l~~~~~~~-t~iv~~qN  102 (151)
T PF02558_consen   78 YQLEQALQSLKPYLDPN-TTIVSLQN  102 (151)
T ss_dssp             GGHHHHHHHHCTGEETT-EEEEEESS
T ss_pred             cchHHHHHHHhhccCCC-cEEEEEeC
Confidence            54   233444444554 56776654

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.35  E-value=0.16  Score=44.97  Aligned_cols=84  Identities=20%  Similarity=0.245  Sum_probs=59.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH--cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR--FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~--lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +++|.|+|.+|...++.+...|. .|++++.++++.+...+  +.. +++..+. .....+++..-..+|+++-++|...
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~-~~v~gd~-t~~~~L~~agi~~aD~vva~t~~d~   78 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDT-HVVIGDA-TDEDVLEEAGIDDADAVVAATGNDE   78 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcce-EEEEecC-CCHHHHHhcCCCcCCEEEEeeCCCH
Confidence            57899999999999999999999 89999999998777333  443 4444444 2222244432337999999999876


Q ss_pred             HHHHHHHHhc
Q 016660          282 LVQEAYACCR  291 (385)
Q Consensus       282 ~~~~~~~~l~  291 (385)
                       .+..+.+++
T Consensus        79 -~N~i~~~la   87 (225)
T COG0569          79 -VNSVLALLA   87 (225)
T ss_pred             -HHHHHHHHH
Confidence             555555444

>PRK06720 hypothetical protein; Provisional

Probab=95.35  E-value=0.18  Score=42.50  Aligned_cols=39  Identities=26%  Similarity=0.223  Sum_probs=32.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  240 (385)
                      ++.+++|.|+ +++|...+..+...|+ +|++++++.+..+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~   54 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ   54 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            5678999987 8999999988888898 8999887766543

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.33  E-value=0.15  Score=46.07  Aligned_cols=78  Identities=19%  Similarity=0.154  Sum_probs=47.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH---HHHHcCCC-eE--EeCCCCCchhH-HHHhh--CCCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE---IGKRFGVT-EF--VNSKNCGDKSI-IIDMT--DGGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~---~~~~lg~~-~v--v~~~~~~~~~~-i~~~~--~g~~  270 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++.++++..+   ...+.+.+ .+  .|..+...... +.+..  -+.+
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   92 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKI   92 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 9999999999999999 7888877632222   22233432 12  23333111111 22221  1368


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|.+.|.
T Consensus        93 d~li~~ag~  101 (258)
T PRK06935         93 DILVNNAGT  101 (258)
T ss_pred             CEEEECCCC
Confidence            999998874

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.33  E-value=0.26  Score=40.20  Aligned_cols=97  Identities=19%  Similarity=0.262  Sum_probs=56.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc-------------------hHHH----HHHHcCC-CeEEeCCCCCch
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-------------------EKFE----IGKRFGV-TEFVNSKNCGDK  259 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~-------------------~~~~----~~~~lg~-~~vv~~~~~~~~  259 (385)
                      +|+|+|+|++|...++.+-..|.+++..+|.+.                   .|.+    .++++.. ..+-.+......
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            489999999999999999999998899987541                   1111    2223332 122111111111


Q ss_pred             hHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCc-eEEEecc
Q 016660          260 SIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWG-KTIVLGV  302 (385)
Q Consensus       260 ~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G-~~v~~g~  302 (385)
                      .....+. .++|+||+|...........+..+.. + .++..+.
T Consensus        81 ~~~~~~~-~~~diVi~~~d~~~~~~~l~~~~~~~-~i~~i~~~~  122 (143)
T cd01483          81 DNLDDFL-DGVDLVIDAIDNIAVRRALNRACKEL-GIPVIDAGG  122 (143)
T ss_pred             hhHHHHh-cCCCEEEECCCCHHHHHHHHHHHHHc-CCCEEEEcC
Confidence            1111222 26999999999877544455555553 4 3455544

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.33  E-value=0.21  Score=47.95  Aligned_cols=91  Identities=13%  Similarity=0.097  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC-------------------chHHHHH----HHcCC-CeEEeCCCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI-------------------SEKFEIG----KRFGV-TEFVNSKNC  256 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~-------------------~~~~~~~----~~lg~-~~vv~~~~~  256 (385)
                      .+.+|+|+|+|++|..++..+...|+++++.++.+                   ..|.+.+    +++.. ..+..+...
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~  213 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER  213 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence            56789999999999999999999999999999876                   2333322    22322 222222221


Q ss_pred             CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhcc
Q 016660          257 GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRK  292 (385)
Q Consensus       257 ~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~  292 (385)
                      -....+..+. .++|+||||+.+..+....-+....
T Consensus       214 ~~~~~~~~~~-~~~D~Vv~~~d~~~~r~~ln~~~~~  248 (376)
T PRK08762        214 VTSDNVEALL-QDVDVVVDGADNFPTRYLLNDACVK  248 (376)
T ss_pred             CChHHHHHHH-hCCCEEEECCCCHHHHHHHHHHHHH
Confidence            1111233332 2699999999987643333333333

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.31  E-value=0.34  Score=44.29  Aligned_cols=101  Identities=18%  Similarity=0.239  Sum_probs=62.6

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCCch---HHH-HHHHcCCCeE--EeCCCCCchhH-HHHhhC--C
Q 016660          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFE-IGKRFGVTEF--VNSKNCGDKSI-IIDMTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~~---~~~-~~~~lg~~~v--v~~~~~~~~~~-i~~~~~--g  268 (385)
                      .+.++||.|+   +++|.++++.+...|+ +|+.++++++   +.+ ..++++....  .|..+...... +.....  +
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g   82 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLG   82 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4678999986   4899999998888999 7888877642   222 2234554322  34433221111 222222  4


Q ss_pred             CccEEEEccCCh-----------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          269 GADYCFECVGLA-----------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       269 ~~d~vid~~g~~-----------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      .+|++|+++|..                             ...+.++..+.++ |+++.++..
T Consensus        83 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-g~Iv~isS~  145 (274)
T PRK08415         83 KIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG-ASVLTLSYL  145 (274)
T ss_pred             CCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC-CcEEEEecC
Confidence            689999998841                             0124456667776 899887754

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.31  E-value=0.052  Score=56.23  Aligned_cols=78  Identities=26%  Similarity=0.243  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch---------------------HHHHHHHcCCCeEEeCCCCCc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---------------------KFEIGKRFGVTEFVNSKNCGD  258 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~---------------------~~~~~~~lg~~~vv~~~~~~~  258 (385)
                      ..+.+|+|+|+|+.|+.++..+...|+ +|++++..+.                     ..++++++|++...+..-...
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  403 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD  403 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence            357899999999999999999999999 7888876532                     355667788754333211001


Q ss_pred             hhHHHHhhCCCccEEEEccCCh
Q 016660          259 KSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       259 ~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      . .+..+. .+||.||.++|..
T Consensus       404 i-~~~~~~-~~~DavilAtGa~  423 (654)
T PRK12769        404 I-SLESLL-EDYDAVFVGVGTY  423 (654)
T ss_pred             C-CHHHHH-hcCCEEEEeCCCC
Confidence            0 122221 2699999988863

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.30  E-value=0.28  Score=43.92  Aligned_cols=35  Identities=40%  Similarity=0.474  Sum_probs=30.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      ++.++||.|+ |.+|...++.+...|+ +|++++++.
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~   42 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence            4678999987 9999999998888999 888887765

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.28  E-value=0.22  Score=44.67  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .+.+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            34779999999999999999999999999988654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=95.28  E-value=0.35  Score=42.36  Aligned_cols=99  Identities=18%  Similarity=0.184  Sum_probs=63.6

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCe--EEeCCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~--vv~~~~~~~~~~i~~~~  266 (385)
                      +....+++++++||-+|+|. |..+..+++..+  +|++++.+++..+.+++    ++...  ++..+.   ..   .+.
T Consensus        70 l~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~---~~~  140 (212)
T PRK00312         70 MTELLELKPGDRVLEIGTGS-GYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG---WK---GWP  140 (212)
T ss_pred             HHHhcCCCCCCEEEEECCCc-cHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc---cc---CCC
Confidence            34566788999999998765 555666666543  79999998877665543    45432  221111   00   111


Q ss_pred             -CCCccEEEEccCChHHHHHHHHHhccCCceEEEec
Q 016660          267 -DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       267 -~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                       .+.||+|+-............+.|+++ |+++..-
T Consensus       141 ~~~~fD~I~~~~~~~~~~~~l~~~L~~g-G~lv~~~  175 (212)
T PRK00312        141 AYAPFDRILVTAAAPEIPRALLEQLKEG-GILVAPV  175 (212)
T ss_pred             cCCCcCEEEEccCchhhhHHHHHhcCCC-cEEEEEE
Confidence             136999876555555467888999997 9987643

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.26  E-value=0.17  Score=44.98  Aligned_cols=78  Identities=21%  Similarity=0.197  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC-eE--EeCCCCCchhH-HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSI-IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~v--v~~~~~~~~~~-i~~~~~--g~  269 (385)
                      ...++||.|+ |.+|..++..+...|+ +|+++++++++.+.+.    +.+.. .+  .|..+...... +.....  +.
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4578999987 9999999999998999 8999988876654332    22322 12  23332111111 222111  36


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      .|++|.+.|.
T Consensus        84 id~lv~~ag~   93 (241)
T PRK07454         84 PDVLINNAGM   93 (241)
T ss_pred             CCEEEECCCc
Confidence            8999999984

>PRK09242 tropinone reductase; Provisional

Probab=95.26  E-value=0.15  Score=45.87  Aligned_cols=78  Identities=19%  Similarity=0.149  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc-----CCCe-E--EeCCCCCchhH-HHHhh--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVTE-F--VNSKNCGDKSI-IIDMT--D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l-----g~~~-v--v~~~~~~~~~~-i~~~~--~  267 (385)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++     +.+. .  .|..+...... +.+..  -
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4778999987 9999999999999999 7888888877655332 21     2221 1  23333111111 22211  2


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|.+.|.
T Consensus        87 g~id~li~~ag~   98 (257)
T PRK09242         87 DGLHILVNNAGG   98 (257)
T ss_pred             CCCCEEEECCCC
Confidence            368999999985

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.26  E-value=0.13  Score=47.01  Aligned_cols=94  Identities=15%  Similarity=0.115  Sum_probs=59.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcC---CCeEEeCCCCCchhHHHHhhCCCccEEE
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFG---VTEFVNSKNCGDKSIIIDMTDGGADYCF  274 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg---~~~vv~~~~~~~~~~i~~~~~g~~d~vi  274 (385)
                      ..++.+++|+|+|++|.+++..+...|+ +|+++.+++++.+. ++.+.   ....+...         ......+|+||
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~---------~~~~~~~DivI  183 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAFSMD---------ELPLHRVDLII  183 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEechh---------hhcccCccEEE
Confidence            3457889999999999999988888898 89999888777554 33332   21222111         11112589999


Q ss_pred             EccCChHH--H---HHHHHHhccCCceEEEeccC
Q 016660          275 ECVGLASL--V---QEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       275 d~~g~~~~--~---~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +|++....  .   ......++++ ..++.+...
T Consensus       184 natp~gm~~~~~~~~~~~~~l~~~-~~v~D~~y~  216 (270)
T TIGR00507       184 NATSAGMSGNIDEPPVPAEKLKEG-MVVYDMVYN  216 (270)
T ss_pred             ECCCCCCCCCCCCCCCCHHHcCCC-CEEEEeccC
Confidence            99986421  1   1123456664 566666543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.25  E-value=0.12  Score=47.92  Aligned_cols=39  Identities=21%  Similarity=0.212  Sum_probs=32.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  240 (385)
                      .+.+|||.|+ |++|..+++.+...|+ +|+.+.++.++.+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~   54 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGK   54 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            5688999987 9999999998888899 7888888776644

>PLN02253 xanthoxin dehydrogenase

Probab=95.25  E-value=0.13  Score=46.99  Aligned_cols=78  Identities=22%  Similarity=0.220  Sum_probs=48.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCC--C-eE--EeCCCCCchhH-HHHhhC--CCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGV--T-EF--VNSKNCGDKSI-IIDMTD--GGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~--~-~v--v~~~~~~~~~~-i~~~~~--g~~  270 (385)
                      .+.++||.|+ |++|...++.+...|+ +|++++++++..+. ..+++.  . ..  .|..+...... +.....  +++
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~i   95 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTL   95 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            4678999987 9999999888888899 88888877655432 333322  1 12  23333111111 121111  368


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|+++|.
T Consensus        96 d~li~~Ag~  104 (280)
T PLN02253         96 DIMVNNAGL  104 (280)
T ss_pred             CEEEECCCc
Confidence            999998874

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=95.23  E-value=0.16  Score=45.39  Aligned_cols=76  Identities=21%  Similarity=0.177  Sum_probs=48.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC-eEEeCCCCCchhHHHHh----h--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFVNSKNCGDKSIIIDM----T--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~vv~~~~~~~~~~i~~~----~--~g  268 (385)
                      ++.++||.|+ |.+|...++.+...|+ +|+.++++.++...+.    +.+.. .++.. +......+.++    .  .+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~   79 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFAC-DITDRDSVDTAVAAAEQALG   79 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEc-CCCCHHHHHHHHHHHHHHcC
Confidence            4678999997 9999999999988999 8888888776654332    22322 22222 21222222222    1  13


Q ss_pred             CccEEEEccC
Q 016660          269 GADYCFECVG  278 (385)
Q Consensus       269 ~~d~vid~~g  278 (385)
                      ++|++|.+.|
T Consensus        80 ~~d~vi~~ag   89 (250)
T TIGR03206        80 PVDVLVNNAG   89 (250)
T ss_pred             CCCEEEECCC
Confidence            6899999997

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.23  E-value=0.27  Score=42.42  Aligned_cols=76  Identities=24%  Similarity=0.257  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-c----CCCe-EEeCCCCCchhHHHHhhCCCccEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GVTE-FVNSKNCGDKSIIIDMTDGGADYC  273 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-l----g~~~-vv~~~~~~~~~~i~~~~~g~~d~v  273 (385)
                      ++.+++|+|+ |.+|..++..+...|+ +|+.+.++.++.+.+.+ +    +... ..+..+   ...+.+... +.|+|
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~-~~diV  101 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGAVETSD---DAARAAAIK-GADVV  101 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC---HHHHHHHHh-cCCEE
Confidence            5788999997 9999998888888887 88888888777654432 2    2221 122222   122223222 58999


Q ss_pred             EEccCChH
Q 016660          274 FECVGLAS  281 (385)
Q Consensus       274 id~~g~~~  281 (385)
                      |.+++...
T Consensus       102 i~at~~g~  109 (194)
T cd01078         102 FAAGAAGV  109 (194)
T ss_pred             EECCCCCc
Confidence            99887665

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.20  E-value=0.17  Score=45.47  Aligned_cols=78  Identities=17%  Similarity=0.245  Sum_probs=49.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCC-eE--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.++||.|+ |.+|...++.+...|+ +|+.+++++++.+.+    ++.+.. ..  .|..+...... +....  -+.
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            5788999987 9999999988888899 899998887654432    233432 12  23333111111 12211  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|.+.|.
T Consensus        89 id~vi~~ag~   98 (256)
T PRK06124         89 LDILVNNVGA   98 (256)
T ss_pred             CCEEEECCCC
Confidence            8999998884

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.20  E-value=0.13  Score=46.18  Aligned_cols=74  Identities=19%  Similarity=0.254  Sum_probs=47.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eE--EeCCCCCchhH-HHHhh--CCCccEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EF--VNSKNCGDKSI-IIDMT--DGGADYC  273 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~v--v~~~~~~~~~~-i~~~~--~g~~d~v  273 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+.+++++++    ...+.. .+  .|..+...... +....  -+.+|++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   79 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE----TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVL   79 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh----hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4788999987 9999999999988999 88888877654    112221 12  23333111111 22221  1368999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      |.+.|.
T Consensus        80 i~~ag~   85 (252)
T PRK07856         80 VNNAGG   85 (252)
T ss_pred             EECCCC
Confidence            998874

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.20  E-value=0.17  Score=45.50  Aligned_cols=78  Identities=26%  Similarity=0.376  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HH---cCCCe-E--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KR---FGVTE-F--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~---lg~~~-v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+.+++++++.+.+ .+   .+... .  .|..+...... +....  -+.
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   86 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP   86 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            4678999987 9999999999888999 888898887665432 22   23221 2  23222111111 21211  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|+++.+.|.
T Consensus        87 id~vi~~ag~   96 (254)
T PRK08085         87 IDVLINNAGI   96 (254)
T ss_pred             CCEEEECCCc
Confidence            8999999974

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.18  E-value=0.14  Score=47.83  Aligned_cols=39  Identities=28%  Similarity=0.299  Sum_probs=33.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  240 (385)
                      .+.+++|+|+ +++|..+++.+...|+ +|+.+.++.++.+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~   52 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGE   52 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            4678999997 9999999998888999 8888888877654

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.17  E-value=0.18  Score=46.56  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .++.++||+|+|++|.+++..+...|+++|+++.++.
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3567899999999999988888899997799998885

>PRK07904 short chain dehydrogenase; Provisional

Probab=95.17  E-value=0.15  Score=46.08  Aligned_cols=80  Identities=23%  Similarity=0.275  Sum_probs=49.1

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCCchH-HH-H---HHHcCC-C-eE--EeCCCCCchhH-HHHhh
Q 016660          199 VEVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEK-FE-I---GKRFGV-T-EF--VNSKNCGDKSI-IIDMT  266 (385)
Q Consensus       199 ~~~~~~VlI~G~-g~vG~~ai~la~~~-G~~~vi~~~~~~~~-~~-~---~~~lg~-~-~v--v~~~~~~~~~~-i~~~~  266 (385)
                      +..+.+|||.|+ |++|...++.+... |+ +|+++++++++ .+ .   +++.+. . ++  .|..+...... +.+..
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence            456788999997 99999988876666 47 88888887764 33 2   233342 1 22  23333222111 33322


Q ss_pred             C-CCccEEEEccCC
Q 016660          267 D-GGADYCFECVGL  279 (385)
Q Consensus       267 ~-g~~d~vid~~g~  279 (385)
                      . ++.|++|.+.|.
T Consensus        84 ~~g~id~li~~ag~   97 (253)
T PRK07904         84 AGGDVDVAIVAFGL   97 (253)
T ss_pred             hcCCCCEEEEeeec
Confidence            2 479999987765

>PRK08278 short chain dehydrogenase; Provisional

Probab=95.17  E-value=0.15  Score=46.56  Aligned_cols=36  Identities=39%  Similarity=0.426  Sum_probs=30.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      ++.++||.|+ |++|...++.+...|+ +|++++++.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~   41 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAE   41 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccc
Confidence            4678999997 9999999998888999 7888877653

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=95.17  E-value=0.18  Score=44.83  Aligned_cols=77  Identities=22%  Similarity=0.263  Sum_probs=49.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCC-eEEeCCCCCchhHHHHh----h--CCCcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFVNSKNCGDKSIIIDM----T--DGGAD  271 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~vv~~~~~~~~~~i~~~----~--~g~~d  271 (385)
                      ++.++||.|+ |.+|...++.+...|+ .|+..+++.++.+.+ ..++.. .++. -+......+.++    .  -+++|
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~~~~~~~~~~~~id   82 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFP-ANLSDRDEVKALGQKAEADLEGVD   82 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEE-ccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4678999997 9999999998888998 788887776665543 334432 2221 121222222221    1  13689


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++|.+.|.
T Consensus        83 ~vi~~ag~   90 (245)
T PRK12936         83 ILVNNAGI   90 (245)
T ss_pred             EEEECCCC
Confidence            99999884

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.14  E-value=0.1  Score=46.06  Aligned_cols=74  Identities=18%  Similarity=0.228  Sum_probs=47.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      +++|.|+ |++|...++.+...|+ +|+.+++++++.+.+ ++++...+ .|..+......+.+...+.+|+++++.|
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag   78 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPA   78 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCC
Confidence            4899987 9999999999988999 888888887776543 44444322 3333321111122222235899998865

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.14  E-value=0.12  Score=48.37  Aligned_cols=77  Identities=18%  Similarity=0.159  Sum_probs=48.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcC---CC-eE--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG---VT-EF--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg---~~-~v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      .+.++||+|+ |++|..+++.+...|+ +|++++++.++.+.+ +++.   .. .+  .|..+...... +....  .+.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   83 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP   83 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            4678999987 9999999998888898 888888887765433 3332   11 11  23333111111 22211  126


Q ss_pred             ccEEEEccC
Q 016660          270 ADYCFECVG  278 (385)
Q Consensus       270 ~d~vid~~g  278 (385)
                      +|++|+++|
T Consensus        84 iD~li~nAg   92 (322)
T PRK07453         84 LDALVCNAA   92 (322)
T ss_pred             ccEEEECCc
Confidence            899999987

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.14  E-value=0.17  Score=45.33  Aligned_cols=78  Identities=17%  Similarity=0.155  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC-eEE--eCCCCCchhH-HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSI-IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~vv--~~~~~~~~~~-i~~~~~--g~  269 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+.+++++++.+.+.    +.+.. +.+  |..+...... +.....  +.
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGR   85 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            3578999987 9999999999998999 8999988776654332    22322 222  3333111111 222221  35


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|+++++.|.
T Consensus        86 id~li~~ag~   95 (252)
T PRK07035         86 LDILVNNAAA   95 (252)
T ss_pred             CCEEEECCCc
Confidence            8999998873

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=95.13  E-value=0.64  Score=42.69  Aligned_cols=59  Identities=20%  Similarity=0.276  Sum_probs=44.9

Q ss_pred             hhccCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEc--CCchHHHHHHHcCCCeEEeCC
Q 016660          195 RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVD--VISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      ....+++|.+| |=+ +|..|...+.+|+.+|++-+++..  .+.+|..+++.+|+.-++.+.
T Consensus        55 ~~G~l~pG~tI-VE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          55 KRGLLKPGGTI-VEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             HcCCCCCCCEE-EEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence            45568999944 445 499999999999999996555553  356788899999997666555

>PRK05650 short chain dehydrogenase; Provisional

Probab=95.11  E-value=0.15  Score=46.29  Aligned_cols=75  Identities=27%  Similarity=0.252  Sum_probs=46.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeEEeCCCCCchhHHHHhh------CCCccE
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSIIIDMT------DGGADY  272 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~~~~------~g~~d~  272 (385)
                      ++||.|+ |++|...++.+...|+ +|+.++++.++.+.+    +..+.+..+-.-+......+.++.      .+++|+
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~   80 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV   80 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            6899987 9999999988888899 788888877665432    233433221111211222222211      136999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        81 lI~~ag~   87 (270)
T PRK05650         81 IVNNAGV   87 (270)
T ss_pred             EEECCCC
Confidence            9999884

>PRK06482 short chain dehydrogenase; Provisional

Probab=95.11  E-value=0.17  Score=46.19  Aligned_cols=76  Identities=16%  Similarity=0.148  Sum_probs=48.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCC-eE--EeCCCCCchhH-HHHhh--CCCccEEE
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EF--VNSKNCGDKSI-IIDMT--DGGADYCF  274 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~-~v--v~~~~~~~~~~-i~~~~--~g~~d~vi  274 (385)
                      .++||+|+ |.+|...++.+...|+ +|+++.+++++.+.+++ ++.. .+  .|..+...... +.+..  .+++|++|
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   81 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVV   81 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            57999987 9999999988888899 89888888877665543 2322 11  23333111111 22211  13689999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      .++|.
T Consensus        82 ~~ag~   86 (276)
T PRK06482         82 SNAGY   86 (276)
T ss_pred             ECCCC
Confidence            99874

>PLN03075 nicotianamine synthase; Provisional

Probab=95.08  E-value=0.17  Score=46.49  Aligned_cols=96  Identities=15%  Similarity=0.158  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHHcC-----CCeEEeCCCCCchhHHHHhh--CCCccE
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFG-----VTEFVNSKNCGDKSIIIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg-----~~~vv~~~~~~~~~~i~~~~--~g~~d~  272 (385)
                      +.++|+-+|+|+.++.++.+++.... .+++.+|.+++..+.+++.-     ...-+.....+    +....  .++||+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~D----a~~~~~~l~~FDl  198 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTAD----VMDVTESLKEYDV  198 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECc----hhhcccccCCcCE
Confidence            77999999999999998888875532 28999999999888887633     11111111111    12222  237999


Q ss_pred             EEEcc-------CChHHHHHHHHHhccCCceEEEec
Q 016660          273 CFECV-------GLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       273 vid~~-------g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ||-.+       .-...++.+.+.|++| |.++.=.
T Consensus       199 VF~~ALi~~dk~~k~~vL~~l~~~LkPG-G~Lvlr~  233 (296)
T PLN03075        199 VFLAALVGMDKEEKVKVIEHLGKHMAPG-ALLMLRS  233 (296)
T ss_pred             EEEecccccccccHHHHHHHHHHhcCCC-cEEEEec
Confidence            98664       2234578899999997 8777554

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.08  E-value=0.19  Score=44.58  Aligned_cols=77  Identities=10%  Similarity=-0.022  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe-EE--eCCCCCchhH-HHHhh--CC-
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSI-IIDMT--DG-  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-vv--~~~~~~~~~~-i~~~~--~g-  268 (385)
                      ++.++||.|+ +++|...+..+...|+ +|+.+.+++++.+.+    ++.+.+. .+  |..+...... +.+..  -+ 
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR   82 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4678999987 9999998888888999 788888888765433    2335432 22  3222111111 22211  14 


Q ss_pred             CccEEEEccC
Q 016660          269 GADYCFECVG  278 (385)
Q Consensus       269 ~~d~vid~~g  278 (385)
                      .+|++|.+.|
T Consensus        83 ~iD~li~nag   92 (227)
T PRK08862         83 APDVLVNNWT   92 (227)
T ss_pred             CCCEEEECCc
Confidence            6899999986

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.06  E-value=0.19  Score=45.60  Aligned_cols=78  Identities=22%  Similarity=0.330  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe-E--EeCCCCCchhH-HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSI-IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--v~~~~~~~~~~-i~~~~~--g~  269 (385)
                      .+.++||.|+ +++|...+..+...|+ +|+.+++++++.+.+    ++.|... .  .|..+...... +.+...  +.
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGV   87 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            5678999987 9999998888888899 788888887665432    2334332 2  23332111111 222111  36


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|++.|.
T Consensus        88 id~li~~ag~   97 (265)
T PRK07097         88 IDILVNNAGI   97 (265)
T ss_pred             CCEEEECCCC
Confidence            8999999875

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.06  E-value=0.16  Score=46.29  Aligned_cols=77  Identities=23%  Similarity=0.224  Sum_probs=50.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcC-CCe-EEeCCCCCchhH-HHHhh--CCCccEEE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG-VTE-FVNSKNCGDKSI-IIDMT--DGGADYCF  274 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg-~~~-vv~~~~~~~~~~-i~~~~--~g~~d~vi  274 (385)
                      +.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ +.++ +.. ..|..+...... +....  .++.|++|
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLV   83 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            568999997 9999999988888899 788888888776543 3444 221 234443222111 22222  14689999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      ++.|.
T Consensus        84 ~~ag~   88 (273)
T PRK07825         84 NNAGV   88 (273)
T ss_pred             ECCCc
Confidence            99874

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=95.06  E-value=0.22  Score=39.00  Aligned_cols=87  Identities=18%  Similarity=0.221  Sum_probs=59.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHH-HHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      +|.|+|.|.+|.....-++..  +.+-+-++++++++.+. .+++|.. .+  .+      +.++... .+|+|+-+++.
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~--~~------~~~ll~~~~~D~V~I~tp~   72 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-VY--TD------LEELLADEDVDAVIIATPP   72 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-EE--SS------HHHHHHHTTESEEEEESSG
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-ch--hH------HHHHHHhhcCCEEEEecCC
Confidence            588999999999887666654  55333456666666664 5667776 33  22      2333332 79999999999


Q ss_pred             hHHHHHHHHHhccCCceEEEec
Q 016660          280 ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ....+.+..++..  |.-+++-
T Consensus        73 ~~h~~~~~~~l~~--g~~v~~E   92 (120)
T PF01408_consen   73 SSHAEIAKKALEA--GKHVLVE   92 (120)
T ss_dssp             GGHHHHHHHHHHT--TSEEEEE
T ss_pred             cchHHHHHHHHHc--CCEEEEE
Confidence            8878888888888  4566664

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=95.04  E-value=0.43  Score=44.97  Aligned_cols=130  Identities=21%  Similarity=0.197  Sum_probs=81.2

Q ss_pred             EEEEEcCCHHH-HHHHHHHHHcC--CCEEEEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccC
Q 016660          204 TVVIFGLGSIG-LAVAEGARLCG--ATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG  278 (385)
Q Consensus       204 ~VlI~G~g~vG-~~ai~la~~~G--~~~vi~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g  278 (385)
                      +|.|+|+|.++ ...+..++..+  +..+-++++++++.+ .++++|....+  .+      ..++... .+|+|+-++.
T Consensus         5 rvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~--~~------~~~ll~~~~iD~V~Iatp   76 (342)
T COG0673           5 RVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAY--TD------LEELLADPDIDAVYIATP   76 (342)
T ss_pred             EEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCccc--CC------HHHHhcCCCCCEEEEcCC
Confidence            58899997555 45666666554  445556677887754 56678876322  22      3444444 6999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHH------Hhhc-CcEEEEeeecCCCCCCcHHHHHHHHHcCCCC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------VLHS-GKILMGSLFGGLKAKSDIPILLKRYMDKELE  350 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~~~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~  350 (385)
                      .....+.+.+.|..  |+-|++-..     +..+...      +-.+ ++.+.=.  ..+.....++.+-+++.+|.+-
T Consensus        77 ~~~H~e~~~~AL~a--GkhVl~EKP-----la~t~~ea~~l~~~a~~~~~~l~v~--~~~Rf~p~~~~~k~li~~g~lG  146 (342)
T COG0673          77 NALHAELALAALEA--GKHVLCEKP-----LALTLEEAEELVELARKAGVKLMVG--FNRRFDPAVQALKELIDSGALG  146 (342)
T ss_pred             ChhhHHHHHHHHhc--CCEEEEcCC-----CCCCHHHHHHHHHHHHHcCCceeee--hhhhcCHHHHHHHHHHhcCCcC
Confidence            98889999999999  677777432     3333322      2222 3333222  2233335688888888888543

>PLN02244 tocopherol O-methyltransferase

Probab=95.02  E-value=0.18  Score=47.77  Aligned_cols=94  Identities=21%  Similarity=0.285  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc----CCC-e--EEeCCCCCchhHHHHhhCCCccE
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT-E--FVNSKNCGDKSIIIDMTDGGADY  272 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~-~--vv~~~~~~~~~~i~~~~~g~~d~  272 (385)
                      +++++||=+|+|. |..+..+++..|+ +|++++.++...+.+++.    |.. .  ++..+.   ..  ..+.++.||+
T Consensus       117 ~~~~~VLDiGCG~-G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~---~~--~~~~~~~FD~  189 (340)
T PLN02244        117 KRPKRIVDVGCGI-GGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA---LN--QPFEDGQFDL  189 (340)
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc---cc--CCCCCCCccE
Confidence            6788999998865 6677788887788 899999998877766542    331 1  111111   00  1122347999


Q ss_pred             EEEccCC------hHHHHHHHHHhccCCceEEEec
Q 016660          273 CFECVGL------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       273 vid~~g~------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      |+-.-..      ...++++.+.|++| |++++..
T Consensus       190 V~s~~~~~h~~d~~~~l~e~~rvLkpG-G~lvi~~  223 (340)
T PLN02244        190 VWSMESGEHMPDKRKFVQELARVAAPG-GRIIIVT  223 (340)
T ss_pred             EEECCchhccCCHHHHHHHHHHHcCCC-cEEEEEE
Confidence            9864322      24578899999997 9988764

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.02  E-value=0.14  Score=45.60  Aligned_cols=43  Identities=19%  Similarity=0.155  Sum_probs=35.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg  246 (385)
                      .++||.|+ |++|...+..+...|+ +|+++++++++.+.+.+.+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~   45 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQS   45 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhc
Confidence            46899987 9999998888888899 7999999888777665443

>PRK12743 oxidoreductase; Provisional

Probab=95.02  E-value=0.22  Score=44.90  Aligned_cols=77  Identities=17%  Similarity=0.097  Sum_probs=46.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc-CCchHHHH----HHHcCCC-eE--EeCCCCCchhH-HHHhhC--CC
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEI----GKRFGVT-EF--VNSKNCGDKSI-IIDMTD--GG  269 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~-~~~~~~~~----~~~lg~~-~v--v~~~~~~~~~~-i~~~~~--g~  269 (385)
                      +.++||.|+ |++|..+++.+...|+ +|+.+. ++.++.+.    ++..|.. ++  .|..+...... +.+...  +.
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR   80 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            468999987 9999999999999999 776664 34443332    2334543 22  23333111111 222211  36


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|.+.|.
T Consensus        81 id~li~~ag~   90 (256)
T PRK12743         81 IDVLVNNAGA   90 (256)
T ss_pred             CCEEEECCCC
Confidence            8999998874

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.00  E-value=0.19  Score=46.34  Aligned_cols=92  Identities=22%  Similarity=0.240  Sum_probs=56.3

Q ss_pred             CEEEEEcCCHHHHH-HHHHHHHcCCCEEEEEcCCch--HHHHHHHcCCCeEEeCCCCCchhHHHHhhC-CCccEEEEccC
Q 016660          203 STVVIFGLGSIGLA-VAEGARLCGATRIIGVDVISE--KFEIGKRFGVTEFVNSKNCGDKSIIIDMTD-GGADYCFECVG  278 (385)
Q Consensus       203 ~~VlI~G~g~vG~~-ai~la~~~G~~~vi~~~~~~~--~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~-g~~d~vid~~g  278 (385)
                      -+|.|+|.|.+|.. +..+.+.-+.+-+.+++.+++  .+++++++|.....+     ..+.+.+... ..+|+||++++
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~-----~ie~LL~~~~~~dIDiVf~AT~   79 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAE-----GIDGLLAMPEFDDIDIVFDATS   79 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccC-----CHHHHHhCcCCCCCCEEEECCC
Confidence            46899999999987 445555556744444555443  446778888653321     1111222111 26999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEe
Q 016660          279 LASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      .....+.+..++..| -.++..
T Consensus        80 a~~H~e~a~~a~eaG-k~VID~  100 (302)
T PRK08300         80 AGAHVRHAAKLREAG-IRAIDL  100 (302)
T ss_pred             HHHHHHHHHHHHHcC-CeEEEC
Confidence            988677777777764 444443

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.00  E-value=0.27  Score=46.43  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .+.+|+|+|+|++|..+++.+-..|+.+++.+|.+
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35679999999999999999999999889988875

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.97  E-value=0.14  Score=48.63  Aligned_cols=78  Identities=13%  Similarity=0.057  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH-HHHHcC--CCeEEeCCCCCchhHHHHhhCC-CccEEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFG--VTEFVNSKNCGDKSIIIDMTDG-GADYCFE  275 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg--~~~vv~~~~~~~~~~i~~~~~g-~~d~vid  275 (385)
                      ++.+|||.|+ |.+|..+++.+...|+ +|+++++++.... ....++  ....+-.-+......+..+..+ ++|+||+
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih   81 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH   81 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence            4678999987 9999999999999999 7888877655322 112222  1111111121223335555555 7899999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      +++.
T Consensus        82 ~A~~   85 (349)
T TIGR02622        82 LAAQ   85 (349)
T ss_pred             CCcc
Confidence            9973

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK12367 short chain dehydrogenase; Provisional

Probab=94.96  E-value=0.2  Score=45.07  Aligned_cols=73  Identities=21%  Similarity=0.275  Sum_probs=47.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc-hHHHHHHHcCCCeE--EeCCCCCchhHHHHhhCCCccEEEEc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIGKRFGVTEF--VNSKNCGDKSIIIDMTDGGADYCFEC  276 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~~~~~lg~~~v--v~~~~~~~~~~i~~~~~g~~d~vid~  276 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++ +..+... .+....  .|..+   ...+.... +.+|++|++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~---~~~~~~~~-~~iDilVnn   86 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSESND-ESPNEWIKWECGK---EESLDKQL-ASLDVLILN   86 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhhhc-cCCCeEEEeeCCC---HHHHHHhc-CCCCEEEEC
Confidence            3678999987 9999999999999999 888887765 2222211 111222  23322   22233332 369999999


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      +|.
T Consensus        87 AG~   89 (245)
T PRK12367         87 HGI   89 (245)
T ss_pred             Ccc
Confidence            975

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.95  E-value=0.49  Score=41.26  Aligned_cols=93  Identities=17%  Similarity=0.177  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch-HHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~-~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      .|.+|||+|+|.+|..-++.+...|+ .|++++.... .++.+.+.|--..+ ..+  +..   ... .++|+||-+.+.
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~i~~~-~~~--~~~---~dl-~~~~lVi~at~d   79 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGGITWL-ARC--FDA---DIL-EGAFLVIAATDD   79 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCCEEEE-eCC--CCH---HHh-CCcEEEEECCCC
Confidence            46799999999999999999999999 7888865432 22333333311111 122  111   111 268999999999


Q ss_pred             hHHHHHHHHHhccCCceEEEecc
Q 016660          280 ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +..-.......+.. |..|....
T Consensus        80 ~~ln~~i~~~a~~~-~ilvn~~d  101 (205)
T TIGR01470        80 EELNRRVAHAARAR-GVPVNVVD  101 (205)
T ss_pred             HHHHHHHHHHHHHc-CCEEEECC
Confidence            87334455555554 77776654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.93  E-value=0.26  Score=46.52  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      ...+|+|+|+|++|-.+++.+...|..+++.+|.+
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45779999999999999999999999999999875

>PLN02780 ketoreductase/ oxidoreductase

Probab=94.93  E-value=0.12  Score=48.40  Aligned_cols=77  Identities=18%  Similarity=0.189  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-----cC-CC---eEEeCCCCCchh---HHHHhhC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FG-VT---EFVNSKNCGDKS---IIIDMTD  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-----lg-~~---~vv~~~~~~~~~---~i~~~~~  267 (385)
                      .|.++||.|+ +++|...++.+...|+ +|+.+++++++.+.+.+     .+ ..   ..+|..+ +...   .+.+..+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~l~~~~~  129 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG-DIDEGVKRIKETIE  129 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC-CcHHHHHHHHHHhc
Confidence            4789999997 9999998888888899 79989998887664321     22 11   1234433 1122   2334444


Q ss_pred             C-CccEEEEccCC
Q 016660          268 G-GADYCFECVGL  279 (385)
Q Consensus       268 g-~~d~vid~~g~  279 (385)
                      + .+|++++++|.
T Consensus       130 ~~didilVnnAG~  142 (320)
T PLN02780        130 GLDVGVLINNVGV  142 (320)
T ss_pred             CCCccEEEEecCc
Confidence            4 57799998873

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=94.91  E-value=0.26  Score=43.24  Aligned_cols=35  Identities=26%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      ...+|+|+|+|++|-..++.+-..|..+++.+|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45679999999999999999999999889999866

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.91  E-value=0.2  Score=44.72  Aligned_cols=78  Identities=17%  Similarity=0.083  Sum_probs=46.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEE-EcCCchHHHH----HHHcCCCe-E--EeCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKFEI----GKRFGVTE-F--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~-~~~~~~~~~~----~~~lg~~~-v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      ++.++||.|+ |.+|...+..+...|+ +|+. ..++.++.+.    +++.+... .  .|..+...... +.+..  .+
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG   81 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4578999987 9999999999999999 6655 4555554432    23344432 2  22222111111 21221  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|++.|.
T Consensus        82 ~id~vi~~ag~   92 (250)
T PRK08063         82 RLDVFVNNAAS   92 (250)
T ss_pred             CCCEEEECCCC
Confidence            68999998874

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.91  E-value=0.37  Score=43.34  Aligned_cols=91  Identities=19%  Similarity=0.275  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc-------------------hHHH----HHHHcCCC-eEEeCCCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-------------------EKFE----IGKRFGVT-EFVNSKNC  256 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~-------------------~~~~----~~~~lg~~-~vv~~~~~  256 (385)
                      .+.+|+|+|+|++|..+++.+...|..+++.+|.+.                   .|.+    .++++... .+......
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~  110 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR  110 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence            457899999999999999999999998888886542                   1111    22233322 22222221


Q ss_pred             CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhcc
Q 016660          257 GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRK  292 (385)
Q Consensus       257 ~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~  292 (385)
                      -....+.++. ..+|+||||..........-+....
T Consensus       111 i~~~~~~~~~-~~~DiVi~~~D~~~~r~~ln~~~~~  145 (245)
T PRK05690        111 LDDDELAALI-AGHDLVLDCTDNVATRNQLNRACFA  145 (245)
T ss_pred             CCHHHHHHHH-hcCCEEEecCCCHHHHHHHHHHHHH
Confidence            1111222222 2699999999988754434444444

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=94.90  E-value=0.42  Score=46.84  Aligned_cols=102  Identities=20%  Similarity=0.287  Sum_probs=64.2

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHH----HcCCCeE--EeCCCCCchhHHHHhhCC
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGK----RFGVTEF--VNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~----~lg~~~v--v~~~~~~~~~~i~~~~~g  268 (385)
                      ..+++++++||=.|+|+ |..+++++..++ -.+|++++.++++++.++    .+|.+.+  +..+.    ..+.....+
T Consensus       232 ~l~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da----~~l~~~~~~  306 (431)
T PRK14903        232 LMELEPGLRVLDTCAAP-GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA----ERLTEYVQD  306 (431)
T ss_pred             HhCCCCCCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch----hhhhhhhhc
Confidence            45678899988887755 445556666552 238999999999988765    4666532  22111    112222234


Q ss_pred             CccEEE-E--ccCCh-------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          269 GADYCF-E--CVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       269 ~~d~vi-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      .||.|+ |  |+|..                         ..+..+++.+++| |.+++.-.+
T Consensus       307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYsTCs  368 (431)
T PRK14903        307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG-GILLYSTCT  368 (431)
T ss_pred             cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEECC
Confidence            699886 3  44432                         2256788999997 998765543

>PLN02823 spermine synthase

Probab=94.88  E-value=0.33  Score=45.72  Aligned_cols=98  Identities=16%  Similarity=0.163  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC-C-eEEe-CC----CCCchhHHHHhhCCCccEE
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-T-EFVN-SK----NCGDKSIIIDMTDGGADYC  273 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~-~vv~-~~----~~~~~~~i~~~~~g~~d~v  273 (385)
                      ...+|||+|+|. |..+..+++..+.++|++++.+++-.++++++-. . ..++ .+    -.+....+ +...+.||+|
T Consensus       103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L-~~~~~~yDvI  180 (336)
T PLN02823        103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL-EKRDEKFDVI  180 (336)
T ss_pred             CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH-hhCCCCccEE
Confidence            456899998764 5566778887777799999999999999887421 1 0110 00    00011112 2233479998


Q ss_pred             E-EccC-----------ChHHHH-HHHHHhccCCceEEEec
Q 016660          274 F-ECVG-----------LASLVQ-EAYACCRKGWGKTIVLG  301 (385)
Q Consensus       274 i-d~~g-----------~~~~~~-~~~~~l~~~~G~~v~~g  301 (385)
                      | |+..           +.+.++ .+.+.|+++ |.++.-.
T Consensus       181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~-Gvlv~q~  220 (336)
T PLN02823        181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG-GIFVTQA  220 (336)
T ss_pred             EecCCCccccCcchhhccHHHHHHHHHHhcCCC-cEEEEec
Confidence            5 5321           123455 788999997 9887543

>PRK07574 formate dehydrogenase; Provisional

Probab=94.88  E-value=0.13  Score=49.31  Aligned_cols=89  Identities=20%  Similarity=0.200  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++....+..+.+|+...   .+      +.++.. ..|+|+-+.+..
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g~~~~---~~------l~ell~-~aDvV~l~lPlt  259 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELGLTYH---VS------FDSLVS-VCDVVTIHCPLH  259 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcCceec---CC------HHHHhh-cCCEEEEcCCCC
Confidence            57889999999999999999999999 89999887644444444553211   11      122221 367777766633


Q ss_pred             HH----H-HHHHHHhccCCceEEEec
Q 016660          281 SL----V-QEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       281 ~~----~-~~~~~~l~~~~G~~v~~g  301 (385)
                      ..    + .+.+..|+++ ..+|.++
T Consensus       260 ~~T~~li~~~~l~~mk~g-a~lIN~a  284 (385)
T PRK07574        260 PETEHLFDADVLSRMKRG-SYLVNTA  284 (385)
T ss_pred             HHHHHHhCHHHHhcCCCC-cEEEECC
Confidence            21    1 2456677775 6666665

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=94.86  E-value=0.33  Score=38.78  Aligned_cols=95  Identities=18%  Similarity=0.203  Sum_probs=58.0

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcC--CCEEEEEcCCchH---HHHHHHcCCCeEEeCCCCCchh------------------
Q 016660          205 VVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEK---FEIGKRFGVTEFVNSKNCGDKS------------------  260 (385)
Q Consensus       205 VlI~G~-g~vG~~ai~la~~~G--~~~vi~~~~~~~~---~~~~~~lg~~~vv~~~~~~~~~------------------  260 (385)
                      |.|+|+ |++|.-++.+.+...  + +|++......-   .+.+++|....++-.++.....                  
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~   79 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGP   79 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh
Confidence            578898 999999999999886  6 67776543332   2345568877776554421111                  


Q ss_pred             -HHHHhhC-CCccEEEEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          261 -IIIDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       261 -~i~~~~~-g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                       .+.+... ..+|+|+.++-+-..+...+..++.  |+-+.+.+
T Consensus        80 ~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~--gk~iaLAN  121 (129)
T PF02670_consen   80 EGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKA--GKDIALAN  121 (129)
T ss_dssp             HHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHT--TSEEEE--
T ss_pred             HHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHC--CCeEEEec
Confidence             1223333 3688888888777778888888887  45555443

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.86  E-value=0.16  Score=42.46  Aligned_cols=88  Identities=23%  Similarity=0.221  Sum_probs=58.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLV  283 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~  283 (385)
                      +|-++|.|.+|...++-+...|+ .|.+.++++++.+.+.+.|+... +     ....+.+    ..|+||-|+......
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~~~-~-----s~~e~~~----~~dvvi~~v~~~~~v   71 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAEVA-D-----SPAEAAE----QADVVILCVPDDDAV   71 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEEEE-S-----SHHHHHH----HBSEEEE-SSSHHHH
T ss_pred             EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhhhh-h-----hhhhHhh----cccceEeecccchhh
Confidence            68899999999999998889999 89999999999998888774322 1     1111111    258999998887656


Q ss_pred             HHHHH------HhccCCceEEEeccC
Q 016660          284 QEAYA------CCRKGWGKTIVLGVD  303 (385)
Q Consensus       284 ~~~~~------~l~~~~G~~v~~g~~  303 (385)
                      +..+.      .+.++ ..++.++..
T Consensus        72 ~~v~~~~~i~~~l~~g-~iiid~sT~   96 (163)
T PF03446_consen   72 EAVLFGENILAGLRPG-KIIIDMSTI   96 (163)
T ss_dssp             HHHHHCTTHGGGS-TT-EEEEE-SS-
T ss_pred             hhhhhhhHHhhccccc-eEEEecCCc
Confidence            55444      34554 556666543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK04266 fibrillarin; Provisional

Probab=94.85  E-value=0.39  Score=42.61  Aligned_cols=102  Identities=13%  Similarity=0.144  Sum_probs=61.6

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC--C--eEEeCCCCCchhHHHHhhCCCc
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--T--EFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--~--~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      +...++++++||=+|+|. |..+..+++..+-.+|++++.+++.++.+.+...  +  ..+..+. ........+ .+.+
T Consensus        66 ~~l~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~-~~~~~~~~l-~~~~  142 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADA-RKPERYAHV-VEKV  142 (226)
T ss_pred             hhCCCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCC-CCcchhhhc-cccC
Confidence            346889999999888754 4556667776643389999999877664432211  1  2221111 110000111 2359


Q ss_pred             cEEEEccCCh----HHHHHHHHHhccCCceEEEe
Q 016660          271 DYCFECVGLA----SLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       271 d~vid~~g~~----~~~~~~~~~l~~~~G~~v~~  300 (385)
                      |+|+.-...+    ..++.+.+.|+++ |+++..
T Consensus       143 D~i~~d~~~p~~~~~~L~~~~r~LKpG-G~lvI~  175 (226)
T PRK04266        143 DVIYQDVAQPNQAEIAIDNAEFFLKDG-GYLLLA  175 (226)
T ss_pred             CEEEECCCChhHHHHHHHHHHHhcCCC-cEEEEE
Confidence            9998544432    2367888999997 998874

>PRK08328 hypothetical protein; Provisional

Probab=94.85  E-value=0.36  Score=42.98  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .+.+|+|+|+|++|-.+++.+...|..+++.+|.+
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45679999999999999999999999999888743

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.84  E-value=0.25  Score=43.85  Aligned_cols=36  Identities=31%  Similarity=0.335  Sum_probs=28.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      ++.++||.|+ |.+|...+..+...|+ +|+++.++..
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~   40 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSE   40 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            4568999987 9999999999998999 6755555443

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.83  E-value=0.37  Score=42.81  Aligned_cols=101  Identities=19%  Similarity=0.140  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc-------------------hHHH----HHHHcCCC-eEEeCCCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-------------------EKFE----IGKRFGVT-EFVNSKNC  256 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~-------------------~~~~----~~~~lg~~-~vv~~~~~  256 (385)
                      .+.+|+|+|+|++|..++..+-..|..+++.+|.+.                   .|.+    .++++... .+-.....
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~   99 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER   99 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence            357899999999999999999999998888885432                   1222    22233322 22222221


Q ss_pred             CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          257 GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       257 ~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      -....+.++.. ++|+||+|...........+.....+-.++..|.
T Consensus       100 i~~~~~~~~~~-~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~  144 (228)
T cd00757         100 LDAENAEELIA-GYDLVLDCTDNFATRYLINDACVKLGKPLVSGAV  144 (228)
T ss_pred             eCHHHHHHHHh-CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence            11122333322 5999999999887544444444443123444443

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.83  E-value=0.4  Score=40.65  Aligned_cols=33  Identities=27%  Similarity=0.226  Sum_probs=29.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      +|+|+|+|++|-..++.+-..|..+++.+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            489999999999999999899998899998664

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07775 short chain dehydrogenase; Provisional

Probab=94.82  E-value=0.26  Score=44.97  Aligned_cols=77  Identities=17%  Similarity=0.057  Sum_probs=47.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe-EEeCCCCCchhHHHHhh------CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FVNSKNCGDKSIIIDMT------DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-vv~~~~~~~~~~i~~~~------~g  268 (385)
                      +..++||+|+ |.+|...++.+...|+ +|+++.++.++.+..    +..+... ++.. +......+.++.      -+
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-Dl~~~~~~~~~~~~~~~~~~   86 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPL-DVTDPDSVKSFVAQAEEALG   86 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC-CCCCHHHHHHHHHHHHHhcC
Confidence            3468999997 9999999998888999 788887766554322    2234332 2211 212222222211      13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      +.|++|.++|.
T Consensus        87 ~id~vi~~Ag~   97 (274)
T PRK07775         87 EIEVLVSGAGD   97 (274)
T ss_pred             CCCEEEECCCc
Confidence            68999999875

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=94.81  E-value=0.25  Score=45.28  Aligned_cols=97  Identities=13%  Similarity=0.161  Sum_probs=63.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC-Ce--EEeCCCC---CchhHHHHhhCCCccEEE-E
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TE--FVNSKNC---GDKSIIIDMTDGGADYCF-E  275 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~~--vv~~~~~---~~~~~i~~~~~g~~d~vi-d  275 (385)
                      .+|||+|.|. |-.+-.++|+...+++++++.+++=.++++++-. ..  ..|++-.   ++.....+.+..+||+|| |
T Consensus        78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D  156 (282)
T COG0421          78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD  156 (282)
T ss_pred             CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence            4899997654 5566788888888899999999999999987321 11  0011110   011112222333799985 5


Q ss_pred             ccCC---------hHHHHHHHHHhccCCceEEEec
Q 016660          276 CVGL---------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       276 ~~g~---------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +...         .+..+.+.++|+++ |.++.-+
T Consensus       157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~-Gi~v~q~  190 (282)
T COG0421         157 STDPVGPAEALFTEEFYEGCRRALKED-GIFVAQA  190 (282)
T ss_pred             CCCCCCcccccCCHHHHHHHHHhcCCC-cEEEEec
Confidence            4433         46678999999997 9988773

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=94.81  E-value=0.42  Score=46.77  Aligned_cols=103  Identities=11%  Similarity=0.167  Sum_probs=63.8

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC-eE--EeCCCCCchhHHHHh-h
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSIIIDM-T  266 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~v--v~~~~~~~~~~i~~~-~  266 (385)
                      ...++.++++||=+|+|+ |..++.+++.++-.+|++++.++++++.++    .+|.. .+  .+.+.  .  ....+ .
T Consensus       232 ~~L~~~~g~~VLDlcag~-G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~--~--~~~~~~~  306 (426)
T TIGR00563       232 TWLAPQNEETILDACAAP-GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG--R--GPSQWAE  306 (426)
T ss_pred             HHhCCCCCCeEEEeCCCc-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc--c--ccccccc
Confidence            345678899999888654 444555566554238999999999887654    46664 22  22111  0  01111 1


Q ss_pred             CCCccEEE-E--ccCCh-------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          267 DGGADYCF-E--CVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       267 ~g~~d~vi-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      .+.||.|| |  |+|..                         ..+..+++.+++| |++++.-.+
T Consensus       307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg-G~lvystcs  370 (426)
T TIGR00563       307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG-GTLVYATCS  370 (426)
T ss_pred             ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeCC
Confidence            23699986 4  45432                         3567789999997 999876443

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=94.81  E-value=0.15  Score=44.17  Aligned_cols=98  Identities=12%  Similarity=0.137  Sum_probs=58.8

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhCCCc
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      ......++.+||-+|+|. |..+..+++ .|. .|+++|.+++-.+.+++    .+........+  ...  ..+ .+.+
T Consensus        24 ~~~~~~~~~~vLDiGcG~-G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d--~~~--~~~-~~~f   95 (195)
T TIGR00477        24 EAVKTVAPCKTLDLGCGQ-GRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYD--INA--AAL-NEDY   95 (195)
T ss_pred             HHhccCCCCcEEEeCCCC-CHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEecc--chh--ccc-cCCC
Confidence            334455567899998755 666667776 477 89999999887766543    23221111111  100  011 2369


Q ss_pred             cEEEEccC-----C---hHHHHHHHHHhccCCceEEEec
Q 016660          271 DYCFECVG-----L---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       271 d~vid~~g-----~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      |+|+....     .   ...++.+.+.|+++ |.++.+.
T Consensus        96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lli~~  133 (195)
T TIGR00477        96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPG-GYNLIVA  133 (195)
T ss_pred             CEEEEecccccCCHHHHHHHHHHHHHHhCCC-cEEEEEE
Confidence            99976422     1   24577888999997 9865543

Part of a tellurite-reducing operon tehA and tehB

>PRK08251 short chain dehydrogenase; Provisional

Probab=94.80  E-value=0.24  Score=44.27  Aligned_cols=76  Identities=16%  Similarity=0.215  Sum_probs=47.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----c--CCC-eE--EeCCCCCchhH-HHHhh--CC
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F--GVT-EF--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----l--g~~-~v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      +.++||.|+ |++|...++.+...|+ +|+.+++++++.+.+.+    .  +.. ++  .|..+...... +.+..  -+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467999987 9999998888888898 88888888776554322    1  221 22  23333211111 22222  13


Q ss_pred             CccEEEEccC
Q 016660          269 GADYCFECVG  278 (385)
Q Consensus       269 ~~d~vid~~g  278 (385)
                      +.|++|.+.|
T Consensus        81 ~id~vi~~ag   90 (248)
T PRK08251         81 GLDRVIVNAG   90 (248)
T ss_pred             CCCEEEECCC
Confidence            6899999887

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.79  E-value=0.19  Score=45.83  Aligned_cols=78  Identities=15%  Similarity=0.236  Sum_probs=48.2

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCEEEEEcCCchHHH----HHHHcCCCeE--EeCCCCCchhH-HHHhhC--C
Q 016660          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFE----IGKRFGVTEF--VNSKNCGDKSI-IIDMTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~~~~~----~~~~lg~~~v--v~~~~~~~~~~-i~~~~~--g  268 (385)
                      ++.++||.|+ +  ++|.+.++.+...|+ +|+.++++++..+    +.+++|....  .|..+...... +.....  |
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG   84 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            5678999997 4  899999999989999 7888877643222    2233454322  23333211111 222222  4


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      .+|++++++|.
T Consensus        85 ~iD~lVnnAG~   95 (271)
T PRK06505         85 KLDFVVHAIGF   95 (271)
T ss_pred             CCCEEEECCcc
Confidence            69999999873

>PLN02476 O-methyltransferase

Probab=94.78  E-value=0.24  Score=45.22  Aligned_cols=104  Identities=16%  Similarity=0.173  Sum_probs=65.5

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHHHhh---
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIIIDMT---  266 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~~~---  266 (385)
                      ...+..+..+||=+|.+. |..++.+|+.++- .+|+.++.+++..+.++    +.|..+-+.....+..+.+.++.   
T Consensus       112 ~L~~~~~ak~VLEIGT~t-GySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~  190 (278)
T PLN02476        112 MLVQILGAERCIEVGVYT-GYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNG  190 (278)
T ss_pred             HHHHhcCCCeEEEecCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc
Confidence            345567788999998633 6667777776631 27999999998887765    45654322222222233333332   


Q ss_pred             -CCCccEEE-EccCC--hHHHHHHHHHhccCCceEEEe
Q 016660          267 -DGGADYCF-ECVGL--ASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       267 -~g~~d~vi-d~~g~--~~~~~~~~~~l~~~~G~~v~~  300 (385)
                       .+.||.|| |.--.  ...++.+++++++| |.++.=
T Consensus       191 ~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G-GvIV~D  227 (278)
T PLN02476        191 EGSSYDFAFVDADKRMYQDYFELLLQLVRVG-GVIVMD  227 (278)
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEe
Confidence             23799996 44322  34477899999997 887653

>PRK05717 oxidoreductase; Validated

Probab=94.75  E-value=0.24  Score=44.58  Aligned_cols=78  Identities=18%  Similarity=0.246  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCe-E--EeCCCCCchhH-HHHhhC--CCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTE-F--VNSKNCGDKSI-IIDMTD--GGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~-v--v~~~~~~~~~~-i~~~~~--g~~d~  272 (385)
                      ++.++||.|+ |.+|..++..+...|+ +|+.++++.++.+. .++++... .  .|..+...... +.+...  +.+|+
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   87 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDA   87 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4678999987 9999999998888899 88888777655443 34454321 1  23333111111 222222  35899


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|.+.|.
T Consensus        88 li~~ag~   94 (255)
T PRK05717         88 LVCNAAI   94 (255)
T ss_pred             EEECCCc
Confidence            9998874

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.74  E-value=0.14  Score=46.15  Aligned_cols=78  Identities=14%  Similarity=0.155  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCC---HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC--eE--EeCCCCCchhH-HHHhhC--CCc
Q 016660          201 VGSTVVIFGLG---SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EF--VNSKNCGDKSI-IIDMTD--GGA  270 (385)
Q Consensus       201 ~~~~VlI~G~g---~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--~v--v~~~~~~~~~~-i~~~~~--g~~  270 (385)
                      .+.++||.|++   ++|...++.+...|+ +|+.+.++++..+.++++...  ..  .|..+...... +.....  +.+
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   84 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKI   84 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence            57889999874   899999988888999 788887765444444444221  12  23333111111 222221  469


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++++++|.
T Consensus        85 D~lv~nAg~   93 (252)
T PRK06079         85 DGIVHAIAY   93 (252)
T ss_pred             CEEEEcccc
Confidence            999998873

>PRK07791 short chain dehydrogenase; Provisional

Probab=94.74  E-value=0.32  Score=44.79  Aligned_cols=36  Identities=33%  Similarity=0.362  Sum_probs=29.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .++.++||.|+ +++|...++.+...|+ +|+.++++.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~   40 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGV   40 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCc
Confidence            45789999987 9999999988888999 777776543

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=94.73  E-value=0.26  Score=43.99  Aligned_cols=78  Identities=15%  Similarity=0.176  Sum_probs=45.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCCch-HHHHH---HHcCCCeE---EeCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISE-KFEIG---KRFGVTEF---VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~-~~~~~-~~~~~---~~lg~~~v---v~~~~~~~~~~-i~~~~--~g  268 (385)
                      ++.++||+|+ |++|...++.+...|+ +|+.. .+.+. +.+++   ++.+....   .|..+...... +.+..  -+
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG   80 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            3578899987 9999999999999999 66664 33332 22222   23454332   23322111111 22211  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      +.|++|++.|.
T Consensus        81 ~id~li~~ag~   91 (246)
T PRK12938         81 EIDVLVNNAGI   91 (246)
T ss_pred             CCCEEEECCCC
Confidence            78999999985

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=94.73  E-value=0.23  Score=46.35  Aligned_cols=89  Identities=16%  Similarity=0.191  Sum_probs=56.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      ..+.+|.|+|.|.+|...++.++.+|+ +|++.+++.++..     +........+      +.++.. ..|+|+.+.+.
T Consensus       134 l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~~-----~~~~~~~~~~------l~e~l~-~aDvvv~~lPl  200 (312)
T PRK15469        134 REDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSWP-----GVQSFAGREE------LSAFLS-QTRVLINLLPN  200 (312)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCCC-----Cceeeccccc------HHHHHh-cCCEEEECCCC
Confidence            357899999999999999999999999 8999876544321     2221111111      222222 36888777764


Q ss_pred             hHH----H-HHHHHHhccCCceEEEecc
Q 016660          280 ASL----V-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~~----~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      ...    + ...+..|+++ ..+|.+|-
T Consensus       201 t~~T~~li~~~~l~~mk~g-a~lIN~aR  227 (312)
T PRK15469        201 TPETVGIINQQLLEQLPDG-AYLLNLAR  227 (312)
T ss_pred             CHHHHHHhHHHHHhcCCCC-cEEEECCC
Confidence            432    1 2456677776 77777663

>PLN02256 arogenate dehydrogenase

Probab=94.72  E-value=0.51  Score=43.89  Aligned_cols=97  Identities=13%  Similarity=0.169  Sum_probs=61.8

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccE
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADY  272 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~  272 (385)
                      +.+...-....+|.|+|.|.+|...+..++..|. .|+++++++. .+.++++|+..   ..+  .    .+......|+
T Consensus        27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv~~---~~~--~----~e~~~~~aDv   95 (304)
T PLN02256         27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGVSF---FRD--P----DDFCEEHPDV   95 (304)
T ss_pred             HhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCCee---eCC--H----HHHhhCCCCE
Confidence            4455555567789999999999999888888887 8888887764 45566677632   111  1    1111124788


Q ss_pred             EEEccCChHHHHHHHHH-----hccCCceEEEecc
Q 016660          273 CFECVGLASLVQEAYAC-----CRKGWGKTIVLGV  302 (385)
Q Consensus       273 vid~~g~~~~~~~~~~~-----l~~~~G~~v~~g~  302 (385)
                      ||-|+.... ....++.     ++++ ..++.++.
T Consensus        96 Vilavp~~~-~~~vl~~l~~~~l~~~-~iviDv~S  128 (304)
T PLN02256         96 VLLCTSILS-TEAVLRSLPLQRLKRS-TLFVDVLS  128 (304)
T ss_pred             EEEecCHHH-HHHHHHhhhhhccCCC-CEEEecCC
Confidence            888887654 3333332     3454 55555554

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=94.71  E-value=0.14  Score=42.54  Aligned_cols=77  Identities=26%  Similarity=0.217  Sum_probs=46.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC--chHHH-H---HHHcCCCeEEeCCCCCchhH----HHHhh--CCC
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI--SEKFE-I---GKRFGVTEFVNSKNCGDKSI----IIDMT--DGG  269 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~--~~~~~-~---~~~lg~~~vv~~~~~~~~~~----i~~~~--~g~  269 (385)
                      +++||+|+ +++|...++.+...|..+|+.+.++  .++.+ +   ++..+....+-.-+......    +....  .+.
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            36899987 9999998888877777688888887  33333 2   23345322221112122222    22222  236


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|.+.|.
T Consensus        81 ld~li~~ag~   90 (167)
T PF00106_consen   81 LDILINNAGI   90 (167)
T ss_dssp             ESEEEEECSC
T ss_pred             cccccccccc
Confidence            8999998886

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.70  E-value=0.28  Score=43.62  Aligned_cols=77  Identities=21%  Similarity=0.290  Sum_probs=46.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCCchHHHHHH----HcCCCeEEeCCCCCchhHHHH----hhC--CC
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIGK----RFGVTEFVNSKNCGDKSIIID----MTD--GG  269 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~----~~~--g~  269 (385)
                      +.++||.|+ |.+|...+..+...|+ +|+.+ ++++++.+.+.    ..+....+..-+......+..    ...  ++
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGK   83 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            468999987 9999998888888899 67777 77766554322    222221121222122222222    111  36


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|+||.+.|.
T Consensus        84 id~vi~~ag~   93 (247)
T PRK05565         84 IDILVNNAGI   93 (247)
T ss_pred             CCEEEECCCc
Confidence            9999998874

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.70  E-value=0.29  Score=45.58  Aligned_cols=78  Identities=22%  Similarity=0.300  Sum_probs=47.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc-hHHH-H---HHHcCCCeEEeCCCCCchhHHHHhh-----CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE-I---GKRFGVTEFVNSKNCGDKSIIIDMT-----DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~-~---~~~lg~~~vv~~~~~~~~~~i~~~~-----~g~  269 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++.. ++.+ .   ++..|....+..-+......+..+.     -+.
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~   89 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGG   89 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            5678999987 9999999888888899 788876543 2222 2   2233433222222222222221111     247


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        90 iD~li~nAG~   99 (306)
T PRK07792         90 LDIVVNNAGI   99 (306)
T ss_pred             CCEEEECCCC
Confidence            9999998874

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=94.70  E-value=0.27  Score=43.34  Aligned_cols=93  Identities=22%  Similarity=0.306  Sum_probs=62.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe--EEeCCCCCchhHHHHhhC--CCccEEEE
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSIIIDMTD--GGADYCFE  275 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~--vv~~~~~~~~~~i~~~~~--g~~d~vid  275 (385)
                      -++.+||=+|+|+ |+++.-+|+ .|+ +|+++|.+++.++.++.-....  -++|....    +.++..  +.||+|+.
T Consensus        58 l~g~~vLDvGCGg-G~Lse~mAr-~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~----~edl~~~~~~FDvV~c  130 (243)
T COG2227          58 LPGLRVLDVGCGG-GILSEPLAR-LGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQAT----VEDLASAGGQFDVVTC  130 (243)
T ss_pred             CCCCeEEEecCCc-cHhhHHHHH-CCC-eeEEecCChHHHHHHHHhhhhccccccchhhh----HHHHHhcCCCccEEEE
Confidence            4788899999865 566666655 467 9999999999999887422211  13454422    333333  37999986


Q ss_pred             c-----cCCh-HHHHHHHHHhccCCceEEEe
Q 016660          276 C-----VGLA-SLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       276 ~-----~g~~-~~~~~~~~~l~~~~G~~v~~  300 (385)
                      .     +..+ ..+..+.++++++ |.++..
T Consensus       131 mEVlEHv~dp~~~~~~c~~lvkP~-G~lf~S  160 (243)
T COG2227         131 MEVLEHVPDPESFLRACAKLVKPG-GILFLS  160 (243)
T ss_pred             hhHHHccCCHHHHHHHHHHHcCCC-cEEEEe
Confidence            3     3333 3467899999997 877654

>PRK08703 short chain dehydrogenase; Provisional

Probab=94.69  E-value=0.25  Score=43.90  Aligned_cols=40  Identities=28%  Similarity=0.345  Sum_probs=34.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  241 (385)
                      ++.+++|+|+ |++|...++.+...|+ +|+++++++++.+.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~   45 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEK   45 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHH
Confidence            4578999987 9999999999888999 79999888876553

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.69  E-value=0.38  Score=44.79  Aligned_cols=95  Identities=17%  Similarity=0.079  Sum_probs=56.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc-CCCeEEeCCCCCchhHHHHhh---CCCccEEEEccCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTEFVNSKNCGDKSIIIDMT---DGGADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-g~~~vv~~~~~~~~~~i~~~~---~g~~d~vid~~g~  279 (385)
                      +|+|+|+|++|.+....+...|. .|..+++..++.+..++- |.. +.+..+..... +...+   .+.+|+||-|+=+
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~~~~~~-~~~~~~~~~~~~D~viv~vK~   80 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLT-LVEQGQASLYA-IPAETADAAEPIHRLLLACKA   80 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeE-EeeCCcceeec-cCCCCcccccccCEEEEECCH
Confidence            59999999999887777777888 788888877777766542 431 22111100000 00111   1268999988765


Q ss_pred             hH---HHHHHHHHhccCCceEEEecc
Q 016660          280 AS---LVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~---~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ..   +++.+...+.++ ..++.+-+
T Consensus        81 ~~~~~al~~l~~~l~~~-t~vv~lQN  105 (305)
T PRK05708         81 YDAEPAVASLAHRLAPG-AELLLLQN  105 (305)
T ss_pred             HhHHHHHHHHHhhCCCC-CEEEEEeC
Confidence            43   234444556665 66666543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.69  E-value=0.25  Score=50.84  Aligned_cols=78  Identities=17%  Similarity=0.263  Sum_probs=58.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      .+.|+|.|.|.+|+..++.++..|. ++++++.++++.+.+++.|.+.++ -+. ...+.+++..-..+|.++-++++++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~-GDa-t~~~~L~~agi~~A~~vvv~~~d~~  476 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVFY-GDA-TRMDLLESAGAAKAEVLINAIDDPQ  476 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEEE-EeC-CCHHHHHhcCCCcCCEEEEEeCCHH
Confidence            3679999999999999999999999 899999999999999998865332 222 2222233322227999999998876


Q ss_pred             H
Q 016660          282 L  282 (385)
Q Consensus       282 ~  282 (385)
                      .
T Consensus       477 ~  477 (621)
T PRK03562        477 T  477 (621)
T ss_pred             H
Confidence            3

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=94.69  E-value=0.25  Score=44.51  Aligned_cols=38  Identities=26%  Similarity=0.338  Sum_probs=31.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  240 (385)
                      +.++||+|+ |.+|...+..+...|+ +|+.++++.++.+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~   40 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAA   40 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            468999987 9999999998888899 8888888766544

>PLN00203 glutamyl-tRNA reductase

Probab=94.69  E-value=0.13  Score=51.41  Aligned_cols=74  Identities=18%  Similarity=0.308  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcC-CCe-EEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG-VTE-FVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg-~~~-vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      .+.+|+|+|+|.+|.++++.+...|+++|+++.++.++.+.+. +++ ... +....+      ..... ...|+||.|+
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~d------l~~al-~~aDVVIsAT  337 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDE------MLACA-AEADVVFTST  337 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhh------HHHHH-hcCCEEEEcc
Confidence            3688999999999999999999999878999999988876544 453 221 112111      11221 2689999998


Q ss_pred             CChH
Q 016660          278 GLAS  281 (385)
Q Consensus       278 g~~~  281 (385)
                      +.+.
T Consensus       338 ~s~~  341 (519)
T PLN00203        338 SSET  341 (519)
T ss_pred             CCCC
Confidence            7654

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.64  E-value=0.23  Score=43.68  Aligned_cols=79  Identities=20%  Similarity=0.175  Sum_probs=51.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc----------hHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS----------EKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~----------~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~  269 (385)
                      -.+.+|+|.|.|.+|..+++++...|.+.|.+++++.          +..+..++.+....+...+......+.   .-.
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~---~~~   97 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAIL---GLD   97 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccce---ecc
Confidence            4688999999999999999999999996666677766          666666555432221110100001111   115


Q ss_pred             ccEEEEccCChH
Q 016660          270 ADYCFECVGLAS  281 (385)
Q Consensus       270 ~d~vid~~g~~~  281 (385)
                      .|+++.|+....
T Consensus        98 ~DVlipaA~~~~  109 (217)
T cd05211          98 VDIFAPCALGNV  109 (217)
T ss_pred             ccEEeeccccCc
Confidence            788888887654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK06484 short chain dehydrogenase; Validated

Probab=94.62  E-value=0.2  Score=50.31  Aligned_cols=78  Identities=17%  Similarity=0.224  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCe---EEeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTE---FVNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~---vv~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      ++.++||+|+ +++|...++.+...|+ +|+.++++.++.+. .++++...   .+|..+...... +....  -+++|+
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV   82 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            5678999987 9999999999999999 89999888777654 34455432   233333211111 22221  136999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|++.|.
T Consensus        83 li~nag~   89 (520)
T PRK06484         83 LVNNAGV   89 (520)
T ss_pred             EEECCCc
Confidence            9999874

>TIGR00417 speE spermidine synthase

Probab=94.59  E-value=0.5  Score=43.18  Aligned_cols=97  Identities=14%  Similarity=0.130  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC--------CeEEeCCCCCchhHHHHhhCCCccE
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--------TEFVNSKNCGDKSIIIDMTDGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--------~~vv~~~~~~~~~~i~~~~~g~~d~  272 (385)
                      ...+||++|+|. |..+..+++.....++++++.+++-.+.+++.-.        ..+ +....+....+. ...+.||+
T Consensus        72 ~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v-~i~~~D~~~~l~-~~~~~yDv  148 (270)
T TIGR00417        72 NPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRV-DLQIDDGFKFLA-DTENTFDV  148 (270)
T ss_pred             CCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCce-EEEECchHHHHH-hCCCCccE
Confidence            445999998865 4456667776656689999998887777765310        111 100111111122 22347999


Q ss_pred             EEE-cc---C------ChHHHHHHHHHhccCCceEEEec
Q 016660          273 CFE-CV---G------LASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       273 vid-~~---g------~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ||- ..   +      ..+.++.+.+.|+++ |.++...
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pg-G~lv~~~  186 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNED-GIFVAQS  186 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCC-cEEEEcC
Confidence            864 32   1      234467889999997 9998764

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.59  E-value=0.24  Score=44.77  Aligned_cols=78  Identities=15%  Similarity=0.326  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCC---HHHHHHHHHHHHcCCCEEEEEcCCchHHH----HHHHcCCCeEE--eCCCCCchhH-HHHhhC--C
Q 016660          201 VGSTVVIFGLG---SIGLAVAEGARLCGATRIIGVDVISEKFE----IGKRFGVTEFV--NSKNCGDKSI-IIDMTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~g---~vG~~ai~la~~~G~~~vi~~~~~~~~~~----~~~~lg~~~vv--~~~~~~~~~~-i~~~~~--g  268 (385)
                      ++.++||.|++   ++|...++.+...|+ +|+.++++++..+    ..++++...++  |..+...... +.....  |
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   87 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG   87 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence            46889999863   899999988888999 7888877654322    22334432232  3222111111 222211  4


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      .+|++|+++|.
T Consensus        88 ~ld~lv~nAg~   98 (258)
T PRK07533         88 RLDFLLHSIAF   98 (258)
T ss_pred             CCCEEEEcCcc
Confidence            68999998873

>PRK06483 dihydromonapterin reductase; Provisional

Probab=94.58  E-value=0.22  Score=44.11  Aligned_cols=77  Identities=16%  Similarity=0.070  Sum_probs=48.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH-HHHHHHcCCCe-EEeCCCCCchhH-HHHhhC--CCccEEEE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGVTE-FVNSKNCGDKSI-IIDMTD--GGADYCFE  275 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~lg~~~-vv~~~~~~~~~~-i~~~~~--g~~d~vid  275 (385)
                      +.++||.|+ |++|...++.+...|+ +|+.++++++. .+.+++.++.. ..|..+...... +.....  +++|++++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~   80 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIH   80 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEE
Confidence            457999987 9999999999888999 88888876643 33344455432 133333222111 222222  35899999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      +.|.
T Consensus        81 ~ag~   84 (236)
T PRK06483         81 NASD   84 (236)
T ss_pred             CCcc
Confidence            8874

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=94.57  E-value=0.49  Score=42.73  Aligned_cols=97  Identities=22%  Similarity=0.150  Sum_probs=67.0

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhh-CCCc
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMT-DGGA  270 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~-~g~~  270 (385)
                      +.......++.+||=+|+|. |.++..+++.. +. +|++++.++.-.+.+++.+.+.+ ..+       +..+. .+.|
T Consensus        21 ll~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~~~-~~d-------~~~~~~~~~f   90 (255)
T PRK14103         21 LLARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVDAR-TGD-------VRDWKPKPDT   90 (255)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCcEE-EcC-------hhhCCCCCCc
Confidence            33445667889999999866 67777888765 55 89999999998888877654422 111       11222 2379


Q ss_pred             cEEEEccC-----C-hHHHHHHHHHhccCCceEEEe
Q 016660          271 DYCFECVG-----L-ASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       271 d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      |+|+-...     . ...++.+.+.|+++ |.++..
T Consensus        91 D~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~  125 (255)
T PRK14103         91 DVVVSNAALQWVPEHADLLVRWVDELAPG-SWIAVQ  125 (255)
T ss_pred             eEEEEehhhhhCCCHHHHHHHHHHhCCCC-cEEEEE
Confidence            99986442     2 34577889999997 998764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.54  E-value=0.27  Score=49.97  Aligned_cols=76  Identities=11%  Similarity=0.202  Sum_probs=56.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +.++|.|.|.+|+..++.++..|. .++++|.++++.+.+++.|...+. -+. ...+.+++..-+.+|.++-++++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~-GD~-~~~~~L~~a~i~~a~~viv~~~~~~  493 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVL-GNA-ANEEIMQLAHLDCARWLLLTIPNGY  493 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEE-cCC-CCHHHHHhcCccccCEEEEEcCChH
Confidence            678999999999999999999998 899999999999999988865443 222 2222233322227898887776654

>PRK11579 putative oxidoreductase; Provisional

Probab=94.54  E-value=0.52  Score=44.74  Aligned_cols=126  Identities=16%  Similarity=0.107  Sum_probs=74.2

Q ss_pred             EEEEEcCCHHHH-HHHHHHH-HcCCCEEEE-EcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          204 TVVIFGLGSIGL-AVAEGAR-LCGATRIIG-VDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~g~vG~-~ai~la~-~~G~~~vi~-~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      +|.|+|.|.+|. ..+...+ .-++ ++++ .++++++.+  .+++...++  .+      ..++... .+|+|+-|++.
T Consensus         6 rvgiiG~G~i~~~~~~~~~~~~~~~-~l~av~d~~~~~~~--~~~~~~~~~--~~------~~ell~~~~vD~V~I~tp~   74 (346)
T PRK11579          6 RVGLIGYGYASKTFHAPLIAGTPGL-ELAAVSSSDATKVK--ADWPTVTVV--SE------PQHLFNDPNIDLIVIPTPN   74 (346)
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCC-EEEEEECCCHHHHH--hhCCCCcee--CC------HHHHhcCCCCCEEEEcCCc
Confidence            689999999996 4455444 4577 5555 444444332  344332222  22      3344444 79999999998


Q ss_pred             hHHHHHHHHHhccCCceEEEeccCCCCCcccccHH---HH---hh-cCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          280 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF---EV---LH-SGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~---~~---~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      ....+.+..++..  |+-|++-..     +..+..   .+   .. ++..+.-.  ........+..+-+++++|.+
T Consensus        75 ~~H~~~~~~al~a--GkhVl~EKP-----la~t~~ea~~l~~~a~~~g~~l~v~--~~~R~~p~~~~~k~~i~~g~i  142 (346)
T PRK11579         75 DTHFPLAKAALEA--GKHVVVDKP-----FTVTLSQARELDALAKSAGRVLSVF--HNRRWDSDFLTLKALLAEGVL  142 (346)
T ss_pred             HHHHHHHHHHHHC--CCeEEEeCC-----CCCCHHHHHHHHHHHHHhCCEEEEE--eeccCCHHHHHHHHHHhcCCC
Confidence            8878899999988  566666432     222221   11   12 34444322  223334567888888888755

>PRK08303 short chain dehydrogenase; Provisional

Probab=94.52  E-value=0.29  Score=45.54  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=29.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .+.++||.|+ +++|..+++.+...|+ +|+.++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            4678999987 9999999999999999 78888776

>PRK07340 ornithine cyclodeaminase; Validated

Probab=94.50  E-value=0.17  Score=47.04  Aligned_cols=102  Identities=12%  Similarity=0.058  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCCchHHHH-HHHcCCC--eEEeCCCCCchhHHHHhhCCCccEEEE
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEI-GKRFGVT--EFVNSKNCGDKSIIIDMTDGGADYCFE  275 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~-~~G~~~vi~~~~~~~~~~~-~~~lg~~--~vv~~~~~~~~~~i~~~~~g~~d~vid  275 (385)
                      ....+++|+|+|..|.+.++.+. ..+.++|.+.++++++.+. +.++...  .+. ..+  .    .+.. .++|+|+.
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~~~--~----~~av-~~aDiVit  194 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-PLD--G----EAIP-EAVDLVVT  194 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-ECC--H----HHHh-hcCCEEEE
Confidence            45678999999999999888886 5788899999999887654 4444321  111 111  1    1111 26999999


Q ss_pred             ccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccH
Q 016660          276 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS  313 (385)
Q Consensus       276 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~  313 (385)
                      |+++++.+-..+  ++++ -.+..+|...+ ..-+++.
T Consensus       195 aT~s~~Pl~~~~--~~~g-~hi~~iGs~~p-~~~El~~  228 (304)
T PRK07340        195 ATTSRTPVYPEA--ARAG-RLVVAVGAFTP-DMAELAP  228 (304)
T ss_pred             ccCCCCceeCcc--CCCC-CEEEecCCCCC-CcccCCH
Confidence            998775443333  6886 78888887542 3334443

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=94.49  E-value=0.45  Score=39.21  Aligned_cols=92  Identities=17%  Similarity=0.212  Sum_probs=62.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhH-------HHHhhCC-CccEE
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSI-------IIDMTDG-GADYC  273 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~-------i~~~~~g-~~d~v  273 (385)
                      .+|+|+|+ |.+|.+.++..|..++ -|.-++.++...     .....+++.++ ++-++       +.....+ ++|.|
T Consensus         4 grVivYGGkGALGSacv~~Fkanny-wV~siDl~eNe~-----Ad~sI~V~~~~-swtEQe~~v~~~vg~sL~gekvDav   76 (236)
T KOG4022|consen    4 GRVIVYGGKGALGSACVEFFKANNY-WVLSIDLSENEQ-----ADSSILVDGNK-SWTEQEQSVLEQVGSSLQGEKVDAV   76 (236)
T ss_pred             ceEEEEcCcchHhHHHHHHHHhcCe-EEEEEeeccccc-----ccceEEecCCc-chhHHHHHHHHHHHHhhcccccceE
Confidence            46999988 9999999999999999 888887654422     22334555444 33322       3344556 89999


Q ss_pred             EEccCCh--------------------------HHHHHHHHHhccCCceEEEecc
Q 016660          274 FECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       274 id~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      |...|+=                          ...+.+...|+++ |-+-+.|.
T Consensus        77 ~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~G-GLL~LtGA  130 (236)
T KOG4022|consen   77 FCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPG-GLLQLTGA  130 (236)
T ss_pred             EEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCC-ceeeeccc
Confidence            9877650                          1123455678897 88877764

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=94.49  E-value=0.15  Score=45.02  Aligned_cols=71  Identities=18%  Similarity=0.223  Sum_probs=49.0

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCe-EEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE-FVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       205 VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~-vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      |||+|+ |-+|..++..+...|. .|+++.+++........ ..... ..|..   ....+.+.... .+|.||++++.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~dl~---~~~~~~~~~~~~~~d~vi~~a~~   75 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH-EVIVLSRSSNSESFEEKKLNVEFVIGDLT---DKEQLEKLLEKANIDVVIHLAAF   75 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT-EEEEEESCSTGGHHHHHHTTEEEEESETT---SHHHHHHHHHHHTESEEEEEBSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC-ccccccccccccccccccceEEEEEeecc---ccccccccccccCceEEEEeecc
Confidence            789997 9999999999999999 77777776665554433 23221 12332   23335555555 79999999986

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=94.49  E-value=0.3  Score=47.33  Aligned_cols=74  Identities=18%  Similarity=0.283  Sum_probs=48.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCC-eE--EeCCCCCchhHHHHhhCCCccEEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EF--VNSKNCGDKSIIIDMTDGGADYCFE  275 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~-~v--v~~~~~~~~~~i~~~~~g~~d~vid  275 (385)
                      ++.+++|.|+ |++|...++.+...|+ +|+++++++++.+... ..+.. ..  .|..+   .+.+.+.. +++|++|.
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd---~~~v~~~l-~~IDiLIn  251 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEINGEDLPVKTLHWQVGQ---EAALAELL-EKVDILII  251 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC---HHHHHHHh-CCCCEEEE
Confidence            4678999997 9999999998888999 8888887766553321 11111 12  23322   22233333 36999999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      +.|.
T Consensus       252 nAGi  255 (406)
T PRK07424        252 NHGI  255 (406)
T ss_pred             CCCc
Confidence            8764

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=94.48  E-value=1.2  Score=40.55  Aligned_cols=102  Identities=15%  Similarity=0.192  Sum_probs=62.3

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHHHhhCCCcc
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIIIDMTDGGAD  271 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~~~~g~~d  271 (385)
                      ..++++++||=.|+|+ |..++.++..++ ...|++++.++++.+.++    .+|...+.-...  +...... ..+.||
T Consensus        67 l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~--D~~~~~~-~~~~fD  142 (264)
T TIGR00446        67 LEPDPPERVLDMAAAP-GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNF--DGRVFGA-AVPKFD  142 (264)
T ss_pred             hCCCCcCEEEEECCCc-hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecC--CHHHhhh-hccCCC
Confidence            4678899988888755 445555565543 238999999999987664    466654321111  1111111 123599


Q ss_pred             EEE-E--ccCC-------------------------hHHHHHHHHHhccCCceEEEeccC
Q 016660          272 YCF-E--CVGL-------------------------ASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       272 ~vi-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      .|+ |  |+|.                         ...+..++++++++ |++++...+
T Consensus       143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg-G~lvYstcs  201 (264)
T TIGR00446       143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG-GVLVYSTCS  201 (264)
T ss_pred             EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEeCC
Confidence            886 4  4443                         12467788899997 998866443

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=94.47  E-value=0.22  Score=48.16  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=50.6

Q ss_pred             cCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH-------HHHHc-CCCeE-EeCCCCCchhHHHHhhC
Q 016660          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-------IGKRF-GVTEF-VNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       198 ~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-------~~~~l-g~~~v-v~~~~~~~~~~i~~~~~  267 (385)
                      +-..+.+|||+|+ |.+|..+++.+...|+ +|+++.++.++.+       ..... ++..+ .|..+   ...+.....
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d---~~~l~~~~~  131 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTD---ADSLRKVLF  131 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCC---HHHHHHHHH
Confidence            4456788999987 9999999999988999 8888888765421       11112 23222 23333   222333333


Q ss_pred             C---CccEEEEccCC
Q 016660          268 G---GADYCFECVGL  279 (385)
Q Consensus       268 g---~~d~vid~~g~  279 (385)
                      +   ++|+||+|.+.
T Consensus       132 ~~~~~~D~Vi~~aa~  146 (390)
T PLN02657        132 SEGDPVDVVVSCLAS  146 (390)
T ss_pred             HhCCCCcEEEECCcc
Confidence            2   69999998864

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=94.47  E-value=0.38  Score=42.93  Aligned_cols=105  Identities=16%  Similarity=0.192  Sum_probs=64.7

Q ss_pred             hhhccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhh--
Q 016660          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMT--  266 (385)
Q Consensus       194 ~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~--  266 (385)
                      ....+..+..+||=+|.|. |..++.+++.++ ..+|++++.+++..+.+++    .|...-+.....+..+.+..+.  
T Consensus        61 ~~l~~~~~~~~vLEiGt~~-G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~  139 (234)
T PLN02781         61 SMLVKIMNAKNTLEIGVFT-GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN  139 (234)
T ss_pred             HHHHHHhCCCEEEEecCcc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC
Confidence            3445667788999998743 666666776553 3389999999988877654    4543212222212222233332  


Q ss_pred             --CCCccEEEEccC---ChHHHHHHHHHhccCCceEEEe
Q 016660          267 --DGGADYCFECVG---LASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       267 --~g~~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                        .+.||+||--..   -...++.+++++++| |.++.-
T Consensus       140 ~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G-G~ii~d  177 (234)
T PLN02781        140 DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG-GIIAFD  177 (234)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-eEEEEE
Confidence              237999974332   234577889999997 877653

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=94.46  E-value=0.18  Score=46.03  Aligned_cols=79  Identities=20%  Similarity=0.204  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC------eEEeCCCCCchhH----HHH
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT------EFVNSKNCGDKSI----IID  264 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~------~vv~~~~~~~~~~----i~~  264 (385)
                      -.+.++||.|+ .++|.+.+..+...|+ +|+.+++++++.+...+    .+..      .+.|..+......    ..+
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~   84 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE   84 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence            46788899987 9999999999999999 89999898887655432    2221      2334443222222    122


Q ss_pred             hhCCCccEEEEccCC
Q 016660          265 MTDGGADYCFECVGL  279 (385)
Q Consensus       265 ~~~g~~d~vid~~g~  279 (385)
                      ...|+.|++++..|.
T Consensus        85 ~~~GkidiLvnnag~   99 (270)
T KOG0725|consen   85 KFFGKIDILVNNAGA   99 (270)
T ss_pred             HhCCCCCEEEEcCCc
Confidence            224579999998775

>PRK07024 short chain dehydrogenase; Provisional

Probab=94.46  E-value=0.17  Score=45.69  Aligned_cols=77  Identities=18%  Similarity=0.177  Sum_probs=48.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCC--C-eE--EeCCCCCchhH-HHHhh--CCCcc
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV--T-EF--VNSKNCGDKSI-IIDMT--DGGAD  271 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~--~-~v--v~~~~~~~~~~-i~~~~--~g~~d  271 (385)
                      +.+|||+|+ |++|...++.+...|+ +|+.+++++++.+...+ +..  + ..  +|..+...... +....  .+.+|
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id   80 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD   80 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence            357999987 9999999998888899 89999888777654332 221  1 11  23333111111 22222  13589


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++|+++|.
T Consensus        81 ~lv~~ag~   88 (257)
T PRK07024         81 VVIANAGI   88 (257)
T ss_pred             EEEECCCc
Confidence            99998873

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=94.45  E-value=0.32  Score=43.68  Aligned_cols=78  Identities=18%  Similarity=0.127  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCC-eE--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      .+.+|||.|+ |++|...+..+...|+ +|+.++++.++.+.+    ++.+.+ ++  .|..+...... +....  -++
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   88 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK   88 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4788999987 9999999998888999 788887776655432    223332 12  23333111111 22221  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|.+.|.
T Consensus        89 ~d~li~~ag~   98 (255)
T PRK06113         89 VDILVNNAGG   98 (255)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=94.45  E-value=0.36  Score=43.93  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=66.7

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC--CeE-EeCCCCCchhHHHHhhCCC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEF-VNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--~~v-v~~~~~~~~~~i~~~~~g~  269 (385)
                      +....++.++.+||=+|+|. |..+..+++..++ +|++++.+++..+.+++...  ..+ +...+  ...  ..+.++.
T Consensus        44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D--~~~--~~~~~~~  117 (263)
T PTZ00098         44 ILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKIEFEAND--ILK--KDFPENT  117 (263)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCceEEEECC--ccc--CCCCCCC
Confidence            44566788999999998764 5556677777787 89999999888887776322  111 11111  100  0111236


Q ss_pred             ccEEEEc--c---C---ChHHHHHHHHHhccCCceEEEecc
Q 016660          270 ADYCFEC--V---G---LASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       270 ~d~vid~--~---g---~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ||+|+..  .   +   -...++.+.+.|+++ |+++....
T Consensus       118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG-G~lvi~d~  157 (263)
T PTZ00098        118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPN-GILLITDY  157 (263)
T ss_pred             eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            9999852  1   1   134577889999997 99987654

>PRK06701 short chain dehydrogenase; Provisional

Probab=94.45  E-value=0.34  Score=44.73  Aligned_cols=37  Identities=32%  Similarity=0.144  Sum_probs=30.3

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       199 ~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      ..++.++||.|+ |.+|...+..+...|+ +|+.+.+++
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~   80 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDE   80 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            345788999997 9999998888888899 788776654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.41  E-value=0.52  Score=40.94  Aligned_cols=35  Identities=37%  Similarity=0.441  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      ...+|+|+|+|++|...++.+...|..+++.+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45679999999999999999999999889999876

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07074 short chain dehydrogenase; Provisional

Probab=94.40  E-value=0.3  Score=43.92  Aligned_cols=77  Identities=18%  Similarity=0.277  Sum_probs=48.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCC--eE--EeCCCCCchhH-HHHhh--CCCccE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT--EF--VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~--~v--v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      +.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+ +.+...  ++  .|..+...... +....  -+++|+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   80 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV   80 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            468999997 9999998888888898 788888887765543 333211  12  23333111111 11111  136899


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|.+.|.
T Consensus        81 vi~~ag~   87 (257)
T PRK07074         81 LVANAGA   87 (257)
T ss_pred             EEECCCC
Confidence            9999974

>PLN03139 formate dehydrogenase; Provisional

Probab=94.39  E-value=0.2  Score=48.14  Aligned_cols=90  Identities=20%  Similarity=0.159  Sum_probs=57.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.|.+|.|+|.|.+|...++.++.+|. +|++.+++....+..+++|+..+   .+      +.++.. ..|+|+-+.+.
T Consensus       197 L~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~~~~---~~------l~ell~-~sDvV~l~lPl  265 (386)
T PLN03139        197 LEGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGAKFE---ED------LDAMLP-KCDVVVINTPL  265 (386)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCceec---CC------HHHHHh-hCCEEEEeCCC
Confidence            367899999999999999999999999 89999876544444445554321   11      122221 25777666653


Q ss_pred             hH-H---H-HHHHHHhccCCceEEEec
Q 016660          280 AS-L---V-QEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       280 ~~-~---~-~~~~~~l~~~~G~~v~~g  301 (385)
                      .. +   + .+.+..|+++ ..+|.++
T Consensus       266 t~~T~~li~~~~l~~mk~g-a~lIN~a  291 (386)
T PLN03139        266 TEKTRGMFNKERIAKMKKG-VLIVNNA  291 (386)
T ss_pred             CHHHHHHhCHHHHhhCCCC-eEEEECC
Confidence            21 1   1 2456667775 6666555

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.35  E-value=0.2  Score=45.03  Aligned_cols=78  Identities=21%  Similarity=0.134  Sum_probs=47.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHHHHHHcCCCe-EEeCCCCCchhH-HHHhh--CCCccEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGKRFGVTE-FVNSKNCGDKSI-IIDMT--DGGADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~~~~lg~~~-vv~~~~~~~~~~-i~~~~--~g~~d~vi  274 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+.+.+ +++..+.+++.+... ..|..+...... +....  -+++|++|
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li   84 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV   84 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999987 9999999999988999 6766543 334444444334322 123333211111 22221  13689999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      .+.|.
T Consensus        85 ~~ag~   89 (255)
T PRK06463         85 NNAGI   89 (255)
T ss_pred             ECCCc
Confidence            99875

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.35  E-value=0.38  Score=44.14  Aligned_cols=77  Identities=17%  Similarity=0.236  Sum_probs=55.3

Q ss_pred             CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          199 VEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       199 ~~~~~~VlI~G~g~-vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      --+|.+|+|+|.|+ +|...++++...|+ +|+++.+..+.  +.                     +.+ ..+|+||.++
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~~--L~---------------------~~~-~~aDIvI~At  210 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQN--LP---------------------ELV-KQADIIVGAV  210 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCchh--HH---------------------HHh-ccCCEEEEcc
Confidence            35788999999976 99999999999999 88888652111  11                     111 2589999999


Q ss_pred             CChHHHHHHHHHhccCCceEEEeccC
Q 016660          278 GLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       278 g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      |.+..+.  .+.++++ ..++.+|..
T Consensus       211 G~~~~v~--~~~lk~g-avViDvg~n  233 (283)
T PRK14192        211 GKPELIK--KDWIKQG-AVVVDAGFH  233 (283)
T ss_pred             CCCCcCC--HHHcCCC-CEEEEEEEe
Confidence            8776333  3568886 777778754

>PRK06179 short chain dehydrogenase; Provisional

Probab=94.35  E-value=0.085  Score=47.93  Aligned_cols=75  Identities=19%  Similarity=0.217  Sum_probs=48.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe-EEeCCCCCchhH-HHHhh--CCCccEEEEc
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSI-IIDMT--DGGADYCFEC  276 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vv~~~~~~~~~~-i~~~~--~g~~d~vid~  276 (385)
                      +.+++|.|+ |++|...++.+...|+ +|++++++.++.+..  .+... ..|..+...... +....  .+.+|++|++
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~   80 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPI--PGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNN   80 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccc--CCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence            567999987 9999999998888899 799998876554322  12221 234433222111 22221  2368999999


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      .|.
T Consensus        81 ag~   83 (270)
T PRK06179         81 AGV   83 (270)
T ss_pred             CCC
Confidence            985

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.35  E-value=0.3  Score=50.03  Aligned_cols=94  Identities=10%  Similarity=0.072  Sum_probs=65.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASL  282 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~  282 (385)
                      +.|+|.|.|.+|+..++.++..|. .+++++.++++.+.+++.|...++ -+. ...+.+++..-..+|.++-+.++.+.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~-GDa-t~~~~L~~agi~~A~~vv~~~~d~~~  477 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYY-GDA-TQLELLRAAGAEKAEAIVITCNEPED  477 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEE-eeC-CCHHHHHhcCCccCCEEEEEeCCHHH
Confidence            579999999999999999999999 899999999999999998865433 222 22322333222279999999998763


Q ss_pred             HHHHH---HHhccCCceEEEe
Q 016660          283 VQEAY---ACCRKGWGKTIVL  300 (385)
Q Consensus       283 ~~~~~---~~l~~~~G~~v~~  300 (385)
                      -....   +...+. .+++.-
T Consensus       478 n~~i~~~~r~~~p~-~~IiaR  497 (601)
T PRK03659        478 TMKIVELCQQHFPH-LHILAR  497 (601)
T ss_pred             HHHHHHHHHHHCCC-CeEEEE
Confidence            32333   333443 455543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=94.35  E-value=0.9  Score=38.83  Aligned_cols=97  Identities=16%  Similarity=0.253  Sum_probs=62.3

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCe--EEeCCCCCchhHHHHhhCC
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~--vv~~~~~~~~~~i~~~~~g  268 (385)
                      ....+.++.+||=+|+|. |..++.+++.....+|++++.+++..+.+++    ++...  ++.. +  .    .....+
T Consensus        25 ~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~-d--~----~~~~~~   96 (187)
T PRK08287         25 SKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG-E--A----PIELPG   96 (187)
T ss_pred             HhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec-C--c----hhhcCc
Confidence            445667888999888765 6677777776532389999999887776653    44322  2221 1  1    111123


Q ss_pred             CccEEEEccC---ChHHHHHHHHHhccCCceEEEe
Q 016660          269 GADYCFECVG---LASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       269 ~~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      .+|+|+....   -...++.+.+.|+++ |+++..
T Consensus        97 ~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~lv~~  130 (187)
T PRK08287         97 KADAIFIGGSGGNLTAIIDWSLAHLHPG-GRLVLT  130 (187)
T ss_pred             CCCEEEECCCccCHHHHHHHHHHhcCCC-eEEEEE
Confidence            6999985432   123467889999997 988764

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.33  E-value=0.47  Score=42.91  Aligned_cols=93  Identities=23%  Similarity=0.285  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc----CCC---eEEeCCCCCchhHHHHhhCCCccE
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT---EFVNSKNCGDKSIIIDMTDGGADY  272 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~---~vv~~~~~~~~~~i~~~~~g~~d~  272 (385)
                      .++.+||=+|+|. |..+..+++. |. +|++++.+++.++.+++.    |..   .++.. +   ...+.....+.||+
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~-d---~~~l~~~~~~~fD~  115 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC-A---AQDIAQHLETPVDL  115 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEc-C---HHHHhhhcCCCCCE
Confidence            4567888888765 7778888875 77 899999999988877653    321   12211 1   11122223347999


Q ss_pred             EEEcc-----CC-hHHHHHHHHHhccCCceEEEe
Q 016660          273 CFECV-----GL-ASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       273 vid~~-----g~-~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      |+...     .. ...++.+.+.|+++ |.++.+
T Consensus       116 V~~~~vl~~~~~~~~~l~~~~~~Lkpg-G~l~i~  148 (255)
T PRK11036        116 ILFHAVLEWVADPKSVLQTLWSVLRPG-GALSLM  148 (255)
T ss_pred             EEehhHHHhhCCHHHHHHHHHHHcCCC-eEEEEE
Confidence            98432     22 24478899999997 998755

>PRK06914 short chain dehydrogenase; Provisional

Probab=94.32  E-value=0.33  Score=44.28  Aligned_cols=77  Identities=14%  Similarity=0.116  Sum_probs=48.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCC--C-eE--EeCCCCCchhHHHHhhC--CC
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--T-EF--VNSKNCGDKSIIIDMTD--GG  269 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~--~-~v--v~~~~~~~~~~i~~~~~--g~  269 (385)
                      +.++||+|+ |.+|...+..+...|+ +|+++++++++.+...    ..+.  . ++  .|..+......+.+...  ++
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   81 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR   81 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence            567999997 9999999998888899 8888888776654432    2221  1 12  23333211111222211  36


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|+++.+.|.
T Consensus        82 id~vv~~ag~   91 (280)
T PRK06914         82 IDLLVNNAGY   91 (280)
T ss_pred             eeEEEECCcc
Confidence            8999999874

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.32  E-value=0.18  Score=46.02  Aligned_cols=70  Identities=21%  Similarity=0.127  Sum_probs=50.5

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEEeCCCCCchhHHHHhhCCCccEEEEc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSIIIDMTDGGADYCFEC  276 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~  276 (385)
                      +...+.+++|+|+|+.+.+++..++..|+++|+++.++++|.+.+. .++..    ..+        ......+|+||+|
T Consensus       118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~----~~~--------~~~~~~~dlvINa  185 (272)
T PRK12550        118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYE----WRP--------DLGGIEADILVNV  185 (272)
T ss_pred             CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCc----chh--------hcccccCCEEEEC
Confidence            4445668999999999999999999999988999999988877554 34311    100        0111258999999


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      ++.
T Consensus       186 Tp~  188 (272)
T PRK12550        186 TPI  188 (272)
T ss_pred             Ccc
Confidence            864

>PRK12747 short chain dehydrogenase; Provisional

Probab=94.31  E-value=0.89  Score=40.68  Aligned_cols=37  Identities=24%  Similarity=0.193  Sum_probs=29.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc-CCchH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEK  238 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~-~~~~~  238 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+.+. +.+++
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~   41 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEE   41 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHH
Confidence            4678999987 9999999999999999 677653 34343

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=94.29  E-value=0.13  Score=45.78  Aligned_cols=105  Identities=24%  Similarity=0.451  Sum_probs=62.2

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHH----cCCCeE--EeCCCCCchhHHHHhhC
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEF--VNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~~~v--v~~~~~~~~~~i~~~~~  267 (385)
                      +....+++++||=+|+|. |.++..+++..+. .+|+++|.+++-++.+++    .+...+  +..+. ..    ..+.+
T Consensus        41 ~~~~~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da-~~----lp~~d  114 (233)
T PF01209_consen   41 KLLGLRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA-ED----LPFPD  114 (233)
T ss_dssp             HHHT--S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT-TB------S-T
T ss_pred             hccCCCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH-HH----hcCCC
Confidence            445678899999997755 6788888887753 289999999998887764    333222  21111 11    11223


Q ss_pred             CCccEEEEccCC------hHHHHHHHHHhccCCceEEEeccCCCC
Q 016660          268 GGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGVDQPG  306 (385)
Q Consensus       268 g~~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~g~~~~~  306 (385)
                      +.||+|.-+.|-      ...+.++.+.|++| |+++.+....+.
T Consensus       115 ~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG-G~l~ile~~~p~  158 (233)
T PF01209_consen  115 NSFDAVTCSFGLRNFPDRERALREMYRVLKPG-GRLVILEFSKPR  158 (233)
T ss_dssp             T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEE-EEEEEEEEEB-S
T ss_pred             CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC-eEEEEeeccCCC
Confidence            369999876653      35588999999997 999887765433

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.28  E-value=0.3  Score=44.89  Aligned_cols=68  Identities=21%  Similarity=0.254  Sum_probs=49.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +|.|+|.|.+|...+..++..|. .|++.++++++.+.+.+.|......  .  ..    +. -...|+||-|+....
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~~~--~--~~----~~-~~~aDlVilavp~~~   69 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDEAS--T--DL----SL-LKDCDLVILALPIGL   69 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCccccc--C--CH----hH-hcCCCEEEEcCCHHH
Confidence            58899999999988888888898 8999999998888888877421110  0  11    11 125799999988665

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.26  E-value=0.37  Score=43.22  Aligned_cols=76  Identities=17%  Similarity=0.254  Sum_probs=45.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch-HH-HH---HHHcCCC-eE--EeCCCCCchhH-HHHhhC--CCc
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KF-EI---GKRFGVT-EF--VNSKNCGDKSI-IIDMTD--GGA  270 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~-~~-~~---~~~lg~~-~v--v~~~~~~~~~~-i~~~~~--g~~  270 (385)
                      .++||.|+ |.+|...+..+...|+ +|+.+++... .. +.   ++..+.. .+  .|..+...... +.....  +.+
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF-DLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI   81 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            57899987 9999999999888999 7888876532 22 12   2223332 22  23333111111 222221  368


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|.+.|.
T Consensus        82 d~vi~~ag~   90 (256)
T PRK12745         82 DCLVNNAGV   90 (256)
T ss_pred             CEEEECCcc
Confidence            999999874

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.26  E-value=0.59  Score=44.53  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .+.+|||+|+|++|-.+++.+-..|+++++.+|.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            457899999999999999999999999999997653

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.26  E-value=0.39  Score=47.80  Aligned_cols=71  Identities=27%  Similarity=0.258  Sum_probs=49.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch-----HHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEE
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-----KFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCF  274 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~-----~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vi  274 (385)
                      ..+.+|+|+|+|.+|+.++.+++..|+ +|++++..+.     ..+.+++.|+....+....         ....+|+|+
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---------~~~~~D~Vv   83 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRLGPGPT---------LPEDTDLVV   83 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---------ccCCCCEEE
Confidence            346789999999999999999999999 7988875542     2344666776544332220         012578888


Q ss_pred             EccCCh
Q 016660          275 ECVGLA  280 (385)
Q Consensus       275 d~~g~~  280 (385)
                      -+.|-+
T Consensus        84 ~s~Gi~   89 (480)
T PRK01438         84 TSPGWR   89 (480)
T ss_pred             ECCCcC
Confidence            887764

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.24  E-value=0.4  Score=44.23  Aligned_cols=93  Identities=18%  Similarity=0.264  Sum_probs=65.0

Q ss_pred             ccccchhhhhhhhhhhccC-CCCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEc-CCchHHHHHHHcCCCeEEeCCCCC
Q 016660          181 LLSCGVSTGVGAAWRTANV-EVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVD-VISEKFEIGKRFGVTEFVNSKNCG  257 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~~-~~~~~VlI~G-~g~vG~~ai~la~~~G~~~vi~~~-~~~~~~~~~~~lg~~~vv~~~~~~  257 (385)
                      .+||.....+. +.+..++ -.|.+|+|+| .+.+|.-.+.++...|+ .|++.. ++.+                    
T Consensus       137 ~~PcTp~ai~~-ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~~--------------------  194 (296)
T PRK14188        137 LVPCTPLGCMM-LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTRD--------------------  194 (296)
T ss_pred             CcCCCHHHHHH-HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCCC--------------------
Confidence            45655444443 3344343 5799999999 59999999999999999 888884 3321                    


Q ss_pred             chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          258 DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       258 ~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                          +.+.+. ..|+|+-++|.+..+...+  +++| ..++.+|..
T Consensus       195 ----l~e~~~-~ADIVIsavg~~~~v~~~~--lk~G-avVIDvGin  232 (296)
T PRK14188        195 ----LPAVCR-RADILVAAVGRPEMVKGDW--IKPG-ATVIDVGIN  232 (296)
T ss_pred             ----HHHHHh-cCCEEEEecCChhhcchhe--ecCC-CEEEEcCCc
Confidence                111111 3799999999998666655  8886 888888864

>PLN02735 carbamoyl-phosphate synthase

Probab=94.24  E-value=0.7  Score=50.73  Aligned_cols=98  Identities=12%  Similarity=0.134  Sum_probs=59.8

Q ss_pred             chhhhhhhhhhhccCCCCCEEEEEcCCHH-----------HHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE-e
Q 016660          185 GVSTGVGAAWRTANVEVGSTVVIFGLGSI-----------GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-N  252 (385)
Q Consensus       185 ~~~ta~~al~~~~~~~~~~~VlI~G~g~v-----------G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv-~  252 (385)
                      ....||.+......-..-.+|||+|+|++           |..++..++..|+ .|+.+++++........+ +++++ .
T Consensus         6 ~~~~~~~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~-~Vi~vd~np~t~~~~~~~-aD~~yi~   83 (1102)
T PLN02735          6 TVTRAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVVLINSNPATIMTDPET-ADRTYIA   83 (1102)
T ss_pred             cceecccccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCC-EEEEEeCCcccccCChhh-CcEEEeC
Confidence            34456665433322233468999998874           5568888899999 899998877542211222 44432 2


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHH
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAY  287 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~  287 (385)
                      +.   ....+.+.... ++|.|+-+.|+...++.+.
T Consensus        84 p~---~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~  116 (1102)
T PLN02735         84 PM---TPELVEQVIAKERPDALLPTMGGQTALNLAV  116 (1102)
T ss_pred             CC---CHHHHHHHHHHhCCCEEEECCCchhhHHHHH
Confidence            22   22334444444 8999999988877555443

>PRK07102 short chain dehydrogenase; Provisional

Probab=94.23  E-value=0.32  Score=43.29  Aligned_cols=38  Identities=26%  Similarity=0.294  Sum_probs=32.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  241 (385)
                      .+++|.|+ |++|...++.+...|+ +|+++++++++.+.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~   40 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLER   40 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHH
Confidence            47899987 9999999999988999 89999888876543

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=94.22  E-value=0.34  Score=43.69  Aligned_cols=75  Identities=23%  Similarity=0.203  Sum_probs=47.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeEE--eCCCCCchhH-HHHhh--CCCccEE
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFV--NSKNCGDKSI-IIDMT--DGGADYC  273 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vv--~~~~~~~~~~-i~~~~--~g~~d~v  273 (385)
                      ++||.|+ +++|...++.+...|+ +|+.+++++++.+.+.    +.+..+.+  |..+...... +....  .+++|++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l   80 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL   80 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            5899987 9999999999888999 8999988877654332    22322222  3333111111 22221  2369999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      |++.|.
T Consensus        81 i~naG~   86 (259)
T PRK08340         81 VWNAGN   86 (259)
T ss_pred             EECCCC
Confidence            998874

>PRK09135 pteridine reductase; Provisional

Probab=94.21  E-value=0.44  Score=42.37  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=29.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .+.++||.|+ |.+|..+++.+...|+ +|++++++.
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~~   40 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHRS   40 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCC
Confidence            4578999997 9999999988888899 888887653

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=94.20  E-value=0.16  Score=47.87  Aligned_cols=75  Identities=15%  Similarity=0.080  Sum_probs=47.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH-----HHHHHH----cCCC-eE--EeCCCCCchhHHHHhhC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-----FEIGKR----FGVT-EF--VNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~-----~~~~~~----lg~~-~v--v~~~~~~~~~~i~~~~~  267 (385)
                      ++.+|||.|+ |.+|...++.+...|+ +|+++++.+++     .+.+..    .+.. ..  .|..+   ...+.....
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~~~~~~~~~   80 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSD---ASSLRRWLD   80 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEecccccccccchhhhccccccccCceEEEEecCCC---HHHHHHHHH
Confidence            4678999987 9999999999999999 78888665432     221110    1111 11  23322   223444444


Q ss_pred             C-CccEEEEccCC
Q 016660          268 G-GADYCFECVGL  279 (385)
Q Consensus       268 g-~~d~vid~~g~  279 (385)
                      . ++|+||++++.
T Consensus        81 ~~~~d~Vih~A~~   93 (340)
T PLN02653         81 DIKPDEVYNLAAQ   93 (340)
T ss_pred             HcCCCEEEECCcc
Confidence            4 68999999874

>PRK06523 short chain dehydrogenase; Provisional

Probab=94.19  E-value=0.28  Score=44.15  Aligned_cols=72  Identities=19%  Similarity=0.232  Sum_probs=45.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eE--EeCCCCCchhH-HHHhh--CCCccEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EF--VNSKNCGDKSI-IIDMT--DGGADYC  273 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~v--v~~~~~~~~~~-i~~~~--~g~~d~v  273 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++.++.+..     .+.. ..  .|..+...... +....  -+++|++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   81 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDD-----LPEGVEFVAADLTTAEGCAAVARAVLERLGGVDIL   81 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhh-----cCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5788999987 9999999999888999 788888765431     1211 11  23333111111 11221  1368999


Q ss_pred             EEccC
Q 016660          274 FECVG  278 (385)
Q Consensus       274 id~~g  278 (385)
                      |+++|
T Consensus        82 i~~ag   86 (260)
T PRK06523         82 VHVLG   86 (260)
T ss_pred             EECCc
Confidence            99987

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=94.18  E-value=0.23  Score=47.02  Aligned_cols=73  Identities=16%  Similarity=0.089  Sum_probs=46.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH--HHHHHHc----------CCCeE-EeCCCCCchhHHHHhhCC
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRF----------GVTEF-VNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~--~~~~~~l----------g~~~v-v~~~~~~~~~~i~~~~~g  268 (385)
                      .+|||+|+ |.+|...++.+...|+ +|+++++..+.  .+.+..+          ++..+ .|..   ....+.+...+
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~---d~~~l~~~~~~   76 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLT---DSSNLRRIIDE   76 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccC---CHHHHHHHHHh
Confidence            37999987 9999999999999999 88888776532  1112111          11111 1222   22335555555


Q ss_pred             -CccEEEEccCC
Q 016660          269 -GADYCFECVGL  279 (385)
Q Consensus       269 -~~d~vid~~g~  279 (385)
                       ++|+||++++.
T Consensus        77 ~~~d~ViH~Aa~   88 (343)
T TIGR01472        77 IKPTEIYNLAAQ   88 (343)
T ss_pred             CCCCEEEECCcc
Confidence             78999999873

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=94.17  E-value=0.49  Score=45.11  Aligned_cols=96  Identities=22%  Similarity=0.232  Sum_probs=62.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHc--CCCEEEEEc--CCchH-HHHHHHcCCCeEEeCCCCCc-----------------h
Q 016660          203 STVVIFGL-GSIGLAVAEGARLC--GATRIIGVD--VISEK-FEIGKRFGVTEFVNSKNCGD-----------------K  259 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~--G~~~vi~~~--~~~~~-~~~~~~lg~~~vv~~~~~~~-----------------~  259 (385)
                      .+|.|+|+ |++|..++...+..  .+ +|+++.  ++.++ .+.+++++...++-.++...                 .
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f-~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRF-RVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCcccc-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence            46899996 99999999988755  56 676664  33333 33566788776654433100                 0


Q ss_pred             hHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEec
Q 016660          260 SIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       260 ~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +.+.++... .+|+|+.++++...+...+.+++.|  +-+.++
T Consensus        81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG--K~VaLA  121 (385)
T PRK05447         81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAG--KRIALA  121 (385)
T ss_pred             hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCC--CcEEEe
Confidence            113333333 6899999999887788899999884  444443

>PRK06398 aldose dehydrogenase; Validated

Probab=94.16  E-value=0.21  Score=45.10  Aligned_cols=73  Identities=21%  Similarity=0.242  Sum_probs=46.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eEEeCCCCCchhH-HHHhhC--CCccEEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSI-IIDMTD--GGADYCFE  275 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vv~~~~~~~~~~-i~~~~~--g~~d~vid  275 (385)
                      .+.++||.|+ |++|...+..+...|+ +|+.+++++++..     ... ...|..+...... +.....  +.+|++|+
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~-----~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~   78 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN-----DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVN   78 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC-----ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4678999997 9999999999999999 8888877655421     111 1123333211111 222221  36899999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      +.|.
T Consensus        79 ~Ag~   82 (258)
T PRK06398         79 NAGI   82 (258)
T ss_pred             CCCC
Confidence            8874

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=94.15  E-value=0.51  Score=40.28  Aligned_cols=91  Identities=18%  Similarity=0.220  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCe--EEeCCCCCchhHHHHhh-CCCccEE
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE--FVNSKNCGDKSIIIDMT-DGGADYC  273 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~--vv~~~~~~~~~~i~~~~-~g~~d~v  273 (385)
                      ++.+||=+|+|. |..++.+++.....+|++++.+++..+.++    +.+.+.  ++..+       +..+. .+.||+|
T Consensus        42 ~~~~vLDiGcGt-G~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d-------~~~~~~~~~fD~I  113 (181)
T TIGR00138        42 DGKKVIDIGSGA-GFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGR-------AEDFQHEEQFDVI  113 (181)
T ss_pred             CCCeEEEecCCC-CccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecc-------hhhccccCCccEE
Confidence            378899888754 566666666553338999999988666554    345433  22211       11222 2379998


Q ss_pred             EEcc-C-ChHHHHHHHHHhccCCceEEEe
Q 016660          274 FECV-G-LASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       274 id~~-g-~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      +-.. . -+..++.+.+.|+++ |+++..
T Consensus       114 ~s~~~~~~~~~~~~~~~~Lkpg-G~lvi~  141 (181)
T TIGR00138       114 TSRALASLNVLLELTLNLLKVG-GYFLAY  141 (181)
T ss_pred             EehhhhCHHHHHHHHHHhcCCC-CEEEEE
Confidence            7543 1 134456788899997 998866

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.13  E-value=0.62  Score=40.36  Aligned_cols=100  Identities=17%  Similarity=0.157  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch-------------------H----HHHHHHcCCCeEEeCCCCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-------------------K----FEIGKRFGVTEFVNSKNCG  257 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~-------------------~----~~~~~~lg~~~vv~~~~~~  257 (385)
                      .+.+|+|+|+|++|.-.++.+-..|.+++..+|...=                   |    .+.++++..+--+......
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~   99 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD   99 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence            4677999999999999999999999988998874410                   1    1123344443222221111


Q ss_pred             chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCc-eEEEecc
Q 016660          258 DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWG-KTIVLGV  302 (385)
Q Consensus       258 ~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G-~~v~~g~  302 (385)
                      ..+...++. .++|+|+++..........-+...+. + .++..+.
T Consensus       100 ~~~~~~~~~-~~~dvVi~~~~~~~~~~~ln~~c~~~-~ip~i~~~~  143 (197)
T cd01492         100 ISEKPEEFF-SQFDVVVATELSRAELVKINELCRKL-GVKFYATGV  143 (197)
T ss_pred             ccccHHHHH-hCCCEEEECCCCHHHHHHHHHHHHHc-CCCEEEEEe
Confidence            111111222 26899999988766444444444443 4 3444443

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.12  E-value=0.44  Score=44.67  Aligned_cols=94  Identities=18%  Similarity=0.288  Sum_probs=59.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC----CCEEEEEcC--CchHHHHHHHcCC--------------------Ce--EEeCCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLCG----ATRIIGVDV--ISEKFEIGKRFGV--------------------TE--FVNSKN  255 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G----~~~vi~~~~--~~~~~~~~~~lg~--------------------~~--vv~~~~  255 (385)
                      +|.|.|.|.+|..+++.+...+    + .|+++..  +.+.+..+.++.-                    +.  ++..++
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~-~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~   79 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGI-EVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT   79 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCe-EEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence            4789999999999999987653    5 5666532  2233344433221                    11  111111


Q ss_pred             CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          256 CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       256 ~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                          +.-..+...++|+||+|+|.....+.+...+..| ++.|.++..
T Consensus        80 ----p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aG-a~~V~~SaP  122 (325)
T TIGR01532        80 ----PEALPWRALGVDLVLDCTGVYGNREQGERHIRAG-AKRVLFSHP  122 (325)
T ss_pred             ----hhhccccccCCCEEEEccchhccHHHHHHHHHcC-CeEEEecCC
Confidence                0001122228999999999988888899999996 888888864

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.11  E-value=0.44  Score=43.90  Aligned_cols=94  Identities=19%  Similarity=0.247  Sum_probs=65.9

Q ss_pred             ccccchhhhhhhhhhhccC-CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCc
Q 016660          181 LLSCGVSTGVGAAWRTANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  258 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~~-~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~  258 (385)
                      .+||....... +.+..++ -.|.+|.|+|. +.+|.-.+.++...|+ .|++..+....                    
T Consensus       138 ~~PcTp~aii~-lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~~--------------------  195 (301)
T PRK14194        138 LTPCTPSGCLR-LLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRSTD--------------------  195 (301)
T ss_pred             CCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCCC--------------------
Confidence            45665444433 3344444 47899999998 6999999999999999 89888544321                    


Q ss_pred             hhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          259 KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       259 ~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                         +.+.+. ..|+||-++|.+..+...+  ++++ ..++.+|..
T Consensus       196 ---l~e~~~-~ADIVIsavg~~~~v~~~~--ik~G-aiVIDvgin  233 (301)
T PRK14194        196 ---AKALCR-QADIVVAAVGRPRLIDADW--LKPG-AVVIDVGIN  233 (301)
T ss_pred             ---HHHHHh-cCCEEEEecCChhcccHhh--ccCC-cEEEEeccc
Confidence               112111 3799999999988776655  8886 788888854

>PRK03612 spermidine synthase; Provisional

Probab=94.08  E-value=0.47  Score=47.72  Aligned_cols=98  Identities=14%  Similarity=0.061  Sum_probs=61.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC-----------CCeEEeCCCCCchhHHHHhhCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-----------VTEFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg-----------~~~vv~~~~~~~~~~i~~~~~g  268 (385)
                      ++.++||++|+|. |..+..++++-..++|++++.+++-.+.+++..           .+++ +....+....+ +..++
T Consensus       296 ~~~~rVL~IG~G~-G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv-~vi~~Da~~~l-~~~~~  372 (521)
T PRK03612        296 ARPRRVLVLGGGD-GLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRV-TVVNDDAFNWL-RKLAE  372 (521)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCce-EEEEChHHHHH-HhCCC
Confidence            4567899998764 666777777655469999999999999888721           0111 10110111112 22334


Q ss_pred             CccEEEEccCC-----------hHHHHHHHHHhccCCceEEEec
Q 016660          269 GADYCFECVGL-----------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       269 ~~d~vid~~g~-----------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .||+|+--...           .+.++.+.+.|+++ |.++.-.
T Consensus       373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg-G~lv~~~  415 (521)
T PRK03612        373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD-GLLVVQS  415 (521)
T ss_pred             CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCC-eEEEEec
Confidence            79999643322           13467889999997 9988654

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=94.07  E-value=0.41  Score=42.18  Aligned_cols=100  Identities=19%  Similarity=0.193  Sum_probs=59.9

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeEE---------eCCCCC-chhHHHHhh
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFV---------NSKNCG-DKSIIIDMT  266 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vv---------~~~~~~-~~~~i~~~~  266 (385)
                      ...++.+||+.|+|. |.-++.||. .|+ .|++++.++.-++.+ ++.+.....         ...+-. ....+..+.
T Consensus        34 ~~~~~~rvL~~gCG~-G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~  110 (218)
T PRK13255         34 ALPAGSRVLVPLCGK-SLDMLWLAE-QGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT  110 (218)
T ss_pred             CCCCCCeEEEeCCCC-hHhHHHHHh-CCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence            445678999999865 667777775 799 899999999877764 233321100         000000 000011111


Q ss_pred             --C-CCccEEEEccC--------ChHHHHHHHHHhccCCceEEEec
Q 016660          267 --D-GGADYCFECVG--------LASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       267 --~-g~~d~vid~~g--------~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                        . +.||.|+|...        ....++.+.++|+++ |++.++.
T Consensus       111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg-G~~~l~~  155 (218)
T PRK13255        111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG-CRGLLVT  155 (218)
T ss_pred             cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC-CeEEEEE
Confidence              1 25899999663        123478889999997 8755443

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.07  E-value=0.72  Score=44.16  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .+.+|+|+|+|++|..+++.+...|+.+++.+|.+
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45679999999999999999999999899999765

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.04  E-value=0.49  Score=41.95  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=27.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      +..+|||+|+ |.+|...++.+...|+ +|+++.+.
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~~   39 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGA-DVVVHYRS   39 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3468999997 9999999999999999 55554443

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=94.04  E-value=0.15  Score=44.49  Aligned_cols=103  Identities=17%  Similarity=0.250  Sum_probs=65.3

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhC--
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTD--  267 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~--  267 (385)
                      ..+.....+||-+|++. |+.++.+|+.+  +. +|+.++.++++.+.+++    .|...-+.....+..+.+.++.+  
T Consensus        40 l~~~~~~k~vLEIGt~~-GySal~la~~l~~~g-~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~  117 (205)
T PF01596_consen   40 LVRLTRPKRVLEIGTFT-GYSALWLAEALPEDG-KITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG  117 (205)
T ss_dssp             HHHHHT-SEEEEESTTT-SHHHHHHHHTSTTTS-EEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT
T ss_pred             HHHhcCCceEEEecccc-ccHHHHHHHhhcccc-eEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc
Confidence            34455677899999744 77888888876  34 99999999998887754    45432222222223333444432  


Q ss_pred             --CCccEEE-EccCCh--HHHHHHHHHhccCCceEEEec
Q 016660          268 --GGADYCF-ECVGLA--SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       268 --g~~d~vi-d~~g~~--~~~~~~~~~l~~~~G~~v~~g  301 (385)
                        +.||+|| |+--..  ..++.++++++++ |.++.=.
T Consensus       118 ~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~g-gvii~DN  155 (205)
T PF01596_consen  118 EEGQFDFVFIDADKRNYLEYFEKALPLLRPG-GVIIADN  155 (205)
T ss_dssp             TTTSEEEEEEESTGGGHHHHHHHHHHHEEEE-EEEEEET
T ss_pred             CCCceeEEEEcccccchhhHHHHHhhhccCC-eEEEEcc
Confidence              3699995 664432  3367888999996 7776543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=94.03  E-value=0.47  Score=42.79  Aligned_cols=78  Identities=22%  Similarity=0.093  Sum_probs=46.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc-hHHH----HHHHcCCCe-E--EeCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE----IGKRFGVTE-F--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~----~~~~lg~~~-v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+.+.++. +..+    .+++.+... +  .|..+...... +....  .+
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g   84 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFG   84 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5788999987 9999999999999999 666665533 3222    222334321 1  23333111111 22221  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|+++++.|.
T Consensus        85 ~id~lv~~ag~   95 (261)
T PRK08936         85 TLDVMINNAGI   95 (261)
T ss_pred             CCCEEEECCCC
Confidence            68999999885

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=94.02  E-value=0.67  Score=42.10  Aligned_cols=101  Identities=19%  Similarity=0.277  Sum_probs=64.9

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHHcC-------CCe--EEeCCCCCchhHHHHh
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFG-------VTE--FVNSKNCGDKSIIIDM  265 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg-------~~~--vv~~~~~~~~~~i~~~  265 (385)
                      ...+.++++||-+|+|. |..+..+++..|. .+|+++|.+++-++.+++..       .+.  ++..+.. .    ..+
T Consensus        68 ~~~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~-~----lp~  141 (261)
T PLN02233         68 WSGAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT-D----LPF  141 (261)
T ss_pred             HhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc-c----CCC
Confidence            34677899999998755 5567778877653 28999999999888775421       111  1111110 0    012


Q ss_pred             hCCCccEEEEccC------ChHHHHHHHHHhccCCceEEEeccC
Q 016660          266 TDGGADYCFECVG------LASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       266 ~~g~~d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      .++.||.|+-..+      -...++++.+.|+++ |+++.+-..
T Consensus       142 ~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG-G~l~i~d~~  184 (261)
T PLN02233        142 DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG-SRVSILDFN  184 (261)
T ss_pred             CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC-cEEEEEECC
Confidence            2236999875332      134578999999997 998877543

>PRK12746 short chain dehydrogenase; Provisional

Probab=93.97  E-value=0.4  Score=42.95  Aligned_cols=38  Identities=21%  Similarity=0.130  Sum_probs=29.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEE-EcCCchHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKF  239 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~-~~~~~~~~  239 (385)
                      ++.+++|.|+ |.+|...++.+...|+ +|++ ..++.++.
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~   44 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAA   44 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHH
Confidence            3578999997 9999999998888899 6655 45555544

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=93.97  E-value=0.23  Score=39.26  Aligned_cols=90  Identities=17%  Similarity=0.104  Sum_probs=53.2

Q ss_pred             EEEEEcC-CHHHHHHHHHHHH-cCCCEEEEEcCCc-hHHHHHHHcC----CCe-EEeCCCCCchhHHHHhhCCCccEEEE
Q 016660          204 TVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVIS-EKFEIGKRFG----VTE-FVNSKNCGDKSIIIDMTDGGADYCFE  275 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~-~G~~~vi~~~~~~-~~~~~~~~lg----~~~-vv~~~~~~~~~~i~~~~~g~~d~vid  275 (385)
                      +|.|+|+ |.+|...++++.. -.++.+.++.++. ....+...++    ... .+...+      ...+  ...|+||.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~Dvvf~   72 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDAD------PEEL--SDVDVVFL   72 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETS------GHHH--TTESEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecc------hhHh--hcCCEEEe
Confidence            5889996 9999999888874 4564444454444 2223333222    211 121111      1112  36999999


Q ss_pred             ccCChHHHHHHHHHhccCCceEEEecc
Q 016660          276 CVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       276 ~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      |.+.....+..-..+..+ -+++..+.
T Consensus        73 a~~~~~~~~~~~~~~~~g-~~ViD~s~   98 (121)
T PF01118_consen   73 ALPHGASKELAPKLLKAG-IKVIDLSG   98 (121)
T ss_dssp             -SCHHHHHHHHHHHHHTT-SEEEESSS
T ss_pred             cCchhHHHHHHHHHhhCC-cEEEeCCH
Confidence            999887566666666775 67777654

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=93.96  E-value=0.2  Score=45.29  Aligned_cols=73  Identities=16%  Similarity=0.086  Sum_probs=52.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      +|||.|+.+-|...+..+...|+ +|+++..++.+.+.+.+.|...+..-.-  ....+.++... ++|+|||++..
T Consensus         2 ~ILvlGGT~egr~la~~L~~~g~-~v~~s~~t~~~~~~~~~~g~~~v~~g~l--~~~~l~~~l~~~~i~~VIDAtHP   75 (256)
T TIGR00715         2 TVLLMGGTVDSRAIAKGLIAQGI-EILVTVTTSEGKHLYPIHQALTVHTGAL--DPQELREFLKRHSIDILVDATHP   75 (256)
T ss_pred             eEEEEechHHHHHHHHHHHhCCC-eEEEEEccCCccccccccCCceEEECCC--CHHHHHHHHHhcCCCEEEEcCCH
Confidence            68999884459888888778898 8888888888887777776655542221  22235566655 89999998864

This enzyme was found to be a monomer by gel filtration.

>PRK08223 hypothetical protein; Validated

Probab=93.94  E-value=0.79  Score=41.99  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .+.+|+|+|+|++|-.+++.+-.+|+.++..+|.+
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            46779999999999999999999999999888654

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.94  E-value=0.38  Score=43.51  Aligned_cols=78  Identities=21%  Similarity=0.199  Sum_probs=46.8

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeE--EeCCCCCchhH-HHHhhC--C
Q 016660          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF--VNSKNCGDKSI-IIDMTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v--v~~~~~~~~~~-i~~~~~--g  268 (385)
                      .+.++||.|+ +  ++|.+.++.+...|+ +|+.+.++++..+.+    ++.|...+  +|..+...... +.....  +
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG   85 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5678999987 4  799998888888899 788877664222222    23343322  34333222221 222222  3


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      .+|++++++|.
T Consensus        86 ~iDilVnnag~   96 (260)
T PRK06603         86 SFDFLLHGMAF   96 (260)
T ss_pred             CccEEEEcccc
Confidence            69999998863

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.92  E-value=0.4  Score=44.42  Aligned_cols=92  Identities=14%  Similarity=0.146  Sum_probs=57.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCC----chhHHHHhhCCCccEEEEccCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG----DKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~----~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      +|+|+|+|.+|.+.+..+...|. .|+.+++++++.+.+++.|...  +..+..    ........  ..+|+||-++..
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~--~~~d~vila~k~   76 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRL--EDGEITVPVLAADDPAEL--GPQDLVILAVKA   76 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcc--cCCceeecccCCCChhHc--CCCCEEEEeccc
Confidence            58999999999998888888898 7888888777777776656421  100000    00001111  368999999886


Q ss_pred             hHHHHHHHHHh----ccCCceEEEecc
Q 016660          280 ASLVQEAYACC----RKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~~~~~~~~~l----~~~~G~~v~~g~  302 (385)
                      .. ++.+++.+    .++ ..++.+.+
T Consensus        77 ~~-~~~~~~~l~~~l~~~-~~iv~~~n  101 (304)
T PRK06522         77 YQ-LPAALPSLAPLLGPD-TPVLFLQN  101 (304)
T ss_pred             cc-HHHHHHHHhhhcCCC-CEEEEecC
Confidence            65 44444444    343 45655543

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=93.90  E-value=0.32  Score=36.47  Aligned_cols=85  Identities=25%  Similarity=0.298  Sum_probs=52.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC---CCEEE-EEcCCchHHHHH-HHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          204 TVVIFGLGSIGLAVAEGARLCG---ATRII-GVDVISEKFEIG-KRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G---~~~vi-~~~~~~~~~~~~-~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      +|.|+|+|.+|.+.+.-+...|   . +|+ +.++++++.+.+ +++++.... . +  ..+ +.+    ..|+||-|+.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~~~~-~-~--~~~-~~~----~advvilav~   70 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQATA-D-D--NEE-AAQ----EADVVILAVK   70 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTEEES-E-E--HHH-HHH----HTSEEEE-S-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcccccc-C-C--hHH-hhc----cCCEEEEEEC
Confidence            4778899999999999888888   6 677 548888887765 556643222 0 1  111 222    3799999998


Q ss_pred             ChHHHHHHHHH---hccCCceEEEe
Q 016660          279 LASLVQEAYAC---CRKGWGKTIVL  300 (385)
Q Consensus       279 ~~~~~~~~~~~---l~~~~G~~v~~  300 (385)
                      ... +.+.++.   ..++ ..++.+
T Consensus        71 p~~-~~~v~~~i~~~~~~-~~vis~   93 (96)
T PF03807_consen   71 PQQ-LPEVLSEIPHLLKG-KLVISI   93 (96)
T ss_dssp             GGG-HHHHHHHHHHHHTT-SEEEEE
T ss_pred             HHH-HHHHHHHHhhccCC-CEEEEe
Confidence            776 4444443   3443 444443

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=93.89  E-value=0.23  Score=49.96  Aligned_cols=71  Identities=20%  Similarity=0.234  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      .+.++||+|+|++|.+++..+...|+ +|+++.++.++.+.+. +++.. ++...+      .........|+++++++-
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la~~l~~~-~~~~~~------~~~~~~~~~diiINtT~v  449 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELADAVGGQ-ALTLAD------LENFHPEEGMILANTTSV  449 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCc-eeeHhH------hhhhccccCeEEEecccC
Confidence            46789999999999999999999999 8999988877766543 44432 222221      111111246888887754

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=93.88  E-value=0.3  Score=44.79  Aligned_cols=76  Identities=20%  Similarity=0.218  Sum_probs=45.3

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc----CCCeE-----EeCCCCCchhHHHHhhCC-CccE
Q 016660          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVTEF-----VNSKNCGDKSIIIDMTDG-GADY  272 (385)
Q Consensus       205 VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l----g~~~v-----v~~~~~~~~~~i~~~~~g-~~d~  272 (385)
                      |||.|+ |.+|...++.+...+.++++.+++++.++..++ ++    ....+     ....+-.+...+...... ++|+
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi   80 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI   80 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence            799987 999999999998889889999999988776554 33    11111     112221223335566665 8999


Q ss_pred             EEEccCCh
Q 016660          273 CFECVGLA  280 (385)
Q Consensus       273 vid~~g~~  280 (385)
                      ||.++.-+
T Consensus        81 VfHaAA~K   88 (293)
T PF02719_consen   81 VFHAAALK   88 (293)
T ss_dssp             EEE-----
T ss_pred             EEEChhcC
Confidence            99987754

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK07577 short chain dehydrogenase; Provisional

Probab=93.88  E-value=0.21  Score=44.17  Aligned_cols=72  Identities=19%  Similarity=0.256  Sum_probs=46.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eEEeCCCCCchhH-HHHhhCC-CccEEEEcc
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSI-IIDMTDG-GADYCFECV  277 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vv~~~~~~~~~~-i~~~~~g-~~d~vid~~  277 (385)
                      +.++||.|+ |.+|...++.+...|+ +|+.+.++.++     .+... ...|..+...... +...... +.|++|.+.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~a   76 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAID-----DFPGELFACDLADIEQTAATLAQINEIHPVDAIVNNV   76 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCccc-----ccCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECC
Confidence            568999987 9999999999989998 88888877654     12221 1234333211111 3333233 689999988


Q ss_pred             CC
Q 016660          278 GL  279 (385)
Q Consensus       278 g~  279 (385)
                      |.
T Consensus        77 g~   78 (234)
T PRK07577         77 GI   78 (234)
T ss_pred             CC
Confidence            74

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=93.87  E-value=0.77  Score=43.47  Aligned_cols=95  Identities=20%  Similarity=0.219  Sum_probs=55.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHH-cCCCEEEEEc-CCchHHH-HHHHcCCCeEEeC--------CCCC--chhHHHHhhCCCc
Q 016660          204 TVVIFGLGSIGLAVAEGARL-CGATRIIGVD-VISEKFE-IGKRFGVTEFVNS--------KNCG--DKSIIIDMTDGGA  270 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~-~G~~~vi~~~-~~~~~~~-~~~~lg~~~vv~~--------~~~~--~~~~i~~~~~g~~  270 (385)
                      +|.|.|.|.+|...++.+.. -++ .++++. .+++..+ +++..|.+ +...        .+..  .......+. .++
T Consensus         3 kVaI~G~GrIGr~va~al~~~~d~-eLvav~d~~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~~~~el~-~~v   79 (341)
T PRK04207          3 KVGVNGYGTIGKRVADAVAAQPDM-ELVGVAKTKPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAGTIEDLL-EKA   79 (341)
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCc-EEEEEECCChHHHHHHHHhcCCC-ccccCccccccccCCceEEcCChhHhh-ccC
Confidence            58899999999998887764 467 555553 3333333 23434432 1100        0000  000012222 259


Q ss_pred             cEEEEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          271 DYCFECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       271 d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      |+||||++.....+.+..+++.| -+++..+.
T Consensus        80 DVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~  110 (341)
T PRK04207         80 DIVVDATPGGVGAKNKELYEKAG-VKAIFQGG  110 (341)
T ss_pred             CEEEECCCchhhHHHHHHHHHCC-CEEEEcCC
Confidence            99999999988777777777775 56665554

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=93.85  E-value=0.41  Score=44.72  Aligned_cols=75  Identities=16%  Similarity=0.162  Sum_probs=45.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc----CC--C-eEEeCCCCCchhHHHHhhCCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GV--T-EFVNSKNCGDKSIIIDMTDGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~--~-~vv~~~~~~~~~~i~~~~~g~~d~  272 (385)
                      .+.+|||.|+ |.+|...+..+...|+ +|+++.++.++.+....+    +.  . .++. .+......+.+... ++|+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~Dl~~~~~~~~~~~-~~d~   80 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTDRKKTEHLLALDGAKERLKLFK-ADLLEESSFEQAIE-GCDA   80 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcchHHHHHHHhccCCCCceEEEe-cCCCCcchHHHHHh-CCCE
Confidence            4678999997 9999999998888899 788776665543322211    11  1 1221 11111222333333 5899


Q ss_pred             EEEccC
Q 016660          273 CFECVG  278 (385)
Q Consensus       273 vid~~g  278 (385)
                      ||++++
T Consensus        81 vih~A~   86 (322)
T PLN02986         81 VFHTAS   86 (322)
T ss_pred             EEEeCC
Confidence            999886

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=93.83  E-value=0.53  Score=44.67  Aligned_cols=78  Identities=14%  Similarity=0.095  Sum_probs=49.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHc--CCC-eEEeCCCCCchhHHHHhhCCCccEE
Q 016660          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF--GVT-EFVNSKNCGDKSIIIDMTDGGADYC  273 (385)
Q Consensus       199 ~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l--g~~-~vv~~~~~~~~~~i~~~~~g~~d~v  273 (385)
                      -..+.+|||+|+ |.+|...++.+...|+ +|+++.++.++...+ ..+  +.. .++. .+......+.+... ++|+|
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~Dl~~~~~~~~~~~-~~d~V   83 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLRDPAKSLHLLSKWKEGDRLRLFR-ADLQEEGSFDEAVK-GCDGV   83 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhhccCCeEEEEE-CCCCCHHHHHHHHc-CCCEE
Confidence            456778999987 9999999999988999 788877766544332 222  111 1222 12122222333333 58999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      |++++.
T Consensus        84 ih~A~~   89 (353)
T PLN02896         84 FHVAAS   89 (353)
T ss_pred             EECCcc
Confidence            998864

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=93.82  E-value=0.67  Score=41.04  Aligned_cols=70  Identities=14%  Similarity=0.230  Sum_probs=49.3

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch--HHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       205 VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~--~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      |+|+|+ |.+|...++.+...+. +|.++.++.+  +...++..|+..+ . -+....+.+.+... |+|.||.+.+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv-~-~d~~~~~~l~~al~-g~d~v~~~~~   73 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVV-E-ADYDDPESLVAALK-GVDAVFSVTP   73 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEE-E-S-TT-HHHHHHHHT-TCSEEEEESS
T ss_pred             CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEe-e-cccCCHHHHHHHHc-CCceEEeecC
Confidence            789997 9999999999999888 7888877764  3455677888543 2 22223333444444 6999999888

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=93.80  E-value=1.1  Score=38.98  Aligned_cols=97  Identities=18%  Similarity=0.230  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeE-EeCCCCCchhHHHHhh-CCCccEEE
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF-VNSKNCGDKSIIIDMT-DGGADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~v-v~~~~~~~~~~i~~~~-~g~~d~vi  274 (385)
                      .+.+||-+|+|. |..+..+++.....+|++++.+++..+.+++    .+...+ +...+  ....+.... ++.+|.|+
T Consensus        40 ~~~~VLDiGcGt-G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d--~~~~l~~~~~~~~~D~V~  116 (202)
T PRK00121         40 DAPIHLEIGFGK-GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGD--AVEVLLDMFPDGSLDRIY  116 (202)
T ss_pred             CCCeEEEEccCC-CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecC--HHHHHHHHcCccccceEE
Confidence            567888889876 7777788876643489999999998887764    233322 11111  112222222 33789887


Q ss_pred             EccC--------------ChHHHHHHHHHhccCCceEEEec
Q 016660          275 ECVG--------------LASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       275 d~~g--------------~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      -...              ....++.+.+.|+++ |.+++..
T Consensus       117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~l~i~~  156 (202)
T PRK00121        117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG-GEIHFAT  156 (202)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHcCCC-CEEEEEc
Confidence            5332              234588999999997 9988764

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.77  E-value=0.5  Score=46.50  Aligned_cols=72  Identities=19%  Similarity=0.153  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchH----HHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK----FEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFEC  276 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~----~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~  276 (385)
                      .+.+++|+|.|.+|+.++.+++..|+ +|++.+.....    .+.+++.|.........    ..+   ...++|+|+..
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~----~~~---~~~~~d~vV~s   75 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEGIKVICGSHP----LEL---LDEDFDLMVKN   75 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcCCEEEeCCCC----HHH---hcCcCCEEEEC
Confidence            36789999998899999999999999 89998865421    23345566543322111    011   11248899887


Q ss_pred             cCCh
Q 016660          277 VGLA  280 (385)
Q Consensus       277 ~g~~  280 (385)
                      .|-+
T Consensus        76 ~gi~   79 (447)
T PRK02472         76 PGIP   79 (447)
T ss_pred             CCCC
Confidence            7643

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.77  E-value=0.5  Score=46.54  Aligned_cols=75  Identities=16%  Similarity=0.258  Sum_probs=53.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +|+|+|+|.+|...++.+...|. .|++++.++++.+.+++ ++...+. -+. .....+....-.++|.++-+++...
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~~~~~~~-gd~-~~~~~l~~~~~~~a~~vi~~~~~~~   77 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRLDVRTVV-GNG-SSPDVLREAGAEDADLLIAVTDSDE   77 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcCEEEEE-eCC-CCHHHHHHcCCCcCCEEEEecCChH
Confidence            58899999999999999999998 78899988888888765 6554332 222 2222233332237999999888765

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.76  E-value=0.43  Score=43.19  Aligned_cols=78  Identities=19%  Similarity=0.276  Sum_probs=46.6

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeE--EeCCCCCchhH-HHHhhC--C
Q 016660          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF--VNSKNCGDKSI-IIDMTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~v--v~~~~~~~~~~-i~~~~~--g  268 (385)
                      ++.++||.|+   +++|.+.++.+...|+ +|+.+.+.++..+.+++    +|....  .|..+...... +.....  +
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD   83 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence            5678999983   5899999998888999 78877655433333332    243222  23333111111 222222  3


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        84 ~iD~lVnnAG~   94 (261)
T PRK08690         84 GLDGLVHSIGF   94 (261)
T ss_pred             CCcEEEECCcc
Confidence            69999999864

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=93.76  E-value=0.55  Score=42.76  Aligned_cols=87  Identities=23%  Similarity=0.309  Sum_probs=52.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +|.|+|.|.+|...++.+... +. .+.++...+...+ ....++.. +.-+.+      +.++ ...+|+|++|++...
T Consensus         3 rVgIiG~G~iG~~~~~~l~~~~~~-~l~~v~~~~~~~~~~~~~~~~~-~~~~~d------~~~l-~~~~DvVve~t~~~~   73 (265)
T PRK13303          3 KVAMIGFGAIGAAVLELLEHDPDL-RVDWVIVPEHSIDAVRRALGEA-VRVVSS------VDAL-PQRPDLVVECAGHAA   73 (265)
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCc-eEEEEEEcCCCHHHHhhhhccC-CeeeCC------HHHh-ccCCCEEEECCCHHH
Confidence            588999999999988877654 55 3433322222222 22223211 111111      2233 346999999999988


Q ss_pred             HHHHHHHHhccCCceEEEe
Q 016660          282 LVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       282 ~~~~~~~~l~~~~G~~v~~  300 (385)
                      ..+.+..+|..+ -.++..
T Consensus        74 ~~e~~~~aL~aG-k~Vvi~   91 (265)
T PRK13303         74 LKEHVVPILKAG-IDCAVI   91 (265)
T ss_pred             HHHHHHHHHHcC-CCEEEe
Confidence            778888888885 555543

>TIGR02415 23BDH acetoin reductases

Probab=93.75  E-value=0.54  Score=42.09  Aligned_cols=75  Identities=19%  Similarity=0.162  Sum_probs=46.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe-E--EeCCCCCchhH-HHHhh--CCCccE
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      ++||.|+ |.+|...++.+...|+ +|+.+.+++++.+.+    +..+... +  .|..+...... +....  .+..|+
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   80 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV   80 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            6899987 9999999999989999 788888776554322    2234321 2  23322111111 22221  136899


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|++.|.
T Consensus        81 vi~~ag~   87 (254)
T TIGR02415        81 MVNNAGV   87 (254)
T ss_pred             EEECCCc
Confidence            9998874

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK10206 putative oxidoreductase; Provisional

Probab=93.68  E-value=0.46  Score=45.09  Aligned_cols=128  Identities=11%  Similarity=0.060  Sum_probs=75.0

Q ss_pred             EEEEEcCCHHHH-HHHH-HHHH-cCCCEEE-EEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccC
Q 016660          204 TVVIFGLGSIGL-AVAE-GARL-CGATRII-GVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG  278 (385)
Q Consensus       204 ~VlI~G~g~vG~-~ai~-la~~-~G~~~vi-~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g  278 (385)
                      +|.|+|.|.++. ..+. +++. -++ .++ +.++++++.+.+++++...++  .+      ..++... .+|+|+-++.
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~-~l~av~d~~~~~~~~~~~~~~~~~~--~~------~~ell~~~~iD~V~I~tp   73 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSW-HVAHIFRRHAKPEEQAPIYSHIHFT--SD------LDEVLNDPDVKLVVVCTH   73 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCE-EEEEEEcCChhHHHHHHhcCCCccc--CC------HHHHhcCCCCCEEEEeCC
Confidence            578999987653 3333 3233 356 454 455555555556666532222  22      3344444 7999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHH------Hh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------VL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      .....+.+.+++..  |+-|++-..     +..+...      .. .++..+.-..  ...+...+..+-+++++|.+
T Consensus        74 ~~~H~~~~~~al~a--GkhVl~EKP-----la~~~~ea~~l~~~a~~~~~~l~v~~--~~R~~p~~~~~k~li~~g~i  142 (344)
T PRK10206         74 ADSHFEYAKRALEA--GKNVLVEKP-----FTPTLAEAKELFALAKSKGLTVTPYQ--NRRFDSCFLTAKKAIESGKL  142 (344)
T ss_pred             chHHHHHHHHHHHc--CCcEEEecC-----CcCCHHHHHHHHHHHHHhCCEEEEEE--eeeECHHHHHHHHHHHcCCC
Confidence            98878899999988  566666432     2222221      12 2455554332  22223567778888888755

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=93.68  E-value=0.25  Score=45.37  Aligned_cols=44  Identities=23%  Similarity=0.216  Sum_probs=37.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  243 (385)
                      ..+.++||+|+|+.+.+++..+...|+++++++.++.+|.+.+.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            34678999999999999999888899989999999988866553

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=93.67  E-value=0.6  Score=42.11  Aligned_cols=77  Identities=18%  Similarity=0.111  Sum_probs=46.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc-CCchHHHHH-HH----cCCC-eE--EeCCCCCchhH-HHHhh--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEIG-KR----FGVT-EF--VNSKNCGDKSI-IIDMT--D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~-~~~~~~~~~-~~----lg~~-~v--v~~~~~~~~~~-i~~~~--~  267 (385)
                      ++.++||.|+ +++|...+..+...|+ +|+.+. +++++.+.. ++    .+.. ..  +|..+...... +.+..  -
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDF   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            5789999997 9999999998889999 777764 344443322 21    2432 22  23333211111 22221  1


Q ss_pred             CCccEEEEccC
Q 016660          268 GGADYCFECVG  278 (385)
Q Consensus       268 g~~d~vid~~g  278 (385)
                      +.+|++++++|
T Consensus        86 g~id~lv~nAg   96 (260)
T PRK08416         86 DRVDFFISNAI   96 (260)
T ss_pred             CCccEEEECcc
Confidence            36899999885

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.63  E-value=0.56  Score=42.89  Aligned_cols=94  Identities=16%  Similarity=0.261  Sum_probs=64.7

Q ss_pred             ccccchhhhhhhhhhhccC-CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCc
Q 016660          181 LLSCGVSTGVGAAWRTANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  258 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~~-~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~  258 (385)
                      .+||.....+. +.+..++ -.|.+|+|+|- ..+|.-..+++...|+ .|+++.+....                    
T Consensus       138 ~~PcTp~av~~-ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~a-tVtv~hs~T~~--------------------  195 (285)
T PRK10792        138 LRPCTPRGIMT-LLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGC-TVTVCHRFTKN--------------------  195 (285)
T ss_pred             CCCCCHHHHHH-HHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCC-eEEEEECCCCC--------------------
Confidence            35665444443 3344444 36999999997 5599999999999999 88888643211                    


Q ss_pred             hhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          259 KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       259 ~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                         +.+.+. .+|++|.++|.+..+..  +.++++ ..++.+|..
T Consensus       196 ---l~~~~~-~ADIvi~avG~p~~v~~--~~vk~g-avVIDvGin  233 (285)
T PRK10792        196 ---LRHHVR-NADLLVVAVGKPGFIPG--EWIKPG-AIVIDVGIN  233 (285)
T ss_pred             ---HHHHHh-hCCEEEEcCCCcccccH--HHcCCC-cEEEEcccc
Confidence               112211 48999999999885543  788886 788888854

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=93.61  E-value=0.61  Score=41.67  Aligned_cols=76  Identities=22%  Similarity=0.300  Sum_probs=48.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCe-E--EeCCCCCchhH-HHHhh--CCCcc
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE-F--VNSKNCGDKSI-IIDMT--DGGAD  271 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~-v--v~~~~~~~~~~-i~~~~--~g~~d  271 (385)
                      .++||.|+ |.+|...+..+...|+ +|+++++++++.+.+..    .+... +  .|..+...... +....  .++.|
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            47999997 9999999998888999 89999888776654432    23221 1  23333111111 11221  23689


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      +||.+.+.
T Consensus        81 ~vi~~a~~   88 (255)
T TIGR01963        81 ILVNNAGI   88 (255)
T ss_pred             EEEECCCC
Confidence            99988864

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK12827 short chain dehydrogenase; Provisional

Probab=93.59  E-value=0.63  Score=41.39  Aligned_cols=33  Identities=33%  Similarity=0.419  Sum_probs=27.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~  234 (385)
                      ++.++||.|+ |++|...+..+...|+ +|+.+++
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~~   38 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGA-DVIVLDI   38 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEcC
Confidence            3568999997 9999999988888999 6777543

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=93.59  E-value=0.071  Score=28.55  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=15.8

Q ss_pred             eeEEEeccCCCCcEEEEeecCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPP   39 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~   39 (385)
                      |||++++++++ ++++++|.|.+
T Consensus         1 MkAv~y~G~~~-v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKD-VRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTE-EEEEEE----S
T ss_pred             CcceEEeCCCc-eEEEECCCccc
Confidence            79999999998 99999998864

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=93.56  E-value=0.32  Score=43.15  Aligned_cols=101  Identities=22%  Similarity=0.408  Sum_probs=64.1

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHH----cCCCe--EEeCCCCCchhHHHHhhC
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~~~--vv~~~~~~~~~~i~~~~~  267 (385)
                      ....++++++||=+|+|. |..+..+++..+. .+|++++.+++..+.+++    .+.+.  ++..+...     ..+..
T Consensus        39 ~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~  112 (231)
T TIGR02752        39 KRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME-----LPFDD  112 (231)
T ss_pred             HhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhc-----CCCCC
Confidence            445677899999998865 6677788877642 289999999888776654    23222  22111100     01122


Q ss_pred             CCccEEEEccC------ChHHHHHHHHHhccCCceEEEecc
Q 016660          268 GGADYCFECVG------LASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       268 g~~d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +.+|+|+-...      ....++++.+.|+++ |.++.+-.
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~  152 (231)
T TIGR02752       113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG-GKVVCLET  152 (231)
T ss_pred             CCccEEEEecccccCCCHHHHHHHHHHHcCcC-eEEEEEEC
Confidence            37999975322      124467889999997 99987643

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.55  E-value=0.12  Score=38.31  Aligned_cols=84  Identities=25%  Similarity=0.419  Sum_probs=53.5

Q ss_pred             EcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe---EEeCCCCCchhHHHHhhCCCccEEEEccCC-----
Q 016660          208 FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE---FVNSKNCGDKSIIIDMTDGGADYCFECVGL-----  279 (385)
Q Consensus       208 ~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~---vv~~~~~~~~~~i~~~~~g~~d~vid~~g~-----  279 (385)
                      +|+| .|..+..+++.-+. +|++++.+++..+.+++.....   +...+.   ..  ..+.++.||+|+....-     
T Consensus         3 iG~G-~G~~~~~l~~~~~~-~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~---~~--l~~~~~sfD~v~~~~~~~~~~~   75 (95)
T PF08241_consen    3 IGCG-TGRFAAALAKRGGA-SVTGIDISEEMLEQARKRLKNEGVSFRQGDA---ED--LPFPDNSFDVVFSNSVLHHLED   75 (95)
T ss_dssp             ET-T-TSHHHHHHHHTTTC-EEEEEES-HHHHHHHHHHTTTSTEEEEESBT---TS--SSS-TT-EEEEEEESHGGGSSH
T ss_pred             ecCc-CCHHHHHHHhccCC-EEEEEeCCHHHHHHHHhcccccCchheeehH---Hh--CccccccccccccccceeeccC
Confidence            4655 48888888888444 9999999999888888755432   222111   10  12223479999864432     


Q ss_pred             -hHHHHHHHHHhccCCceEEE
Q 016660          280 -ASLVQEAYACCRKGWGKTIV  299 (385)
Q Consensus       280 -~~~~~~~~~~l~~~~G~~v~  299 (385)
                       ...++++.+.|+++ |+++.
T Consensus        76 ~~~~l~e~~rvLk~g-G~l~~   95 (95)
T PF08241_consen   76 PEAALREIYRVLKPG-GRLVI   95 (95)
T ss_dssp             HHHHHHHHHHHEEEE-EEEEE
T ss_pred             HHHHHHHHHHHcCcC-eEEeC
Confidence             24478999999997 98864

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK09134 short chain dehydrogenase; Provisional

Probab=93.55  E-value=0.6  Score=41.99  Aligned_cols=78  Identities=13%  Similarity=0.088  Sum_probs=45.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHHH-HH---HcCCC-eE--EeCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI-GK---RFGVT-EF--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~-~~---~lg~~-~v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      .+.++||.|+ |.+|...++.+...|+ +|+.+.+ +.++.+. ..   ..+.. +.  .|..+...... +.+..  .+
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   86 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGF-DVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG   86 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4568999997 9999999988888999 6666544 3333332 22   22432 12  23333111111 11111  23


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|.+.|.
T Consensus        87 ~iD~vi~~ag~   97 (258)
T PRK09134         87 PITLLVNNASL   97 (258)
T ss_pred             CCCEEEECCcC
Confidence            68999999874

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=93.54  E-value=0.34  Score=44.78  Aligned_cols=72  Identities=21%  Similarity=0.177  Sum_probs=50.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLV  283 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~  283 (385)
                      +|.|+|.|.+|...+..+...|. .|++.++++++.+.+.+.|+...   .+      ..+.. ...|+||.|+.....+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~~------~~~~~-~~aDivi~~vp~~~~~   69 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGAVTA---ET------ARQVT-EQADVIFTMVPDSPQV   69 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCccc---CC------HHHHH-hcCCEEEEecCCHHHH
Confidence            37788999999988888888898 89999999999888887775321   11      11111 1478888888876444


Q ss_pred             HHH
Q 016660          284 QEA  286 (385)
Q Consensus       284 ~~~  286 (385)
                      ...
T Consensus        70 ~~v   72 (291)
T TIGR01505        70 EEV   72 (291)
T ss_pred             HHH
Confidence            433

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=93.54  E-value=0.95  Score=37.28  Aligned_cols=98  Identities=21%  Similarity=0.284  Sum_probs=55.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHH-cCCCEEEEE-c-CCchHHHHHHH----cCC-CeEEeCCCCC-------------chhHH
Q 016660          204 TVVIFGLGSIGLAVAEGARL-CGATRIIGV-D-VISEKFEIGKR----FGV-TEFVNSKNCG-------------DKSII  262 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~-~G~~~vi~~-~-~~~~~~~~~~~----lg~-~~vv~~~~~~-------------~~~~i  262 (385)
                      +|.|+|.|.+|...++.+.. .++ .++++ + .+.+.+..+.+    .|. ..-+...+..             ..+.-
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~-~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~~   80 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDI-EVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPAN   80 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCC-EEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChHH
Confidence            57899999999998888774 466 44444 3 23444444433    221 0001111100             00101


Q ss_pred             HHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          263 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       263 ~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ..+..-++|+|+||+|.-.+.+.+...+..| .+-|+++..
T Consensus        81 ~~w~~~gvDiVie~tG~f~~~~~~~~hl~~G-akkViisap  120 (149)
T smart00846       81 LPWKELGVDIVVECTGKFTTREKASAHLKAG-AKKVIISAP  120 (149)
T ss_pred             CcccccCCeEEEeccccccchHHHHHHHHcC-CCEEEeCCC
Confidence            1122227999999988755566777888886 777777764

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=93.51  E-value=0.91  Score=44.55  Aligned_cols=103  Identities=18%  Similarity=0.241  Sum_probs=62.1

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHH----HcCCCeE--EeCCCCCchhHHHHhhCC
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGK----RFGVTEF--VNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~----~lg~~~v--v~~~~~~~~~~i~~~~~g  268 (385)
                      ..+++++++||=.|+|+ |..+..+++.++ ..+|++++.++++++.++    .+|.+.+  +..+...... ......+
T Consensus       247 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~-~~~~~~~  324 (434)
T PRK14901        247 LLDPQPGEVILDACAAP-GGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE-LKPQWRG  324 (434)
T ss_pred             HhCCCCcCEEEEeCCCC-chhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc-ccccccc
Confidence            35678899988887654 444555565543 238999999999887664    4776542  2221110100 0001134


Q ss_pred             CccEEE-E--ccCC-------------------------hHHHHHHHHHhccCCceEEEec
Q 016660          269 GADYCF-E--CVGL-------------------------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       269 ~~d~vi-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .||.|+ |  |+|.                         ...+..+++.+++| |++|+.-
T Consensus       325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg-G~lvyst  384 (434)
T PRK14901        325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG-GTLVYAT  384 (434)
T ss_pred             cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            699886 4  4442                         13367889999997 9988653

>PRK12744 short chain dehydrogenase; Provisional

Probab=93.47  E-value=0.58  Score=42.07  Aligned_cols=32  Identities=25%  Similarity=0.379  Sum_probs=26.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~  233 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++.
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~-~vv~i~   39 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGA-KAVAIH   39 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-cEEEEe
Confidence            4578999987 9999999999988999 555553

>PRK05855 short chain dehydrogenase; Validated

Probab=93.47  E-value=0.47  Score=48.14  Aligned_cols=78  Identities=21%  Similarity=0.222  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC-eE--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+.++++.++.+.+.    +.|.. .+  .|..+...... +.+..  .+.
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  392 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGV  392 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            4678999987 9999999988888999 7999988877655432    23432 12  23333111111 22221  236


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus       393 id~lv~~Ag~  402 (582)
T PRK05855        393 PDIVVNNAGI  402 (582)
T ss_pred             CcEEEECCcc
Confidence            8999999875

>PLN02928 oxidoreductase family protein

Probab=93.45  E-value=0.52  Score=44.72  Aligned_cols=97  Identities=25%  Similarity=0.383  Sum_probs=58.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC-----CCeEEeCCCCCchhHHHHhhCCCccEEE
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-----VTEFVNSKNCGDKSIIIDMTDGGADYCF  274 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg-----~~~vv~~~~~~~~~~i~~~~~g~~d~vi  274 (385)
                      -.|.+|.|+|.|.+|..+++.++.+|+ +|++.+++..+... ..++     ...+++... ... .+.++.. ..|+|+
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~-~L~ell~-~aDiVv  231 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPE-DGLLIPNGDVDDLVDEKG-GHE-DIYEFAG-EADIVV  231 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhh-hhhccccccccccccccC-ccc-CHHHHHh-hCCEEE
Confidence            357899999999999999999999999 89999876332211 1111     001111000 000 1222222 378888


Q ss_pred             EccCChH-H---H-HHHHHHhccCCceEEEecc
Q 016660          275 ECVGLAS-L---V-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       275 d~~g~~~-~---~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      -+.+... +   + .+.+..|+++ ..+|.++-
T Consensus       232 l~lPlt~~T~~li~~~~l~~Mk~g-a~lINvaR  263 (347)
T PLN02928        232 LCCTLTKETAGIVNDEFLSSMKKG-ALLVNIAR  263 (347)
T ss_pred             ECCCCChHhhcccCHHHHhcCCCC-eEEEECCC
Confidence            8776332 1   1 3677788886 77777763

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.42  E-value=0.98  Score=42.48  Aligned_cols=89  Identities=17%  Similarity=0.083  Sum_probs=62.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe-----------EEeCCCCCchhHHHHhhCCCccE
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-----------FVNSKNCGDKSIIIDMTDGGADY  272 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-----------vv~~~~~~~~~~i~~~~~g~~d~  272 (385)
                      +|.|+|+|.+|...+..+...|. .|.+.++++++.+.+.+.+...           +....+      ..+.. ...|+
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~------~~e~~-~~aD~   77 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTAD------PEEAL-AGADF   77 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCC------HHHHH-cCCCE
Confidence            68999999999999998888898 8999998888777666542110           111111      11211 25899


Q ss_pred             EEEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          273 CFECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       273 vid~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ||-++.... +++.++.++++ -.++.+..
T Consensus        78 Vi~~v~~~~-~~~v~~~l~~~-~~vi~~~~  105 (328)
T PRK14618         78 AVVAVPSKA-LRETLAGLPRA-LGYVSCAK  105 (328)
T ss_pred             EEEECchHH-HHHHHHhcCcC-CEEEEEee
Confidence            999999987 67888888885 66665544

>TIGR00452 methyltransferase, putative

Probab=93.39  E-value=1.2  Score=41.68  Aligned_cols=98  Identities=14%  Similarity=0.105  Sum_probs=60.7

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH---HHHHc-CCC---eEEeCCCCCchhHHHHh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE---IGKRF-GVT---EFVNSKNCGDKSIIIDM  265 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~---~~~~l-g~~---~vv~~~~~~~~~~i~~~  265 (385)
                      +.......++++||=+|+|. |..+..+++. |+..|++++.++.-..   .++++ +..   ++.. .+      +..+
T Consensus       113 ~l~~l~~~~g~~VLDvGCG~-G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~-~~------ie~l  183 (314)
T TIGR00452       113 VLPHLSPLKGRTILDVGCGS-GYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP-LG------IEQL  183 (314)
T ss_pred             HHHhcCCCCCCEEEEeccCC-cHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE-CC------HHHC
Confidence            44445667789999999876 6666666654 6668999998875433   22222 211   1211 11      2222


Q ss_pred             hC-CCccEEEEcc-----CCh-HHHHHHHHHhccCCceEEEe
Q 016660          266 TD-GGADYCFECV-----GLA-SLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       266 ~~-g~~d~vid~~-----g~~-~~~~~~~~~l~~~~G~~v~~  300 (385)
                      .. ..||+|+-..     ..+ ..+.++.+.|++| |++++-
T Consensus       184 p~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpG-G~Lvle  224 (314)
T TIGR00452       184 HELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIK-GELVLE  224 (314)
T ss_pred             CCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCC-CEEEEE
Confidence            22 2699998643     122 4588999999997 998864

Known examples to date are restricted to the proteobacteria.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.39  E-value=0.92  Score=38.67  Aligned_cols=39  Identities=23%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  243 (385)
                      +|.|+|+|.+|...++++-..|+ .|+..+.+++.++.++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~   39 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERAR   39 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhh
Confidence            58899999999998888888899 9999999988766543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=93.38  E-value=0.43  Score=44.18  Aligned_cols=72  Identities=17%  Similarity=0.157  Sum_probs=50.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLV  283 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~  283 (385)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+...   .+  .    .+.. ...|+||.|+......
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~~~~---~~--~----~e~~-~~~d~vi~~vp~~~~~   72 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGAETA---ST--A----KAVA-EQCDVIITMLPNSPHV   72 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec---CC--H----HHHH-hcCCEEEEeCCCHHHH
Confidence            58899999999988887778898 89999999888887777765311   11  1    1111 1468888888765544


Q ss_pred             HHH
Q 016660          284 QEA  286 (385)
Q Consensus       284 ~~~  286 (385)
                      +..
T Consensus        73 ~~v   75 (296)
T PRK11559         73 KEV   75 (296)
T ss_pred             HHH
Confidence            433

>PRK13243 glyoxylate reductase; Reviewed

Probab=93.37  E-value=0.36  Score=45.56  Aligned_cols=87  Identities=23%  Similarity=0.266  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++.+.. ....++..    +.+  .    .++.. ..|+|+-+.+..
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~~~~----~~~--l----~ell~-~aDiV~l~lP~t  215 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKPE-AEKELGAE----YRP--L----EELLR-ESDFVSLHVPLT  215 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCChh-hHHHcCCE----ecC--H----HHHHh-hCCEEEEeCCCC
Confidence            67899999999999999999999999 899998765443 23334432    111  1    11111 357777666543


Q ss_pred             HH----H-HHHHHHhccCCceEEEec
Q 016660          281 SL----V-QEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       281 ~~----~-~~~~~~l~~~~G~~v~~g  301 (385)
                      ..    + .+.+..++++ ..++.++
T Consensus       216 ~~T~~~i~~~~~~~mk~g-a~lIN~a  240 (333)
T PRK13243        216 KETYHMINEERLKLMKPT-AILVNTA  240 (333)
T ss_pred             hHHhhccCHHHHhcCCCC-eEEEECc
Confidence            21    1 3456666775 6666655

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=93.37  E-value=0.87  Score=33.49  Aligned_cols=35  Identities=29%  Similarity=0.428  Sum_probs=29.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~  234 (385)
                      -.+.+++|+|+|.+|..+++.+...+.++|.+.++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            45788999999999999999999886557877765

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=93.37  E-value=0.51  Score=42.65  Aligned_cols=101  Identities=18%  Similarity=0.221  Sum_probs=58.1

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCCc------hHHHHHHHcCCC-eE--EeCCCCCchhH-HHHhhC
Q 016660          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS------EKFEIGKRFGVT-EF--VNSKNCGDKSI-IIDMTD  267 (385)
Q Consensus       201 ~~~~VlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~------~~~~~~~~lg~~-~v--v~~~~~~~~~~-i~~~~~  267 (385)
                      .+.++||.|+   +++|...++.+...|+ +|+.+.++.      +..+.+.+.+.. ..  +|..+...... +.....
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   83 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ   83 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence            4678999986   4899999988888999 777664332      222222222211 12  23333111111 222222


Q ss_pred             --CCccEEEEccCCh-------H----------------------HHHHHHHHhccCCceEEEeccC
Q 016660          268 --GGADYCFECVGLA-------S----------------------LVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       268 --g~~d~vid~~g~~-------~----------------------~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                        +.+|++|+++|..       .                      ..+.++..++++ |+++.++..
T Consensus        84 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~-g~Iv~isS~  149 (258)
T PRK07370         84 KWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG-GSIVTLTYL  149 (258)
T ss_pred             HcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC-CeEEEEecc
Confidence              3699999998731       0                      123456677776 898887654

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=93.36  E-value=0.68  Score=41.60  Aligned_cols=101  Identities=16%  Similarity=0.254  Sum_probs=64.5

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHHHhh---
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIIIDMT---  266 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~~~---  266 (385)
                      ..+.....+||=+|. .+|+.++.+|+.+  +. +|+.++.++++.+.++    +.|..+-+.....+..+.+.++.   
T Consensus        74 l~~~~~ak~iLEiGT-~~GySal~la~al~~~g-~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~  151 (247)
T PLN02589         74 LLKLINAKNTMEIGV-YTGYSLLATALALPEDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDG  151 (247)
T ss_pred             HHHHhCCCEEEEEeC-hhhHHHHHHHhhCCCCC-EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhcc
Confidence            345556678999887 3477777888876  34 8999999998877665    45643322333322333344443   


Q ss_pred             --CCCccEEE-EccCC--hHHHHHHHHHhccCCceEEE
Q 016660          267 --DGGADYCF-ECVGL--ASLVQEAYACCRKGWGKTIV  299 (385)
Q Consensus       267 --~g~~d~vi-d~~g~--~~~~~~~~~~l~~~~G~~v~  299 (385)
                        .+.||+|| |+--.  ...++.+++++++| |.++.
T Consensus       152 ~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~G-Gviv~  188 (247)
T PLN02589        152 KYHGTFDFIFVDADKDNYINYHKRLIDLVKVG-GVIGY  188 (247)
T ss_pred             ccCCcccEEEecCCHHHhHHHHHHHHHhcCCC-eEEEE
Confidence              24799995 54422  24467889999996 77664

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.34  E-value=0.87  Score=44.85  Aligned_cols=80  Identities=18%  Similarity=0.074  Sum_probs=56.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC-CeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      .....++|+|.|.+|...++.+...|. .|++++.++++.+.+++.+. ..++.-+. .....+.+..-..+|.|+-+.+
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~~~~~~i~gd~-~~~~~L~~~~~~~a~~vi~~~~  306 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEELPNTLVLHGDG-TDQELLEEEGIDEADAFIALTN  306 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHCCCCeEEECCC-CCHHHHHhcCCccCCEEEECCC
Confidence            346789999999999999999999999 89999999998887776432 22333322 2222233332237899998877


Q ss_pred             ChH
Q 016660          279 LAS  281 (385)
Q Consensus       279 ~~~  281 (385)
                      ...
T Consensus       307 ~~~  309 (453)
T PRK09496        307 DDE  309 (453)
T ss_pred             CcH
Confidence            654

>PRK06141 ornithine cyclodeaminase; Validated

Probab=93.34  E-value=0.57  Score=43.84  Aligned_cols=93  Identities=12%  Similarity=0.018  Sum_probs=59.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCCchHHHHH-HHc---CCCeEEeCCCCCchhHHHHhhCCCccEEE
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIG-KRF---GVTEFVNSKNCGDKSIIIDMTDGGADYCF  274 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~-~~G~~~vi~~~~~~~~~~~~-~~l---g~~~vv~~~~~~~~~~i~~~~~g~~d~vi  274 (385)
                      ....+|+|+|+|.+|.+.++.+. ..+.++|.+..+++++.+.+ +++   |.. +....+      ..+.. .+.|+|+
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~-~~~~~~------~~~av-~~aDIVi  194 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD-AEVVTD------LEAAV-RQADIIS  194 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc-eEEeCC------HHHHH-hcCCEEE
Confidence            45688999999999999886544 46777999999998876643 333   322 211111      12111 2589999


Q ss_pred             EccCChHHHHHHHHHhccCCceEEEecc
Q 016660          275 ECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       275 d~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .+++++..+- -.+.++++ -.+..+|.
T Consensus       195 ~aT~s~~pvl-~~~~l~~g-~~i~~ig~  220 (314)
T PRK06141        195 CATLSTEPLV-RGEWLKPG-THLDLVGN  220 (314)
T ss_pred             EeeCCCCCEe-cHHHcCCC-CEEEeeCC
Confidence            9888764211 12567885 55556664

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.32  E-value=0.59  Score=42.15  Aligned_cols=78  Identities=22%  Similarity=0.252  Sum_probs=47.1

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCCc--hHHH-HHHHcCCC-eE--EeCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS--EKFE-IGKRFGVT-EF--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~--~~~~-~~~~lg~~-~v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      .+.++||.|+   +++|...++.+...|+ +|+.++++.  +..+ ..++++.. ..  .|..+...... +....  -+
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g   84 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVD   84 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            4678999985   7999999988888999 888887553  3222 33344432 12  23333211111 22222  24


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      .+|++|+++|.
T Consensus        85 ~iD~li~nAG~   95 (256)
T PRK07889         85 GLDGVVHSIGF   95 (256)
T ss_pred             CCcEEEEcccc
Confidence            79999998874

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.31  E-value=0.62  Score=42.50  Aligned_cols=79  Identities=18%  Similarity=0.304  Sum_probs=47.5

Q ss_pred             CCCCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCCch---HHH-HHHHcCCCeE--EeCCCCCchhH-HHHhhC-
Q 016660          199 VEVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFE-IGKRFGVTEF--VNSKNCGDKSI-IIDMTD-  267 (385)
Q Consensus       199 ~~~~~~VlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~~---~~~-~~~~lg~~~v--v~~~~~~~~~~-i~~~~~-  267 (385)
                      .-.+.++||.|+   +++|...++.+...|+ +|+.+.++++   +.+ +.++++....  .|..+...... +..... 
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   85 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK   85 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence            335678999986   5899999999988999 7887766532   222 2234453222  23322111111 222222 


Q ss_pred             -CCccEEEEccC
Q 016660          268 -GGADYCFECVG  278 (385)
Q Consensus       268 -g~~d~vid~~g  278 (385)
                       +.+|++|+++|
T Consensus        86 ~g~iD~lv~nAG   97 (272)
T PRK08159         86 WGKLDFVVHAIG   97 (272)
T ss_pred             cCCCcEEEECCc
Confidence             36899999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	385
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		4e-99
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		9e-96
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		7e-79
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		9e-79
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		1e-78
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		8e-78
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		1e-74
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-70
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-70
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		2e-70
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		6e-70
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		8e-70
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		9e-70
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		1e-69
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		1e-69
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		1e-69
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		2e-69
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		3e-69
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		5e-69
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		7e-69
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		2e-68
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		2e-68
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		2e-67
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		6e-67
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-66
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		3e-66
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-65
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-65
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		3e-64
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		4e-64
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		5e-62
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		4e-34
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		3e-17
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		1e-13
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		2e-13
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		1e-12
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		2e-12
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		2e-12
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		9e-12
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		9e-12
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		1e-11
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		2e-11
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		3e-11
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		5e-11
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		1e-10
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		2e-10
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		3e-10
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		4e-10
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		4e-10
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		5e-10
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		3e-09
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		5e-09
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		5e-09
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		6e-09
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		7e-09
1y9a_A	360	Alcohol Dehydrogenase From Entamoeba Histolotica In		1e-08
3fpc_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		1e-08
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		1e-08
2oui_A	360	D275p Mutant Of Alcohol Dehydrogenase From Protozoa		2e-08
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		5e-08
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		1e-07
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		1e-07
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		2e-07
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		1e-06
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		2e-06
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		1e-05
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		2e-05
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		6e-05
1nto_A	347	N249y Mutant Of Alcohol Dehydrogenase From The Arch		6e-05
3m6i_A	363	L-Arabinitol 4-Dehydrogenase Length = 363		1e-04
1r37_A	347	Alcohol Dehydrogenase From Sulfolobus Solfataricus		1e-04
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		1e-04
1uuf_A	369	Crystal Structure Of A Zinc-Type Alcohol Dehydrogen		4e-04
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		7e-04

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  358 bits (918), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 176/378 (46%), Positives = 252/378 (66%), Gaps = 11/378 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T G+ I C+AA+A  P +PLVI++V V PP + EVR++I+ T+LCH+D   W  KD   +
Sbjct: 2   TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGL 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLC----SAFPF 125
           FP ILGHEA                    IP + A+C EC  C+S K NLC    SA   
Sbjct: 62  FPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGV 121
Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DPT P ++ CLL CG
Sbjct: 122 GI---MMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCG 177
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           V TG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+K+E  K+F
Sbjct: 178 VPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF 237
Query: 246 GVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
           GV EFVN K+     + +I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV 
Sbjct: 238 GVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 297
Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
             G ++S   F+++ +G++  G+ FGG K+++ +P L+++YM+KE+++D+++TH +   E
Sbjct: 298 ASGQEISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGE 356
Query: 364 INSAFDLLIKGKCLRCVI 381
           IN AFDLL +G CLRCV+
Sbjct: 357 INKAFDLLHEGTCLRCVL 374

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  347 bits (889), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 170/380 (44%), Positives = 245/380 (64%), Gaps = 5/380 (1%)
Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           S+ T G+ I C+AA+A  P +PLVI++V V PP + EVRV+++ T+LCH+D   W  KD 
Sbjct: 17  SSATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDP 76
Query: 67  PAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             +FP +LGHEA                    IP + A+C EC  C+S K NLC      
Sbjct: 77  EGLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAA 136
Query: 127 ISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DP  P  + CLL CG
Sbjct: 137 TGVGVMMNDRKSRFS-INGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCG 195
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           V TG+GA W TA VE GS V +FGLG++GLAVAEGA+  GA+RIIG+D+ S+KF+  K F
Sbjct: 196 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNF 255
Query: 246 GVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
           GVTEF+N K      + +I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV 
Sbjct: 256 GVTEFINPKEHEQPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVA 315
Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
             G ++S   F+++ +G++  G+ FGG K++S +P L+ +Y+ KE+++D+++TH M   +
Sbjct: 316 ASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPSLVDKYLKKEIKVDEYITHNMTLAD 374
Query: 364 INSAFDLLIKGKCLRCVIWM 383
           IN AFDL+  G CLR V+ M
Sbjct: 375 INKAFDLMHDGDCLRVVLDM 394

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  290 bits (743), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 154/374 (41%), Positives = 227/374 (60%), Gaps = 4/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           +A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    
Sbjct: 1   SANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGC 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHE                     IP ++  C EC  C + K NLC         
Sbjct: 61  FPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG
Sbjct: 121 GLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE
Sbjct: 180 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            +N ++     + ++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G 
Sbjct: 240 CINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGE 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
           +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN A
Sbjct: 300 EIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKA 358
Query: 368 FDLLIKGKCLRCVI 381
           F+L+  GK +R V+
Sbjct: 359 FELMHSGKSIRTVV 372

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  290 bits (742), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 154/373 (41%), Positives = 226/373 (60%), Gaps = 4/373 (1%)
Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 2   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 61
Query: 71  PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGHE                     IP ++  C EC  C + K NLC          
Sbjct: 62  PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 122 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 180
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 181 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 240
Query: 251 VNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 308
           +N ++     + ++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G +
Sbjct: 241 INPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEE 300
Query: 309 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF 368
           ++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN AF
Sbjct: 301 IATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAF 359
Query: 369 DLLIKGKCLRCVI 381
           +L+  GK +R V+
Sbjct: 360 ELMHSGKSIRTVV 372

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  290 bits (742), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 154/373 (41%), Positives = 226/373 (60%), Gaps = 4/373 (1%)
Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60
Query: 71  PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGHE                     IP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 121 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239
Query: 251 VNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 308
           +N ++     + ++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G +
Sbjct: 240 INPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEE 299
Query: 309 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF 368
           ++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN AF
Sbjct: 300 IATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAF 358
Query: 369 DLLIKGKCLRCVI 381
           +L+  GK +R V+
Sbjct: 359 ELMHSGKSIRTVV 371

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  287 bits (734), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 153/373 (41%), Positives = 225/373 (60%), Gaps = 4/373 (1%)
Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60
Query: 71  PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGH                      IP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 121 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239
Query: 251 VNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 308
           +N ++     + ++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G +
Sbjct: 240 INPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEE 299
Query: 309 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF 368
           ++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN AF
Sbjct: 300 IATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAF 358
Query: 369 DLLIKGKCLRCVI 381
           +L+  GK +R V+
Sbjct: 359 ELMHSGKSIRTVV 371

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  276 bits (706), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 147/374 (39%), Positives = 219/374 (58%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AA+A    +PLVI+E+ VD P+++E+R++II T +CH+D+           
Sbjct: 2   TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE                     IP F++ C EC  C+S K N C       SP
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+ P +  CLL CGVSTG
Sbjct: 122 DVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTG 180
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+  +KFE  K FG T+
Sbjct: 181 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 240
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
           FVN  +  +    ++  MT+GG D+  ECVG   +++ A   C KGWG ++++G      
Sbjct: 241 FVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL-H 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            ++    +++ +G+   GS+FGG K K  +P ++K Y+DK+++LD+F+TH M  E +N A
Sbjct: 300 DVATRPIQLI-AGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDA 358
Query: 368 FDLLIKGKCLRCVI 381
            DL+  GKC+R V+
Sbjct: 359 IDLMKHGKCIRTVL 372

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  262 bits (670), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/378 (38%), Positives = 213/378 (56%), Gaps = 14/378 (3%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C SD          A 
Sbjct: 2   TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSD-DHVVSGTLVAP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F+  C +C  C+  +GNLC       + 
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK-----NL 115
Query: 130 WMPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG
Sbjct: 116 SMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCG 174
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  
Sbjct: 175 FSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 234
Query: 246 GVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
           G TE VN ++     + ++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV 
Sbjct: 235 GATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVP 294
Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
                LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 295 PDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 353
Query: 364 INSAFDLLIKGKCLRCVI 381
           IN  FDLL  GK +R ++
Sbjct: 354 INEGFDLLRSGKSIRTIL 371

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  262 bits (670), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/378 (38%), Positives = 213/378 (56%), Gaps = 14/378 (3%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C SD          A 
Sbjct: 2   TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSD-DHVVSGTLVAP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F+  C +C  C+  +GNLC       + 
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK-----NL 115
Query: 130 WMPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG
Sbjct: 116 SMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCG 174
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  
Sbjct: 175 FSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 234
Query: 246 GVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
           G TE VN ++     + ++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV 
Sbjct: 235 GATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVP 294
Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
                LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+
Sbjct: 295 PDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 353
Query: 364 INSAFDLLIKGKCLRCVI 381
           IN  FDLL  GK +R ++
Sbjct: 354 INEGFDLLRSGKSIRTIL 371

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  262 bits (669), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 212/381 (55%), Gaps = 8/381 (2%)
Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           S  T GK I+C+AAIA   G+PL I+EV V PP +HEVR++II TSLCH+D T    K  
Sbjct: 1   SMGTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFE 60
Query: 67  PAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK 126
              FP I+GHEA                    IP +   C +C  C S   NLC      
Sbjct: 61  GLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNL 120
Query: 127 ISP----WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 182
            SP     +  D+TSRF   +G+ ++HF   S+FS+YTV+   ++ K+D      R CLL
Sbjct: 121 KSPASDQQLMEDKTSRFT-CKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLL 179
Query: 183 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242
            CG STG GAA   A V  GST  +FGLG +GL+   G +  GA+RIIG+D+ SEKF   
Sbjct: 180 GCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKA 239
Query: 243 KRFGVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 300
           K  G T+ +N ++     + +II++T GG D+  +C G +  ++ A  C   GWG    +
Sbjct: 240 KALGATDCLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFI 299
Query: 301 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 360
           GV      L++   E++  G+ + G+ FGG K+   IP L+  Y +K+  LD  VTH + 
Sbjct: 300 GVAAGSKGLTVFPEELI-IGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLP 358
Query: 361 FEEINSAFDLLIKGKCLRCVI 381
           F++I+ AFDL+ +GK +R ++
Sbjct: 359 FDKISEAFDLMNQGKSIRTIL 379

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  261 bits (666), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 140/374 (37%), Positives = 209/374 (55%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            VN ++     + ++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV     
Sbjct: 240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  G+ +R ++
Sbjct: 359 FDLLRSGESIRTIL 372

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  260 bits (665), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 209/374 (55%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDQVVS-GTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  ++F   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKEVGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            VN ++     + ++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV     
Sbjct: 240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  G+ +R ++
Sbjct: 359 FDLLRSGESIRTIL 372

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  260 bits (664), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 140/374 (37%), Positives = 208/374 (55%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            VN ++     + ++ +M++GG D+ FE +G    +  A +CC++ +G +++ GV     
Sbjct: 240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVITGVPPDSQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  G+ +R ++
Sbjct: 359 FDLLRSGESIRTIL 372

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  260 bits (664), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/374 (37%), Positives = 208/374 (55%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            VN ++     + ++ +M++GG D+ FE +G    +  A +CC++ +G +++ GV     
Sbjct: 240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVISGVPPDSQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  G+ +R ++
Sbjct: 359 FDLLRSGESIRTIL 372

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  259 bits (663), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/374 (37%), Positives = 208/374 (55%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            VN ++     + ++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV     
Sbjct: 240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L SG+   G +FGG K+K  +P L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSMNPM-LLLSGRTWKGCIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  G+ +R ++
Sbjct: 359 FDLLRSGESIRTIL 372

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  259 bits (663), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/374 (37%), Positives = 208/374 (55%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG  GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            VN ++     + ++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV     
Sbjct: 240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  G+ +R ++
Sbjct: 359 FDLLRSGESIRTIL 372

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  259 bits (661), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 208/374 (55%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            VN ++     + ++ +M++GG D+ FE +G    +  A +CC++ +G ++++ V     
Sbjct: 240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVAVTPDSQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  G+ +R ++
Sbjct: 359 FDLLRSGESIRTIL 372

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  258 bits (660), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 209/374 (55%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP +   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            VN ++     + ++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV     
Sbjct: 240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  G+ +R ++
Sbjct: 359 FDLLRSGESIRTIL 372

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  258 bits (658), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 208/374 (55%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP     C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            VN ++     + ++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV     
Sbjct: 240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  G+ +R ++
Sbjct: 359 FDLLRSGESIRTIL 372

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  257 bits (657), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 208/374 (55%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP +   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG  GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            VN ++     + ++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV     
Sbjct: 240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  G+ +R ++
Sbjct: 359 FDLLRSGESIRTIL 372

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  255 bits (652), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/374 (36%), Positives = 213/374 (56%), Gaps = 6/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+E+ V PP + EVR++I+ T +C +D    K     + 
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIK-GTMVSK 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP I+GHEA                    IP FL  C EC  CR+  GNLC         
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDI-TGR 119
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D T+RF   +G+ +HHF++ S+F+EYTV+D + V K+D   PP + CL+ CG STG
Sbjct: 120 GVLADGTTRFT-CKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KFE     G TE
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE 238
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            ++ K+       ++ +MT     Y FE +G    + +A A C   +G ++V+GV     
Sbjct: 239 CISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAK 298
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            L+     +L +G+   G +FGGLK++ D+P L+  ++ K+ +LD+ +TH + F++I+  
Sbjct: 299 MLTYDPM-LLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEG 357
Query: 368 FDLLIKGKCLRCVI 381
           F+LL  G+ +R V+
Sbjct: 358 FELLNSGQSIRTVL 371

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  255 bits (652), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/374 (36%), Positives = 213/374 (56%), Gaps = 6/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+E+ V PP + EVR++I+ T +C +D    K     + 
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIK-GTMVSK 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP I+GHEA                    IP FL  C EC  CR+  GNLC         
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDI-TGR 119
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D T+RF   +G+ +HHF++ S+F+EYTV+D + V K+D   PP + CL+ CG STG
Sbjct: 120 GVLADGTTRFT-CKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KFE     G TE
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE 238
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            ++ K+       ++ +MT     Y FE +G    + +A A C   +G ++V+GV     
Sbjct: 239 CISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAK 298
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            L+     +L +G+   G +FGGLK++ D+P L+  ++ K+ +LD+ +TH + F++I+  
Sbjct: 299 MLTYDPM-LLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEG 357
Query: 368 FDLLIKGKCLRCVI 381
           F+LL  G+ +R V+
Sbjct: 358 FELLNSGQSIRTVL 371

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  252 bits (644), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 144/378 (38%), Positives = 211/378 (55%), Gaps = 11/378 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +CH+D+     K   A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDINATDPKK-KAL 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF-PFK-- 126
           FP +LGHE                     IP F   C  C  C S   NLC     FK  
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120
Query: 127 -ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG
Sbjct: 121 TIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCG 179
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K  
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239
Query: 246 GVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
           G T+ +N +      + +I ++T GG DY  +C G A  ++ A  C   GWG   V+G  
Sbjct: 240 GATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK 299
Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
               ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+ +LD  VTH + FE 
Sbjct: 300 V--DEMTIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFES 356
Query: 364 INSAFDLLIKGKCLRCVI 381
           IN A DL+ +GK +R ++
Sbjct: 357 INDAIDLMKEGKSIRTIL 374

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  251 bits (640), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 138/374 (36%), Positives = 204/374 (54%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C SD       +    
Sbjct: 2   TAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVS-GNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF    G+ IHHFV VS+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRF-TCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            +N ++     + ++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV     
Sbjct: 240 CINPQDYKKPIQEVLKEMTDGGVDFSFEVIGQLDTMMASLLCCHEACGTSVIVGVPPDSQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L +G+   G++FGG K+K  +P L+  +M K+  LD  +T+ + FE+IN  
Sbjct: 300 NLSINPM-LLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  GK +R V+
Sbjct: 359 FDLLRSGKSIRTVL 372

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  249 bits (635), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 135/374 (36%), Positives = 203/374 (54%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +CH+D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICHTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            +N ++     + ++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV     
Sbjct: 240 CINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  GK +R V+
Sbjct: 359 FDLLHSGKSIRTVL 372

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  249 bits (635), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 143/378 (37%), Positives = 210/378 (55%), Gaps = 11/378 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +C +D+     K   A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKK-KAL 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF-PFK-- 126
           FP +LGHE                     IP F   C  C  C S   NLC     FK  
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120
Query: 127 -ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG
Sbjct: 121 TIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCG 179
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K  
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239
Query: 246 GVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
           G T+ +N +      + +I ++T GG DY  +C G A  ++ A  C   GWG   V+G  
Sbjct: 240 GATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK 299
Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
               ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+ +LD  VTH + FE 
Sbjct: 300 V--DEMTIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFES 356
Query: 364 INSAFDLLIKGKCLRCVI 381
           IN A DL+ +GK +R ++
Sbjct: 357 INDAIDLMKEGKSIRTIL 374

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  246 bits (627), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 202/374 (54%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +C +D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            +N ++     + ++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV     
Sbjct: 240 CINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  GK +R V+
Sbjct: 359 FDLLHSGKSIRTVL 372

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  245 bits (625), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 202/374 (54%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +C +D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICGTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            +N ++     + ++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV     
Sbjct: 240 CINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  GK +R V+
Sbjct: 359 FDLLHSGKSIRTVL 372

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  242 bits (617), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 201/374 (53%), Gaps = 5/374 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +C +D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
            +N ++     + ++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV     
Sbjct: 240 CINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQ 299
Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            LS++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN  
Sbjct: 300 NLSINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEG 358
Query: 368 FDLLIKGKCLRCVI 381
           FDLL  GK +  V+
Sbjct: 359 FDLLHSGKSICTVL 372

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  241 bits (615), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 135/377 (35%), Positives = 203/377 (53%), Gaps = 9/377 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSD--VTFWKMKDFP 67
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C +D  V    M    
Sbjct: 2   TAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMV--- 58
Query: 68  AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
              P ILGHEA                    IP  +  C +C  C++ + N C       
Sbjct: 59  TPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSN 118
Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
                +D TSRF   R + IHHF+ +S+FS+YTV+D   V K+D   P  + CL+ CG S
Sbjct: 119 PQGTLQDGTSRFT-CRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFS 177
Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           TG G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G 
Sbjct: 178 TGYGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGA 237
Query: 248 TEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 305
           TE +N ++     + ++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV   
Sbjct: 238 TECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPD 297
Query: 306 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 365
              LS++   +L +G+   G++ GG K+K  +P L+  +M K+  LD  +TH + FE+IN
Sbjct: 298 SQNLSMNPM-LLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKIN 356
Query: 366 SAFDLLIKGKCLRCVIW 382
             FDLL  GK +R ++ 
Sbjct: 357 EGFDLLHSGKSIRTILM 373

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  234 bits (598), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 205/375 (54%), Gaps = 9/375 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I C+AA+A  P +PL ++ + V PP +HEVR++I+ + +C SD +  K +  P+ 
Sbjct: 3   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLK-EIIPSK 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA+                   IP F+  C  C  C+S   N C         
Sbjct: 62  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKT 121
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP  P   +CL+ CG +TG
Sbjct: 122 GLMADMTSRF-TCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPL-ESCLIGCGFATG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV    +KF      G TE
Sbjct: 180 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE 239
Query: 250 FVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
            +N K+  DK I   I + T+GG DY  EC G    +  A      G G T+VLG+  P 
Sbjct: 240 CLNPKDY-DKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASP- 297
Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 366
           ++       +L +G+ L GS+FGG K + ++  L+  YM K++ ++  V+ ++  ++IN 
Sbjct: 298 NERLPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINK 356
Query: 367 AFDLLIKGKCLRCVI 381
           AF+LL  G+ +R ++
Sbjct: 357 AFELLSSGQGVRSIM 371

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 161/364 (44%), Gaps = 5/364 (1%)
Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEA 78
           AA+    G    +  + +  P   EV V+++ T +CH+D+     K +P   P +LGHE 
Sbjct: 9   AAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQK-YPVPLPAVLGHEG 67
Query: 79  IXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-ISPWMPRDQTS 137
                               +  +   C +C  C +     CS F  +  S        +
Sbjct: 68  SGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHA 126
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
                +G    HF + SSF+ Y +    + VKV   VP      L CG+ TG GA     
Sbjct: 127 LCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINAL 186
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
            V   S+ V +G G++GL+    A++CGA+ II VD++  + E+ K+ G T  +NSK   
Sbjct: 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQD 246
Query: 258 DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL 317
             + I ++TDGG ++  E  G   ++++         GK  V+G  Q G+       ++L
Sbjct: 247 PVAAIKEITDGGVNFALESTGSPEILKQGVDALGI-LGKIAVVGAPQLGTTAQFDVNDLL 305
Query: 318 HSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL 377
             GK ++G + G    K  IP L++ Y   +   D+ V     F+EIN A     KG  L
Sbjct: 306 LGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGITL 364
Query: 378 RCVI 381
           + +I
Sbjct: 365 KPII 368

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 147/366 (40%), Gaps = 46/366 (12%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFPRI 73
           +AA+  A G+PL IDEV +  P   +++V I  + +CH+D+      W +K  P   P I
Sbjct: 27  KAAVVRAFGKPLTIDEVPIPQPGPGQIQVAIQASGVCHTDLHAAEGDWPVKPNP---PFI 83
Query: 74  LGHEAIX-XXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE +                    IP     C  C  C      LC            
Sbjct: 84  PGHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCE----------- 132
Query: 133 RDQTSRFKDLRGETIHHFVSVS-SFSEYTVLDIAHVVKVDPTVPPNR-ACLLSCGVSTGV 190
                       E ++   SV+  F+EY V D   V  +   +  N  A +L  GV+  V
Sbjct: 133 ------------EQLNTGYSVNGGFAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVT--V 178
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
               +  + + G  VVI G+G +G    + AR  G   +  VD+   K ++ +R G T  
Sbjct: 179 YKGLKVTDTKPGDWVVISGIGGLGHMAVQYARAMG-LNVAAVDIDDRKLDLARRLGATVT 237
Query: 251 VNSKNCGDKSIII-DMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 309
           VN+K   D +  I   TDGGA             ++A     +  G T+ L    PG   
Sbjct: 238 VNAKTVADPAAYIRKETDGGAQGVLVTAVSPKAFEQALGMVAR--GGTVSLNGLPPGD-F 294
Query: 310 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 369
            LS F ++ +G  + GS+ G    + D+   L    D ++   K      K E+IN+ FD
Sbjct: 295 PLSIFNMVLNGVTVRGSIVG---TRLDLQESLDFAADGKV---KATIQTGKLEDINAIFD 348
Query: 370 LLIKGK 375
            + +G 
Sbjct: 349 DMRQGN 354

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 142/370 (38%), Gaps = 56/370 (15%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFPRI 73
           +AA+  A G PL IDEV V  P   +V+V+I  + +CH+D+      W +K      P I
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVK---PTLPFI 60
Query: 74  LGHEAIXXXXXXXXXXXXXXXX-XXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE +                    +P   + C  C  C      LC            
Sbjct: 61  PGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCE----------- 109
Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR------ACLLSCGV 186
           + Q + +    G           + EY V D  +V      + P++      A +L  GV
Sbjct: 110 KQQNTGYSVNGG-----------YGEYVVADPNYV-----GLLPDKVGFVEIAPILCAGV 153
Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           +  V    +  +   G  VVI G+G +G    + AR  G  R+  VD+   K  + +R G
Sbjct: 154 T--VYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMG-LRVAAVDIDDAKLNLARRLG 210
Query: 247 VTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
               VN+++  D +  +    GGA              +A    R+  G TI L    PG
Sbjct: 211 AEVAVNARDT-DPAAWLQKEIGGAHGVLVTAVSPKAFSQAIGMVRR--GGTIALNGLPPG 267
Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELD-KFVTHEMKFEEIN 365
                  F+V+  G  + GS+ G    +SD    L+  +D     D K      K +++N
Sbjct: 268 D-FGTPIFDVVLKGITIRGSIVG---TRSD----LQESLDFAAHGDVKATVSTAKLDDVN 319
Query: 366 SAFDLLIKGK 375
             F  L +GK
Sbjct: 320 DVFGRLREGK 329

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 140/346 (40%), Gaps = 53/346 (15%)
Query: 31  IDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE--AIXXXXXXXXX 88
           +  V +  P   ++ V++    +C +D       +FP+  P  LGHE   I         
Sbjct: 37  VRNVGIPEPGPDDLLVKVEACGICGTDRHLLH-GEFPSTPPVTLGHEFCGIVVEAGSAVR 95
Query: 89  XXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH 148
                      P+    C  C  C++ + NLC                   ++LR   IH
Sbjct: 96  DIAPGARITGDPNI--SCGRCPQCQAGRVNLC-------------------RNLRAIGIH 134
Query: 149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTV 205
                  F+EY ++      ++  T+ P        L+C +          + ++ GSTV
Sbjct: 135 RD---GGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLH-----GVDLSGIKAGSTV 186
Query: 206 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD--KSII- 262
            I G G IGL   + ARL GAT +I     + K  + +  G T  V+  + GD  ++I  
Sbjct: 187 AILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVD-PSAGDVVEAIAG 245
Query: 263 -IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK 321
            + +  GG D   EC G+A  V+++    + G G  ++LGV   G ++ +  F++L    
Sbjct: 246 PVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFREL 304
Query: 322 ILMGSLFGGLKAKSDIPILLKRYMD----KELELDKFVTHEMKFEE 363
            ++GS           P + +R  D      +E+D+ ++  +  +E
Sbjct: 305 RVLGSFIN--------PFVHRRAADLVATGAIEIDRXISRRISLDE 342

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 144/362 (39%), Gaps = 40/362 (11%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FPRILG 75
           +AA+     EPL I EV     +  EV VRI    +CH+D+      D+P     P I G
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDL-HAAHGDWPVKPKLPLIPG 60
Query: 76  HEAIXXXXXXX-XXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +                    IP   + C  C  C S +  LC              
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EH 108
Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           Q +    + G           ++EY      +VVK+   +    A  + C GV+T    A
Sbjct: 109 QKNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTY--KA 156
Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
            +    + G  V I+G+G +G    + A+  G   ++ VD+  EK E+ K  G    VN 
Sbjct: 157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLVVNP 215
Query: 254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 313
               D +  +    GG              Q AY   R+G G  +++G+  P  ++ +  
Sbjct: 216 LK-EDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGL--PPEEMPIPI 271
Query: 314 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 373
           F+ + +G  ++GS+ G    + D+   L+   + ++   K +      E+IN  FD ++K
Sbjct: 272 FDTVLNGIKIIGSIVG---TRKDLQEALQFAAEGKV---KTIIEVQPLEKINEVFDRMLK 325
Query: 374 GK 375
           G+
Sbjct: 326 GQ 327

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 150/383 (39%), Gaps = 36/383 (9%)
Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           ++  A +     +PLV  E  +       + V I+   +C SDV  ++ +D     P IL
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75
Query: 75  GHEAIXXXXXXXXXXXXXXXXXXXIPHFLA-----DCTECVGCR-SKKGNLCSAFPFKIS 128
           GHE                         +       C EC  C+ SK+  LC   P +  
Sbjct: 76  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLC---PNRKV 132
Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AHVVKVDPTVPPNRACLLSCGVS 187
             + R   S +  LRG           +S + VLD    V+KV      +   +  C  +
Sbjct: 133 YGINRG-CSEYPHLRG----------CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGA 181
Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           T   A         G TVVI G G +GL     AR  GA  +I +     + ++ +  G 
Sbjct: 182 TAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 241
Query: 248 TEFVNSKNCG---DKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
              +N +       +  I+D+T G GAD+  E  G +  + E     R+G G   V GV 
Sbjct: 242 DLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVA 300
Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRY----MDKELELDKFVTHEM 359
            P   +    +E L    +L  + F G+   SD    +K       + +L L K +TH +
Sbjct: 301 VPQDPVPFKVYEWL----VLKNATFKGIWV-SDTSHFVKTVSITSRNYQL-LSKLITHRL 354
Query: 360 KFEEINSAFDLLIKGKCLRCVIW 382
             +E N A +L+   + L+ +++
Sbjct: 355 PLKEANKALELMESREALKVILY 377

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 143/362 (39%), Gaps = 40/362 (11%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FPRILG 75
           +AA+     EPL I EV     +  EV VRI    +CH+D+      D+P     P I G
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDL-HAAHGDWPVKPKLPLIPG 60
Query: 76  HEAIXXXXXXX-XXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +                    IP   + C  C  C S +  LC              
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EH 108
Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           Q +    + G           ++EY      +VVK+   +    A  + C GV+T    A
Sbjct: 109 QKNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTY--KA 156
Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
            +    + G  V I+G+G  G    + A+  G   ++ VD+  EK E+ K  G    VN 
Sbjct: 157 LKVTGAKPGEWVAIYGIGGFGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLVVNP 215
Query: 254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 313
               D +  +    GG              Q AY   R+G G  +++G+  P  ++ +  
Sbjct: 216 LK-EDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGL--PPEEMPIPI 271
Query: 314 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 373
           F+ + +G  ++GS+ G    + D+   L+   + ++   K +      E+IN  FD ++K
Sbjct: 272 FDTVLNGIKIIGSIVG---TRKDLQEALQFAAEGKV---KTIIEVQPLEKINEVFDRMLK 325
Query: 374 GK 375
           G+
Sbjct: 326 GQ 327

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 142/367 (38%), Gaps = 42/367 (11%)
Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA--VFP 71
           P   +AA+  A G PL I+EV V  P   +V V+I  + +CH+D+   +  D+P     P
Sbjct: 4   PQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAE-GDWPVKPPLP 62
Query: 72  RILGHEAIXXXXXXXXXXXXXXXX-XXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
            I GHE +                    IP     C  C  C +    LC +        
Sbjct: 63  FIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCES-------- 114
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP-PNRACLLSCGVSTG 189
               Q +    + G           ++EY + D  +V  +   V     A +L  GV+  
Sbjct: 115 ----QQNTGYSVNG----------GYAEYVLADPNYVGILPKNVEFAEIAPILCAGVT-- 158
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           V    +  N   G  V I G+G +G    + AR  G   +  +D+   K E+ ++ G + 
Sbjct: 159 VYKGLKQTNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKLGASL 217
Query: 250 FVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 309
            VN++   D    I    GGA          S   +A    R+  G TI L V  P    
Sbjct: 218 TVNARQE-DPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARR--GGTIAL-VGLPPGDF 273
Query: 310 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE-LDKFVTHEMKFEEINSAF 368
               F+V+  G  + GS+ G    ++D    L+  +D   E L K   H  K ++IN   
Sbjct: 274 PTPIFDVVLKGLHIAGSIVG---TRAD----LQEALDFAGEGLVKATIHPGKLDDINQIL 326
Query: 369 DLLIKGK 375
           D +  G+
Sbjct: 327 DQMRAGQ 333

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 19/240 (7%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
           ++E+G+TV + G+G +GL    GA+L GA RII V       +  K +G T+ VN K+  
Sbjct: 163 DIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGP 222
Query: 258 DKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE- 315
            +S I+++T+G G D      G A ++  A    + G G    +     G  L +   E 
Sbjct: 223 IESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPG-GTIANVNYFGEGEVLDVPRLEW 281
Query: 316 ---VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 371
              + H  K + G L  G + + +  I L  Y  K ++  K VTH  + F+ I  AF L+
Sbjct: 282 GCGMAH--KTIKGGLCPGGRLRMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAFMLM 337

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 19/240 (7%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
           ++E+G+TV + G+G +GL    GA+L GA RII V       +  K +G T+ VN K+  
Sbjct: 163 DIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGP 222
Query: 258 DKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE- 315
            +S I+++T+G G D      G A ++  A    + G G    +     G  L +   E 
Sbjct: 223 IESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPG-GTIANVNYFGEGEVLPVPRLEW 281
Query: 316 ---VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 371
              + H  K + G L  G + + +  I L  Y  K ++  K VTH  + F+ I  AF L+
Sbjct: 282 GCGMAH--KTIKGGLCPGGRLRMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAFMLM 337

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 11/214 (5%)
Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 221
           +++AH+ K    +P   A ++   ++TG   A   A++E+GS+VV+ G+G++GL    GA
Sbjct: 131 MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGA 186
Query: 222 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLA 280
           +L GA RIIGV       E  K +G T+ +N KN      ++ +T+G G D      G +
Sbjct: 187 KLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIVDQVMKLTNGKGVDRVIMAGGGS 246
Query: 281 SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL--KAKSDIP 338
             + +A    + G    I+  ++  GS  +L    V     +   ++ GGL    +  + 
Sbjct: 247 ETLSQAVKMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRME 303
Query: 339 ILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 371
            L+     K ++  K VTH  + F+ I  AF L+
Sbjct: 304 RLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLM 337

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 11/214 (5%)
Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 221
           +++AH+ K    +P   A ++   ++TG   A   A++++GS+VV+ G+G++GL    GA
Sbjct: 131 MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGIAGA 186
Query: 222 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLA 280
           +L GA RIIGV       E  K +G T+ +N KN      ++ +T+G G D      G +
Sbjct: 187 KLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIVDQVMKLTNGKGVDRVIMAGGGS 246
Query: 281 SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL--KAKSDIP 338
             + +A +  + G    I+  ++  GS  +L    V     +   ++ GGL    +  + 
Sbjct: 247 ETLSQAVSMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRME 303
Query: 339 ILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 371
            L+     K ++  K VTH  + F+ I  AF L+
Sbjct: 304 RLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLM 337

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 102/264 (38%), Gaps = 23/264 (8%)
Query: 27  EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDFPAVFPRILGHEAIXXXXX 84
           EP+V+D +    P   E+ +++    LCHSD+    M    +    P  LGHE +     
Sbjct: 12  EPVVVD-IPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAE 70
Query: 85  XXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG 144
                           +    C  C  C   + N C+                R  DL G
Sbjct: 71  LGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCT----------------RAADL-G 113
Query: 145 ETIHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGS 203
            T     S  S +EY ++D A H+V +    P   A L   G++     +     +  GS
Sbjct: 114 ITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGS 173
Query: 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIII 263
           T V+ G+G +G    +  R   A R+I VD+  ++  + +  G    V S   G    I 
Sbjct: 174 TAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKS-GAGAADAIR 232
Query: 264 DMTDG-GADYCFECVGLASLVQEA 286
           ++T G GA   F+ VG  S +  A
Sbjct: 233 ELTGGQGATAVFDFVGAQSTIDTA 256

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 136/349 (38%), Gaps = 39/349 (11%)
Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHEAIXXXXXX 85
           L +++  +  P   EV +++    +C SDV ++   ++ DF    P ++GHEA       
Sbjct: 16  LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKV 75
Query: 86  XXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE 145
                               C  C  C+  K NLC    F  +P  P D         G 
Sbjct: 76  GKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATP--PDD---------GN 124
Query: 146 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV 205
              ++V  + F            K+   V      LL   +S GV  A R A V++G+TV
Sbjct: 125 LARYYVHAADFCH----------KLPDNVSLEEGALLE-PLSVGV-HACRRAGVQLGTTV 172
Query: 206 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--VTEFVNSKNCGDKSIII 263
           ++ G G IGL     A+  GA  ++       + E+ K  G  VT  V+     + SII 
Sbjct: 173 LVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIE 231
Query: 264 DMTDGGADY---CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSG 320
            +     D      +C G    +       R G G  +++G+   GSQ+         + 
Sbjct: 232 RIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGM---GSQMVTVPLVNACAR 287
Query: 321 KILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 369
           +I + S+F   +  +D PI L+        + + VTH  K E+   AF+
Sbjct: 288 EIDIKSVF---RYCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFE 333

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 15/228 (6%)
Query: 156 FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++E+G+TV + G+G +
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIELGATVAVLGIGPV 178
Query: 214 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADY 272
           GL    GA+L GA RII V       +  K +G T+ VN K+   +S I+++T+G G D 
Sbjct: 179 GLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGPIESQIMNLTEGKGVDA 238
Query: 273 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE----VLHSGKILMGSLF 328
                G A ++  A    + G G    +     G  L +   E    + H  K + G L 
Sbjct: 239 AIIAGGNADIMATAVKIVKPG-GTIANVNYFGEGEVLPVPRLEWGCGMAH--KTIKGGLC 295
Query: 329 GGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 375
            G + +++  +L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 296 PGGRLRAE--MLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 142/341 (41%), Gaps = 30/341 (8%)
Query: 41  SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIP 100
           S++  VR +  S C SD+              ILGHEA+                   I 
Sbjct: 24  SYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVI- 82
Query: 101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYT 160
                   C     +   + + FP   +  +   + S FKD              F EY 
Sbjct: 83  ------VPCTTPDWRSLEVQAGFPQHSNGMLAGWKFSNFKD------------GVFGEYF 124
Query: 161 VLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA 218
            ++ A  ++  +   +P   A +++  ++TG   A   A++++GS+VV+ G+G++GL   
Sbjct: 125 HVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGI 183
Query: 219 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECV 277
            GA+L GA RIIGV       E  K +G T+ +N KN      ++ +T+G G D      
Sbjct: 184 AGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIVDQVMKLTNGKGVDRVIMAG 243
Query: 278 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL--KAKS 335
           G +  + +A +  + G    I+  ++  GS  +L    V     +   ++ GGL    + 
Sbjct: 244 GGSETLSQAVSMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRL 300
Query: 336 DIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 375
              +L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 301 RAEMLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 152/376 (40%), Gaps = 55/376 (14%)
Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF--PR 72
           ++ +AA+     EPL I++V +  P   EV +RI    +C +D+  WK  +    F  P 
Sbjct: 2   VKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPI 61
Query: 73  ILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           ILGHE                     +     D T C  CR  K N+C     +I P   
Sbjct: 62  ILGHENAGTIVEVGELAKVKKGDNVVVYATWGDLT-CRYCREGKFNICKN---QIIP--- 114
Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGVSTGVG 191
                      G+T +       FSEY ++  +  +VK++   P   A L   G +T +G
Sbjct: 115 -----------GQTTN-----GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAG-TTSMG 157
Query: 192 AAWRTANVEVGS----TVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFG 246
           A  R A   +       V++ G+G + +   +  + L     I+G+    +  +     G
Sbjct: 158 AI-RQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELG 216
Query: 247 VTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 305
                  K+   +S+I  +TDG GA    + VG             +  G  I++G++  
Sbjct: 217 ADYVSEMKDA--ESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQ-EGAIILVGME-- 271
Query: 306 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPIL-----LKRYMDKELELDKFVTHEMK 360
           G ++SL +F+     K L+GS +G L    D+  L     +K Y+ K           + 
Sbjct: 272 GKRVSLEAFDTAVWNKKLLGSNYGSLNDLEDVVRLSESGKIKPYIIK-----------VP 320
Query: 361 FEEINSAFDLLIKGKC 376
            ++IN AF  L +G+ 
Sbjct: 321 LDDINKAFTNLDEGRV 336

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 109/226 (48%), Gaps = 11/226 (4%)
Query: 156 FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++E+GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAV 178
Query: 214 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADY 272
           GL    GA+L GA RIIGV       E  K +G T+ +N KN   +  ++ +T+G G D 
Sbjct: 179 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDR 238
Query: 273 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL- 331
                G +  + +A    + G    I+  ++  GS  +L    V     +   ++ GGL 
Sbjct: 239 VIMAGGGSETLSQAVKMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLC 295
Query: 332 -KAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 375
              +     L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 296 PGGRLRAERLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 11/226 (4%)
Query: 156 FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++++GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGAV 178
Query: 214 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADY 272
           GL    GA+L GA RIIGV       E  K +G T+ +N KN      ++ +T+G G D 
Sbjct: 179 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIVDQVMKLTNGKGVDR 238
Query: 273 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL- 331
                G +  + +A +  + G    I+  ++  GS  +L    V     +   ++ GGL 
Sbjct: 239 VIMAGGGSETLSQAVSMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLC 295
Query: 332 -KAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 375
              +    +L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 296 PGGRLRAEMLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 147/361 (40%), Gaps = 51/361 (14%)
Query: 26  GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAVFPRILGHE 77
           G+PL ++++ +  P   +V ++I    +CHSDV   +        ++D     P  LGHE
Sbjct: 10  GKPLKLEDIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHE 69
Query: 78  AIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP-WMPRDQT 136
                                  +       C  CR  + +LC       SP W+  +  
Sbjct: 70  IAGRIEEVGDEVVGYSKGDLVAVNPWEGEGNCYYCRIGEEHLCD------SPRWLGINYD 123
Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWR 195
             + +        +V V  +     L     V+  P         L+C GV+T    A R
Sbjct: 124 GAYAE--------YVLVPHYKYLYKLRRLSAVEAAP---------LTCSGVTTY--RAVR 164
Query: 196 TANVEVGSTVVIFG----LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
            A+++   T+V+ G    LG++ + +A+   + GAT IIGVDV  E  E  KR G    +
Sbjct: 165 KASLDPSKTLVVIGAGGGLGTMAIQIAKA--VSGAT-IIGVDVREEALEAAKRAGADYVI 221
Query: 252 NSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS 310
           N+ +    S I  +T G GAD   + +  +      Y       GK +++G+   G+ L 
Sbjct: 222 NASSQDPVSEIRRITQGKGADAVID-LNNSEKTLSIYPYVLAKQGKYVMVGLF--GADLK 278
Query: 311 LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 370
             +  +  +    +GSL G    +SD   ++   + +  ++   VT  MK EE N A D 
Sbjct: 279 YHAPLITLNEVQFIGSLVGN---QSDFLGIMS--LAEAGKVKPMVTKTMKLEEANEAIDN 333
Query: 371 L 371
           L
Sbjct: 334 L 334

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 144/369 (39%), Gaps = 38/369 (10%)
Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILG 75
           A   T PG    + EV V  P   EV ++++ TS+C +D+  ++  ++       P+I G
Sbjct: 6   AIXKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXG 65
Query: 76  HEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE                            C +C  CR  + ++C              Q
Sbjct: 66  HEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVC--------------Q 111
Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
            ++   +  + +        F+EY V+   ++ K   ++PP  A L        +G A  
Sbjct: 112 NTKIFGVDTDGV--------FAEYAVVPAQNIWKNPKSIPPEYATL-----QEPLGNAVD 158
Query: 196 T--ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
           T  A    G +V+I G G +GL     A+  GA  +I  +    + E+ K+ G    +N 
Sbjct: 159 TVLAGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINP 218
Query: 254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 312
                   + D+TDG G D   E  G    +++         G+  +LG+  PG ++++ 
Sbjct: 219 FEEDVVKEVXDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGL-YPG-KVTI- 274
Query: 313 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 371
            F  L   K L      G         + +     +L LD  +TH+ K F++   AF+L 
Sbjct: 275 DFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELX 334
Query: 372 IKGKCLRCV 380
             GK  + V
Sbjct: 335 RAGKTGKVV 343

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 144/369 (39%), Gaps = 38/369 (10%)
Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILG 75
           A   T PG    + EV V  P   EV ++++ TS+C +D+  ++  ++       P+I G
Sbjct: 7   AIXKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXG 66
Query: 76  HEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE                            C +C  CR  + ++C              Q
Sbjct: 67  HEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVC--------------Q 112
Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
            ++   +  + +        F+EY V+   ++ K   ++PP  A L        +G A  
Sbjct: 113 NTKIFGVDTDGV--------FAEYAVVPAQNIWKNPKSIPPEYATL-----QEPLGNAVD 159
Query: 196 T--ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
           T  A    G +V+I G G +GL     A+  GA  +I  +    + E+ K+ G    +N 
Sbjct: 160 TVLAGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINP 219
Query: 254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 312
                   + D+TDG G D   E  G    +++         G+  +LG+  PG ++++ 
Sbjct: 220 FEEDVVKEVXDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGL-YPG-KVTI- 275
Query: 313 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 371
            F  L   K L      G         + +     +L LD  +TH+ K F++   AF+L 
Sbjct: 276 DFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELX 335
Query: 372 IKGKCLRCV 380
             GK  + V
Sbjct: 336 RAGKTGKVV 344

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 141/368 (38%), Gaps = 39/368 (10%)
Query: 21  IATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHE 77
           +   PG+ L ++   +  P  +EV +++    +C SDV +W   ++ DF    P +LGHE
Sbjct: 11  VVHGPGD-LRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHE 69
Query: 78  AIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD-QT 136
           A                         A       C+  + NL     F  +P  P D   
Sbjct: 70  ASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNLSPTIFFCATP--PDDGNL 127
Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
            RF        +      +F E  +++                  LS G+      A R 
Sbjct: 128 CRFYKHNANFCYKLPDNVTFEEGALIEP-----------------LSVGIH-----ACRR 165
Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 256
           A V +G+ V++ G G IGL     A+  GA +++  D+ + +    K  G    +   N 
Sbjct: 166 AGVTLGNKVLVCGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILEISNE 225
Query: 257 GDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 313
             + I   +  +     +   EC G+ + +Q        G G  +++G+   GS+  ++S
Sbjct: 226 SPEEIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSG-GTLVLVGL---GSE--MTS 279
Query: 314 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 373
             ++H+    +  + G  +  +  P+ +     K + +   VTH    E+   AF+   K
Sbjct: 280 VPLVHAATREV-DIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPLEKALEAFETSKK 338
Query: 374 GKCLRCVI 381
           G  L+ +I
Sbjct: 339 GLGLKVMI 346

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 144/378 (38%), Gaps = 46/378 (12%)
Query: 16  QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PR 72
           + +A + T P     + EV V  P   EV ++++ TS+C +D+  ++  ++       P+
Sbjct: 4   KMQAIMKTKPAYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQ 63
Query: 73  ILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           I+GHE                            C +C  C+  + ++C            
Sbjct: 64  IMGHEVAGEVVEVGPGVEDLQVGDYISVETHIVCGKCYACKHNRYHVCQ----------- 112
Query: 133 RDQTSRFK-DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
              T  F  D+ G           F+ Y ++   +  K    +PP  A L        +G
Sbjct: 113 --NTKIFGVDMDG----------VFAHYAIVPAKNAWKNPKDMPPEYAAL-----QEPLG 155
Query: 192 AAWRT--ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            A  T  A    G + +I G G +GL     A+  GA  +I  +    + ++ K+ G   
Sbjct: 156 NAVDTVLAGPIAGRSTLITGAGPLGLLGIAVAKASGAYPVIVSEPSEFRRKLAKKVGADY 215
Query: 250 FVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 308
            VN         ++D+TDG G +   E  G    +++       G G+  +LG+      
Sbjct: 216 VVNPFEEDPVKFVMDITDGAGVEVFLEFSGAPKALEQGLKAVTPG-GRVSLLGLFPREVT 274
Query: 309 LSLSS---FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEI 364
           +  ++   F+ L    I    L+      S +          +L LD  +TH+ K F++ 
Sbjct: 275 IDFNNLIIFKALEVHGITGRHLWETWYTVSSL------IQSGKLNLDPIITHKYKGFDKF 328
Query: 365 NSAFDLLIKGKCLRCVIW 382
             AF+L+  GK  + V +
Sbjct: 329 EEAFELMRAGKTGKVVFF 346

>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In Complex With Cacodylate Length = 360

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 16/229 (6%)
Query: 154 SSFSEYTVLDIAHVVKVDPT-------VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVV 206
           S+F +    ++ HV + D         + P  A +LS  V+TG   A   AN+++G TV 
Sbjct: 113 SNFKDGVFSEVFHVNEADANLALLPRDIKPEDAVMLSDMVTTGFHGA-ELANIKLGDTVC 171
Query: 207 IFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMT 266
           + G+G +GL    GA   GA RI  V       +I   +G T+ +N KN      I+  T
Sbjct: 172 VIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKAT 231
Query: 267 DG-GADYCFECVGLASLVQEAYACCRKG--WGKTIVLGVDQPGSQLSLSSFEVLHSGKIL 323
           DG G D      G      +A    + G   G    LG +     +  S + V    K +
Sbjct: 232 DGKGVDKVVIAGGXVHTFAQAVKMIKPGSDIGNVNYLG-EGDNIDIPRSEWGVGMGHKHI 290
Query: 324 MGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 372
            G L  G + +  +  L       +L+  K +TH  +FE +    D L+
Sbjct: 291 HGGLTPGGRVR--MEKLASLISTGKLDTSKLITH--RFEGLEKVEDALM 335

>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By E. Histolytica Adh Length = 352

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 103/238 (43%), Gaps = 15/238 (6%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
           N+++G TV + G+G +GL    GA   GA RI  V       +I   +G T+ +N KN  
Sbjct: 163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGD 222
Query: 258 DKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKG--WGKTIVLGVDQPGSQLSLSSF 314
               I+  TDG G D      G      +A    + G   G    LG +     +  S +
Sbjct: 223 IVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLG-EGDNIDIPRSEW 281
Query: 315 EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 371
            V    K + G L  G + + +  I L  Y  K ++  K VTH  + F+ I  AF L+
Sbjct: 282 GVGMGHKHIHGGLCPGGRLRMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAFMLM 337

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 155/396 (39%), Gaps = 54/396 (13%)
Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPN---SHEVRVRIICTSLCHSD 57
           M IE+  +++ G   + +AA      +PL I++V  D P      +V VRI    +CH+D
Sbjct: 1   MRIEQDFSQSLGVE-RLKAARLHEYNKPLRIEDV--DYPRLEGRFDVIVRIAGAGVCHTD 57
Query: 58  VTF----WKMKDFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCR 113
           +      W     P   P  LGHE +                   I H       C+ CR
Sbjct: 58  LHLVQGMWHELLQPK-LPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACR 116
Query: 114 SKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173
           + +   C    F   P +  D                     F+E+       V+K+   
Sbjct: 117 AGEDMHCENLEF---PGLNID-------------------GGFAEFMRTSHRSVIKLPKD 154
Query: 174 VPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRI 229
           +   +    A L   G++           +  G+ V I G+G +G    +  ++     +
Sbjct: 155 ISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATV 214
Query: 230 IGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEA-Y 287
           I +DV  EK ++ +R G    V+++    K  ++++T G G +   + VG  + V    Y
Sbjct: 215 IALDVKEEKLKLAERLGADHVVDARRDPVKQ-VMELTRGRGVNVAMDFVGSQATVDYTPY 273
Query: 288 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG-LKAKSDIPILLKRYMD 346
              R   G+ I++G    G +L   +  V+ S     GSL G  ++    + + L+  + 
Sbjct: 274 LLGR--MGRLIIVGY---GGELRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGKVR 328
Query: 347 KELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI 381
            E+++        K +EIN   + L KG+ L R V+
Sbjct: 329 VEVDIH-------KLDEINDVLERLEKGEVLGRAVL 357

>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa Entamoeba Histolytica Length = 360

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 16/229 (6%)
Query: 154 SSFSEYTVLDIAHVVKVDPT-------VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVV 206
           S+F +    ++ HV + D         + P  A +LS  V+TG   A   AN+++G TV 
Sbjct: 113 SNFKDGVFSEVFHVNEADANLALLPRDIKPEDAVMLSDMVTTGFHGA-ELANIKLGDTVC 171
Query: 207 IFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMT 266
           + G+G +GL    GA   GA RI  V       +I   +G T+ +N KN      I+  T
Sbjct: 172 VIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKAT 231
Query: 267 DG-GADYCFECVGLASLVQEAYACCRKG--WGKTIVLGVDQPGSQLSLSSFEVLHSGKIL 323
           DG G D      G      +A    + G   G    LG +     +  S + V    K +
Sbjct: 232 DGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLG-EGDNIPIPRSEWGVGMGHKHI 290
Query: 324 MGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 372
            G L  G + +  +  L       +L+  K +TH  +FE +    D L+
Sbjct: 291 HGGLTPGGRVR--MEKLASLISTGKLDTSKLITH--RFEGLEKVEDALM 335

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 128/327 (39%), Gaps = 39/327 (11%)
Query: 53  LCHSDVTFWKMKDFPAVFPRILGHEAIXXXXXXXXXXXXXXX-XXXXIPHFLADCTECVG 111
           +CH+D+      DF      +LGHE I                    +  F   C  C  
Sbjct: 38  VCHTDLHV-AAGDFGNKAGTVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEY 96
Query: 112 CRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171
           C S     C            R+  +    + G      + V+ ++          VKV 
Sbjct: 97  CVSGNETFC------------REVKNAGYSVDGGMAEEAIVVADYA----------VKVP 134
Query: 172 PTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRI 229
             + P  A  ++C GV+T    A + + V+ G   VIFG G +G LA+     + GA ++
Sbjct: 135 DGLDPIEASSITCAGVTTY--KAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGA-KV 191
Query: 230 IGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYA 288
           I VD+  +K  + K+ G    +NS +      I  +T G G      C  +A +  E   
Sbjct: 192 IAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVC-AVARIAFEQAV 250
Query: 289 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 348
              K  GK + + V  P ++++LS   V+  G  + GSL G    + D+    +   + +
Sbjct: 251 ASLKPMGKMVAVAV--PNTEMTLSVPTVVFDGVEVAGSLVG---TRLDLAEAFQFGAEGK 305
Query: 349 LELDKFVTHEMKFEEINSAFDLLIKGK 375
           +   K +    K EEIN   D +  GK
Sbjct: 306 V---KPIVATRKLEEINDIIDEMKAGK 329

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 138/368 (37%), Gaps = 39/368 (10%)
Query: 21  IATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHE 77
           +   PG+ L ++   +  P  +EV +R+    +C SDV +W   ++ +F    P +LGHE
Sbjct: 12  VVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHE 70
Query: 78  AIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD-QT 136
           A                         A       C+  + NL  +  F  +P  P D   
Sbjct: 71  ASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATP--PDDGNL 128
Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
            RF        +      +F E  +++                  LS G+      A R 
Sbjct: 129 CRFYKHNAAFCYKLPDNVTFEEGALIEP-----------------LSVGIH-----ACRR 166
Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 256
             V +G  V++ G G IG+     A+  GA +++  D+ + +    K  G    +     
Sbjct: 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKE 226
Query: 257 GDKSIIIDMTDG---GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 313
             + I   +        +   EC G  + +Q      R G G  +++G+   GS+  +++
Sbjct: 227 SPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGL---GSE--MTT 280
Query: 314 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 373
             +LH+  I    + G  +  +  P+ +     K + +   VTH    E+   AF+   K
Sbjct: 281 VPLLHAA-IREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKK 339
Query: 374 GKCLRCVI 381
           G  L+ ++
Sbjct: 340 GLGLKIML 347

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 128/327 (39%), Gaps = 39/327 (11%)
Query: 53  LCHSDVTFWKMKDFPAVFPRILGHEAIXXXXXXXXXXXXXXX-XXXXIPHFLADCTECVG 111
           +CH+D+      D+      +LGHE I                    +  F   C  C  
Sbjct: 38  VCHTDLHV-AAGDYGNKAGTVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEY 96
Query: 112 CRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171
           C S     C            R+  +    + G      + V+ ++          VKV 
Sbjct: 97  CVSGNETFC------------REVKNAGYSVDGGMAEEAIVVADYA----------VKVP 134
Query: 172 PTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRI 229
             + P  A  ++C GV+T    A + + V+ G   VIFG G +G LA+     + GA ++
Sbjct: 135 DGLDPIEASSITCAGVTTY--KAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGA-KV 191
Query: 230 IGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYA 288
           I VD+  +K  + K+ G    +NS +      I  +T G G      C  +A +  E   
Sbjct: 192 IAVDINQDKLNLAKKIGADVIINSGDVNPVDEIKKITGGLGVQSAIVC-AVARIAFEQAV 250
Query: 289 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 348
              K  GK + + +  P ++++LS   V+  G  + GSL G    + D+    +   + +
Sbjct: 251 ASLKPMGKMVAVAL--PNTEMTLSVPTVVFDGVEVAGSLVG---TRLDLAEAFQFGAEGK 305
Query: 349 LELDKFVTHEMKFEEINSAFDLLIKGK 375
           +   K +    K EEIN   D +  GK
Sbjct: 306 V---KPIVATRKLEEINDIIDEMKAGK 329

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 133/368 (36%), Gaps = 51/368 (13%)
Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIXXXXXXXXX 88
           L I E  +  P++ EVRV++    +C SD   ++  +  A +PR++GHE           
Sbjct: 32  LSIIEREIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEG 91
Query: 89  XXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH 148
                         +  C  C  C   K N+C+                    L    +H
Sbjct: 92  VESARVGERVAVDPVVSCGHCYPCSIGKPNVCTT-------------------LAVLGVH 132
Query: 149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS--CGVSTGVGAAWRTANVEVGSTVV 206
              +   FSEY V+   +  K+   V    A ++      +   G    T N     TV+
Sbjct: 133 ---ADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTEN----DTVL 185
Query: 207 IFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDM 265
           ++G G IGL + +  + +     +I  D I E+ E  K  G    +N+            
Sbjct: 186 VYGAGPIGLTIVQVLKGVYNVKNVIVADRIDERLEKAKESGADWAINNSQ---------- 235
Query: 266 TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG 325
           T  G  +  + +    ++    A C     K  V  +  P +++ L  F    S  I  G
Sbjct: 236 TPLGESFAEKGIKPTLIID---AACHPSILKEAVT-LASPAARIVLMGFSSEPSEVIQQG 291
Query: 326 ------SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL--LIKGKCL 377
                 S+F      +  P+++       ++ +K +TH   F+ +  A  L  L +  C 
Sbjct: 292 ITGKELSIFSSRLNANKFPVVIDWLSKGLIKPEKLITHTFDFQHVADAISLFELDQKHCC 351
Query: 378 RCVIWMGE 385
           + ++   E
Sbjct: 352 KVLLTFSE 359

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/365 (20%), Positives = 133/365 (36%), Gaps = 39/365 (10%)
Query: 21  IATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHE 77
           +   PG+ L ++   +  P  +EV +R     +C SDV +W   ++ +F    P +LGHE
Sbjct: 12  VVHGPGD-LRLENYPIPEPGPNEVLLRXHSVGICGSDVHYWEYGRIGNFIVKKPXVLGHE 70
Query: 78  AIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD-QT 136
           A                         A       C+  + NL  +  F  +P  P D   
Sbjct: 71  ASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKXGRYNLSPSIFFCATP--PDDGNL 128
Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
            RF        +      +F E  +++                  LS G+      A R 
Sbjct: 129 CRFYKHNAAFCYKLPDNVTFEEGALIEP-----------------LSVGIH-----ACRR 166
Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 256
             V +G  V++ G G IG      A+  GA +++  D+ + +    K  G    +     
Sbjct: 167 GGVTLGHKVLVCGAGPIGXVTLLVAKAXGAAQVVVTDLSATRLSKAKEIGADLVLQISKE 226
Query: 257 GDKSIIIDMTDG---GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 313
             + I   +        +   EC G  + +Q      R G G  +++G+   GS+ +  +
Sbjct: 227 SPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGL---GSEXT--T 280
Query: 314 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 373
             +LH+  I    + G  +  +  P+ +     K + +   VTH    E+   AF+   K
Sbjct: 281 VPLLHAA-IREVDIKGVFRYCNTWPVAISXLASKSVNVKPLVTHRFPLEKALEAFETFKK 339
Query: 374 GKCLR 378
           G  L+
Sbjct: 340 GLGLK 344

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 123/357 (34%), Gaps = 60/357 (16%)
Query: 30  VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE--AIXXXXXXXX 87
           V + VI +  +  EVRV+I  + LC SD+     K+    +P  LGHE            
Sbjct: 14  VAESVIPEIKHQDEVRVKIASSGLCGSDLPRI-FKNGAHYYPITLGHEFSGYIDAVGSGV 72
Query: 88  XXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI 147
                      +P  L  C  C  C     + C+ + F  S    RD             
Sbjct: 73  DDLHPGDAVACVP--LLPCFTCPECLKGFYSQCAKYDFIGSR---RD------------- 114
Query: 148 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI 207
                   F+EY V+   +V  +   +P      +   ++ G+ A       E    V+I
Sbjct: 115 ------GGFAEYIVVKRKNVFALPTDMPIEDGAFIEP-ITVGLHAFHLAQGCE-NKNVII 166
Query: 208 FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTD 267
            G G+IGL   + A   GA  +  +D+ SEK  + K FG  +  NS          +M+ 
Sbjct: 167 IGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSS---------EMSA 217
Query: 268 GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL 327
                    +    L+ E       G  +T+ L V+  G    L+    LH    L  + 
Sbjct: 218 PQMQSVLRELRFNQLILET-----AGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSAT 272
Query: 328 FGGLKAK-----------------SDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
           FG +  K                  +     +   +++L L+  + H   FE    A
Sbjct: 273 FGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQA 329

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 143/366 (39%), Gaps = 45/366 (12%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE                       + L     C  CR  + +LC +       
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPLQGEGNCYYCRIGEEHLCDS------- 114
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
             PR     F     E    +V V  +     L   + V+  P         L+C G++T
Sbjct: 115 --PRWLGINFDGAYAE----YVIVPHYKYMYKLRRLNAVEAAP---------LTCSGITT 159
Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
               A R A+++   T+++ G G     +AV     + GAT IIGVDV  E  E  KR G
Sbjct: 160 --YRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGAT-IIGVDVREEAVEAAKRAG 216
Query: 247 VTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 305
               +N+      + I  +T+  G D   + +  +      Y       GK +++G+   
Sbjct: 217 ADYVINASMQDPLAEIRRITESKGVDAVID-LNYSEKTLSVYPKALAKQGKYVMVGLF-- 273
Query: 306 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 365
           G+ L   +  +  S    +GSL G    +SD   +++  + +  ++   +T  MK EE N
Sbjct: 274 GADLHYHAPLITLSEIQFVGSLVGN---QSDFLGIMR--LAEAGKVKPMITKTMKLEEAN 328
Query: 366 SAFDLL 371
            A D L
Sbjct: 329 EAIDNL 334

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 140/364 (38%), Gaps = 46/364 (12%)
Query: 18  RAAIATAPGEPLVID--EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRIL 74
           RA +  A G P V++  ++ V  P   EVRVR+   +L H DV   K    P +  P +L
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61
Query: 75  GHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +                     + +    C  C  C + + NLC           PR 
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLC-----------PRY 110
Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
           Q      + GE  H      +++EY VL  A++       P N +   +  +      AW
Sbjct: 111 Q------ILGEHRH-----GTYAEYVVLPEANLA----PKPKNLSFEEAAAIPLTFLTAW 155
Query: 195 RTA----NVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           +       V  G  V++   GS + +A  + A+L GA R+I      +K    K  G  E
Sbjct: 156 QMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADE 214
Query: 250 FVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 308
            VN  +      +  +T G GAD   +  G  +L  E         G+  + G    G +
Sbjct: 215 TVNYTHPDWPKEVRRLTGGKGADKVVDHTG--ALYFEGVIKATANGGRIAIAGASS-GYE 271
Query: 309 LSLSSFEVLHSGKILMGSLFGGLKAKSDI-PILLKRYMDKELELDKFVTHEMKFEEINSA 367
            +L    V +    ++GS    + +KS + PIL  R+++ E +L   V   +  E     
Sbjct: 272 GTLPFAHVFYRQLSILGST---MASKSRLFPIL--RFVE-EGKLKPVVGQVLPLEAAAEG 325
Query: 368 FDLL 371
             LL
Sbjct: 326 HRLL 329

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 77/378 (20%), Positives = 133/378 (35%), Gaps = 54/378 (14%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA---VFPRIL 74
           RA    AP E L + +  V  P   E+ VR+   S+C +D+  WK   +       P + 
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61
Query: 75  GHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGC---RSKKGNLCSAFPFKISPWM 131
           GHE                          +   E VG    R + G+  S     +    
Sbjct: 62  GHE-------------------------FSGVVEAVGPGVRRPQVGDHVSLESHIVCHAC 96
Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
           P  +T  +       I        F+EY V+  A    V+P   P     +       V 
Sbjct: 97  PACRTGNYHVCLNTQILGVDRDGGFAEYVVVP-AENAWVNPKDLPFEVAAILEPFGNAVH 155
Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
             +  + V  G +V+I G G IGL  A   R  GA  I+  D    +    + +     V
Sbjct: 156 TVYAGSGVS-GKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLV 213
Query: 252 NSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 311
           N        ++  +T  G +   E  G  + + +       G G+  +LG+     +  L
Sbjct: 214 NPLEEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPSDPIRFDL 272
Query: 312 SSFEVLHSGKILMGSLFG-GLKAKSDIPILLKRYMD-------KELELDKFVTHEMKFEE 363
                  +G+++M  +   G+  +     L + +M          ++L   +TH +    
Sbjct: 273 -------AGELVMRGITAFGIAGRR----LWQTWMQGTALVYSGRVDLSPLLTHRLPLSR 321
Query: 364 INSAFDLLIKGKCLRCVI 381
              AF LL  G+ ++ ++
Sbjct: 322 YREAFGLLASGQAVKVIL 339

>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 142/366 (38%), Gaps = 45/366 (12%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE                       +       C  CR  + +LC +       
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDS------- 114
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
             PR     F     E    +V V  +     L   + V+  P         L+C G++T
Sbjct: 115 --PRWLGINFDGAYAE----YVIVPHYKYMYKLRRLNAVEAAP---------LTCSGITT 159
Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
               A R A+++   T+++ G G     +AV     + GAT IIGVDV  E  E  KR G
Sbjct: 160 Y--RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGAT-IIGVDVREEAVEAAKRAG 216
Query: 247 VTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 305
               +N+      + I  +T+  G D   + +  +      Y       GK +++G+   
Sbjct: 217 ADYVINASMQDPLAEIRRITESKGVDAVID-LNYSEKTLSVYPKALAKQGKYVMVGLF-- 273
Query: 306 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 365
           G+ L   +  +  S    +GSL G    +SD   +++  + +  ++   +T  MK EE N
Sbjct: 274 GADLHYHAPLITLSEIQFVGSLVGN---QSDFLGIMR--LAEAGKVKPMITKTMKLEEAN 328
Query: 366 SAFDLL 371
            A D L
Sbjct: 329 EAIDNL 334

>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase Length = 363

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 123/335 (36%), Gaps = 39/335 (11%)
Query: 43  EVRVRIICTSLCHSDVTFWKMKDF-PAVFP--RILGHEAIXXXXXXXXXXXXXXXXXXXI 99
           EV V +  T +C SDV FWK     P +     +LGHE+                     
Sbjct: 42  EVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVA 101
Query: 100 PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEY 159
                 C  C  C + + N C    F  +P +P              +  +V+  +   +
Sbjct: 102 IEPQVICNACEPCLTGRYNGCERVDFLSTPPVPG------------LLRRYVNHPAVWCH 149
Query: 160 TVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAE 219
            + ++++          N A L    V+    A  + A V +G  V+I G G IGL    
Sbjct: 150 KIGNMSY---------ENGAMLEPLSVAL---AGLQRAGVRLGDPVLICGAGPIGLITML 197
Query: 220 GARLCGATRIIGVDVISEKFEIGKRFG---VTEFVNSKNCGDKSIIIDMTDGGAD--YCF 274
            A+  GA  ++  D+   + +  K      VT  V   +  + +  I  + GG +     
Sbjct: 198 CAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVAL 257
Query: 275 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAK 334
           EC G+ S +  A    + G GK  V+GV +   Q+      V          L    +  
Sbjct: 258 ECTGVESSIAAAIWAVKFG-GKVFVIGVGKNEIQIPFMRASVREV------DLQFQYRYC 310
Query: 335 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 369
           +  P  ++   +  ++L + VTH    E+   AF+
Sbjct: 311 NTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFE 345

>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 142/366 (38%), Gaps = 45/366 (12%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE                       +       C  CR  + +LC +       
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDS------- 114
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
             PR     F     E    +V V  +     L   + V+  P         L+C G++T
Sbjct: 115 --PRWLGINFDGAYAE----YVIVPHYKYMYKLRRLNAVEAAP---------LTCSGITT 159
Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
               A R A+++   T+++ G G     +AV     + GAT IIGVDV  E  E  KR G
Sbjct: 160 Y--RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGAT-IIGVDVREEAVEAAKRAG 216
Query: 247 VTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 305
               +N+      + I  +T+  G D   + +  +      Y       GK +++G+   
Sbjct: 217 ADYVINASMQDPLAEIRRITESKGVDAVID-LNNSEKTLSVYPKALAKQGKYVMVGLF-- 273
Query: 306 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 365
           G+ L   +  +  S    +GSL G    +SD   +++  + +  ++   +T  MK EE N
Sbjct: 274 GADLHYHAPLITLSEIQFVGSLVGN---QSDFLGIMR--LAEAGKVKPMITKTMKLEEAN 328
Query: 366 SAFDLL 371
            A D L
Sbjct: 329 EAIDNL 334

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 137/356 (38%), Gaps = 58/356 (16%)
Query: 43  EVRVRIICTSLCHSDV----TFWKMKDFPAVFPRILGHE-AIXXXXXXXXXXXXXXXXXX 97
           +V + I+   +CHSD+    + WK      ++P I GHE A                   
Sbjct: 31  DVLIDILYAGICHSDIHSAYSEWK----EGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVV 86
Query: 98  XIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS 157
            +  F+  C  C  C+  +   C+   F        D    F D           +  +S
Sbjct: 87  GVGCFVNSCKACKPCKEHQEQFCTKVVFT------YDCLDSFHDNEPH-------MGGYS 133
Query: 158 EYTVLDIAHVVKVDPTVPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG-- 214
              V+D  +V+ VD   P  + A LL  G++T   +  + + V  G+ V + G G +G  
Sbjct: 134 NNIVVDENYVISVDKNAPLEKVAPLLCAGITT--YSPLKFSKVTKGTKVGVAGFGGLGSM 191
Query: 215 ---LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGA 270
               AVA GA +    R         K +     GV  F  + K C ++           
Sbjct: 192 AVKYAVAMGAEVSVFAR------NEHKKQDALSMGVKHFYTDPKQCKEE----------L 235
Query: 271 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSG-KILMGSLFG 329
           D+    +     +++ Y       G   ++G+        LS F+ +H G + + GSL G
Sbjct: 236 DFIISTIPTHYDLKD-YLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIG 294
Query: 330 GLKAKSD-IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM 383
           G+K   + +   +K  +  E++L       +  ++I++A+  L  GK   R VI M
Sbjct: 295 GIKETQEMVDFSIKHNIYPEIDL-------ILGKDIDTAYHNLTHGKAKFRYVIDM 343

>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/369 (20%), Positives = 137/369 (37%), Gaps = 34/369 (9%)
Query: 9   KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA 68
           K AG  ++ +A  A +  +PL   ++    P  ++V++ I    +CHSD+   + +    
Sbjct: 17  KKAG--LKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGT 74
Query: 69  VFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLAD-CTECVGCRSKKGNLCSAFPFKI 127
           V+P + GHE +                       + D C  C  C     N C       
Sbjct: 75  VYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCD------ 128
Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
              M     S   D  G T+  +       E  VL I H  +    V P    LL  G++
Sbjct: 129 --HMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAP----LLCAGIT 182
Query: 188 T-GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           T      W+    +    V I GLG +G+ +A          ++       K E  K  G
Sbjct: 183 TYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAM----GAHVVAFTTSEAKREAAKALG 238
Query: 247 VTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
             E VNS+N  + +  +       D+    V     + +     ++    T+V     P 
Sbjct: 239 ADEVVNSRNADEMAAHLK----SFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATP- 293
Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRY-MDKELELDKFVTHEMKFEEIN 365
              S   F ++   + + GS+ GG+    ++      + +  ++E+       ++ ++IN
Sbjct: 294 -HKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEM-------IRADQIN 345
Query: 366 SAFDLLIKG 374
            A++ +++G
Sbjct: 346 EAYERMLRG 354

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 87/227 (38%), Gaps = 10/227 (4%)
Query: 156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 215
            SEY VL     V    ++    A  L C   T   A     ++  G  VV+ G G + L
Sbjct: 144 LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVAL 203
Query: 216 AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMT-DGGADYCF 274
              + A+  GA  I+      EK +     G    +N         +  +T D GAD+  
Sbjct: 204 FGLQIAKATGAEVIV-TSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHIL 262
Query: 275 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAK 334
           E  G A L Q   A      G+  V+GV + G ++S     +L    ++ G   G  +A 
Sbjct: 263 EIAGGAGLGQSLKAVAPD--GRISVIGVLE-GFEVSGPVGPLLLKSPVVQGISVGHRRAL 319
Query: 335 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 381
            D+   + R     L L   +    KF E+  A   L +G   + VI
Sbjct: 320 EDLVGAVDR-----LGLKPVIDXRYKFTEVPEALAHLDRGPFGKVVI 361

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	385
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	0.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	0.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	0.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	0.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	0.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-154
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-133
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	3e-78
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	7e-66
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-64
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	7e-61
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	1e-59
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	2e-59
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	2e-59
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	4e-57
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	5e-54
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	1e-53
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	4e-51
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	8e-50
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	9e-50
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	2e-49
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	9e-49
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	2e-44
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	2e-44
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	2e-42
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	6e-39
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	1e-38
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	7e-26
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	1e-24
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	2e-24
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	4e-24
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-22
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	3e-22
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	6e-22
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	9e-21
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	1e-20
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	3e-20
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	4e-18
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	9e-18
3gms_A	340	Putative NADPH:quinone reductase; structural genom	5e-16
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	4e-13
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	6e-13
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	7e-13
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	8e-13
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	2e-12
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	3e-12
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	8e-12
4eye_A	342	Probable oxidoreductase; structural genomics, niai	9e-12
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	6e-11
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	6e-11
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	5e-08
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	2e-07
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	2e-07
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	4e-07
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	1e-04
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	2e-06
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	1e-05
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-04
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	3e-04
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	4e-04

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  547 bits (1412), Expect = 0.0
 Identities = 166/376 (44%), Positives = 239/376 (63%), Gaps = 6/376 (1%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGH   G+VESVGE V  +  GD VIP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 121 LMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179

Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239

Query: 251 VNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
           +N ++   K I   +I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G 
Sbjct: 240 INPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGE 298

Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
           +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN A
Sbjct: 299 EIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKA 357

Query: 368 FDLLIKGKCLRCVIWM 383
           F+L+  GK +R V+ +
Sbjct: 358 FELMHSGKSIRTVVKI 373

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  531 bits (1369), Expect = 0.0
 Identities = 153/375 (40%), Positives = 222/375 (59%), Gaps = 7/375 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL-VTP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA G+VES+GE V  V  GD VIP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239

Query: 250 FVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
            VN ++   K I   + +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298

Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 366
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPMLLL-SGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357

Query: 367 AFDLLIKGKCLRCVI 381
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  530 bits (1367), Expect = 0.0
 Identities = 156/376 (41%), Positives = 231/376 (61%), Gaps = 5/376 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AA+A    +PLVI+E+ VD P+++E+R++II T +CH+D+           
Sbjct: 2   TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE  G+VESVG  V     G+ VIP F++ C EC  C+S K N C       SP
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+ P +  CLL CGVSTG
Sbjct: 122 DVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTG 180

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+  +KFE  K FG T+
Sbjct: 181 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 240

Query: 250 FVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
           FVN  +  +    ++  MT+GG D+  ECVG   +++ A   C KGWG ++++G      
Sbjct: 241 FVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWT-DLH 299

Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            ++    +++ +G+   GS+FGG K K  +P ++K Y+DK+++LD+F+TH M  E +N A
Sbjct: 300 DVATRPIQLI-AGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDA 358

Query: 368 FDLLIKGKCLRCVIWM 383
            DL+  GKC+R V+ +
Sbjct: 359 IDLMKHGKCIRTVLSL 374

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  528 bits (1363), Expect = 0.0
 Identities = 153/379 (40%), Positives = 220/379 (58%), Gaps = 13/379 (3%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +C +D+     K   A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKK-KAL 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE  G+VESVG  V     GD VIP F   C  C  C S   NLC        P
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 130 W----MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG
Sbjct: 121 TIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCG 179

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K  
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239

Query: 246 GVTEFVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 302
           G T+ +N +   DK +   I ++T GG DY  +C G A  ++ A  C   GWG   V+G 
Sbjct: 240 GATDCLNPREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA 298

Query: 303 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 362
                ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+ +LD  VTH + FE
Sbjct: 299 --KVDEMTIPTVDVI-LGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFE 355

Query: 363 EINSAFDLLIKGKCLRCVI 381
            IN A DL+ +GK +R ++
Sbjct: 356 SINDAIDLMKEGKSIRTIL 374

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  524 bits (1352), Expect = 0.0
 Identities = 151/375 (40%), Positives = 217/375 (57%), Gaps = 9/375 (2%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I C+AA+A  P +PL ++ + V PP +HEVR++I+ + +C SD +  K    P+ 
Sbjct: 3   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEII-PSK 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA+GVVES+G  V  V  GD VIP F+  C  C  C+S   N C         
Sbjct: 62  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKT 121

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP  P   +CL+ CG +TG
Sbjct: 122 GLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATG 179

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV    +KF      G TE
Sbjct: 180 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE 239

Query: 250 FVNSKNCGDKSI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
            +N K+  DK I   I + T+GG DY  EC G    +  A      G G T+VLG+  P 
Sbjct: 240 CLNPKDY-DKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPN 298

Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 366
            +L L    +L +G+ L GS+FGG K + ++  L+  YM K++ ++  V+ ++  ++IN 
Sbjct: 299 ERLPLDPLLLL-TGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINK 356

Query: 367 AFDLLIKGKCLRCVI 381
           AF+LL  G+ +R ++
Sbjct: 357 AFELLSSGQGVRSIM 371

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  438 bits (1128), Expect = e-154
 Identities = 105/373 (28%), Positives = 173/373 (46%), Gaps = 5/373 (1%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
           +     AA+    G    +  + +  P   EV V+++ T +CH+D+     + +P   P 
Sbjct: 3   ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRD-QKYPVPLPA 61

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           +LGHE  G++E++G NV  +  GD V+  +   C +C  C +     CS F  +      
Sbjct: 62  VLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD 120

Query: 133 RDQTSRFKDLRGET-IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
            +               HF + SSF+ Y +    + VKV   VP      L CG+ TG G
Sbjct: 121 SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAG 180

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
           A      V   S+ V +G G++GL+    A++CGA+ II VD++  + E+ K+ G T  +
Sbjct: 181 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVI 240

Query: 252 NSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 311
           NSK     + I ++TDGG ++  E  G   ++++         GK  V+G  Q G+    
Sbjct: 241 NSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQF 299

Query: 312 SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL 371
              ++L  GK ++G + G    K  IP L++ Y   +   D+ V     F+EIN A    
Sbjct: 300 DVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDS 358

Query: 372 IKGKCLRCVIWMG 384
            KG  L+ +I + 
Sbjct: 359 RKGITLKPIIKIA 371

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  386 bits (993), Expect = e-133
 Identities = 88/382 (23%), Positives = 146/382 (38%), Gaps = 30/382 (7%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
            ++  A +     +PLV  E  +       + V I+   +C SDV  ++ +D     P I
Sbjct: 15  GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPII 74

Query: 74  LGHEAIGVVESVGENVDG-----VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKIS 128
           LGHE  G V  V           +  GD+++ +    C EC  C+  K            
Sbjct: 75  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYG 134

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGVS 187
             + R   S +  LRG           +S + VLD    V+KV      +   +  C  +
Sbjct: 135 --INRG-CSEYPHLRG----------CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGA 181

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           T   A         G TVVI G G +GL     AR  GA  +I +     + ++ +  G 
Sbjct: 182 TAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 241

Query: 248 TEFVNSKNCGDKSI---IIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
              +N +    +     I+D+T G GAD+  E  G +  + E     R+G G   V GV 
Sbjct: 242 DLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVA 300

Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS--DIPILLKRYMDKELELDKFVTHEMKF 361
            P   +       ++   +L  + F G+           +         L K +TH +  
Sbjct: 301 VPQDPVPFK----VYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPL 356

Query: 362 EEINSAFDLLIKGKCLRCVIWM 383
           +E N A +L+   + L+ +++ 
Sbjct: 357 KEANKALELMESREALKVILYP 378

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  244 bits (624), Expect = 3e-78
 Identities = 84/369 (22%), Positives = 142/369 (38%), Gaps = 32/369 (8%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDFPAVFPRILG 75
           +A   T  G   V+ ++    P   E+ +++    LCHSD+    M    +    P  LG
Sbjct: 2   KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE +G V  +GE V G   GD V  +    C  C  C   + N C+              
Sbjct: 62  HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRA------------ 109

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAW 194
                   G T     S  S +EY ++D A  +     + P  A  L+  G++     + 
Sbjct: 110 -----ADLGITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISR 164

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
               +  GST V+ G+G +G    +  R   A R+I VD+  ++  + +  G    V S 
Sbjct: 165 VLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSG 224

Query: 255 NCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 313
             G    I ++T G GA   F+ VG  S +  A        G   V+G+       +   
Sbjct: 225 A-GAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGI--HAGAHAKVG 280

Query: 314 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 373
           F ++  G  ++   +G      ++  ++       L++    T     +E  +A+  L +
Sbjct: 281 FFMIPFGASVVTPYWGTRS---ELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLRE 334

Query: 374 GKCL-RCVI 381
           G    R V+
Sbjct: 335 GSIRGRGVV 343

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  212 bits (542), Expect = 7e-66
 Identities = 78/375 (20%), Positives = 143/375 (38%), Gaps = 50/375 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A    + G  + +  V +  P   ++ V++    +C +D       +FP+  P  LGHE
Sbjct: 25  KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLH-GEFPSTPPVTLGHE 82

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             G+V   G  V  +  G      P+    C  C  C++ + NLC               
Sbjct: 83  FCGIVVEAGSAVRDIAPGARITGDPNIS--CGRCPQCQAGRVNLC--------------- 125

Query: 136 TSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTG 189
               ++LR       + +     F+EY ++      ++  T+ P        L+C +   
Sbjct: 126 ----RNLR------AIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL--- 172

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
                  + ++ GSTV I G G IGL   + ARL GAT +I     + K  + +  G T 
Sbjct: 173 --HGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA 230

Query: 250 FVNSKNCGDKSIIIDMTDG---GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
            V+         I         G D   EC G+A  V+++    + G G  ++LGV   G
Sbjct: 231 TVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQG 289

Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 366
            ++ +  F++L     ++GS F                    +E+D+ ++  +  +E   
Sbjct: 290 EKVEIEPFDILFRELRVLGS-FI---NPFVHRRAADLVATGAIEIDRMISRRISLDEAPD 345

Query: 367 AFDLLIKGKCLRCVI 381
                     ++ ++
Sbjct: 346 VISNPAAAGEVKVLV 360

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  209 bits (533), Expect = 1e-64
 Identities = 85/374 (22%), Positives = 151/374 (40%), Gaps = 43/374 (11%)

Query: 18  RAAIATAPGEPLVIDEVIV-DPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRI 73
           +AA      +PL I++V         +V VRI    +CH+D+   +    +      P  
Sbjct: 17  KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 76

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           LGHE +G +E V E V+G+ +GD VI H       C+ CR+ +   C    F        
Sbjct: 77  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFP------- 129

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR---ACLLSCGVSTGV 190
                     G  I        F+E+       V+K+   +   +      L+    T  
Sbjct: 130 ----------GLNID-----GGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAY 174

Query: 191 GAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            A  +    +  G+ V I G+G +G    +  ++     +I +DV  EK ++ +R G   
Sbjct: 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH 234

Query: 250 FVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 308
            V+++       ++++T G G +   + VG  + V        +  G+ I++G    G +
Sbjct: 235 VVDARR-DPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGY---GGE 289

Query: 309 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF 368
           L   +  V+ S     GSL G      ++  L+   +  ++ +        K +EIN   
Sbjct: 290 LRFPTIRVISSEVSFEGSLVGNYV---ELHELVTLALQGKVRV---EVDIHKLDEINDVL 343

Query: 369 DLLIKGKCL-RCVI 381
           + L KG+ L R V+
Sbjct: 344 ERLEKGEVLGRAVL 357

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  198 bits (507), Expect = 7e-61
 Identities = 79/368 (21%), Positives = 140/368 (38%), Gaps = 42/368 (11%)

Query: 18  RAAIATAPGEPLVIDEV-IVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           ++ +    G  + + E  I +  +  EVRV+I  + LC SD+     K+    +P  LGH
Sbjct: 2   KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIF-KNGAHYYPITLGH 59

Query: 77  EAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           E  G +++VG  VD +  GD    +P     C  C  C     + C+ + F  S    RD
Sbjct: 60  EFSGYIDAVGSGVDDLHPGDAVACVPLLP--CFTCPECLKGFYSQCAKYDFIGSR---RD 114

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVG 191
                    G           F+EY V+   +V  +   +P         ++ G+     
Sbjct: 115 ---------G----------GFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL----- 150

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
            A+  A       V+I G G+IGL   + A   GA  +  +D+ SEK  + K FG  +  
Sbjct: 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTF 210

Query: 252 NSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS 310
           NS       +   + +        E  G+   V+ A         +  ++G       L+
Sbjct: 211 NSSEMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLT 269

Query: 311 LSSFE-VLHSGKILMGSL--FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 367
            ++F  +L     ++GS   +       +     +   +++L L+  + H   FE    A
Sbjct: 270 SATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQA 329

Query: 368 FDLLIKGK 375
              + +  
Sbjct: 330 VRDIARNA 337

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  195 bits (499), Expect = 1e-59
 Identities = 88/372 (23%), Positives = 152/372 (40%), Gaps = 42/372 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--MKDFPAVFPRILG 75
           +AA+     EPL I++V +  P   EV +RI    +C +D+  WK          P ILG
Sbjct: 5   KAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILG 64

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE  G +  VGE +  V +GD V+ +       C  CR  K N+C               
Sbjct: 65  HENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKN------------- 110

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA--- 192
               + + G+T +       FSEY ++  +  +    ++ P  A  L+   +T +GA   
Sbjct: 111 ----QIIPGQTTN-----GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQ 161

Query: 193 AWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
           A    +      V++ G+G +    +     L     I+G+    +  +     G     
Sbjct: 162 ALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVS 221

Query: 252 NSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS 310
             K+      I  +TDG GA    + VG             +  G  I++G+   G ++S
Sbjct: 222 EMKDAESL--INKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGM--EGKRVS 276

Query: 311 LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 370
           L +F+     K L+GS +G L    D+  +++     +++       ++  ++IN AF  
Sbjct: 277 LEAFDTAVWNKKLLGSNYGSLN---DLEDVVRLSESGKIKP---YIIKVPLDDINKAFTN 330

Query: 371 LIKGKCL-RCVI 381
           L +G+   R VI
Sbjct: 331 LDEGRVDGRQVI 342

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  195 bits (498), Expect = 2e-59
 Identities = 92/378 (24%), Positives = 157/378 (41%), Gaps = 48/378 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE  G +E VG+ V G  +GD+V  +       C  CR  + +LC +  +    
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL--- 118

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                         G          +++EY ++     +     +    A  L+C   T 
Sbjct: 119 --------------GINFD-----GAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITT 159

Query: 190 VGAAWRTANVEVGSTVVIF----GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
             A  R A+++   T+++     GLG++ + +A    + GA  IIGVDV  E  E  KR 
Sbjct: 160 YRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIA--KAVSGA-TIIGVDVREEAVEAAKRA 215

Query: 246 GVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 304
           G    +N+      + I  +T+  G D   +       +        K  GK +++G+  
Sbjct: 216 GADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGL-- 272

Query: 305 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 364
            G+ L   +  +  S    +GSL G    +SD   +++  + +  ++   +T  MK EE 
Sbjct: 273 FGADLHYHAPLITLSEIQFVGSLVG---NQSDFLGIMR--LAEAGKVKPMITKTMKLEEA 327

Query: 365 NSAFDLLIKGKCL-RCVI 381
           N A D L   K + R V+
Sbjct: 328 NEAIDNLENFKAIGRQVL 345

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  195 bits (497), Expect = 2e-59
 Identities = 81/375 (21%), Positives = 133/375 (35%), Gaps = 48/375 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           RA    AP E L + +  V  P   E+ VR+   S+C +D+  WK           P + 
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVI--PHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE  GVVE+VG  V     GD V    H +  C  C  CR+   ++C            
Sbjct: 62  GHEFSGVVEAVGPGVRRPQVGDHVSLESHIV--CHACPACRTGNYHVC------------ 107

Query: 133 RDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGV 186
                   + +       + V     F+EY V+   +       +P   A +       V
Sbjct: 108 -------LNTQ------ILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAV 154

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
                      +   G +V+I G G IGL  A   R  GA  I+  D    +    + + 
Sbjct: 155 -----HTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYA 209

Query: 247 VTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
               VN        ++  +T  G +   E  G  + + +       G G+  +LG+    
Sbjct: 210 -DRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPSDP 267

Query: 307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 366
            +  L+  E++  G    G    G +                ++L   +TH +       
Sbjct: 268 IRFDLAG-ELVMRGITAFGIA--GRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYRE 324

Query: 367 AFDLLIKGKCLRCVI 381
           AF LL  G+ ++ ++
Sbjct: 325 AFGLLASGQAVKVIL 339

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  189 bits (482), Expect = 4e-57
 Identities = 86/377 (22%), Positives = 150/377 (39%), Gaps = 50/377 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRIL 74
            A + T PG    + EV V  P   EV ++++ TS+C +D+  ++  ++       P+I+
Sbjct: 6   VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIM 65

Query: 75  GHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE  G V  +G  V+G+  GD   V  H +  C +C  CR  + ++C            
Sbjct: 66  GHEVAGEVVEIGPGVEGIEVGDYVSVETHIV--CGKCYACRRGQYHVCQN---------- 113

Query: 133 RDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGV 186
                               V     F+EY V+   ++ K   ++PP  A L   L   V
Sbjct: 114 ---------------TKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAV 158

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
                          G +V+I G G +GL     A+  GA  +I  +    + E+ K+ G
Sbjct: 159 D----TVLAG--PISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVG 212

Query: 247 VTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 305
               +N         ++D+TDG G D   E  G    +++         G+  +LG+   
Sbjct: 213 ADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPG 271

Query: 306 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEI 364
              +  ++  ++     + G    G         + +     +L LD  +TH+ K F++ 
Sbjct: 272 KVTIDFNNL-IIFKALTIYGIT--GRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKY 328

Query: 365 NSAFDLLIKGKCLRCVI 381
             AF+L+  GK  + V 
Sbjct: 329 EEAFELMRAGKTGKVVF 345

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  181 bits (462), Expect = 5e-54
 Identities = 80/381 (20%), Positives = 139/381 (36%), Gaps = 45/381 (11%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFP 67
           A       + +   PG+ L ++   +  P  +EV +R+    +C SDV +W+   + +F 
Sbjct: 2   AAAKPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFI 60

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
              P +LGHEA G VE VG +V  +  GD V     A       C+  + NL  +  F  
Sbjct: 61  VKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCA 120

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSC 184
           +P  P D                        +   + A   K+   V      L   LS 
Sbjct: 121 TP--PDDGN-------------------LCRFYKHNAAFCYKLPDNVTFEEGALIEPLSV 159

Query: 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
           G+      A R   V +G  V++ G G IG+     A+  GA +++  D+ + +    K 
Sbjct: 160 GI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE 214

Query: 245 FGVTEFVNSKNCGDKSIIIDMTD---GGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 301
            G    +       + I   +        +   EC G  + +Q      R G G  +++G
Sbjct: 215 IGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVG 273

Query: 302 VDQPGSQLSLSSFEVLHSGKILMGSL-FGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 360
           +       ++           + G   +         P+ +     K + +   VTH   
Sbjct: 274 L--GSEMTTVPLLHAAIREVDIKGVFRYCN-----TWPVAISMLASKSVNVKPLVTHRFP 326

Query: 361 FEEINSAFDLLIKGKCLRCVI 381
            E+   AF+   KG  L+ ++
Sbjct: 327 LEKALEAFETFKKGLGLKIML 347

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  181 bits (461), Expect = 1e-53
 Identities = 74/409 (18%), Positives = 126/409 (30%), Gaps = 66/409 (16%)

Query: 5   KPSNKTAGKPIQCRAAIATAPGEPLVIDEVIV-DPPNSHEVRVRIICTSLCHSDVTFWK- 62
           K   K     +    +      E + ++EV         E+ +++    +C SDV   + 
Sbjct: 19  KLGPKDIEGKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQT 77

Query: 63  ------MKDFPAVFPRILGHEAIGVVESVGENV------DGVVEGD--VVIPHFLADCTE 108
                 +      FP  LGHE  GVV   G              G+           C  
Sbjct: 78  DEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLW--CGH 135

Query: 109 CVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIA 165
           C  C     N C                            + +  +   +F+EY  +D  
Sbjct: 136 CRPCAEGFPNHCEN-------------------------LNELGFNVDGAFAEYVKVDAK 170

Query: 166 HVVKV-------DPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 215
           +   +       +         L    S   +       R   +  G  VVI G G IGL
Sbjct: 171 YAWSLRELEGVYEGDRLFLAGSLVEPTSVAYN---AVIVRGGGIRPGDNVVILGGGPIGL 227

Query: 216 AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCF 274
           A     +  GA+++I  +    +  + K  G    ++         ++D T+G GA    
Sbjct: 228 AAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFL 287

Query: 275 ECVGLASLVQEA--YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 332
           E  G+  LV         R       V  V +  +++ L+          ++GS   G  
Sbjct: 288 EATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQ--GHS 345

Query: 333 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 381
                P ++   M   +++ K ++  +  EEI      L   K L  V 
Sbjct: 346 GHGTFPRVI-SLMASGMDMTKIISKTVSMEEIPEYIKRLQTDKSLVKVT 393

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  173 bits (441), Expect = 4e-51
 Identities = 87/370 (23%), Positives = 141/370 (38%), Gaps = 48/370 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
            +A+     + L +++  +  P   EV +++    +C SDV +++   + DF    P ++
Sbjct: 6   LSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVI 64

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHEA G V  VG+NV  + +GD V       C  C  C+  K NLC    F  +P  P D
Sbjct: 65  GHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATP--PDD 122

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVG 191
                                 + Y V       K+   V      L   LS GV     
Sbjct: 123 GN-------------------LARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV----- 158

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--VTE 249
            A R A V++G+TV++ G G IGL     A+  GA  ++       + E+ K  G  VT 
Sbjct: 159 HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADVTL 217

Query: 250 FVNSKNCGDKSIIIDMTDG---GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 306
            V+     + SII  +        +   +C G    +       R G G  +++G+    
Sbjct: 218 VVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGM--GS 274

Query: 307 SQLSLSSFEVLHSGKILMGSL-FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 365
             +++           +     +       D PI L+        + + VTH  K E+  
Sbjct: 275 QMVTVPLVNACAREIDIKSVFRYCN-----DYPIALEMVASGRCNVKQLVTHSFKLEQTV 329

Query: 366 SAFDLLIKGK 375
            AF+   K  
Sbjct: 330 DAFEAARKKA 339

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  170 bits (433), Expect = 8e-50
 Identities = 77/373 (20%), Positives = 128/373 (34%), Gaps = 51/373 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           +  +  +   P +      +     EV V +  T +C SDV FWK   +         +L
Sbjct: 17  QHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVL 76

Query: 75  GHEAIGVVESVGENVDGVVEGD-VVI-PHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE+ G V +V  +V  +  GD V I P  +  C  C  C + + N C    F  +P +P
Sbjct: 77  GHESAGEVIAVHPSVKSIKVGDRVAIEPQVI--CNACEPCLTGRYNGCERVDFLSTPPVP 134

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTG 189
                      G              Y         K+   +      +   LS  +   
Sbjct: 135 -----------G----------LLRRYVNHPAVWCHKI-GNMSYENGAMLEPLSVAL--- 169

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
             A  + A V +G  V+I G G IGL     A+  GA  ++  D+   + +  K      
Sbjct: 170 --AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEV 227

Query: 250 FVNSKNCGDK----SIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 304
             +             I++   G       EC G+ S +  A    + G GK  V+GV  
Sbjct: 228 VTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGV-- 284

Query: 305 PGSQLSLSSFEVLHSGKILMGSL-FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 363
             +++ +           L     +         P  ++   +  ++L + VTH    E+
Sbjct: 285 GKNEIQIPFMRASVREVDLQFQYRYCN-----TWPRAIRLVENGLVDLTRLVTHRFPLED 339

Query: 364 INSAFDLLIKGKC 376
              AF+     K 
Sbjct: 340 ALKAFETASDPKT 352

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  170 bits (432), Expect = 9e-50
 Identities = 83/365 (22%), Positives = 128/365 (35%), Gaps = 42/365 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +     + G+ +   E     P   +  VR +  + C SD+              ILGHE
Sbjct: 2   KGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHE 60

Query: 78  AIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           A+G V  VG  V     GD VV+P  +         +                       
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVVVP-AITPDWRTSEVQRGYHQHSG--------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHV-------VKVDPTVPPNRACLLSCGVSTG 189
                +        V    F E+      HV         +   +P   A ++   ++TG
Sbjct: 105 ----GMLAGWKFSNVKDGVFGEF-----FHVNDADMNLAHLPKEIPLEAAVMIPDMMTTG 155

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
              A   AN+++G TV + G+G +GL    GA   GA RI  V       +I   +G T+
Sbjct: 156 FHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD 214

Query: 250 FVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 308
            +N KN      I+  TDG G D      G      +A    + G      +     G  
Sbjct: 215 IINYKNGDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDN 273

Query: 309 LSL--SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEIN 365
           + +  S + V    K + G L  G +    +  L+     K ++  K VTH  + F+ I 
Sbjct: 274 IDIPRSEWGVGMGHKHIHGGLCPGGRL--RMERLIDLVFYKRVDPSKLVTHVFRGFDNIE 331

Query: 366 SAFDL 370
            AF L
Sbjct: 332 KAFML 336

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  169 bits (429), Expect = 2e-49
 Identities = 62/368 (16%), Positives = 116/368 (31%), Gaps = 43/368 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           +A       +  V+ E     P S E  VR +   +C +D                  +L
Sbjct: 2   KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61

Query: 75  GHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHEA+GVV  V  N   + EGD  V                  + ++     +     + 
Sbjct: 62  GHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVG 119

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL--LSCGV-STG 189
                      G            SE+      ++V++  +       +  +S    +  
Sbjct: 120 AH---------G----------YMSEFFTSPEKYLVRIPRSQAELGFLIEPISITEKALE 160

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL--CGATRIIGV---DVISEKFEIGKR 244
              A R+A     S+  + G GS+GL      ++   G   +  +   D      +I + 
Sbjct: 161 HAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE 220

Query: 245 FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 304
              T   + +       + D+     D+ +E  G      ++        G   +LGV  
Sbjct: 221 LDATYVDSRQT--PVEDVPDVY-EQMDFIYEATGFPKHAIQSVQALAPN-GVGALLGVPS 276

Query: 305 PGS---QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 361
             +          E++   K L+GS+   ++      +   +    +  L+  VT     
Sbjct: 277 DWAFEVDAGAFHREMVLHNKALVGSVNSHVEHFEAATVTFTK--LPKWFLEDLVTGVHPL 334

Query: 362 EEINSAFD 369
            E  +AFD
Sbjct: 335 SEFEAAFD 342

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  167 bits (426), Expect = 9e-49
 Identities = 63/385 (16%), Positives = 118/385 (30%), Gaps = 46/385 (11%)

Query: 18  RAAIATAPGEPLVIDEV-IVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFPAVFP 71
           +A I   P   + + +V      +  ++++R I   +C +D                   
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            +LGHEAIGVVE   E+  G  +GD+V+P     C  C  C   + + C    F  +   
Sbjct: 62  LVLGHEAIGVVE---ESYHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIH 118

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL--LSCGV--- 186
             D         G             E+   D  ++VK+  ++         L+      
Sbjct: 119 KMD---------G----------FMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSI 159

Query: 187 ------STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
                    V              V++ G G IG+      R  G    +       + E
Sbjct: 160 EEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVE 219

Query: 241 IGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL-ASLVQEAYACCRKGWGKTIV 299
                      N  N  +    +  + G  D   +  G   +++        +  G   +
Sbjct: 220 QTVIEETK--TNYYNSSNGYDKLKDSVGKFDVIIDATGADVNILGNVIPLLGRN-GVLGL 276

Query: 300 LGVDQPGSQ--LSLSSFEVLHSGKILMGSLFGGLKA-KSDIPILLKRYMDKELELDKFVT 356
            G    GS      +  E++H+ K ++G + G     +  +  L              +T
Sbjct: 277 FGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKAAKMLIT 336

Query: 357 HEMKFEEINSAFDLLIKGKCLRCVI 381
             +   +      +L + +     I
Sbjct: 337 KTVSINDEKELLKVLREKEHGEIKI 361

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  155 bits (395), Expect = 2e-44
 Identities = 98/387 (25%), Positives = 155/387 (40%), Gaps = 69/387 (17%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFPRILG 75
           +AA+     EPL I EV     +  EV VRI    +CH+D+      D+P     P I G
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAH-GDWPVKPKLPLIPG 60

Query: 76  HEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +G+VE VG  V  +  GD V IP   + C  C  C S +  LC              
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC-----------EHQ 109

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           + +      G ++        ++EY      +VVK+   +    A  + C GV+T    A
Sbjct: 110 KNA------GYSVD-----GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT--YKA 156

Query: 194 WRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
            +    + G  V I+G+G +G      A A G        ++ VD+  EK E+ K  G  
Sbjct: 157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL------NVVAVDIGDEKLELAKELGAD 210

Query: 249 EFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 308
             VN     D +  +    GG              Q AY   R+G G  +++G+  P  +
Sbjct: 211 LVVNPLK-EDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGL--PPEE 266

Query: 309 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE--LDKFVTH-------EM 359
           + +  F+ + +G  ++GS+ G                 K+L+  L               
Sbjct: 267 MPIPIFDTVLNGIKIIGSIVGTR---------------KDLQEALQFAAEGKVKTIIEVQ 311

Query: 360 KFEEINSAFDLLIKGKCL-RCVIWMGE 385
             E+IN  FD ++KG+   R V+ + +
Sbjct: 312 PLEKINEVFDRMLKGQINGRVVLTLED 338

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  155 bits (395), Expect = 2e-44
 Identities = 96/381 (25%), Positives = 147/381 (38%), Gaps = 65/381 (17%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA--VFPRILG 75
           +AA+  A G PL IDEV V  P   +V+V+I  + +CH+D+      D+P     P I G
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAAD-GDWPVKPTLPFIPG 62

Query: 76  HEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +G V +VG  V  V EGD V +P   + C  C  C      LC            + 
Sbjct: 63  HEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLC-----------EKQ 111

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           Q +      G +++       + EY V D  +V  +   V       + C GV+      
Sbjct: 112 QNT------GYSVN-----GGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTV--YKG 158

Query: 194 WRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
            +  +   G  VVI G+G +G      A A G       R+  VD+   K  + +R G  
Sbjct: 159 LKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL------RVAAVDIDDAKLNLARRLGAE 212

Query: 249 EFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 308
             VN+++    + +     GGA              +A    R+G G   + G+  P   
Sbjct: 213 VAVNARDTDPAAWLQKEI-GGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGL--PPGD 268

Query: 309 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTH-------EMKF 361
                F+V+  G  + GS+ G                D +  LD              K 
Sbjct: 269 FGTPIFDVVLKGITIRGSIVGTRS-------------DLQESLDFAAHGDVKATVSTAKL 315

Query: 362 EEINSAFDLLIKGKCL-RCVI 381
           +++N  F  L +GK   R V+
Sbjct: 316 DDVNDVFGRLREGKVEGRVVL 336

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  150 bits (382), Expect = 2e-42
 Identities = 83/389 (21%), Positives = 141/389 (36%), Gaps = 69/389 (17%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFP 71
           P   +  I       L   ++ V  P ++E+ + +  + +CH+D+  W   D+P     P
Sbjct: 3   PETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWH-GDWPLPVKLP 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
            + GHE  GVV  +GENV G   GD   I      C  C  C     + C          
Sbjct: 62  LVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNC---------- 111

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTG 189
            P    S      G T        SF +Y   D      +       +   + C G++  
Sbjct: 112 -PHADLS------GYTHD-----GSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITV- 158

Query: 190 VGAAWRTANVEVGSTVVIF----GLGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGK 243
              A ++AN+  G  V I     GLGS+    A A G       R++G+D    K E+ +
Sbjct: 159 -YKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY------RVLGIDGGEGKEELFR 211

Query: 244 RFGVTEFVNSKNCGD-KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 302
             G   F++     D    ++  TDGGA          + ++ +    R   G T+++G+
Sbjct: 212 SIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGM 270

Query: 303 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE--LDKFVTH--- 357
              G++     F  +     ++GS  G                  +    LD F      
Sbjct: 271 P-AGAKCCSDVFNQVVKSISIVGSYVGNR---------------ADTREALDFFARGLVK 314

Query: 358 ---EM-KFEEINSAFDLLIKGKCL-RCVI 381
              ++     +   ++ + KG+ + R V+
Sbjct: 315 SPIKVVGLSTLPEIYEKMEKGQIVGRYVV 343

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  142 bits (360), Expect = 6e-39
 Identities = 72/403 (17%), Positives = 137/403 (33%), Gaps = 56/403 (13%)

Query: 18  RAAIATAPGEPLVIDEV----IVDP--PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP 71
           ++ +     + L ++ V    +        H V ++++ T++C SD   ++   F     
Sbjct: 4   KSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYR-GRFIVPKG 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
            +LGHE  G V   G +V+ +  GD V +P F   C  C  C+  + ++C       +  
Sbjct: 62  HVLGHEITGEVVEKGSDVELMDIGDLVSVP-FNVACGRCRNCKEARSDVCEN-----NLV 115

Query: 131 MPRDQTSRFKDLRGETIHHF-------VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 183
            P      F    G  +  +       V V  +++Y +L      K           L+S
Sbjct: 116 NPDADLGAF----GFDLKGWSGGQAEYVLVP-YADYMLLKFGD--KEQAMEKIKDLTLIS 168

Query: 184 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 243
             + TG      +A V+ GS V I G G +G   A GARL GA  +I  D   E+ ++  
Sbjct: 169 DILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS 227

Query: 244 RFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL--------------ASLVQEAYA 288
             G        +   +  I  +      D   + VG                  +   + 
Sbjct: 228 DAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFD 287

Query: 289 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG-GLK-------AKSDIPIL 340
             R G G   + G+        ++         +  G ++   ++         +    L
Sbjct: 288 VVRAG-GAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPVTNYNRHL 346

Query: 341 LKRYMDKELEL--DKFVTHEMKFEEINSAFDLLIKGKCLRCVI 381
            +  +  ++           +  ++    +    KG   + VI
Sbjct: 347 TEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSPAKFVI 389

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  141 bits (358), Expect = 1e-38
 Identities = 75/378 (19%), Positives = 125/378 (33%), Gaps = 50/378 (13%)

Query: 37  DPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96
                H V ++++ T++C SD    +     A    +LGHE  G V   G +V+ +  GD
Sbjct: 29  GKKIEHGVILKVVSTNICGSDQHMVR-GRTTAQVGLVLGHEITGEVIEKGRDVENLQIGD 87

Query: 97  -VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVS- 154
            V +P F   C  C  C+     +C                +R     G         + 
Sbjct: 88  LVSVP-FNVACGRCRSCKEMHTGVCL-----------TVNPARAGGAYGYV--DMGDWTG 133

Query: 155 SFSEYTVLDIAHV--VKVDPTVPPNRAC----LLSCGVSTGVGAAWRTANVEVGSTVVIF 208
             +EY ++  A    +K+               LS  + TG   A  TA V  GSTV + 
Sbjct: 134 GQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVA 192

Query: 209 GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG 268
           G G +GLA A  ARL GA  +I  D+   +    K  G      S +      I  +   
Sbjct: 193 GAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGE 252

Query: 269 -GADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 312
              D   + VG                A+++       R   GK  + G+       ++ 
Sbjct: 253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVD 311

Query: 313 SFEVLHSGKILMGSLFG-GLK-------AKSDIPILLKRYMDKELELDK-FVTHEMKFEE 363
           +   + S  I  G  +                   L++  M   + + +      +  ++
Sbjct: 312 AAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDD 371

Query: 364 INSAFDLLIKGKCLRCVI 381
               +     G   + VI
Sbjct: 372 APRGYGEFDAGVPKKFVI 389

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  105 bits (265), Expect = 7e-26
 Identities = 89/374 (23%), Positives = 146/374 (39%), Gaps = 58/374 (15%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRIL 74
           RA +  A G P  L + ++ V  P   EVRVR+   +L H DV   K +       P +L
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  GVV++VG  V+G   GD V+ +    C  C  C + + NLC  +           
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRY----------- 110

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                  + GE  H      +++EY VL  A++      +    A  +     T    AW
Sbjct: 111 ------QILGEHRH-----GTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLT----AW 155

Query: 195 R----TANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVI-----SEKFEIGKR 244
           +       V  G  V++   GS + +A  + A+L GA       VI      +K    K 
Sbjct: 156 QMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGAR------VIATAGSEDKLRRAKA 209

Query: 245 FGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 303
            G  E VN  +      +  +T G GAD   +  G A   +        G G+  + G  
Sbjct: 210 LGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG-ALYFEGVIKATANG-GRIAIAGA- 266

Query: 304 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE--LDKFVTHEMKF 361
             G + +L    V +    ++GS      +KS +  +L+   + +L+  + +     +  
Sbjct: 267 SSGYEGTLPFAHVFYRQLSILGSTMA---SKSRLFPILRFVEEGKLKPVVGQ----VLPL 319

Query: 362 EEINSAFDLLIKGK 375
           E       LL + +
Sbjct: 320 EAAAEGHRLLEERR 333

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score =  102 bits (256), Expect = 1e-24
 Identities = 67/391 (17%), Positives = 118/391 (30%), Gaps = 78/391 (19%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
           P Q  A       E  V +          +V VR+   ++  SD     M+   A     
Sbjct: 9   PPQQTALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSD---TSMRGQFATPWAF 65

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           LG +  G V +VG +V  +  GD V                           ++ P  P 
Sbjct: 66  LGTDYAGTVVAVGSDVTHIQVGDRVY----------------------GAQNEMCPRTPD 103

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST----- 188
                                +FS+YTV       K+   +   +A  L  G+ST     
Sbjct: 104 Q-------------------GAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAM 144

Query: 189 ---GVGAAW----RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEK-F 239
              G+        +         V+++G   +      +  RL G   I      S   F
Sbjct: 145 KLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIA---TCSPHNF 201

Query: 240 EIGKRFGVTEFV--NSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT 297
           ++ K  G  E     + N      I   T     Y  +C+         +A   +  G  
Sbjct: 202 DLAKSRGAEEVFDYRAPNLAQT--IRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHY 259

Query: 298 IVL--GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLK------RYMDKEL 349
           + L    +   ++  +++   L       GS +     +       +      R   + +
Sbjct: 260 VSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLV 319

Query: 350 ELDKFVTHEMK-----FEEINSAFDLLIKGK 375
           E  + V H ++     F+ I    +L+ KG+
Sbjct: 320 EDGRLVHHPLRVVQGGFDHIKQGMELVRKGE 350

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  103 bits (258), Expect = 2e-24
 Identities = 68/412 (16%), Positives = 129/412 (31%), Gaps = 85/412 (20%)

Query: 12  GKPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDV---------- 58
               +  A + T   +P   + +D+V V      E  V ++ +S+ ++ V          
Sbjct: 38  KDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLST 97

Query: 59  --------TFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECV 110
                       +     +   ++G +  GVV   G  V+    GD V+ H L+   E  
Sbjct: 98  FGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESS 157

Query: 111 GCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV 170
              +             +   P  +   F+   G            +E  ++    ++  
Sbjct: 158 DGHND------------TMLDPEQRIWGFETNFG----------GLAEIALVKSNQLMPK 195

Query: 171 DPTVPPNRACLLSCGVSTGVGAAWR------TANVEVGSTVVIFGLGS-IGLAVAEGARL 223
              +    A       ST    A+R       A ++ G  V+I+G    +G    + A  
Sbjct: 196 PDHLSWEEAAAPGLVNST----AYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALA 251

Query: 224 CGATRIIGVDVIS--EKFEIGKRFGVTEFVNSKNCGDKSI-----------------IID 264
            GA  I    V+S  +K EI +  G    ++    G +                   I +
Sbjct: 252 GGANPIC---VVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRE 308

Query: 265 MTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKIL 323
           +T G   D  FE  G  +    +    RKG G          G      +  +  S K +
Sbjct: 309 LTGGEDIDIVFEHPGRETFGA-SVFVTRKG-GTITTCAS-TSGYMHEYDNRYLWMSLKRI 365

Query: 324 MGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 375
           +GS F   +   +      R +  +  +   ++     E+   A   + +  
Sbjct: 366 IGSHFANYREAWE----ANRLIA-KGRIHPTLSKVYSLEDTGQAAYDVHRNL 412

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  101 bits (253), Expect = 4e-24
 Identities = 75/367 (20%), Positives = 120/367 (32%), Gaps = 60/367 (16%)

Query: 20  AIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRIL 74
             +T       L + E  V     H++ VR +  SL + D     ++        FP + 
Sbjct: 30  EWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDK--LVLETGMGLDLAFPFVP 87

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             +  GVVE+VG++V     GD VI  F     + +   + +                  
Sbjct: 88  ASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYET------LGGAHP 141

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                                 SEY VL     V    ++    A  L C   T    AW
Sbjct: 142 GV-------------------LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLT----AW 178

Query: 195 R----TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII--GVDVISEKFEIGKRFGVT 248
                  ++  G  VV+ G G + L   + A+  GA  I+        EK +     G  
Sbjct: 179 FALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSR---EKLDRAFALGAD 235

Query: 249 EFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 307
             +N         +  +T   GAD+  E  G A L Q +        G+  V+GV   G 
Sbjct: 236 HGINRLEEDWVERVYALTGDRGADHILEIAGGAGLGQ-SLKAVAPD-GRISVIGV-LEGF 292

Query: 308 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKF---VTHEMKFEEI 364
           ++S     +L    ++ G   G  +A  D        +   ++       +    KF E+
Sbjct: 293 EVSGPVGPLLLKSPVVQGISVGHRRALED--------LVGAVDRLGLKPVIDMRYKFTEV 344

Query: 365 NSAFDLL 371
             A   L
Sbjct: 345 PEALAHL 351

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 97.2 bits (242), Expect = 2e-22
 Identities = 61/394 (15%), Positives = 113/394 (28%), Gaps = 78/394 (19%)

Query: 25  PGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDV------------------TFWKMKDF 66
             + L + EV +      EV V ++ +S+ ++ V                          
Sbjct: 46  VRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATR 105

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
                 +LG +  GVV   G  V     GD VI H      E        G L       
Sbjct: 106 HDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVD-EQEPATHGDGMLG------ 158

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
                     +  +    ET          +EY V+  + ++     +    A +     
Sbjct: 159 ----------TEQRAWGFETNF-----GGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCA 203

Query: 187 STGVGAAWR------TANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKF 239
            T    A+R       A ++ G  V+I+G    +G    +  +  G    + V   ++K 
Sbjct: 204 GT----AYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKE 258

Query: 240 EIGKRFGVTEFVNSKNCGDKSII-----------------IDMTDG-GADYCFECVGLAS 281
              +  G    +N    G    I                 +    G   D  FE  G  +
Sbjct: 259 AAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVT 318

Query: 282 LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILL 341
               +    R+G G  +  G    G   +  +  +    K ++GS     + +       
Sbjct: 319 FGL-SVIVARRG-GTVVTCGS-SSGYLHTFDNRYLWMKLKKIVGSHGANHEEQQA----T 371

Query: 342 KRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 375
            R  +    +   ++      E   A  ++   +
Sbjct: 372 NRLFESG-AVVPAMSAVYPLAEAAEACRVVQTSR 404

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 95.8 bits (239), Expect = 3e-22
 Identities = 61/380 (16%), Positives = 113/380 (29%), Gaps = 73/380 (19%)

Query: 14  PIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FP 67
           P + RA +    G+P   + +  + +      +VRV+++   +  SD+    ++      
Sbjct: 24  PARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDI--NMIQGNYGLL 81

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
              P + G+E +  V +VG NV G+  GD VI              +  G          
Sbjct: 82  PELPAVGGNEGVAQVVAVGSNVTGLKPGDWVI-----------PANAGLG---------- 120

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
                                      ++    V     +++V   +P   A  L     
Sbjct: 121 ---------------------------TWRTEAVFSEEALIQVPSDIPLQSAATLGVNPC 153

Query: 188 TGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV---DVISEKFEIGK 243
           T          ++ G +V+       +G AV + A   G   I  V     I +  +  K
Sbjct: 154 TAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK 213

Query: 244 RFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 302
             G    +  +      +     D         CVG      E      +G G  +  G 
Sbjct: 214 SLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVG-GKSSTELLRQLARG-GTMVTYGG 271

Query: 303 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL-------ELDKFV 355
                 +  S   ++     L G  +     K   P   K  +   L       +L    
Sbjct: 272 -MAKQPVVASVSLLIFKDLKLRG-FWLSQWKKDHSPDQFKELIL-TLCDLIRRGQLTAPA 328

Query: 356 THEMKFEEINSAFDLLIKGK 375
             ++  ++  SA +  +K  
Sbjct: 329 CSQVPLQDYQSALEASMKPF 348

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 95.0 bits (237), Expect = 6e-22
 Identities = 86/397 (21%), Positives = 134/397 (33%), Gaps = 95/397 (23%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
            P++     A      L             +VR +++   +CHSD+   K     +++P 
Sbjct: 13  HPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPL 72

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLAD-CTECVGCRSKKGNLCSAFPFKISPWM 131
           + GHE +G V  VG  V  V  GD V    L   C  C  C +   N C           
Sbjct: 73  VPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMIL------ 126

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST-- 188
               T       G   +       +S + V +  ++++    +P +    L C G++   
Sbjct: 127 ----TYASIYHDGTITY-----GGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYS 177

Query: 189 -----GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISE- 237
                G+           G  + I GLG +G      A A G++         V VIS  
Sbjct: 178 PLKYFGLDEP--------GKHIGIVGLGGLGHVAVKFAKAFGSK---------VTVISTS 220

Query: 238 ---KFEIGKRFGVTEFVNSKNCGDKS-------IIIDMTDGGADYCFECVGLASLVQEAY 287
              K E  K FG   F+ S++             IID                       
Sbjct: 221 PSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL------------LPL 268

Query: 288 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK---------AKSDIP 338
               K  GK I++G   P   L L +F ++   KI+ GS  GG+K         AK +I 
Sbjct: 269 FGLLKSHGKLILVGA--PEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKHNI- 325

Query: 339 ILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 375
                  D E+         +  + +N+A + L K  
Sbjct: 326 -----TADIEV---------ISTDYLNTAMERLAKND 348

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 91.5 bits (228), Expect = 9e-21
 Identities = 81/397 (20%), Positives = 133/397 (33%), Gaps = 95/397 (23%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
              +     A  P   L      +      +V +RIIC  +CH+D+   K     + +P 
Sbjct: 6   AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPM 65

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
           + GHE +G V  VG +V     GD+V +   +  C  C  C       C    +      
Sbjct: 66  VPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIW------ 119

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST-- 188
               +     + G+          F++ TV+    VVK+   +   +A  L C GV+   
Sbjct: 120 ----SYNDVYINGQPTQ-----GGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYS 170

Query: 189 -----GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISE- 237
                G+           G    I GLG +G     +A A G           V VIS  
Sbjct: 171 PLSHFGLKQP--------GLRGGILGLGGVGHMGVKIAKAMGHH---------VTVISSS 213

Query: 238 ---KFEIGKRFGVTEFVNSKNCGDKS-------IIIDMTDGGADYCFECVGLASLVQEAY 287
              + E  +  G  ++V   +    S        +ID                    E Y
Sbjct: 214 NKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHAL------------EPY 261

Query: 288 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK---------AKSDIP 338
               K  GK I++GV    + L   +  ++   K++ GS  G +K          +  + 
Sbjct: 262 LSLLKLDGKLILMGV--INNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGL- 318

Query: 339 ILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 375
                    E+         +K + +N+AF+ L K  
Sbjct: 319 -----SSIIEV---------VKMDYVNTAFERLEKND 341

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 91.1 bits (227), Expect = 1e-20
 Identities = 78/397 (19%), Positives = 144/397 (36%), Gaps = 88/397 (22%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
                ++ +A  A +  +PL   ++    P  ++V++ I    +CHSD+   + +    V
Sbjct: 16  YKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTV 75

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKIS 128
           +P + GHE +G V +VG+ V+    GD+V +   +  C  C  C     N C        
Sbjct: 76  YPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTG--- 132

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV-DPTVPPNRACLLSC-GV 186
                  T                   +S+  V+   +V+++  P         L C G+
Sbjct: 133 -------TYNSPTPDEPGHTL----GGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGI 181

Query: 187 STGVGAAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS-- 236
           +T     +   R      G  V + G+G +G     LA A GA          V   +  
Sbjct: 182 TT-----YSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAH---------VVAFTTS 227

Query: 237 -EKFEIGKRFGVTEFVNSKNCGDKS-------IIIDMTDGGADYCFECVGLASLVQEAYA 288
             K E  K  G  E VNS+N  + +        I++      +             + + 
Sbjct: 228 EAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNL------------DDFT 275

Query: 289 CCRKGWGKTIVLGVDQPGSQL-SLSSFEVLHSGKILMGSLFGGLK---------AKSDIP 338
              K  G   ++G   P +   S   F ++   + + GS+ GG+          A+  I 
Sbjct: 276 TLLKRDGTMTLVGA--PATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGI- 332

Query: 339 ILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 375
                  D E+         ++ ++IN A++ +++G 
Sbjct: 333 -----VADIEM---------IRADQINEAYERMLRGD 355

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 89.6 bits (223), Expect = 3e-20
 Identities = 82/387 (21%), Positives = 137/387 (35%), Gaps = 79/387 (20%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
            +Q +     +  E     +         +V + I+   +CHSD+     +    ++P I
Sbjct: 2   RVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMI 61

Query: 74  LGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE  G+++ VG+ V     GDVV +  F+  C  C  C+  +   C+   F       
Sbjct: 62  PGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYD---- 117

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVG 191
                       E          +S   V+D  +V+ VD   P  +   L C G++T   
Sbjct: 118 ----CLDSFHDNEPHM-----GGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITT--- 165

Query: 192 AAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS---EKFE 240
             +   + + V  G+ V + G G +G      AVA GA          V V +    K +
Sbjct: 166 --YSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAE---------VSVFARNEHKKQ 214

Query: 241 IGKRFGVTEFVNSKNCGDKS--IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI 298
                GV  F        +    II       D             + Y       G   
Sbjct: 215 DALSMGVKHFYTDPKQCKEELDFIISTIPTHYDL------------KDYLKLLTYNGDLA 262

Query: 299 VLGVDQPGSQLSLSSFEVLHSG-KILMGSLFGGLK---------AKSDIPILLKRYMDKE 348
           ++G+        LS F+ +H G + + GSL GG+K          K +I      Y + +
Sbjct: 263 LVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMVDFSIKHNI------YPEID 316

Query: 349 LELDKFVTHEMKFEEINSAFDLLIKGK 375
           L         +  ++I++A+  L  GK
Sbjct: 317 L---------ILGKDIDTAYHNLTHGK 334

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 83.7 bits (208), Expect = 4e-18
 Identities = 74/390 (18%), Positives = 126/390 (32%), Gaps = 89/390 (22%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFPRIL 74
           A  +    +     +    P   H++ ++I    +C SD+      W     P V     
Sbjct: 11  AIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLV-V--- 66

Query: 75  GHEAIGVVESVGENVD-GVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE +G V  +G   + G+  G  V +   +  C EC  C++     C+ F         
Sbjct: 67  GHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVT------- 119

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVG 191
              T       G      VS   ++ Y  +    VV +   +P + A  L C G++    
Sbjct: 120 ---TYSQPYEDGY-----VSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTV--- 168

Query: 192 AAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS---EKFE 240
             +          G  V I GLG IG     ++ A GA            VIS    K E
Sbjct: 169 --YSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAE---------TYVISRSSRKRE 217

Query: 241 IGKRFGVTEFVNSKNCGDKS--------IIIDMTDGGADYCFECVGLASLVQEAYACCRK 292
              + G   ++ +   GD          +I+       D  F                 K
Sbjct: 218 DAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDF----------NIMPKAMK 267

Query: 293 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELEL- 351
             G+ + + +  P     LS          +  S  G +K   ++       +   L+L 
Sbjct: 268 VGGRIVSISI--PEQHEMLSLKPYGLKAVSISYSALGSIK---EL-----NQL---LKLV 314

Query: 352 -DKFVTHE-----MKFEEINSAFDLLIKGK 375
            +K +        +    ++ AF+ + KG 
Sbjct: 315 SEKDIKIWVETLPVGEAGVHEAFERMEKGD 344

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 82.8 bits (205), Expect = 9e-18
 Identities = 48/325 (14%), Positives = 83/325 (25%), Gaps = 89/325 (27%)

Query: 15  IQCRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF--------- 60
           I  +A + T  GEP         E+  D    +EV V+ + + +  SD+           
Sbjct: 2   ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKP 61

Query: 61  -WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNL 119
                          G+E +  V  VG NV  +  GD VIP  +   T            
Sbjct: 62  AKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGT------------ 109

Query: 120 CSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD-------- 171
                                               +  + + +    +K+         
Sbjct: 110 ------------------------------------WRTHALGNDDDFIKLPNPAQSKAN 133

Query: 172 ---PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF--GLGSIGLAVAEGARLCGA 226
                +  N+   +S    T          +  G    I   G  ++G   ++  +L   
Sbjct: 134 GKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF 193

Query: 227 TRIIGV----DVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTD------GGADYCFEC 276
              I V      + E     K  G T+ +       +     + +      G A     C
Sbjct: 194 -NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNC 252

Query: 277 VGLASLVQEAYACCRKGWGKTIVLG 301
           VG                G  +  G
Sbjct: 253 VG-GKSSTGIARKLNNN-GLMLTYG 275

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 77.6 bits (192), Expect = 5e-16
 Identities = 48/289 (16%), Positives = 94/289 (32%), Gaps = 59/289 (20%)

Query: 18  RAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRI 73
           +       G P   L ++   ++P   +EV VR++   +  SD+             P I
Sbjct: 6   KLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNI 65

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
            G+E +G+VE+VG  V   + G  V+P                                 
Sbjct: 66  PGYEGVGIVENVGAFVSRELIGKRVLP--------------------------------- 92

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
                                ++ EY       VV +  ++    A  +     T     
Sbjct: 93  ----------------LRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTC 136

Query: 194 WRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
             T N++    +++     +IG   A+ +++    R+I V   ++  E   R G    ++
Sbjct: 137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVID 195

Query: 253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL 300
           +        ++++T+G GAD   + +G      E     R       + 
Sbjct: 196 TSTAPLYETVMELTNGIGADAAIDSIG-GPDGNELAFSLR--PNGHFLT 241

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 69.2 bits (169), Expect = 4e-13
 Identities = 52/402 (12%), Positives = 104/402 (25%), Gaps = 99/402 (24%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF------------ 60
             +Q R+ I ++    L +D +    P   EV +RI  + L  SD+              
Sbjct: 4   SALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKA 63

Query: 61  -----------------WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL 103
                             +           +G+E  GVV   G +          +    
Sbjct: 64  SGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTV---- 119

Query: 104 ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD 163
                                                          +  + +S+Y  + 
Sbjct: 120 ---------------------------------------------AAIGGAMYSQYRCIP 134

Query: 164 IAHVVKVDPTVPPNR-ACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGLGS-IGLAVA 218
               + +     P   A      ++     A     T  +E  S +V     S +G  + 
Sbjct: 135 ADQCLVLPEGATPADGASSFVNPLT-----ALGMVETMRLEGHSALVHTAAASNLGQMLN 189

Query: 219 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECV 277
           +     G  +++ +    E+ ++ K  G     N+ +      + +     GA   F+  
Sbjct: 190 QICLKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEALVSTGATIAFDAT 248

Query: 278 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQL-SLSSFEVLHSGKILMGSLFGGLKAKSD 336
           G   L  +   C      K+         +    +  +  L +        FG       
Sbjct: 249 GGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPTEFNRNFGMAWGMGG 308

Query: 337 ---IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 375
               P L K   ++   L + V       E+ + F      +
Sbjct: 309 WLLFPFLQKIGRERANALKQRV-----VAELKTTFASHYSKE 345

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 68.0 bits (167), Expect = 6e-13
 Identities = 42/278 (15%), Positives = 79/278 (28%), Gaps = 71/278 (25%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFP 71
                   G P  L   E     P  +E++V      +   D       +     P+   
Sbjct: 3   TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPS--- 59

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
             LG EA G+V  VG  V  +  GD V           +G                    
Sbjct: 60  -GLGTEAAGIVSKVGSGVKHIKAGDRV-----VYAQSALG-------------------- 93

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA--CLLSCGVSTG 189
                                  ++S    +       +   +   +A    L      G
Sbjct: 94  -----------------------AYSSVHNIIADKAAILPAAISFEQAAASFLK-----G 125

Query: 190 VGA---AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           +       +T  ++     +     G +GL   + A+  GA  +IG    ++K +   + 
Sbjct: 126 LTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQKAQSALKA 184

Query: 246 GVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASL 282
           G  + +N +       + ++T G      ++ VG  + 
Sbjct: 185 GAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTW 222

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 68.0 bits (167), Expect = 7e-13
 Identities = 57/285 (20%), Positives = 91/285 (31%), Gaps = 85/285 (29%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFP 71
           +    +  G P  L   +   + P    V VR     L   D  +    +     P+   
Sbjct: 3   KRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPS--- 59

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
             LG E  GVVE+VG+ V     GD V     A  T  +G                    
Sbjct: 60  -GLGAEGAGVVEAVGDEVTRFKVGDRV-----AYGTGPLG-------------------- 93

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                                  ++SE  VL  A++VK+      +        VS    
Sbjct: 94  -----------------------AYSEVHVLPEANLVKL-----AD-------SVSFEQA 118

Query: 192 AAW------------RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK 238
           AA             +T  V+ G  ++     G +G    + A+  GA  +IG     EK
Sbjct: 119 AALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAK-LIGTVSSPEK 177

Query: 239 FEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASL 282
               K  G  E ++  +      ++++TDG      ++ VG  + 
Sbjct: 178 AAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQDTW 222

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 67.6 bits (166), Expect = 8e-13
 Identities = 57/274 (20%), Positives = 92/274 (33%), Gaps = 58/274 (21%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF---WKMKDFPAVFPR 72
            AA+    G P   V +EV V  P   +VR+R     +   D                P 
Sbjct: 3   MAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPI 62

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           ++G EA  VVE VG  V     G+ V       C   +G                     
Sbjct: 63  VVGFEAAAVVEEVGPGVTDFTVGERV-----CTCLPPLG--------------------- 96

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS--TGV 190
                                 ++S+  +     ++KV   +  +   L    +   T  
Sbjct: 97  ----------------------AYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQ 134

Query: 191 GAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
               +T  V+ G  V+I    G +G  +   AR  GAT +IG     EK E  ++ G   
Sbjct: 135 YLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGAT-VIGTVSTEEKAETARKLGCHH 193

Query: 250 FVNSKNCGDKSIIIDMTDG-GADYCFECVGLASL 282
            +N        ++ ++T G G D  ++ +G  +L
Sbjct: 194 TINYSTQDFAEVVREITGGKGVDVVYDSIGKDTL 227

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 52/269 (19%), Positives = 97/269 (36%), Gaps = 60/269 (22%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           +  +    G    +  ++  V   +  E+ ++   T + + +  F K   +P   P +LG
Sbjct: 10  KVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGI-YPCEKPYVLG 68

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
            EA G V + G+ V     GD V                                     
Sbjct: 69  REASGTVVAKGKGVTNFEVGDQVA------------------------------------ 92

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYT-VLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA-- 192
                         ++S S+F++Y+ +     V+K+          L + G+   + A  
Sbjct: 93  --------------YISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALS 138

Query: 193 -AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
                 +V+ G  V++F   G +GL + +  ++ GA   I V    EK +I K +G    
Sbjct: 139 FTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAH-TIAVASTDEKLKIAKEYGAEYL 197

Query: 251 VNSKNCGDKSIIIDMTDG-GADYCFECVG 278
           +N+        ++  T+G G D  F+ VG
Sbjct: 198 INASKEDILRQVLKFTNGKGVDASFDSVG 226

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 47/288 (16%), Positives = 83/288 (28%), Gaps = 70/288 (24%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           +  E    ++  + +              +  +  V  P   ++ VR     +  SD+ +
Sbjct: 13  LGTENLYFQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINY 72

Query: 61  WKMKD---FPAVFPRILGHEAIGVVESVGENVDG-VVEGDVVIPHFLADCTECVGCRSKK 116
                        P  +G E IG V ++G +       G  V                  
Sbjct: 73  --SAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA----------------- 113

Query: 117 GNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176
                                            +++  SF+EYTV+  +    V P+V P
Sbjct: 114 ---------------------------------YMAPGSFAEYTVVPASIATPV-PSVKP 139

Query: 177 NRACLLSCGVSTGVGAAW----RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIG 231
               LL  G +     A+        +  G  V++    G  G    + ++      +IG
Sbjct: 140 EYLTLLVSGTT-----AYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIG 193

Query: 232 VDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG 278
                EK    K  G    +N K       ++      G D  +E VG
Sbjct: 194 TCSSDEKSAFLKSLGCDRPINYKT-EPVGTVLKQEYPEGVDVVYESVG 240

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 64.5 bits (158), Expect = 8e-12
 Identities = 58/380 (15%), Positives = 116/380 (30%), Gaps = 94/380 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFPAVF 70
           +A      G P  L + +        +++ +++   SL   D      + +  K      
Sbjct: 8   KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P  LG++  G V  +G +V+ V  GD V+                               
Sbjct: 68  PSGLGYDFSGEVIELGSDVNNVNIGDKVM----------------------GIA------ 99

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
                   F D              ++EY       +++    +   +A      + T  
Sbjct: 100 -------GFPDHPC----------CYAEYVCASPDTIIQKLEKLSFLQA----ASLPTAG 138

Query: 191 GAAW---RTANVEVGSTVVIF----GLGSIG--LAVAEGARLCGATRIIGVDVISEKFEI 241
             A      A V+ G  V+I     G+G +   LA  +G  +                  
Sbjct: 139 LTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-------KRNHAF 191

Query: 242 GKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 301
            K  G  + +N      +   +       D   + VG      ++  C ++  G  IV  
Sbjct: 192 LKALGAEQCINYH----EEDFLLAISTPVDAVIDLVGGDVG-IQSIDCLKET-GC-IVSV 244

Query: 302 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPIL--LKRYMDKELELDKFVTHEM 359
                 ++   + +              GL  + +I  L  L + + ++ +L   ++   
Sbjct: 245 PTITAGRVIEVAKQK--------HRRAFGLLKQFNIEELHYLGKLVSED-KLRIEISRIF 295

Query: 360 KFEEINSAFDLL----IKGK 375
           +  E  +A +LL    ++GK
Sbjct: 296 QLSEAVTAHELLETGHVRGK 315

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 64.5 bits (158), Expect = 9e-12
 Identities = 55/301 (18%), Positives = 93/301 (30%), Gaps = 59/301 (19%)

Query: 6   PSNKTAGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM 63
                   P   +A  A +   P  LV  +V       + V V +    +C  D    K 
Sbjct: 11  TLEAQTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKG 70

Query: 64  K-DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 122
           +       P + G E  GVV S           +                          
Sbjct: 71  EYQLKMEPPFVPGIETAGVVRSA---------PEGS------------------------ 97

Query: 123 FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 182
              K                 G+ +  F  +  ++E   +  ++++   P +    A  L
Sbjct: 98  -GIKP----------------GDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVAL 140

Query: 183 SCGVSTGVGAAWRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
                T   A  R   +  G TV++ G  G IG A  + A+  GA ++I V   +   E 
Sbjct: 141 IANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEF 199

Query: 242 GKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL 300
            K  G    +  +  G    + + T G G D   + +G      +A        G+ +V+
Sbjct: 200 VKSVGADIVLPLEE-GWAKAVREATGGAGVDMVVDPIG-GPAFDDAVRTLASE-GRLLVV 256

Query: 301 G 301
           G
Sbjct: 257 G 257

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 66/344 (19%), Positives = 112/344 (32%), Gaps = 88/344 (25%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-----MKDFPAVFPR 72
            AA+      P V+ ++    P   +V V+I  +     D    K             P 
Sbjct: 9   IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLD---AKIRAGEAPHAQQPLPA 65

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           ILG +  G V +VG  VD    GD V            G                     
Sbjct: 66  ILGMDLAGTVVAVGPEVDSFRVGDAVF-----------GL-------------------- 94

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS----CGVST 188
              T     L+G          + +++  +D   +       P      L+      +  
Sbjct: 95  ---TGGVGGLQG----------THAQFAAVDARLLAS----KPAA----LTMRQASVLPL 133

Query: 189 GVGAAW----RTANVEVGSTVVIF----GLGS--IGLAVAEGARLCGATRIIGVDVISEK 238
               AW      A V+ G TV+I     G+G   I +A+A GAR+    R          
Sbjct: 134 VFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATAR-------GSD 186

Query: 239 FEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT 297
            E  +  G T    S+   D     + T G G D  ++ +G   ++  +++  ++  G  
Sbjct: 187 LEYVRDLGATPIDASREPED--YAAEHTAGQGFDLVYDTLG-GPVLDASFSAVKRF-GH- 241

Query: 298 IVLGVDQPGSQLSLSSF-EVLHSGKILMGSLFGGLKAKSDIPIL 340
           +V  +     +L+  SF +  +SG   + +L           +L
Sbjct: 242 VVSCLGWGTHKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEML 285

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 62.2 bits (152), Expect = 6e-11
 Identities = 56/298 (18%), Positives = 96/298 (32%), Gaps = 57/298 (19%)

Query: 11  AGKPIQCRAAIATAPGEP--LVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMK-DF 66
           A      RA      G P  L +   I  P P  H+V +++    +   +          
Sbjct: 24  ATGQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR 83

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             + P   G +  GV+E+VG+N     +GD V        +  +      G         
Sbjct: 84  KPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVF------TSSTIS-----G--------- 123

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
                                        ++EY +     V K+   +   +   +    
Sbjct: 124 ----------------------------GYAEYALAADHTVYKLPEKLDFKQGAAIGIPY 155

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            T   A   +A V+ G +V++ G    +GLA  + AR  G  +I+G     E  +I  + 
Sbjct: 156 FTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQN 214

Query: 246 GVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 302
           G  E  N +       I       G D   E +     + +  +    G G+ IV+G 
Sbjct: 215 GAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-NVNLSKDLSLLSHG-GRVIVVGS 270

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 9/87 (10%)

Query: 18 RAAIATAPG---EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM---KDFPAVFP 71
                A       + ++ V +    + ++ V+     +   D   WK            
Sbjct: 3  EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVD---WKFIKANPINWSNG 59

Query: 72 RILGHEAIGVVESVGENVDGVVEGDVV 98
           + G +  GV+  VG  VD  + G  V
Sbjct: 60 HVPGVDGAGVIVKVGAKVDSKMLGRRV 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 54/366 (14%), Positives = 97/366 (26%), Gaps = 149/366 (40%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           ++ ++        ID +I+            +          FW +              
Sbjct: 43  KSILSKE-----EIDHIIMSKDA--VSGTLRL----------FWTLLSKQE--------- 76

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
                E V + V+ V+  +     FL                    P K     P   T 
Sbjct: 77  -----EMVQKFVEEVLRINY---KFLMS------------------PIKTEQRQPSMMTR 110

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
            + + R      +     F++Y V  +   +K+       R  LL               
Sbjct: 111 MYIEQRDRL---YNDNQVFAKYNVSRLQPYLKL-------RQALL--------------- 145

Query: 198 NVEVGSTVVIFGLGSIG---LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNS 253
            +     V+I G+   G   +A  +                S K +    F +  F +N 
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVA-LDVCL-------------SYKVQCKMDFKI--FWLNL 189

Query: 254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 313
           KNC     +++M             L  L         +         +D   +  S  S
Sbjct: 190 KNCNSPETVLEM-------------LQKL-------LYQ---------IDPNWTSRSDHS 220

Query: 314 FEV---LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 370
             +   +HS +  +  L              K Y +  L L   V +     +  +AF+L
Sbjct: 221 SNIKLRIHSIQAELRRLL-----------KSKPYENCLLVLLN-VQN----AKAWNAFNL 264

Query: 371 LIKGKC 376
                C
Sbjct: 265 ----SC 266

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 18 RAAIATAPG-----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFP 71
          +A     P             + +  P  HE+ V+I   S+   D    K +    +  P
Sbjct: 4  KAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVD---TKQRLMDVSKAP 60

Query: 72 RILGHEAIGVVESVGENVDGVVEGDVV 98
          R+LG +AIGVVESVG  V    +GD+V
Sbjct: 61 RVLGFDAIGVVESVGNEVTMFNQGDIV 87

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 18  RAAIATAPG-----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
           +A     P        L+  E+    P  H++ V +   S+   D    +         +
Sbjct: 24  KAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWK 83

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVV 98
           ++G++A G+V +VG +V     GD V
Sbjct: 84  VIGYDAAGIVSAVGPDVTLFRPGDEV 109

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 25/103 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDP--PNSHEVRVRIICTSLCHSDVTFWKM---------- 63
            A +    G+   L   + ++ P     +EV V++   S+   D     M          
Sbjct: 23  MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPID---VNMRSGYGATALN 79

Query: 64  --------KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV 98
                   K     FP  LG +  GVV   G +V     GD V
Sbjct: 80  MKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEV 122

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-----DFPAVF 70
          RA +    G    L +    +  P   E+++R+    L   D+    M      D P   
Sbjct: 5  RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDL----MVRQGNIDNPPKT 60

Query: 71 PRILGHEAIGVVESVGENVDGVVEGDVVI 99
          P + G E  G+VE++G++V G   GD V+
Sbjct: 61 PLVPGFECSGIVEALGDSVKGYEIGDRVM 89

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 6/148 (4%)

Query: 156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS-IG 214
           ++E     +  V K+   +  + A        T     +  AN+  G +V++   G  +G
Sbjct: 97  WAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVG 156

Query: 215 LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCF 274
            AVA+         + G    + K E  K       +  +N      +  ++  G D   
Sbjct: 157 QAVAQLCSTVPNVTVFGT-ASTFKHEAIKDSV--THLFDRNADYVQEVKRISAEGVDIVL 213

Query: 275 ECVGLASLVQEAYACCRKGWGKTIVLGV 302
           +C+       +  +  +   G  I+ G 
Sbjct: 214 DCLC-GDNTGKGLSLLKPL-GTYILYGS 239

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRIL 74
           R     + G P  +VI +  +      EV VR     +   D+   +     P     IL
Sbjct: 30  RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPIL 89

Query: 75  GHEAIGVVESVGENVDGVVEGDVVI 99
           G E  G +  VG  V G   GD V 
Sbjct: 90  GLELSGEIVGVGPGVSGYAVGDKVC 114

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 9   KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFP 67
              G       +   A    L    + V  P   +V +++   S+  SDV F K +   P
Sbjct: 17  VGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQP 76

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVE-GDVVI 99
            V  R  G E +G + + G+        G  V 
Sbjct: 77  RVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVA 109

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN 88
           LV +     P    EVR+ +    +   D     +  +P      LG E  GVV   G  
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDA-LIALGMYPG--VASLGSEGAGVVVETGPG 282

Query: 89  VDGVVEGDVVI 99
           V G+  GD V+
Sbjct: 283 VTGLAPGDRVM 293

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRIL 74
            A     PG P  L + EV    P   EV +++  ++L  +D+   +   D P     IL
Sbjct: 24  LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNIL 83

Query: 75  GHEAIGVVESVGENVDGVV-EGDVV 98
           G EA G V  +G    G    GD  
Sbjct: 84  GLEASGHVAELGPGCQGHWKIGDTA 108

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           G  ++I+G G IG ++A  A   G   +IGV+
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGM-HVIGVN 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	385
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	100.0
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.88
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.2
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.99
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.68
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.66
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.59
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.53
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.46
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.41
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.07
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.07
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.05
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.03
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.9
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.9
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.84
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.83
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.78
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.73
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.67
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.67
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.65
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.59
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.56
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.53
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.51
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.44
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.4
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.38
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.33
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.3
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.26
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.22
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.2
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.19
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.16
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.14
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.09
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.08
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.08
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.07
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.07
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.05
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.03
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.02
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.01
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.99
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.99
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.99
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.98
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.98
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.95
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.93
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.92
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.92
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.9
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.9
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.89
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.89
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.88
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.88
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.88
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.88
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.87
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.85
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	96.85
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.84
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.83
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.83
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.82
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.82
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.82
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.81
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.8
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.8
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.8
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.8
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.78
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.78
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.77
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.77
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.77
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.76
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.76
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.76
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.76
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.75
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.75
1spx_A	278	Short-chain reductase family member (5L265); paral	96.75
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.74
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.74
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.74
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.74
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.74
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.73
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.71
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.7
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.7
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.69
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.69
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.68
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.67
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.66
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.66
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.66
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.66
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.65
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.65
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.65
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.65
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.64
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.64
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.64
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.64
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.63
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.62
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.62
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.61
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.61
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.61
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.6
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.6
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.6
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.59
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.58
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.57
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.56
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.55
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.54
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.54
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.54
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.53
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.53
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.53
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.52
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.52
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.51
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.5
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.5
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.5
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.5
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.5
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.49
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.49
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.49
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.49
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.49
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.49
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.49
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.48
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.48
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.48
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.47
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.47
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.47
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.47
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.46
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.46
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.46
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.45
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.44
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.43
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.43
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.42
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.42
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.42
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.42
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.41
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.41
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.4
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.39
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.39
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.39
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.38
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.38
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.37
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.37
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.37
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.36
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.36
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.35
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.35
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.34
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.34
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.34
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.33
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.33
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.32
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.32
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.32
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.32
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.31
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.31
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.31
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.31
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.3
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.3
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.3
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.3
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.29
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.28
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.27
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.27
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.26
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.25
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.25
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	96.25
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.25
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.24
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.24
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.24
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.24
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.24
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.23
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.23
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.22
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.22
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.22
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.2
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.2
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.2
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.2
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.19
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.19
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.19
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.19
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.18
4had_A	350	Probable oxidoreductase protein; structural genomi	96.18
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.17
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.17
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.17
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.17
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.15
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.15
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.15
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.14
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.14
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	96.13
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.13
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.12
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.11
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.11
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.11
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.11
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.1
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.09
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.08
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.08
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.08
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.08
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.07
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.07
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.06
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.05
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.05
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.04
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.04
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.03
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.02
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.01
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.01
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.0
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.0
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.99
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.99
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	95.99
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	95.98
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	95.98
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.97
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	95.96
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	95.96
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	95.95
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	95.94
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	95.94
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.93
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.93
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.93
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	95.92
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.9
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	95.89
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.89
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.89
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	95.88
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.88
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.88
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	95.88
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.87
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.87
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.87
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.86
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	95.86
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	95.85
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.85
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.84
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.84
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	95.83
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	95.81
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.81
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	95.81
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	95.8
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	95.8
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	95.8
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	95.8
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.8
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.79
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.77
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	95.77
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.77
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	95.74
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.74
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.74
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.73
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.71
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.7
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.7
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.69
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.68
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.67
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.67
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.66
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	95.65
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	95.64
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.64
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.64
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	95.63
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.63
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	95.63
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	95.61
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	95.61
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	95.59
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	95.59
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.59
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.58
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	95.58
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	95.58
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	95.58
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.56
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.55
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.55
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	95.55
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	95.54
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.53
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.53
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	95.52
3rih_A	293	Short chain dehydrogenase or reductase; structural	95.51
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.51
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	95.51
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.5
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	95.5
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.49
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.48
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	95.46
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.45
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.45
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.4
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.4
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	95.39
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	95.38
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	95.38
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	95.36
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.34
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.34
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.32
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.32
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	95.32
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	95.3
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.3
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	95.29
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.29
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	95.29
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	95.29
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	95.28
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.28
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.27
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	95.26
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	95.26
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	95.26
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.25
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	95.24
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	95.23
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.22
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.21
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.2
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	95.2
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	95.2
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.19
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.19
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	95.19
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	95.18
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.18
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	95.17
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	95.17
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.16
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	95.16
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	95.16
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.16
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	95.16
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	95.15
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.15
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.15
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	95.14
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	95.13
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.13
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.13
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	95.11
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	95.11
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	95.11
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.11
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	95.1
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	95.1
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.1
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	95.08
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.07
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.07
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	95.05
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	95.05
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	95.05
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	95.05
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	95.04
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.04
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.04
2o07_A	304	Spermidine synthase; structural genomics, structur	95.04
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.03
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	95.02
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	95.02
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	95.01
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	94.99
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	94.98

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=1.1e-64  Score=485.41  Aligned_cols=373  Identities=49%  Similarity=0.945  Sum_probs=327.3

Q ss_pred             CCCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCC
Q 016660           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        11 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      ..++++|||+++.++++++++.++|.|+|+++||||||.+++||++|+++++|.++...+|.++|||++|+|+++|++|+
T Consensus         3 ~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~   82 (378)
T 3uko_A            3 QGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   82 (378)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             cccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCCC
Confidence            34678999999999998899999999999999999999999999999999999877677899999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCcccccccCCceeeccccccceeeeEeeccCceEE
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~  169 (385)
                      +|++||||++.+..+|+.|++|+++++++|.........|.. .+|..+++ .+|...++.++.|+|+||++++++.+++
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~  161 (378)
T 3uko_A           83 EVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFS-VNGKPIYHFMGTSTFSQYTVVHDVSVAK  161 (378)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEE
T ss_pred             cCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccc-cCCcccccccCCcceEeEEEechhheEE
Confidence            999999999999999999999999999999876432223322 23322222 2445555667778999999999999999


Q ss_pred             CCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe
Q 016660          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (385)
Q Consensus       170 iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~  249 (385)
                      +|+++++++||++++++.|||+++.+.++++++++|||+|+|++|++++|+||.+|+++|++++++++|+++++++|+++
T Consensus       162 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  241 (378)
T 3uko_A          162 IDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNE  241 (378)
T ss_dssp             CCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCE
T ss_pred             CCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcE
Confidence            99999999999999999999999888899999999999999999999999999999988999999999999999999999


Q ss_pred             EEeCC--CCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEee
Q 016660          250 FVNSK--NCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  327 (385)
Q Consensus       250 vv~~~--~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  327 (385)
                      ++|++  +.+..+.+++++++++|+|||++|++.+++.+++++++++|+++.+|.......++++...++. ++++.|+.
T Consensus       242 vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~-~~~i~g~~  320 (378)
T 3uko_A          242 FVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTA  320 (378)
T ss_dssp             EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHT-TCEEEECS
T ss_pred             EEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHhc-CcEEEEEE
Confidence            99987  4455556888887899999999999888999999999922999999986555566777666665 89999987


Q ss_pred             ecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEeCC
Q 016660          328 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE  385 (385)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~~~  385 (385)
                      ++.+...+++.++++++++|++++.++++++|+|+++++||+.+++++..|+||++++
T Consensus       321 ~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~Kvvi~~~~  378 (378)
T 3uko_A          321 FGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVLDTSK  378 (378)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCSEEEEETTC
T ss_pred             ecCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCceEEEEecCC
Confidence            7665556789999999999999999999999999999999999998888899999875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=8.6e-62  Score=464.69  Aligned_cols=367  Identities=39%  Similarity=0.706  Sum_probs=311.4

Q ss_pred             CCCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCC
Q 016660           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        11 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      .++|++|||+++.++++++++.++|.|+|+++||+|||.+++||++|+++++|.++ ..+|.++|||++|+|+++|++|+
T Consensus         4 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~   82 (373)
T 1p0f_A            4 AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAGVT   82 (373)
T ss_dssp             TTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECTTCC
T ss_pred             cCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-CCCCcccCcCceEEEEEECCCCC
Confidence            34678999999999987799999999999999999999999999999999988765 56799999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      +|++||||++.+..+|+.|.+|+++++++|.......+.|+..+|..++. .+|...+++...|+|+||++++++.++++
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~i  161 (373)
T 1p0f_A           83 CVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKI  161 (373)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEETTSEEEE
T ss_pred             ccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccc-cCCcccccccCCccceeEEEEchhhEEEC
Confidence            99999999999999999999999999999987543211233322211110 11112222233479999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v  250 (385)
                      |++++++ ||++++++.|||+++.+.++++++++|||+|+|++|++++|+||.+|+++|++++++++|+++++++|++++
T Consensus       162 P~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v  240 (373)
T 1p0f_A          162 DPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATEC  240 (373)
T ss_dssp             CTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEE
T ss_pred             CCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEE
Confidence            9999999 999999999999988888899999999999999999999999999999789999999999999999999999


Q ss_pred             EeCCC--CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCC-ceEEEeccCCCCCcccccHHHHhhcCcEEEEee
Q 016660          251 VNSKN--CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  327 (385)
Q Consensus       251 v~~~~--~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  327 (385)
                      +|+++  .+..+.+++.+++++|+|||++|....++.+++++++ + |+++.+|........+++...++.++ ++.|++
T Consensus       241 i~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~  318 (373)
T 1p0f_A          241 LNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC-GSGVTVVLGLASPNERLPLDPLLLLTGR-SLKGSV  318 (373)
T ss_dssp             ECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECCCCCTTCCEEECTHHHHTTC-EEEECS
T ss_pred             EecccccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhc-CCCEEEEEccCCCCCccccCHHHhccCc-eEEeec
Confidence            99875  3445557777777999999999998779999999999 6 99999997543334567777777777 999986


Q ss_pred             ecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          328 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      ...+. .++++++++++++|++++.+++++.|+|+++++||+.+++++..|++|++
T Consensus       319 ~~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  373 (373)
T 1p0f_A          319 FGGFK-GEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQGVRSIMIY  373 (373)
T ss_dssp             GGGCC-GGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSCSEEEEEC
T ss_pred             cCCcC-HHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCcceEEEeC
Confidence            54432 26899999999999998888899999999999999999888778999875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=2.9e-62  Score=468.03  Aligned_cols=370  Identities=44%  Similarity=0.801  Sum_probs=313.2

Q ss_pred             CCCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCC
Q 016660           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        11 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      +++||+|||+++.++++++++.++|.|+|+++||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|++|+
T Consensus         1 ~~~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~   80 (373)
T 2fzw_A            1 ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVT   80 (373)
T ss_dssp             CCCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCCccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCC
Confidence            35789999999999987799999999999999999999999999999999988765556899999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      +|++||||++.+..+|+.|.+|+++++++|.......+.|+..+|..++. ..|...+++...|+|+||++++++.++++
T Consensus        81 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~i  159 (373)
T 2fzw_A           81 KLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKI  159 (373)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCccccc-ccccccccccCCccceeEEEEchhheEEC
Confidence            99999999999999999999999999999976431000122222211110 11222222334579999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v  250 (385)
                      |+++++++||++++++.|||+++.+.++++++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++++
T Consensus       160 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v  239 (373)
T 2fzw_A          160 DPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC  239 (373)
T ss_dssp             CTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEE
T ss_pred             CCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceE
Confidence            99999999999999999999988888899999999999999999999999999999789999999999999999999999


Q ss_pred             EeCCC--CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCC-ceEEEeccCCCCCcccccHHHHhhcCcEEEEee
Q 016660          251 VNSKN--CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  327 (385)
Q Consensus       251 v~~~~--~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  327 (385)
                      +++++  .+..+.+++.+++++|+|||++|....++.+++++++ + |+++.+|........+++...++.++ ++.|+.
T Consensus       240 i~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~  317 (373)
T 2fzw_A          240 INPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHK-GWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTA  317 (373)
T ss_dssp             ECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECS
T ss_pred             eccccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhcc-CCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEec
Confidence            99875  2344557777777999999999998779999999999 6 99999997643334567777777777 999986


Q ss_pred             ecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          328 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      +..+...++++++++++++|++++.+++++.|+|+++++||+.+++++..|++|++
T Consensus       318 ~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  373 (373)
T 2fzw_A          318 FGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  373 (373)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             cCCCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCcceEEEeC
Confidence            55443346789999999999999888999999999999999999888778999874

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=1.4e-61  Score=463.36  Aligned_cols=368  Identities=40%  Similarity=0.748  Sum_probs=312.2

Q ss_pred             CCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCC
Q 016660           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      .+||+|||+++.++++++++.++|.|+|+++||+|||.+++||++|++++.|.++.. +|.++|||++|+|+++|++|++
T Consensus         4 ~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~P~v~GhE~~G~V~~vG~~v~~   82 (374)
T 2jhf_A            4 GKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP-LPVIAGHEAAGIVESIGEGVTT   82 (374)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCCC-SSBCCCCSEEEEEEEECTTCCS
T ss_pred             CCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCCC-CCcccCcCceEEEEEECCCCCC
Confidence            457899999999998779999999999999999999999999999999998876543 7999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      |++||||++.+..+|+.|++|+++++++|.........|+..+|..++. ..|...+++...|+|+||++++++.++++|
T Consensus        83 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  161 (374)
T 2jhf_A           83 VRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKID  161 (374)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCccccc-ccccccccccCCccCeeEEEEchHHeEECC
Confidence            9999999999999999999999999999987553211233322211110 011122223334799999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv  251 (385)
                      +++++++||++++++.|||+++.+.++++++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|+++++
T Consensus       162 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi  241 (374)
T 2jhf_A          162 AASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV  241 (374)
T ss_dssp             TTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEE
T ss_pred             CCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEe
Confidence            99999999999999999999888888999999999999999999999999999997899999999999999999999999


Q ss_pred             eCCC--CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCC-ceEEEeccCCCCCcccccHHHHhhcCcEEEEeee
Q 016660          252 NSKN--CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  328 (385)
Q Consensus       252 ~~~~--~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  328 (385)
                      |+++  .+..+.+++.+++++|+|||++|.+..++.+++++++ + |+++.+|........+++...++.++ ++.|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~  319 (374)
T 2jhf_A          242 NPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE-AYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGAIF  319 (374)
T ss_dssp             CGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCT-TTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSG
T ss_pred             cccccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhc-CCcEEEEeccCCCCCccccCHHHHhcCC-eEEEecc
Confidence            9875  2344557777767999999999998779999999999 6 99999997643334567777777778 9999865


Q ss_pred             cCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          329 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      ..+...++++++++++++|++++.+++++.|+|+++++||+.+++++..|++|++
T Consensus       320 ~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~  374 (374)
T 2jhf_A          320 GGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF  374 (374)
T ss_dssp             GGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCcceEEEeC
Confidence            5443346789999999999998888899999999999999999888778999875

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5e-62  Score=466.01  Aligned_cols=367  Identities=29%  Similarity=0.499  Sum_probs=310.0

Q ss_pred             CeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        14 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      +|+|||+++.+++.++++.++|.|+|+++||+|||.+++||++|++++.|.++ ..+|.++|||++|+|+++|++|++|+
T Consensus         4 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~   82 (371)
T 1f8f_A            4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQ   82 (371)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             cccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC-CCCCcccCcccceEEEEeCCCCCCCC
Confidence            47899999999987799999999999999999999999999999999998754 45799999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCcee-eccccccceeeeEeeccCceEECCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI-HHFVSVSSFSEYTVLDIAHVVKVDP  172 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~-~~~~~~g~~~~~v~v~~~~~~~iP~  172 (385)
                      +||||++.+ .+|+.|++|+++++++|.........|...+|..++...+|... .+....|+|+||++++++.++++|+
T Consensus        83 ~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP~  161 (371)
T 1f8f_A           83 VGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK  161 (371)
T ss_dssp             TTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred             CCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEECCC
Confidence            999999999 99999999999999999864311001222222111100001000 0112346999999999999999999


Q ss_pred             CCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      ++++++||++++++.|||+++.+.++++++++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++++
T Consensus       162 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~  241 (371)
T 1f8f_A          162 DVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVIN  241 (371)
T ss_dssp             TSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEE
T ss_pred             CCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEec
Confidence            99999999999999999998878889999999999999999999999999999977999999999999999999999999


Q ss_pred             CCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          253 SKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      +++.+..+.+++.+++++|+|||++|.+..++.++++++++ |+++.+|........+++...++.|++++.|++.....
T Consensus       242 ~~~~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  320 (371)
T 1f8f_A          242 SKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGS  320 (371)
T ss_dssp             TTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSC
T ss_pred             CCccCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCCCCCc
Confidence            98866666677877779999999999987799999999997 99999997643344567777888899999998755433


Q ss_pred             CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEeC
Q 016660          333 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  384 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~~  384 (385)
                      ..++++++++++++|++++.+++++ |+|+++++||+.+++++.+|+||+++
T Consensus       321 ~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~~Kvvv~~~  371 (371)
T 1f8f_A          321 PKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGITLKPIIKIA  371 (371)
T ss_dssp             HHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSCSEEEEECC
T ss_pred             hHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCceEEEEeeC
Confidence            3467899999999999998888988 99999999999998887789999874

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=2.1e-61  Score=462.48  Aligned_cols=366  Identities=40%  Similarity=0.729  Sum_probs=309.9

Q ss_pred             CCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCC
Q 016660           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      .+||+|||+++.+++.++++.++|.|+|+++||+|||.+++||++|++++.|. +...+|.++|||++|+|+++|++|++
T Consensus         4 ~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~~~P~v~GhE~~G~V~~vG~~v~~   82 (376)
T 1e3i_A            4 GKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGVTN   82 (376)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCCCCCcccCccccEEEEEECCCCcc
Confidence            35789999999999877999999999999999999999999999999999886 44567999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCC----CCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCce
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP----FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~----~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~  167 (385)
                      |++||||++.+..+|+.|.+|+++++++|....    +..+.|...+|..++. .+|...+++...|+|+||++++++.+
T Consensus        83 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~  161 (376)
T 1e3i_A           83 FKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANL  161 (376)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             CCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccc-cCCcccccccCCccceeEEEeccccE
Confidence            999999999999999999999999999998643    1000132222211100 01111122223469999999999999


Q ss_pred             EECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC
Q 016660          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (385)
Q Consensus       168 ~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~  247 (385)
                      +++|+++++++||++++++.|||+++.+.++++++++|||+|+|++|++++|+||.+|+++|++++++++|+++++++|+
T Consensus       162 ~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa  241 (376)
T 1e3i_A          162 ARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA  241 (376)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             EECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence            99999999999999999999999988888899999999999999999999999999999789999999999999999999


Q ss_pred             CeEEeCCC--CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCC-ceEEEeccCCCCCcccccHHHHhhcCcEEE
Q 016660          248 TEFVNSKN--CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTIVLGVDQPGSQLSLSSFEVLHSGKILM  324 (385)
Q Consensus       248 ~~vv~~~~--~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  324 (385)
                      ++++|+++  .+..+.+++.+++++|+|||++|....++.+++++++ + |+++.+|..  ....+++...++.++ ++.
T Consensus       242 ~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~-~~G~iv~~G~~--~~~~~~~~~~~~~~~-~i~  317 (376)
T 1e3i_A          242 TDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVL-GWGSCTVVGAK--VDEMTIPTVDVILGR-SIN  317 (376)
T ss_dssp             SEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCT-TTCEEEECCCS--SSEEEEEHHHHHTTC-EEE
T ss_pred             cEEEccccccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhc-CCCEEEEECCC--CCccccCHHHhhccC-eEE
Confidence            99999875  3445557777777999999999998779999999999 6 999999973  345667777777788 999


Q ss_pred             EeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          325 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       325 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      |+....+...+++.++++++++|++++.++++++|+|+++++||+.+++++.+|++|++
T Consensus       318 g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~  376 (376)
T 1e3i_A          318 GTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTILTF  376 (376)
T ss_dssp             ECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCcceEEEeC
Confidence            98654443346789999999999998888999999999999999999888878999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3e-61  Score=461.10  Aligned_cols=367  Identities=42%  Similarity=0.764  Sum_probs=312.1

Q ss_pred             CCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeeccccccc-ccccCCCCCCCCccccCceeEEEEEeCCCCC
Q 016660           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVT-FWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~-~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      .++++|||+++.++++++++.++|.|+|+++||+|||.+++||++|++ ++.|.++ ..+|.++|||++|+|+++|++|+
T Consensus         4 ~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~V~   82 (374)
T 1cdo_A            4 GKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPGVT   82 (374)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTTCC
T ss_pred             CCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-CCCCcccCccceEEEEEECCCCc
Confidence            357899999999998779999999999999999999999999999999 8888655 56799999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      +|++||||++.+..+|+.|++|+++++++|.......+.|+..+|..++. .+|...+++...|+|+||++++++.++++
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~~  161 (374)
T 1cdo_A           83 EFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKI  161 (374)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEE-ETTEEEEEGGGTCCSBSEEEEEGGGEEEC
T ss_pred             cCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccc-cCCcccccccCCccceeEEEEchhheEEC
Confidence            99999999999999999999999999999986543211233222211110 11222222334579999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v  250 (385)
                      |+++++++||++++++.|||+++.+.++++++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++++
T Consensus       162 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v  241 (374)
T 1cdo_A          162 DPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDF  241 (374)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEE
T ss_pred             CCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceE
Confidence            99999999999999999999988888899999999999999999999999999999789999999999999999999999


Q ss_pred             EeCCC--CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCC-ceEEEeccCCCCCcccccHHHHhhcCcEEEEee
Q 016660          251 VNSKN--CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  327 (385)
Q Consensus       251 v~~~~--~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  327 (385)
                      +|+++  .+..+.+++.+++++|+|||++|....++.+++++++ + |+++.+|.... ...+++...++.++ ++.|+.
T Consensus       242 i~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~-~~~~~~~~~~~~~~-~i~g~~  318 (374)
T 1cdo_A          242 VNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLK-GWGVSVLVGWTDL-HDVATRPIQLIAGR-TWKGSM  318 (374)
T ss_dssp             ECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCSS-SCEEECHHHHHTTC-EEEECS
T ss_pred             EeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhc-CCcEEEEEcCCCC-CCcccCHHHHhcCC-eEEEEe
Confidence            99875  2345557777777999999999998779999999999 7 99999997543 34567777777778 999986


Q ss_pred             ecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          328 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      +..+...++++++++++++|++++.+++++.|+|+++++||+.+++++..|++|++
T Consensus       319 ~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  374 (374)
T 1cdo_A          319 FGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  374 (374)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             cCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCeeEEEEeC
Confidence            55443346789999999999998888899999999999999999988878999975

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=1.8e-61  Score=461.45  Aligned_cols=349  Identities=21%  Similarity=0.355  Sum_probs=306.5

Q ss_pred             CCCcCCCCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEe
Q 016660            6 PSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESV   85 (385)
Q Consensus         6 p~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~v   85 (385)
                      |-.....+|++|||+++.+++. +++.++|.|+|++|||+|||.|++||++|+++++|.+ ...+|.++|||++|+|+++
T Consensus        13 ~~~~~~~~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~-~~~~p~v~G~e~~G~V~~v   90 (370)
T 4ej6_A           13 LGTENLYFQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEF-PSTPPVTLGHEFCGIVVEA   90 (370)
T ss_dssp             --------CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSS-CCCSSEECCCSEEEEEEEE
T ss_pred             ccccccccchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCC-CCCCCeecCcceEEEEEEE
Confidence            3344456678899999999976 9999999999999999999999999999999999876 3467999999999999999


Q ss_pred             CCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC
Q 016660           86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (385)
Q Consensus        86 G~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~  165 (385)
                      |+++++|++||||++.+..+|+.|.+|+++.+++|.....   +|...+|                   +|+||++++++
T Consensus        91 G~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~  148 (370)
T 4ej6_A           91 GSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRA---IGIHRDG-------------------GFAEYVLVPRK  148 (370)
T ss_dssp             CTTCCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGG
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccc---cCCCCCC-------------------cceEEEEEchh
Confidence            9999999999999999999999999999999999987664   4555555                   99999999999


Q ss_pred             ceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc
Q 016660          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (385)
Q Consensus       166 ~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l  245 (385)
                      .++++|+++++++|| +..++.|||+++ +.+++++|++|||+|+|++|++++|+|+++|+++|+++++++++.++++++
T Consensus       149 ~~~~~P~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  226 (370)
T 4ej6_A          149 QAFEIPLTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV  226 (370)
T ss_dssp             GEEEECTTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             hEEECCCCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            999999999999998 556899999987 788999999999999999999999999999998899999999999999999


Q ss_pred             CCCeEEeCCCCCchhHHHH---hhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcE
Q 016660          246 GVTEFVNSKNCGDKSIIID---MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKI  322 (385)
Q Consensus       246 g~~~vv~~~~~~~~~~i~~---~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  322 (385)
                      |+++++|+++.+..+.+++   ++++++|+|||++|...+++.++++++++ |+++.+|........+++...++.++++
T Consensus       227 Ga~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~-G~vv~~G~~~~~~~~~~~~~~~~~~~~~  305 (370)
T 4ej6_A          227 GATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFRELR  305 (370)
T ss_dssp             TCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECSCCCTTCCCCCCHHHHHHTTCE
T ss_pred             CCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEeccCCCCccccCHHHHHhCCcE
Confidence            9999999988666666776   66679999999999988899999999997 9999999865545678888889999999


Q ss_pred             EEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe--eEEEEEeCC
Q 016660          323 LMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC--LRCVIWMGE  385 (385)
Q Consensus       323 i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~--~k~vi~~~~  385 (385)
                      +.|++..    ..+++++++++++|++++.++++++|+|+++++||+.+.+++.  .|+++++++
T Consensus       306 i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~~  366 (370)
T 4ej6_A          306 VLGSFIN----PFVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAER  366 (370)
T ss_dssp             EEECCSC----TTCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC---
T ss_pred             EEEeccC----hHHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEcccc
Confidence            9998643    2579999999999999999999999999999999999987763  488887753

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=3.1e-59  Score=442.79  Aligned_cols=340  Identities=22%  Similarity=0.354  Sum_probs=300.9

Q ss_pred             eeEEEeccCCCCcEEEEeecCC-CCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~-~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||+++.+++. +++.++|+|+ +++|||||||.|+|||++|++.+.+..+ ..+|.++|||++|+|+++|++|++|++|
T Consensus         1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~-~~~P~i~G~E~~G~V~~vG~~V~~~~~G   78 (346)
T 4a2c_A            1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGA-HYYPITLGHEFSGYIDAVGSGVDDLHPG   78 (346)
T ss_dssp             CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCS-SSSSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred             CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCC-CCCCccccEEEEEEEEEECCCcccccCC
Confidence            89999999987 9999999998 5799999999999999999998888654 4689999999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      |||++.+...|+.|.+|..+.+++|....+   .|...+|                   +|+||+++++++++++|++++
T Consensus        79 drV~~~~~~~~g~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~l~  136 (346)
T 4a2c_A           79 DAVACVPLLPCFTCPECLKGFYSQCAKYDF---IGSRRDG-------------------GFAEYIVVKRKNVFALPTDMP  136 (346)
T ss_dssp             CEEEECCEECCSCSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEEEGGGEEECCTTSC
T ss_pred             CeEEeeeccCCCCcccccCCccccCCCccc---ccCCCCc-------------------ccccccccchheEEECCCCCC
Confidence            999999999999999999999999987765   5666666                   999999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~  255 (385)
                      +++||+++ ++.++++ +....+++++++|||+|+|++|++++|+|+++|++.+++++++++|++++++||+++++|+++
T Consensus       137 ~~~aa~l~-~~~~~~~-~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~  214 (346)
T 4a2c_A          137 IEDGAFIE-PITVGLH-AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE  214 (346)
T ss_dssp             GGGGGGHH-HHHHHHH-HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHHHHhch-HHHHHHH-HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCC
Confidence            99999886 4445554 667889999999999999999999999999999988899999999999999999999999999


Q ss_pred             CCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcc-cccHHHHhhcCcEEEEeeecCCC-
Q 016660          256 CGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL-SLSSFEVLHSGKILMGSLFGGLK-  332 (385)
Q Consensus       256 ~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~i~g~~~~~~~-  332 (385)
                      .+..+.++.++++ ++|+|||++|.+.+++.++++++++ |+++.+|....+... ..+...++.|++++.|++..... 
T Consensus       215 ~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~  293 (346)
T 4a2c_A          215 MSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSP  293 (346)
T ss_dssp             SCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTT-CEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSS
T ss_pred             CCHHHHHHhhcccCCcccccccccccchhhhhhheecCC-eEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCc
Confidence            7766667778877 8999999999998899999999997 999999986544332 34455678899999998754322 


Q ss_pred             -CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          333 -AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       333 -~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                       ..++++++++++++|+++++++++++|+|+++++||+.+++++. +|+||.+
T Consensus       294 ~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P  346 (346)
T 4a2c_A          294 WPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP  346 (346)
T ss_dssp             TTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred             chHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence             24578999999999999999999999999999999999988775 5999864

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=2.5e-59  Score=442.21  Aligned_cols=336  Identities=27%  Similarity=0.405  Sum_probs=302.1

Q ss_pred             eeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        16 ~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      +|||+++++++.++++.++|.|+|++|||+|||.+++||++|+++++|.++. ..+|.++|||++|+|+++|+++++|++
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v   81 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE   81 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence            5999999999888999999999999999999999999999999999998764 568999999999999999999999999


Q ss_pred             CCEE-EecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           95 GDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        95 GdrV-~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      |||| +.++..+|+.|.+|+++++++|.....   .|+..+|                   +|+||++++++.++++|++
T Consensus        82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  139 (340)
T 3s2e_A           82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQN---TGYSVNG-------------------GYGEYVVADPNYVGLLPDK  139 (340)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEECCTT
T ss_pred             CCEEEecCCCCCCCCChHHhCcCcccCccccc---cCCCCCC-------------------cceeEEEechHHEEECCCC
Confidence            9999 566788999999999999999987664   4555555                   9999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++++||++++++.|||+++ +..+++++++|||+|+|++|++++|+|+.+|+ +|+++++++++.++++++|+++++|+
T Consensus       140 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~  217 (340)
T 3s2e_A          140 VGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNA  217 (340)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeC
Confidence            99999999999999999987 67799999999999999999999999999999 99999999999999999999999999


Q ss_pred             CCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      ++.+..+.+++ +.+++|+|||++|+...++.++++++++ |+++.+|...  ...+++...++.+++++.|+....   
T Consensus       218 ~~~~~~~~~~~-~~g~~d~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~i~g~~~~~---  290 (340)
T 3s2e_A          218 RDTDPAAWLQK-EIGGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPP--GDFGTPIFDVVLKGITIRGSIVGT---  290 (340)
T ss_dssp             TTSCHHHHHHH-HHSSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCS--SEEEEEHHHHHHTTCEEEECCSCC---
T ss_pred             CCcCHHHHHHH-hCCCCCEEEEeCCCHHHHHHHHHHhccC-CEEEEeCCCC--CCCCCCHHHHHhCCeEEEEEecCC---
Confidence            88666666666 4458999999999998899999999997 9999999754  456777788888999999986443   


Q ss_pred             CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          334 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                      .++++++++++++|++++.   .+.++|+++++||+.+++++. +|+||++++
T Consensus       291 ~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~Gkvvv~~~~  340 (340)
T 3s2e_A          291 RSDLQESLDFAAHGDVKAT---VSTAKLDDVNDVFGRLREGKVEGRVVLDFSR  340 (340)
T ss_dssp             HHHHHHHHHHHHTTSCCCC---EEEECGGGHHHHHHHHHTTCCCSEEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCCce---EEEEeHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            4689999999999987763   478899999999999998876 599999875

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=2.7e-59  Score=443.36  Aligned_cols=340  Identities=24%  Similarity=0.389  Sum_probs=289.1

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeeccccccccccc-CCC--CCCCCccccCceeEEEEEeCCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM-KDF--PAVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g-~~~--~~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      ++|||+++.+++.++++.++|.|+|+++||+|||.+++||++|++.++| .++  ...+|.++|||++|+|+++|++|++
T Consensus         3 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   82 (348)
T 2d8a_A            3 EKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEG   82 (348)
T ss_dssp             CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCCc
Confidence            4699999999984599999999999999999999999999999999988 432  2467999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      |++||||++.+..+|+.|.+|++|++++|.....   +|...+|                   +|+||++++++.++++|
T Consensus        83 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP  140 (348)
T 2d8a_A           83 IEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------VFAEYAVVPAQNIWKNP  140 (348)
T ss_dssp             CCTTCEEEECCEECCSCCC------------CEE---TTTSSCC-------------------SSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe---ecCCCCC-------------------cCcceEEeChHHeEECC
Confidence            9999999999999999999999999999986654   4444444                   99999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv  251 (385)
                      +++++++||+++ ++.|||+++ +.+++ ++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|+++++
T Consensus       141 ~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~  217 (348)
T 2d8a_A          141 KSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVI  217 (348)
T ss_dssp             TTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEE
T ss_pred             CCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE
Confidence            999999999886 788999987 67888 999999999999999999999999996799999999999999999999999


Q ss_pred             eCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccH-HHHhhcCcEEEEeeec
Q 016660          252 NSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS-FEVLHSGKILMGSLFG  329 (385)
Q Consensus       252 ~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~i~g~~~~  329 (385)
                      ++++.+..+.+++.+++ ++|+|||++|....++.++++++++ |+++.+|....  ...++. ..++.+++++.|+...
T Consensus       218 ~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~~i~g~~~~  294 (348)
T 2d8a_A          218 NPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPG--KVTIDFNNLIIFKALTIYGITGR  294 (348)
T ss_dssp             CTTTSCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCSS--CCCCCHHHHTTTTTCEEEECCCC
T ss_pred             CCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC--CcccCchHHHHhCCcEEEEecCC
Confidence            99876666668888887 8999999999977799999999997 99999997542  456666 6778899999998533


Q ss_pred             CCCCCCcHHHHHHHHHcCCCCCCCceeeeee-cchHHHHHHHHhcCCeeEEEEEeC
Q 016660          330 GLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGKCLRCVIWMG  384 (385)
Q Consensus       330 ~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~-l~~~~~a~~~l~~~~~~k~vi~~~  384 (385)
                      .  ..++++++++++++|++++.++++++|+ |+++++||+.++++..+|+||+++
T Consensus       295 ~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~gKvvi~~~  348 (348)
T 2d8a_A          295 H--LWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVFMLK  348 (348)
T ss_dssp             C--SHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHTTCCSEEEEEC-
T ss_pred             C--cHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhCCCceEEEEeeC
Confidence            2  1467899999999999888999999999 999999999998765679999864

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.3e-59  Score=445.34  Aligned_cols=346  Identities=25%  Similarity=0.390  Sum_probs=292.5

Q ss_pred             CCCCCCCCcCCCCCeeeeEEEeccCCCCcEEEEeecCC-CCCCeEEEEEeeeecccccccccccCCC---CCCCCccccC
Q 016660            1 MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGH   76 (385)
Q Consensus         1 ~~~~~p~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~p~-~~~~eVlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~   76 (385)
                      |-++|+-..+. .+++|||+++.++++++++.++|.|+ |++|||+|||.+++||++|++.++|.++   ...+|.++||
T Consensus         1 ~~~~~~~~~~~-~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~   79 (359)
T 1h2b_A            1 MRIEQDFSQSL-GVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGH   79 (359)
T ss_dssp             -----------------CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCC
T ss_pred             CchhhhhhhcC-ChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCc
Confidence            44566665542 35679999999998679999999999 9999999999999999999999988764   3467999999


Q ss_pred             ceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccce
Q 016660           77 EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF  156 (385)
Q Consensus        77 e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~  156 (385)
                      |++|+|+++|++|++|++||||+..+..+|+.|.+|+++++++|.....   +|...+|                   +|
T Consensus        80 E~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~  137 (359)
T 1h2b_A           80 ENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GF  137 (359)
T ss_dssp             CEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SS
T ss_pred             CceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc---cccCCCC-------------------cc
Confidence            9999999999999999999999999999999999999999999986654   4444444                   99


Q ss_pred             eeeEeeccCceEECCCCCCccccc---ccccchhhhhhhhhhh-ccCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEE
Q 016660          157 SEYTVLDIAHVVKVDPTVPPNRAC---LLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIG  231 (385)
Q Consensus       157 ~~~v~v~~~~~~~iP~~l~~~~aa---~l~~~~~ta~~al~~~-~~~~~~~~VlI~G~g~vG~~ai~la~~~-G~~~vi~  231 (385)
                      +||+++++++++++|+++++++||   .+++++.|||+++.+. ++++++++|||+|+|++|++++|+||.+ |+ +|++
T Consensus       138 aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~  216 (359)
T 1h2b_A          138 AEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIA  216 (359)
T ss_dssp             BSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEE
T ss_pred             cceEEechHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEE
Confidence            999999999999999999999999   7888899999987665 8999999999999999999999999999 99 8999


Q ss_pred             EcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChH--HHHHHHHHhccCCceEEEeccCCCCCc
Q 016660          232 VDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLAS--LVQEAYACCRKGWGKTIVLGVDQPGSQ  308 (385)
Q Consensus       232 ~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~~~~  308 (385)
                      ++++++|+++++++|+++++|+++. ..+.+++++++ ++|+|||++|++.  .++.++++  ++ |+++.+|.....  
T Consensus       217 ~~~~~~~~~~~~~lGa~~vi~~~~~-~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~-G~~v~~g~~~~~--  290 (359)
T 1h2b_A          217 LDVKEEKLKLAERLGADHVVDARRD-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RM-GRLIIVGYGGEL--  290 (359)
T ss_dssp             EESSHHHHHHHHHTTCSEEEETTSC-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EE-EEEEECCCSSCC--
T ss_pred             EeCCHHHHHHHHHhCCCEEEeccch-HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CC-CEEEEEeCCCCC--
Confidence            9999999999999999999999885 55557788877 8999999999986  68888888  75 999999975422  


Q ss_pred             ccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          309 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       309 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                       .++...++.+++++.|+....   .+++.++++++++|++.+  .+ ++|+|+++++||+.+++++. +|+||++
T Consensus       291 -~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~--~i-~~~~l~~~~~A~~~~~~~~~~gKvvv~~  359 (359)
T 1h2b_A          291 -RFPTIRVISSEVSFEGSLVGN---YVELHELVTLALQGKVRV--EV-DIHKLDEINDVLERLEKGEVLGRAVLIP  359 (359)
T ss_dssp             -CCCHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSCCC--CE-EEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             -CCCHHHHHhCCcEEEEecCCC---HHHHHHHHHHHHcCCCcc--eE-EEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence             667777888999999986432   467999999999997654  47 99999999999999988875 6999874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=7.2e-59  Score=441.62  Aligned_cols=338  Identities=22%  Similarity=0.346  Sum_probs=296.0

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCC-C--CCCCCccccCceeEEEEEeCCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-F--PAVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~--~~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      |+|||+++.+++. +++.++|.|+|+++||+|||.+++||++|++.+++.. .  ...+|.++|||++|+|+++|++|++
T Consensus         6 ~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~~   84 (356)
T 1pl8_A            6 PNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKH   84 (356)
T ss_dssp             CCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCS
T ss_pred             cCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCCC
Confidence            5699999999875 9999999999999999999999999999999887532 1  1357899999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      |++||||++.+..+|+.|.+|++|++++|....+   .|.. .+                   |+|+||++++++.++++
T Consensus        85 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~-------------------G~~aey~~v~~~~~~~i  142 (356)
T 1pl8_A           85 LKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDD-------------------GNLCRFYKHNAAFCYKL  142 (356)
T ss_dssp             CCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBC-------------------CSCBSEEEEEGGGEEEC
T ss_pred             CCCCCEEEEeccCCCCCChHHHCcCcccCCCccc---cCcCCCC-------------------CccccEEEeehHHEEEC
Confidence            9999999999999999999999999999986554   3331 23                   39999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v  250 (385)
                      |+++++++||++ .++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++
T Consensus       143 P~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v  220 (356)
T 1pl8_A          143 PDNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLV  220 (356)
T ss_dssp             CTTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEE
T ss_pred             cCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE
Confidence            999999999877 4788999987 77899999999999999999999999999999889999999999999999999999


Q ss_pred             EeCCC---CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEee
Q 016660          251 VNSKN---CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  327 (385)
Q Consensus       251 v~~~~---~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  327 (385)
                      +++++   .+..+.+++.+++++|+|||++|.+..++.++++++++ |+++.+|...  ....++...++.+++++.|+.
T Consensus       221 i~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~i~g~~  297 (356)
T 1pl8_A          221 LQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGS--EMTTVPLLHAAIREVDIKGVF  297 (356)
T ss_dssp             EECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCC--SCCCCCHHHHHHTTCEEEECC
T ss_pred             EcCcccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEecCC--CCCccCHHHHHhcceEEEEec
Confidence            99872   23333466666568999999999987799999999997 9999999743  345677778888999999985


Q ss_pred             ecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEeC
Q 016660          328 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  384 (385)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~~  384 (385)
                      ..    .+++.++++++++|++++.++++++|+|+++++||+.++++..+|+||+++
T Consensus       298 ~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~~  350 (356)
T 1pl8_A          298 RY----CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCD  350 (356)
T ss_dssp             SC----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEECC
T ss_pred             cc----HHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCCCceEEEEeCC
Confidence            32    468999999999999988889999999999999999998885569999875

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.2e-58  Score=437.75  Aligned_cols=338  Identities=25%  Similarity=0.382  Sum_probs=296.6

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccC-CC--CCCCCccccCceeEEEEEeCCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DF--PAVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~-~~--~~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      ++|||+++.+++. +++.++|.|+|+++||+|||.+++||++|++.+.+. ..  ...+|.++|||++|+|+++|++|++
T Consensus         3 ~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (352)
T 1e3j_A            3 SDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKH   81 (352)
T ss_dssp             -CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCS
T ss_pred             ccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCC
Confidence            5699999999875 999999999999999999999999999999988743 22  1357999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      |++||||++.+..+|+.|.+|+++.+++|....+   .|.. .+                   |+|+||+++++++++++
T Consensus        82 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~-------------------G~~aey~~v~~~~~~~i  139 (352)
T 1e3j_A           82 LKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF---CATPPDD-------------------GNLARYYVHAADFCHKL  139 (352)
T ss_dssp             CCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---TTBTTBC-------------------CSCBSEEEEEGGGEEEC
T ss_pred             CCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc---cCcCCCC-------------------ccceeEEEeChHHeEEC
Confidence            9999999999999999999999999999987654   3332 23                   49999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v  250 (385)
                      |+++++++||++ .++.|||+++ +.++++++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++++
T Consensus       140 P~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~  216 (352)
T 1e3j_A          140 PDNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVT  216 (352)
T ss_dssp             CTTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEE
T ss_pred             cCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEE
Confidence            999999999877 4788999987 77899999999999999999999999999999 69999999999999999999999


Q ss_pred             EeCCC-CCchhHHHHhhC---C-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEE
Q 016660          251 VNSKN-CGDKSIIIDMTD---G-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  325 (385)
Q Consensus       251 v~~~~-~~~~~~i~~~~~---g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  325 (385)
                      +++++ .+..+.+++.++   + ++|+|||++|....++.++++++++ |+++.+|...  ...+++...++.+++++.|
T Consensus       217 ~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~i~g  293 (352)
T 1e3j_A          217 LVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGS--QMVTVPLVNACAREIDIKS  293 (352)
T ss_dssp             EECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCS--SCCCCCHHHHHTTTCEEEE
T ss_pred             EcCcccccHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC--CCccccHHHHHhcCcEEEE
Confidence            99884 556666777775   4 8999999999987799999999997 9999999743  3456777788889999999


Q ss_pred             eeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC--eeEEEEEeCC
Q 016660          326 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVIWMGE  385 (385)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~--~~k~vi~~~~  385 (385)
                      +...    .++++++++++++|+++++++++++|+|+++++||+.+.+++  .+|+||++++
T Consensus       294 ~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  351 (352)
T 1e3j_A          294 VFRY----CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ  351 (352)
T ss_dssp             CCSC----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECCC
T ss_pred             eccc----hHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence            8532    468999999999999988889999999999999999998876  4699998864

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=6.9e-59  Score=443.07  Aligned_cols=339  Identities=23%  Similarity=0.319  Sum_probs=296.4

Q ss_pred             CCeeeeEEEeccCCCCcEEEEeecC--------CCCCCeEEEEEeeeecccccccccccCC-C--CCCCCccccCceeEE
Q 016660           13 KPIQCRAAIATAPGEPLVIDEVIVD--------PPNSHEVRVRIICTSLCHSDVTFWKMKD-F--PAVFPRILGHEAIGV   81 (385)
Q Consensus        13 ~~~~~~a~~~~~~~~~l~~~~~~~p--------~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~--~~~~p~~~G~e~~G~   81 (385)
                      ++++|||+++.+++. +++.++|.|        +|+++||||||.+++||++|++++++.. .  ...+|.++|||++|+
T Consensus         5 ~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~   83 (363)
T 3m6i_A            5 ASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGE   83 (363)
T ss_dssp             CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEE
T ss_pred             CcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEE
Confidence            457799999999887 999999999        9999999999999999999999887432 1  246799999999999


Q ss_pred             EEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCcccccccCCceeeccccccceeeeE
Q 016660           82 VESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYT  160 (385)
Q Consensus        82 V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~v  160 (385)
                      |+++|++|++|++||||++.+..+|+.|.+|++|.++.|....+   .|.. .+|                   +|+||+
T Consensus        84 V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~~G-------------------~~aey~  141 (363)
T 3m6i_A           84 VIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDF---LSTPPVPG-------------------LLRRYV  141 (363)
T ss_dssp             EEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTSTTSCC-------------------SCBSEE
T ss_pred             EEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccc---cCCCCCCc-------------------cceeEE
Confidence            99999999999999999999999999999999999999987664   3332 333                   999999


Q ss_pred             eeccCceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH
Q 016660          161 VLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (385)
Q Consensus       161 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  240 (385)
                      +++++.++++|+ +++++||++. ++.|||+++ +.+++++|++|||+|+|++|++++|+||.+|+++|++++++++|++
T Consensus       142 ~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  218 (363)
T 3m6i_A          142 NHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLK  218 (363)
T ss_dssp             EEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHH
T ss_pred             EEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            999999999999 9999999885 788999987 7889999999999999999999999999999966999999999999


Q ss_pred             HHHHcCCCeEEeCCC-----CCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHH
Q 016660          241 IGKRFGVTEFVNSKN-----CGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF  314 (385)
Q Consensus       241 ~~~~lg~~~vv~~~~-----~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~  314 (385)
                      +++++ +++++++.-     .+..+.+++.+++ ++|+|||++|++.+++.++++++++ |+++.+|...  ....++..
T Consensus       219 ~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~  294 (363)
T 3m6i_A          219 FAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGVGK--NEIQIPFM  294 (363)
T ss_dssp             HHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECCCCC--SCCCCCHH
T ss_pred             HHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEccCC--CCccccHH
Confidence            99999 766666541     1233347788877 9999999999997799999999997 9999999754  33557777


Q ss_pred             HHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcC-C-eeEEEEEeCC
Q 016660          315 EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG-K-CLRCVIWMGE  385 (385)
Q Consensus       315 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~-~-~~k~vi~~~~  385 (385)
                      .++.+++++.|+...    .++++++++++++|++++.+++++.|+|+++++||+.++++ . .+|++|+.+|
T Consensus       295 ~~~~~~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  363 (363)
T 3m6i_A          295 RASVREVDLQFQYRY----CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSLE  363 (363)
T ss_dssp             HHHHHTCEEEECCSC----SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEECC-
T ss_pred             HHHhcCcEEEEccCC----HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence            888899999998633    57899999999999999999999999999999999999886 3 3599999875

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1.1e-58  Score=439.88  Aligned_cols=343  Identities=24%  Similarity=0.313  Sum_probs=298.8

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeeccccccc-ccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVT-FWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~-~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||+++.++++ +++.++|.|+|+++||+|||.+++||++|++ ++.|.++ ..+|.++|||++|+|+++|++|++|++|
T Consensus         1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~vG   78 (352)
T 3fpc_A            1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG-ERHNMILGHEAVGEVVEVGSEVKDFKPG   78 (352)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTC-CCSSEECCCEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCC-CCCCcccCCcceEEEEEECCCCCcCCCC
Confidence            79999999998 9999999999999999999999999999999 5577654 3679999999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccC--ceEECCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~--~~~~iP~~  173 (385)
                      |||++.+..+|+.|.+|++++.++|.........|...+                   |+|+||++++++  .++++|++
T Consensus        79 drV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~-------------------G~~aey~~v~~~~~~~~~iP~~  139 (352)
T 3fpc_A           79 DRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKD-------------------GVFGEFFHVNDADMNLAHLPKE  139 (352)
T ss_dssp             CEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBC-------------------CSSBSCEEESSHHHHCEECCTT
T ss_pred             CEEEEccccCCCCchhhcCCCcCCccccccccccccCCC-------------------CcccceEEeccccCeEEECCCC
Confidence            999999999999999999999998865432111222233                   499999999976  89999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++++||++++++.|||+++ +.++++++++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++++
T Consensus       140 ~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~  218 (352)
T 3fpc_A          140 IPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINY  218 (352)
T ss_dssp             SCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECG
T ss_pred             CCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcC
Confidence            99999999999999999987 78899999999999999999999999999999789999999999999999999999999


Q ss_pred             CCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHH--HhhcCcEEEEeeecC
Q 016660          254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE--VLHSGKILMGSLFGG  330 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~--~~~~~~~i~g~~~~~  330 (385)
                      ++.+..+.+++.+++ ++|+|||++|++.+++.++++++++ |+++.+|.......++++...  +..+++++.|+....
T Consensus       219 ~~~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  297 (352)
T 3fpc_A          219 KNGDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPG  297 (352)
T ss_dssp             GGSCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCC
T ss_pred             CCcCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEecccCCCCceecchhHhhhhccccEEEEeeccC
Confidence            887777778899988 8999999999987799999999997 999999986544444444332  335788888875322


Q ss_pred             CCCCCcHHHHHHHHHcCCCCCCCceeeeee-cchHHHHHHHHhcCCe--eEEEEEeC
Q 016660          331 LKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGKC--LRCVIWMG  384 (385)
Q Consensus       331 ~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~-l~~~~~a~~~l~~~~~--~k~vi~~~  384 (385)
                        ..++++++++++++|++++.++++++|+ |+++++||+.++++..  +|+||+++
T Consensus       298 --~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~  352 (352)
T 3fpc_A          298 --GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA  352 (352)
T ss_dssp             --HHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred             --chhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence              2357999999999999999999999999 9999999999987643  59999874

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=1.1e-58  Score=438.32  Aligned_cols=338  Identities=24%  Similarity=0.358  Sum_probs=299.2

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC---CCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++.++++++++.++|.|+|++|||+|||.+++||++|++++.|.++   ...+|.++|||++|+|+++|++|++|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ   80 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence            79999999987799999999999999999999999999999999988654   246799999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||||++.+..+|+.|++|++|++++|.....   +|...+|                   +|+||++++++.++++|++
T Consensus        81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  138 (343)
T 2dq4_A           81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQI---LGVDRDG-------------------GFAEYVVVPAENAWVNPKD  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGEEEECTT
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCcce---ecCCCCC-------------------cceeEEEEchHHeEECCCC
Confidence            99999999999999999999999999986553   3443344                   9999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++++||++. ++.|||+++.+.+++ ++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++ +++++++
T Consensus       139 ~~~~~aa~~~-~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~  215 (343)
T 2dq4_A          139 LPFEVAAILE-PFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNP  215 (343)
T ss_dssp             SCHHHHTTHH-HHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECT
T ss_pred             CCHHHHHhhh-HHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCc
Confidence            9999999884 778999988547889 999999999999999999999999996799999999999999999 9999999


Q ss_pred             CCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccH-HHHhhcCcEEEEeeecCCC
Q 016660          254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS-FEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~  332 (385)
                      ++.+..+.+++.+++++|+|||++|....++.++++++++ |+++.+|...  ....++. ..++.+++++.|+....  
T Consensus       216 ~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~--~~~~~~~~~~~~~~~~~i~g~~~~~--  290 (343)
T 2dq4_A          216 LEEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPS--DPIRFDLAGELVMRGITAFGIAGRR--  290 (343)
T ss_dssp             TTSCHHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCS--SCEEECHHHHTGGGTCEEEECCSCC--
T ss_pred             CccCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC--CCceeCcHHHHHhCceEEEEeecCC--
Confidence            8766666677777338999999999977799999999997 9999999753  3456777 77888999999985431  


Q ss_pred             CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEeC
Q 016660          333 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  384 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~~  384 (385)
                      ..++++++++++++|+++++++++++|+|+++++||+.+++++.+|+||+++
T Consensus       291 ~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvv~~~~  342 (343)
T 2dq4_A          291 LWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVILDPK  342 (343)
T ss_dssp             TTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSCSEEEEETT
T ss_pred             CHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCceEEEEeeC
Confidence            2467999999999999888899999999999999999998877789999875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=3.4e-58  Score=435.73  Aligned_cols=340  Identities=20%  Similarity=0.297  Sum_probs=290.0

Q ss_pred             CeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        14 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      +|+|||+++.++++++++.++|.|+|+++||+|||.+++||++|+++++|.++...+|.++|||++|+|+++|++|++|+
T Consensus         2 ~m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~   81 (348)
T 3two_A            2 RVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFK   81 (348)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             ceEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCCC
Confidence            47899999999988899999999999999999999999999999999999877678899999999999999999999999


Q ss_pred             CCCEEEecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCC
Q 016660           94 EGDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (385)
Q Consensus        94 ~GdrV~~~~-~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~  172 (385)
                      +||||++.+ ..+|+.|.+|+++++++|. ...   .|+..+...    ..     +....|+|+||++++++.++++|+
T Consensus        82 vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~---~~~~~~~~~----~~-----~~~~~G~~aey~~v~~~~~~~iP~  148 (348)
T 3two_A           82 IGDVVGVGCFVNSCKACKPCKEHQEQFCT-KVV---FTYDCLDSF----HD-----NEPHMGGYSNNIVVDENYVISVDK  148 (348)
T ss_dssp             TTCEEEECSEEECCSCSHHHHTTCGGGCT-TCE---ESSSSEEGG----GT-----TEECCCSSBSEEEEEGGGCEECCT
T ss_pred             CCCEEEEeCCcCCCCCChhHhCCCcccCc-ccc---ccccccccc----cc-----CCcCCccccceEEechhhEEECCC
Confidence            999998866 4789999999999999998 322   222221000    00     011225999999999999999999


Q ss_pred             CCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      ++++++||++++++.|||+++. ..++++|++|||+|+|++|++++|+|+.+|+ +|+++++++++.++++++|+++++ 
T Consensus       149 ~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~-  225 (348)
T 3two_A          149 NAPLEKVAPLLCAGITTYSPLK-FSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY-  225 (348)
T ss_dssp             TSCHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE-
T ss_pred             CCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec-
Confidence            9999999999999999999874 5699999999999999999999999999999 899999999999999999999988 


Q ss_pred             CCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCccc-ccHHHHh-hcCcEEEEeeecC
Q 016660          253 SKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVL-HSGKILMGSLFGG  330 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~-~~~~~i~g~~~~~  330 (385)
                      .+. .   .+    ..++|+|||++|+...++.++++++++ |+++.+|.... .... ++...++ .+++++.|+....
T Consensus       226 ~~~-~---~~----~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~i~g~~~~~  295 (348)
T 3two_A          226 TDP-K---QC----KEELDFIISTIPTHYDLKDYLKLLTYN-GDLALVGLPPV-EVAPVLSVFDFIHLGNRKVYGSLIGG  295 (348)
T ss_dssp             SSG-G---GC----CSCEEEEEECCCSCCCHHHHHTTEEEE-EEEEECCCCCG-GGCCEEEHHHHHHTCSCEEEECCSCC
T ss_pred             CCH-H---HH----hcCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEECCCCC-CCcccCCHHHHHhhCCeEEEEEecCC
Confidence            222 1   11    117999999999996699999999997 99999997531 3344 6767777 8999999986543


Q ss_pred             CCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          331 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       331 ~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                         .+++.++++++++|++++.  + +.|+|+++++||+.+.+++. +|+||++++
T Consensus       296 ---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvVi~~~~  345 (348)
T 3two_A          296 ---IKETQEMVDFSIKHNIYPE--I-DLILGKDIDTAYHNLTHGKAKFRYVIDMKK  345 (348)
T ss_dssp             ---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCCSEEEEEGGG
T ss_pred             ---HHHHHHHHHHHHhCCCCce--E-EEEEHHHHHHHHHHHHcCCCceEEEEecCC
Confidence               3679999999999987763  4 79999999999999998886 699999863

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=4.6e-58  Score=434.42  Aligned_cols=337  Identities=25%  Similarity=0.384  Sum_probs=294.8

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC--CCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      |||++++++++++++.++|.|+|++|||+|||.+++||++|+++++|.+..  ..+|.++|||++|+|+++|++|++|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   80 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV   80 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence            799999999988999999999999999999999999999999999887542  567999999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCC--CCCCCCCCCcccccccCCceeeccccccceeeeEeec-cCceEECC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFK--ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVVKVD  171 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~--~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~-~~~~~~iP  171 (385)
                      ||||++.+..+|+.|.+|+++++++|......  ...|...+                   |+|+||++++ ++.++++|
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~~~~p  141 (345)
T 3jv7_A           81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSP-------------------GSMAEYMIVDSARHLVPIG  141 (345)
T ss_dssp             TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBC-------------------CSSBSEEEESCGGGEEECT
T ss_pred             CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCC-------------------ceeeEEEEecchhceEeCC
Confidence            99999999999999999999999999432210  11233333                   4999999999 99999999


Q ss_pred             CCCCcccccccccchhhhhhhhhh-hccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~-~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v  250 (385)
                      + +++++||++++++.|||+++.+ ..+++++++|||+|+|++|++++|+|+.+|..+|++++++++|+++++++|++++
T Consensus       142 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~  220 (345)
T 3jv7_A          142 D-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAA  220 (345)
T ss_dssp             T-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEE
T ss_pred             C-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence            9 9999999999999999998866 4589999999999999999999999999954499999999999999999999999


Q ss_pred             EeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeec
Q 016660          251 VNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  329 (385)
Q Consensus       251 v~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  329 (385)
                      +++++ +..+.+++++++ ++|+|||++|++..++.++++++++ |+++.+|.... ...+++. .++.+++++.++...
T Consensus       221 i~~~~-~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~-~~~~~~~~i~g~~~~  296 (345)
T 3jv7_A          221 VKSGA-GAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAG-AHAKVGF-FMIPFGASVVTPYWG  296 (345)
T ss_dssp             EECST-THHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCTT-CCEEEST-TTSCTTCEEECCCSC
T ss_pred             EcCCC-cHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCC-CCCCcCH-HHHhCCCEEEEEecC
Confidence            99877 555668888888 9999999999997799999999997 99999997643 2445554 677889999998643


Q ss_pred             CCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          330 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       330 ~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      .   .++++++++++++|++++   +++.|+|+++++||+.+.+++. +|+||.+
T Consensus       297 ~---~~~~~~~~~l~~~g~l~~---~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p  345 (345)
T 3jv7_A          297 T---RSELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLREGSIRGRGVVVP  345 (345)
T ss_dssp             C---HHHHHHHHHHHHTTCCCC---CEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred             C---HHHHHHHHHHHHcCCCce---EEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence            3   468999999999998876   3589999999999999998876 5999864

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=2.8e-57  Score=427.85  Aligned_cols=335  Identities=27%  Similarity=0.399  Sum_probs=294.7

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||+++++++.++++.++|.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|++|
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG   80 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence            799999999866999999999999999999999999999999999887652 4679999999999999999999999999


Q ss_pred             CEEEecCCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           96 DVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        96 drV~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      |||++.+.. +|+.|++|+++++++|.....   .|...+|                   +|+||++++++.++++|+++
T Consensus        81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~~P~~~  138 (339)
T 1rjw_A           81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDNL  138 (339)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTTS
T ss_pred             CEEEEecCCCCCCCCchhhCcCcccCCCcce---eecCCCC-------------------cceeeEEechHHEEECCCCC
Confidence            999987754 599999999999999986554   3444444                   99999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      ++++||++++++.|||+++.+ .+++++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++|+.
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~  216 (339)
T 1rjw_A          139 SFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPL  216 (339)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTT
T ss_pred             CHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCC
Confidence            999999999999999998754 489999999999998899999999999999 999999999999999999999999988


Q ss_pred             CCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCC
Q 016660          255 NCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAK  334 (385)
Q Consensus       255 ~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~  334 (385)
                      +.+..+.+++.+ +++|+|||++|....++.++++++++ |+++.+|...  ...+++...++.+++++.|+....   .
T Consensus       217 ~~~~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~i~g~~~~~---~  289 (339)
T 1rjw_A          217 KEDAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPP--EEMPIPIFDTVLNGIKIIGSIVGT---R  289 (339)
T ss_dssp             TSCHHHHHHHHH-SSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCS--SEEEEEHHHHHHTTCEEEECCSCC---H
T ss_pred             CccHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEecccC--CCCccCHHHHHhCCcEEEEeccCC---H
Confidence            755555566666 68999999999977799999999997 9999999754  235677777888999999985432   3


Q ss_pred             CcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          335 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       335 ~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                      ++++++++++++|++++.   +++|+|+++++||+.+++++. +|+||++++
T Consensus       290 ~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  338 (339)
T 1rjw_A          290 KDLQEALQFAAEGKVKTI---IEVQPLEKINEVFDRMLKGQINGRVVLTLED  338 (339)
T ss_dssp             HHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCcc---EEEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            679999999999987664   479999999999999988764 699999864

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.4e-57  Score=436.23  Aligned_cols=349  Identities=25%  Similarity=0.344  Sum_probs=296.6

Q ss_pred             CCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCC--
Q 016660           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD--   90 (385)
Q Consensus        13 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~--   90 (385)
                      +..+|||+++.++++++++.++|.|+|+++||||||.+++||++|++++.|.++...+|.++|||++|+|+++| +|+  
T Consensus        14 ~~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V~~~   92 (380)
T 1vj0_A           14 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GEKRD   92 (380)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SCCBC
T ss_pred             hhhheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Ccccc
Confidence            44679999999998559999999999999999999999999999999999876545679999999999999999 999  


Q ss_pred             ----CCCCCCEEEecCCCCCCCCcccc-CCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEee-cc
Q 016660           91 ----GVVEGDVVIPHFLADCTECVGCR-SKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVL-DI  164 (385)
Q Consensus        91 ----~~~~GdrV~~~~~~~~~~~~~c~-~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v-~~  164 (385)
                          +|++||||++.+..+|+.|++|+ ++++++|.....   +|.....        +   .+....|+|+||+++ ++
T Consensus        93 ~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~---~g~~~~~--------~---~~~~~~G~~aey~~v~~~  158 (380)
T 1vj0_A           93 LNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGC--------S---EYPHLRGCYSSHIVLDPE  158 (380)
T ss_dssp             TTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCS--------S---STTCCCSSSBSEEEECTT
T ss_pred             ccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce---ecccccc--------C---CCCCCCccccceEEEccc
Confidence                99999999999999999999999 999999986543   2321000        0   000112499999999 99


Q ss_pred             CceEECCCCCCcc-cccccccchhhhhhhhhhhcc-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH
Q 016660          165 AHVVKVDPTVPPN-RACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (385)
Q Consensus       165 ~~~~~iP~~l~~~-~aa~l~~~~~ta~~al~~~~~-~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  242 (385)
                      +.++++|++++++ +||+++ ++.|||+++ +.++ +++|++|||+|+|++|++++|+|+.+|+.+|+++++++++++++
T Consensus       159 ~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~  236 (380)
T 1vj0_A          159 TDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA  236 (380)
T ss_dssp             CCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH
T ss_pred             ceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHH
Confidence            9999999999999 677666 999999988 6678 99999999999999999999999999944899999999999999


Q ss_pred             HHcCCCeEEeCC---CCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHH-Hh
Q 016660          243 KRFGVTEFVNSK---NCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE-VL  317 (385)
Q Consensus       243 ~~lg~~~vv~~~---~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~  317 (385)
                      +++|++++++++   +.+..+.+++.+++ ++|+|||++|.+..++.++++++++ |+++.+|........+++... ++
T Consensus       237 ~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~  315 (380)
T 1vj0_A          237 EEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLV  315 (380)
T ss_dssp             HHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTT
T ss_pred             HHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCCCCeeEchHHHHH
Confidence            999999999987   43344457788887 8999999999877799999999997 999999975412245677777 88


Q ss_pred             hcCcEEEEeeecCCCCCCcHHHHHHHHHc--CCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEeC
Q 016660          318 HSGKILMGSLFGGLKAKSDIPILLKRYMD--KELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  384 (385)
Q Consensus       318 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~~  384 (385)
                      .+++++.|++...   .++++++++++++  |++  +++++++|+|+++++||+.+++++..|+||+++
T Consensus       316 ~~~~~i~g~~~~~---~~~~~~~~~l~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvl~~~  379 (380)
T 1vj0_A          316 LKNATFKGIWVSD---TSHFVKTVSITSRNYQLL--SKLITHRLPLKEANKALELMESREALKVILYPE  379 (380)
T ss_dssp             TTTCEEEECCCCC---HHHHHHHHHHHHTCHHHH--GGGCCEEEEGGGHHHHHHHHHHTSCSCEEEECC
T ss_pred             hCCeEEEEeecCC---HHHHHHHHHHHHhhcCCe--eeEEEEEEeHHHHHHHHHHHhcCCCceEEEEeC
Confidence            8999999986432   4679999999999  966  667889999999999999998765449999875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-56  Score=423.10  Aligned_cols=341  Identities=22%  Similarity=0.333  Sum_probs=296.6

Q ss_pred             CCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCC
Q 016660           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        13 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      +|.+|||+++++++.++++.++|.|+|+++||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+++|++|++
T Consensus         2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (347)
T 2hcy_A            2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG   81 (347)
T ss_dssp             CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence            4567999999999866999999999999999999999999999999999887642 467999999999999999999999


Q ss_pred             CCCCCEEEecCCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           92 VVEGDVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        92 ~~~GdrV~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      |++||||++.+.. +|+.|.+|+++++++|.....   .|...+|                   +|+||++++++.++++
T Consensus        82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~i  139 (347)
T 2hcy_A           82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL---SGYTHDG-------------------SFQQYATADAVQAAHI  139 (347)
T ss_dssp             CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEETTTSEEE
T ss_pred             CcCCCEEEEecCCCCCCCChhhhCCCcccCccccc---cccCCCC-------------------cceeEEEeccccEEEC
Confidence            9999999987754 599999999999999986553   3444444                   9999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~  249 (385)
                      |+++++++||++++++.|||+++.+ .+++++++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.++++|+++
T Consensus       140 P~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~  217 (347)
T 2hcy_A          140 PQGTDLAQVAPILCAGITVYKALKS-ANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEV  217 (347)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHT-TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCE
T ss_pred             CCCCCHHHHHHHhhhHHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCce
Confidence            9999999999999999999998744 58999999999998 9999999999999999 8999999999999999999999


Q ss_pred             EEeCCC-CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeee
Q 016660          250 FVNSKN-CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  328 (385)
Q Consensus       250 vv~~~~-~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  328 (385)
                      ++|+.+ .+....+.+.+.+++|++||++|....++.++++++++ |+++.+|... ....+++...++.+++++.|+..
T Consensus       218 ~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~-~~~~~~~~~~~~~~~~~i~g~~~  295 (347)
T 2hcy_A          218 FIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPA-GAKCCSDVFNQVVKSISIVGSYV  295 (347)
T ss_dssp             EEETTTCSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEE-EEEEECCCCT-TCEEEEEHHHHHHTTCEEEECCC
T ss_pred             EEecCccHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEeCCC-CCCCCCCHHHHhhCCcEEEEccC
Confidence            999873 34444466666558999999999977799999999997 9999999754 23456777788889999999854


Q ss_pred             cCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          329 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                      ..   .++++++++++++|++++.   +++|+|+++++||+.+++++. +|+||++++
T Consensus       296 ~~---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  347 (347)
T 2hcy_A          296 GN---RADTREALDFFARGLVKSP---IKVVGLSTLPEIYEKMEKGQIVGRYVVDTSK  347 (347)
T ss_dssp             CC---HHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEESCC
T ss_pred             CC---HHHHHHHHHHHHhCCCccc---eEEEcHHHHHHHHHHHHcCCcceeEEEecCC
Confidence            32   3679999999999987663   479999999999999988764 699998864

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1e-56  Score=424.81  Aligned_cols=336  Identities=25%  Similarity=0.369  Sum_probs=296.0

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++.+++.+  +++.++|.|+|+++||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA   80 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence            799999999875  889999999999999999999999999999999887643 46799999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||||++.+..+|+.|.+|++|++++|.....   .|...+|                   +|+||++++++.++++|++
T Consensus        81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~~~P~~  138 (343)
T 2eih_A           81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQI---LGEHRHG-------------------TYAEYVVLPEANLAPKPKN  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTTSSCC-------------------SSBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECCCCCcccchhhccCcccccccccc---cCcCCCc-------------------cceeEEEeChHHeEECCCC
Confidence            99999999999999999999999999987654   4444444                   9999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +++++||++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.++++|+++++|
T Consensus       139 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d  217 (343)
T 2eih_A          139 LSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVN  217 (343)
T ss_dssp             SCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEc
Confidence            9999999999999999998877679999999999998 9999999999999999 8999999999999999999999999


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      +.+.+..+.+.+.+++ ++|++||++| ...++.++++++++ |+++.+|..... ...++...++.+++++.|+...  
T Consensus       218 ~~~~~~~~~~~~~~~~~~~d~vi~~~g-~~~~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~--  292 (343)
T 2eih_A          218 YTHPDWPKEVRRLTGGKGADKVVDHTG-ALYFEGVIKATANG-GRIAIAGASSGY-EGTLPFAHVFYRQLSILGSTMA--  292 (343)
T ss_dssp             TTSTTHHHHHHHHTTTTCEEEEEESSC-SSSHHHHHHHEEEE-EEEEESSCCCSC-CCCCCTTHHHHTTCEEEECCSC--
T ss_pred             CCcccHHHHHHHHhCCCCceEEEECCC-HHHHHHHHHhhccC-CEEEEEecCCCC-cCccCHHHHHhCCcEEEEecCc--
Confidence            8875555557777766 8999999999 45599999999997 999999975432 2345666778899999998532  


Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          332 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                       ..++++++++++++|++.  ++++++|+|+++++||+.+++++. +|+||++
T Consensus       293 -~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (343)
T 2eih_A          293 -SKSRLFPILRFVEEGKLK--PVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV  342 (343)
T ss_dssp             -CGGGHHHHHHHHHHTSSC--CCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred             -cHHHHHHHHHHHHcCCCC--CceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence             246899999999999764  568899999999999999988764 6999976

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=1.1e-56  Score=425.65  Aligned_cols=336  Identities=24%  Similarity=0.341  Sum_probs=297.3

Q ss_pred             eeEEEeccC-CCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAP-GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~-~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||+++... ...+++.++|+|+|++|||||||.|+|||++|+++++|.++. .+|.++|||++|+|+++|++|++|++|
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~-~~p~i~GhE~aG~V~~vG~~V~~~~~G   79 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN-KAGTVLGHEGIGIVKEIGADVSSLQVG   79 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC-CTTCBCCSEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC-CCCcccceeEEEEEEEECceeeecccC
Confidence            799888643 345999999999999999999999999999999999988754 679999999999999999999999999


Q ss_pred             CEEEecCCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           96 DVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        96 drV~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      |||++.+.. .|+.|.+|..+..+.|.....   .+...+|                   +|+||+.++++.++++|+++
T Consensus        80 drV~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~G-------------------~~ae~~~~~~~~~~~iP~~~  137 (348)
T 4eez_A           80 DRVSVAWFFEGCGHCEYCVSGNETFCREVKN---AGYSVDG-------------------GMAEEAIVVADYAVKVPDGL  137 (348)
T ss_dssp             CEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGSCBCCTTS
T ss_pred             CeEeecccccccCccccccCCcccccccccc---cccccCC-------------------cceeeccccccceeecCCCC
Confidence            999887754 578999999999999987664   4555555                   99999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      ++++||++++++.|||+++ +.+++++|++|||+|+|++|.+++|+|+.++..+||+++++++|+++++++|+++++|++
T Consensus       138 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~  216 (348)
T 4eez_A          138 DPIEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSG  216 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-
T ss_pred             CHHHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCC
Confidence            9999999999999999976 667899999999999999999999999977544999999999999999999999999999


Q ss_pred             CCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          255 NCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       255 ~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      +.+..+.+++.+++ ++|+++|++++..++..++++++++ |+++.+|...  ....++...++.+++++.|+....   
T Consensus       217 ~~~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~i~gs~~~~---  290 (348)
T 4eez_A          217 DVNPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPM-GKMVAVAVPN--TEMTLSVPTVVFDGVEVAGSLVGT---  290 (348)
T ss_dssp             CCCHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEE-EEEEECCCCS--CEEEECHHHHHHSCCEEEECCSCC---
T ss_pred             CCCHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCC-ceEEEEeccC--CCCccCHHHHHhCCeEEEEEecCC---
Confidence            97777779999998 9999999999999999999999997 9999999753  456777888899999999986543   


Q ss_pred             CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          334 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                      ++++.++++++++|++++  + +++|+|+++++||+.+++++. +|+||+|++
T Consensus       291 ~~~~~~~~~l~~~g~i~p--~-~~~~~l~~~~~A~~~l~~g~~~GKvVl~~sk  340 (348)
T 4eez_A          291 RLDLAEAFQFGAEGKVKP--I-VATRKLEEINDIIDEMKAGKIEGRMVIDFTK  340 (348)
T ss_dssp             HHHHHHHHHHHHTTSCCC--C-EEEECGGGHHHHHHHHHTTCCSSEEEEECC-
T ss_pred             HHHHHHHHHHHHcCCCEE--E-EEEEeHHHHHHHHHHHHCCCCccEEEEEccc
Confidence            468999999999997754  3 489999999999999999886 599999864

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=3.6e-56  Score=424.03  Aligned_cols=337  Identities=22%  Similarity=0.224  Sum_probs=291.9

Q ss_pred             CCCeeeeEEEeccCC-CCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCC
Q 016660           12 GKPIQCRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENV   89 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v   89 (385)
                      +++.+|||+++.+++ +++++.++|.|+|++|||+|||.+++||++|+++++|.++. ..+|.++|||++|+|+++|+++
T Consensus        23 ~m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v  102 (363)
T 3uog_A           23 MMSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSV  102 (363)
T ss_dssp             CCCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTC
T ss_pred             cCchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCC
Confidence            346689999999764 34999999999999999999999999999999999987653 5789999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCC-CCCCCCCCcccccccCCceeeccccccceeeeEeeccCceE
Q 016660           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI-SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (385)
Q Consensus        90 ~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~  168 (385)
                      ++|++||||++.+..      +|..+. +.|....... ..|...+|                   +|+||++++++.++
T Consensus       103 ~~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~~~  156 (363)
T 3uog_A          103 TRFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGAHPG-------------------VLSEYVVLPEGWFV  156 (363)
T ss_dssp             CSCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTTSCC-------------------CCBSEEEEEGGGEE
T ss_pred             CCCCCCCEEEEeccc------cccccc-cccccccccccccCcCCCC-------------------cceeEEEechHHeE
Confidence            999999999987654      567777 8886422111 13444444                   99999999999999


Q ss_pred             ECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC
Q 016660          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (385)
Q Consensus       169 ~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~  248 (385)
                      ++|+++++++||++++++.|||+++.+.++++++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++
T Consensus       157 ~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~  235 (363)
T 3uog_A          157 AAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGAD  235 (363)
T ss_dssp             ECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCS
T ss_pred             ECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCC
Confidence            9999999999999999999999998888999999999999999999999999999999 899999999999999999999


Q ss_pred             eEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEee
Q 016660          249 EFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  327 (385)
Q Consensus       249 ~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  327 (385)
                      +++|..+.+..+.+++.+++ ++|+|||++|... ++.++++++++ |+++.+|... .....++...++.+++++.|+.
T Consensus       236 ~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~~i~g~~  312 (363)
T 3uog_A          236 HGINRLEEDWVERVYALTGDRGADHILEIAGGAG-LGQSLKAVAPD-GRISVIGVLE-GFEVSGPVGPLLLKSPVVQGIS  312 (363)
T ss_dssp             EEEETTTSCHHHHHHHHHTTCCEEEEEEETTSSC-HHHHHHHEEEE-EEEEEECCCS-SCEECCBTTHHHHTCCEEEECC
T ss_pred             EEEcCCcccHHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhhcC-CEEEEEecCC-CcccCcCHHHHHhCCcEEEEEe
Confidence            99995545566668888888 9999999999655 99999999997 9999999764 2345677777888999999986


Q ss_pred             ecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          328 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      ...   .++++++++++++|++  +++++++|+|+++++||+.+++++.+|+||++
T Consensus       313 ~~~---~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~  363 (363)
T 3uog_A          313 VGH---RRALEDLVGAVDRLGL--KPVIDMRYKFTEVPEALAHLDRGPFGKVVIEF  363 (363)
T ss_dssp             CCC---HHHHHHHHHHHHHHTC--CCCEEEEEEGGGHHHHHHTGGGCCSBEEEEEC
T ss_pred             cCC---HHHHHHHHHHHHcCCC--ccceeeEEcHHHHHHHHHHHHcCCCccEEEeC
Confidence            443   4689999999999965  56789999999999999999888866999975

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=1.2e-57  Score=433.83  Aligned_cols=337  Identities=20%  Similarity=0.249  Sum_probs=288.0

Q ss_pred             CCeeeeEEEeccCCCCcEEEE--eecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCC
Q 016660           13 KPIQCRAAIATAPGEPLVIDE--VIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        13 ~~~~~~a~~~~~~~~~l~~~~--~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      +|++|||+++.+++.++++.+  +|.|+|+++||+|||.+++||++|++.++|.++...+|.++|||++|+|+++|++|+
T Consensus         3 ~p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~v~   82 (360)
T 1piw_A            3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSN   82 (360)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCCCC
Confidence            345799999999986699999  999999999999999999999999999998765556799999999999999999999


Q ss_pred             -CCCCCCEEEecC-CCCCCCCccccCCCCCCCCCC-CCCCC---CCCCCCCcccccccCCceeeccccccceeeeEeecc
Q 016660           91 -GVVEGDVVIPHF-LADCTECVGCRSKKGNLCSAF-PFKIS---PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (385)
Q Consensus        91 -~~~~GdrV~~~~-~~~~~~~~~c~~~~~~~~~~~-~~~~~---~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~  164 (385)
                       +|++||||++.+ ..+|+.|.+|+++++++|... ...+.   .|...+                   |+|+||+++++
T Consensus        83 ~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~  143 (360)
T 1piw_A           83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQ-------------------GGYANYVRVHE  143 (360)
T ss_dssp             SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCC-------------------CSSBSEEEEEG
T ss_pred             CCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCC-------------------CcceeEEEEch
Confidence             999999996654 578999999999999999864 11100   022223                   49999999999


Q ss_pred             CceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH
Q 016660          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (385)
Q Consensus       165 ~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  244 (385)
                      +.++++|+++++++||++++++.|||+++.+ ++++++++|||+|+|++|++++|+|+.+|+ +|+++++++++++++++
T Consensus       144 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          144 HFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK  221 (360)
T ss_dssp             GGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred             hheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence            9999999999999999999999999998755 899999999999999999999999999999 79999999999999999


Q ss_pred             cCCCeEEeCCCC-CchhHHHHhhCCCccEEEEccCC--hHHHHHHHHHhccCCceEEEeccCCCCCcc-cccHHHHhhcC
Q 016660          245 FGVTEFVNSKNC-GDKSIIIDMTDGGADYCFECVGL--ASLVQEAYACCRKGWGKTIVLGVDQPGSQL-SLSSFEVLHSG  320 (385)
Q Consensus       245 lg~~~vv~~~~~-~~~~~i~~~~~g~~d~vid~~g~--~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~  320 (385)
                      +|+++++++++. +..   .... +++|+|||++|.  +..++.++++++++ |+++.+|....   . .++...++.++
T Consensus       222 lGa~~v~~~~~~~~~~---~~~~-~~~D~vid~~g~~~~~~~~~~~~~l~~~-G~iv~~g~~~~---~~~~~~~~~~~~~  293 (360)
T 1piw_A          222 MGADHYIATLEEGDWG---EKYF-DTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQ---HEMLSLKPYGLKA  293 (360)
T ss_dssp             HTCSEEEEGGGTSCHH---HHSC-SCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCS---SCCEEECGGGCBS
T ss_pred             cCCCEEEcCcCchHHH---HHhh-cCCCEEEECCCCCcHHHHHHHHHHhcCC-CEEEEecCCCC---ccccCHHHHHhCC
Confidence            999999998764 322   2222 589999999998  66688999999997 99999997542   3 45555677899


Q ss_pred             cEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecch--HHHHHHHHhcCCe-eEEEEEeC
Q 016660          321 KILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE--INSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       321 ~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~--~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                      +++.|+....   .++++++++++++|++.+.  + ++|+|++  +++||+.+++++. +|+||+++
T Consensus       294 ~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~~  354 (360)
T 1piw_A          294 VSISYSALGS---IKELNQLLKLVSEKDIKIW--V-ETLPVGEAGVHEAFERMEKGDVRYRFTLVGY  354 (360)
T ss_dssp             CEEEECCCCC---HHHHHHHHHHHHHTTCCCC--E-EEEESSHHHHHHHHHHHHHTCCSSEEEEECC
T ss_pred             eEEEEEecCC---HHHHHHHHHHHHhCCCcce--E-EEEeccHhHHHHHHHHHHCCCCceEEEEecC
Confidence            9999985432   3679999999999977654  6 8999999  9999999988775 69999875

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=1e-56  Score=424.88  Aligned_cols=332  Identities=26%  Similarity=0.418  Sum_probs=272.3

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC--CCCCCccccCceeEEEEEeCCCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--PAVFPRILGHEAIGVVESVGENVDGV   92 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~--~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (385)
                      .+|||+++.++++++++.++|.|+|+++||+|||.+++||++|++++.|.++  ...+|.++|||++|+|+++|++ ++|
T Consensus         2 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~   80 (344)
T 2h6e_A            2 VKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKV   80 (344)
T ss_dssp             EEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCC
T ss_pred             ceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCC
Confidence            4699999999986799999999999999999999999999999999998765  3467999999999999999999 999


Q ss_pred             CCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeec-cCceEECC
Q 016660           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVVKVD  171 (385)
Q Consensus        93 ~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~-~~~~~~iP  171 (385)
                      ++||||+..+..+|+.|.+|+++++++|.....   +|...+|                   +|+||++++ +++++++ 
T Consensus        81 ~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~~~i-  137 (344)
T 2h6e_A           81 KKGDNVVVYATWGDLTCRYCREGKFNICKNQII---PGQTTNG-------------------GFSEYMLVKSSRWLVKL-  137 (344)
T ss_dssp             CTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEESCGGGEEEE-
T ss_pred             CCCCEEEECCCCCCCCChhhhCCCcccCCCccc---cccccCC-------------------cceeeEEecCcccEEEe-
Confidence            999999999999999999999999999986543   4444444                   999999999 9999999 


Q ss_pred             CCCCcccccccccchhhhhhhhhhh----ccCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHHHc
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRT----ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRF  245 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~----~~~~~~~~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~l  245 (385)
                      +++++++||.+++++.|||+++...    .++ ++++|||+|+|++|++++|+|+.+  |+ +|++++++++++++++++
T Consensus       138 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l  215 (344)
T 2h6e_A          138 NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL  215 (344)
T ss_dssp             SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH
T ss_pred             CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh
Confidence            9999999999999999999987654    288 999999999999999999999999  99 799999999999999999


Q ss_pred             CCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEE
Q 016660          246 GVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  324 (385)
Q Consensus       246 g~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  324 (385)
                      |+++++|+++.  ...+.+++++ ++|+|||++|....++.++++++++ |+++.+|...  ...+++...++.+++++.
T Consensus       216 Ga~~vi~~~~~--~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~--~~~~~~~~~~~~~~~~i~  290 (344)
T 2h6e_A          216 GADYVSEMKDA--ESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGMEG--KRVSLEAFDTAVWNKKLL  290 (344)
T ss_dssp             TCSEEECHHHH--HHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCS--SCCCCCHHHHHHTTCEEE
T ss_pred             CCCEEeccccc--hHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcC-CEEEEeCCCC--CCcccCHHHHhhCCcEEE
Confidence            99999987541  1224566666 8999999999997799999999997 9999999754  235677777888999999


Q ss_pred             EeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          325 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       325 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      |+....   .++++++++++++|++.+  .+ ++|+|+++++||+.+++++. +|+||++
T Consensus       291 g~~~~~---~~~~~~~~~l~~~g~i~~--~i-~~~~l~~~~~A~~~~~~~~~~gKvvl~~  344 (344)
T 2h6e_A          291 GSNYGS---LNDLEDVVRLSESGKIKP--YI-IKVPLDDINKAFTNLDEGRVDGRQVITP  344 (344)
T ss_dssp             ECCSCC---HHHHHHHHHHHHTTSSCC--CE-EEECC----------------CEEEECC
T ss_pred             EEecCC---HHHHHHHHHHHHcCCCCc--ce-EEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence            985432   467999999999997654  47 99999999999999988775 6999864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=8e-57  Score=434.41  Aligned_cols=339  Identities=19%  Similarity=0.261  Sum_probs=292.8

Q ss_pred             CeeeeEEEeccCCCCcEEEEeecCC-CCCCeEEEEEeeeecccccccccccCCC-------CCCCCccccCceeEEEEEe
Q 016660           14 PIQCRAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDF-------PAVFPRILGHEAIGVVESV   85 (385)
Q Consensus        14 ~~~~~a~~~~~~~~~l~~~~~~~p~-~~~~eVlVkv~a~~i~~~D~~~~~g~~~-------~~~~p~~~G~e~~G~V~~v   85 (385)
                      +.+|++.++..++. +++.++|.|+ |+++||+|||.+++||++|++++.|...       ...+|.++|||++|+|+++
T Consensus        28 ~~~m~a~~~~~~~~-l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~v  106 (404)
T 3ip1_A           28 KLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEA  106 (404)
T ss_dssp             TBBSCGGGTEEEEE-EEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEE
T ss_pred             hhhcceEEEEeCCc-eEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEE
Confidence            34455544444443 8899999999 9999999999999999999999876421       2467999999999999999


Q ss_pred             CCCC------CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeee
Q 016660           86 GENV------DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEY  159 (385)
Q Consensus        86 G~~v------~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~  159 (385)
                      |++|      ++|++||||++.+..+|+.|.+|++|++++|.....   .|...+|                   +|+||
T Consensus       107 G~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey  164 (404)
T 3ip1_A          107 GPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE---LGFNVDG-------------------AFAEY  164 (404)
T ss_dssp             CTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSE
T ss_pred             CCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc---cCCCCCC-------------------CCcce
Confidence            9999      889999999999999999999999999999987664   4555555                   99999


Q ss_pred             EeeccCceEECCCCCCc------ccccccccchhhhhhhhhhh-ccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 016660          160 TVLDIAHVVKVDPTVPP------NRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  232 (385)
Q Consensus       160 v~v~~~~~~~iP~~l~~------~~aa~l~~~~~ta~~al~~~-~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~  232 (385)
                      ++++++.++++|+++++      .++|+++.+++|||+++... +++++|++|||+|+|++|++++|+|+.+|+++|+++
T Consensus       165 ~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~  244 (404)
T 3ip1_A          165 VKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILS  244 (404)
T ss_dssp             EEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             EEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            99999999999998864      45888888999999988655 489999999999999999999999999999889999


Q ss_pred             cCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCCh-HHHHHHHHHh----ccCCceEEEeccCCCC
Q 016660          233 DVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLA-SLVQEAYACC----RKGWGKTIVLGVDQPG  306 (385)
Q Consensus       233 ~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~-~~~~~~~~~l----~~~~G~~v~~g~~~~~  306 (385)
                      +++++|+++++++|+++++++++.+..+.+++.+++ ++|+|||++|++ ..++.+.+++    +++ |+++.+|.... 
T Consensus       245 ~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~-G~iv~~G~~~~-  322 (404)
T 3ip1_A          245 EPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGIN-ATVAIVARADA-  322 (404)
T ss_dssp             CSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCC-CEEEECSCCCS-
T ss_pred             CCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCC-cEEEEeCCCCC-
Confidence            999999999999999999999887777778999988 999999999998 3477777888    997 99999998643 


Q ss_pred             CcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEeC
Q 016660          307 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  384 (385)
Q Consensus       307 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~~  384 (385)
                       ..+++...++.+++++.|+....  ..+++.++++++++| +++.++++++|+|+++++||+.+.   .+|+||+++
T Consensus       323 -~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~---~GKvvl~~~  393 (404)
T 3ip1_A          323 -KIPLTGEVFQVRRAQIVGSQGHS--GHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQ---TDKSLVKVT  393 (404)
T ss_dssp             -CEEECHHHHHHTTCEEEECCCCC--STTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTT---TCTTCSCEE
T ss_pred             -CCcccHHHHhccceEEEEecCCC--chHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHh---CCcEEEecC
Confidence             45778888889999999986432  246899999999999 999999999999999999999998   347776653

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=7.8e-57  Score=433.77  Aligned_cols=345  Identities=20%  Similarity=0.283  Sum_probs=295.9

Q ss_pred             eeeEEEeccCCCCcEEEEeecCCC-CC-----CeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCC
Q 016660           16 QCRAAIATAPGEPLVIDEVIVDPP-NS-----HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (385)
Q Consensus        16 ~~~a~~~~~~~~~l~~~~~~~p~~-~~-----~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (385)
                      +|||+++.+++. +++.++|.|+| ++     +||+|||.+++||++|+++++|.+. ..+|.++|||++|+|+++|++|
T Consensus         2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~-~~~p~v~GhE~~G~V~~vG~~v   79 (398)
T 2dph_A            2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGSDV   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred             ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC-CCCCcccCCceEEEEEEECCCC
Confidence            499999999875 99999999987 68     9999999999999999999988643 4678999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCC-----CCCCCCCCCcccccccCCceeeccccccceeeeEeecc
Q 016660           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-----ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (385)
Q Consensus        90 ~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~  164 (385)
                      ++|++||||++.+..+|+.|.+|+++++++|......     ..+|....                ...|+|+||+++++
T Consensus        80 ~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~----------------~~~G~~aey~~v~~  143 (398)
T 2dph_A           80 ELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLK----------------GWSGGQAEYVLVPY  143 (398)
T ss_dssp             CSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBS----------------SCCCSSBSEEEESS
T ss_pred             CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccC----------------CCCceeeeeEEecc
Confidence            9999999999999999999999999999999861110     01222100                01249999999998


Q ss_pred             C--ceEECCCCCCccc----ccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchH
Q 016660          165 A--HVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (385)
Q Consensus       165 ~--~~~~iP~~l~~~~----aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~  238 (385)
                      +  .++++|+++++++    ||++++++.|||+++ +.+++++|++|||+|+|++|++++|+||.+|+++|++++++++|
T Consensus       144 ~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  222 (398)
T 2dph_A          144 ADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPER  222 (398)
T ss_dssp             HHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHH
T ss_pred             ccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            7  8999999999998    899999999999988 77899999999999999999999999999999889999999999


Q ss_pred             HHHHHHcCCCeEEeCCCCCc-hhHHHHhhCC-CccEEEEccCChH--------------HHHHHHHHhccCCceEEEecc
Q 016660          239 FEIGKRFGVTEFVNSKNCGD-KSIIIDMTDG-GADYCFECVGLAS--------------LVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       239 ~~~~~~lg~~~vv~~~~~~~-~~~i~~~~~g-~~d~vid~~g~~~--------------~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +++++++|++ ++++++.+. .+.+++.+++ ++|+|||++|+..              .++.++++++++ |+++.+|.
T Consensus       223 ~~~a~~lGa~-~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-G~iv~~G~  300 (398)
T 2dph_A          223 LKLLSDAGFE-TIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAG-GAIGIPGI  300 (398)
T ss_dssp             HHHHHTTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEE-EEEECCSC
T ss_pred             HHHHHHcCCc-EEcCCCcchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcC-CEEEEecc
Confidence            9999999995 889887665 5668888888 8999999999762              589999999997 99999997


Q ss_pred             CCC-----------CCcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCC--CCCceeeeeecchHHHHHH
Q 016660          303 DQP-----------GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE--LDKFVTHEMKFEEINSAFD  369 (385)
Q Consensus       303 ~~~-----------~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~i~~~~~l~~~~~a~~  369 (385)
                      ...           .....++...++.|++++.|+...   ..+++.++++++++|+++  +.++++++|+|+++++||+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~---~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~~  377 (398)
T 2dph_A          301 YVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAP---VTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYA  377 (398)
T ss_dssp             CCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCC---GGGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHHH
T ss_pred             ccccccccccccccCCcccccHHHHhhcCCEEEEeccC---cHHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHHH
Confidence            521           123466777788899999886432   246799999999999988  7778899999999999999


Q ss_pred             HHhcCCeeEEEEEeC
Q 016660          370 LLIKGKCLRCVIWMG  384 (385)
Q Consensus       370 ~l~~~~~~k~vi~~~  384 (385)
                      .+.+++.+|+||+++
T Consensus       378 ~~~~~~~gKvvv~~~  392 (398)
T 2dph_A          378 KFDKGSPAKFVIDPH  392 (398)
T ss_dssp             HHHTTCSCEEEECTT
T ss_pred             HHhcCCceEEEEecC
Confidence            998876699999874

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=2.8e-57  Score=430.84  Aligned_cols=331  Identities=18%  Similarity=0.186  Sum_probs=289.6

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCC---CccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~---p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++.+++.++++.++|.|+|+++||||||.+++||++|+++++|.++...+   |.++|||++| |+++|++ ++|+
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~   78 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TELE   78 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SSCC
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CCCC
Confidence            799999999877999999999999999999999999999999999987654456   8999999999 9999999 9999


Q ss_pred             CCCEEEecCCCC--CCCCccccCCCCCCCCCCCCCCCC--CC-CCCCcccccccCCceeeccccccceeeeEeeccCceE
Q 016660           94 EGDVVIPHFLAD--CTECVGCRSKKGNLCSAFPFKISP--WM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (385)
Q Consensus        94 ~GdrV~~~~~~~--~~~~~~c~~~~~~~~~~~~~~~~~--g~-~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~  168 (385)
                      +||||++.+..+  |+.|.+|+++++++|....+   +  |. ..+                   |+|+||++++++.++
T Consensus        79 vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~~~g~~~~~-------------------G~~aey~~v~~~~~~  136 (357)
T 2b5w_A           79 EGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMY---FERGIVGAH-------------------GYMSEFFTSPEKYLV  136 (357)
T ss_dssp             TTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSC---EEETTBEEC-------------------CSCBSEEEEEGGGEE
T ss_pred             CCCEEEECCcCCCCCCCChHHhCcCcccCCCCcc---cccCccCCC-------------------cceeeEEEEchHHeE
Confidence            999999998888  99999999999999986553   2  32 223                   499999999999999


Q ss_pred             ECCCCCCcccccccccchhhhhhhhhhhccCCCC------CEEEEEcCCHHHHHH-HHHH-HHcCCCEEEEEcCCch---
Q 016660          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVG------STVVIFGLGSIGLAV-AEGA-RLCGATRIIGVDVISE---  237 (385)
Q Consensus       169 ~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~------~~VlI~G~g~vG~~a-i~la-~~~G~~~vi~~~~~~~---  237 (385)
                      ++|++++ +. |+++.++.|||+++ +.++++++      ++|||+|+|++|+++ +|+| |.+|+++|++++++++   
T Consensus       137 ~iP~~~~-~~-aal~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~  213 (357)
T 2b5w_A          137 RIPRSQA-EL-GFLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDP  213 (357)
T ss_dssp             ECCGGGS-TT-GGGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCH
T ss_pred             ECCCCcc-hh-hhhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHH
Confidence            9999999 54 55777999999988 67889999      999999999999999 9999 9999966999999999   


Q ss_pred             HHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHH-
Q 016660          238 KFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV-  316 (385)
Q Consensus       238 ~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-  316 (385)
                      |+++++++|++++ |+++.+..+ +++. ++++|+|||++|+...++.++++++++ |+++.+|.... ...+++...+ 
T Consensus       214 ~~~~~~~lGa~~v-~~~~~~~~~-i~~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~  288 (357)
T 2b5w_A          214 TIDIIEELDATYV-DSRQTPVED-VPDV-YEQMDFIYEATGFPKHAIQSVQALAPN-GVGALLGVPSD-WAFEVDAGAFH  288 (357)
T ss_dssp             HHHHHHHTTCEEE-ETTTSCGGG-HHHH-SCCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCCC-CCCCCCHHHHH
T ss_pred             HHHHHHHcCCccc-CCCccCHHH-HHHh-CCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEEeCCCC-CCceecHHHHh
Confidence            9999999999999 988766666 7777 558999999999987799999999997 99999997642 3456777777 


Q ss_pred             ---hhcCcEEEEeeecCCCCCCcHHHHHHHHHcC--CCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEeCC
Q 016660          317 ---LHSGKILMGSLFGGLKAKSDIPILLKRYMDK--ELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE  385 (385)
Q Consensus       317 ---~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~~~  385 (385)
                         +.+++++.|+....   .++++++++++++|  ++ +.++++++|+|+++++||+.+  +..+|+||++++
T Consensus       289 ~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~~~~-~~~~i~~~~~l~~~~~A~~~~--~~~gKvvi~~~~  356 (357)
T 2b5w_A          289 REMVLHNKALVGSVNSH---VEHFEAATVTFTKLPKWF-LEDLVTGVHPLSEFEAAFDDD--DTTIKTAIEFST  356 (357)
T ss_dssp             HHHHHTTCEEEECCCCC---HHHHHHHHHHHHHSCHHH-HHHHEEEEEEGGGGGGGGCCS--TTCCEEEEECCC
T ss_pred             HHHHhCCeEEEEeccCC---HHHHHHHHHHHHhCchhh-hhhhcceeecHHHHHHHHHHh--CCCceEEEEecC
Confidence               78999999986432   46799999999999  76 677789999999999999988  456799999864

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=6.6e-56  Score=419.91  Aligned_cols=334  Identities=27%  Similarity=0.366  Sum_probs=294.0

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC--------CCCCCccccCceeEEEEEeCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------PAVFPRILGHEAIGVVESVGEN   88 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~--------~~~~p~~~G~e~~G~V~~vG~~   88 (385)
                      |||+++.+++.++++.++|.|+|+++||+|||.+++||++|++++.|.++        ...+|.++|||++|+|+++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~   80 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence            79999999986799999999999999999999999999999999988654        3467999999999999999999


Q ss_pred             CCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeecc-Cce
Q 016660           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AHV  167 (385)
Q Consensus        89 v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~-~~~  167 (385)
                      +++|++||||+..+..+|+.|.+|+++++++|.+...   +|...+|                   +|+||+++++ +.+
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~  138 (347)
T 1jvb_A           81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (347)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc---ccccCCC-------------------cceeEEEecCccce
Confidence            9999999999999999999999999999999986543   3444444                   9999999999 999


Q ss_pred             EECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHHc
Q 016660          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRF  245 (385)
Q Consensus       168 ~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~l  245 (385)
                      +++ +++++++||.+++++.|||+++ +.++++++++|||+|+ |++|++++|+|+.. |+ +|+++++++++.++++++
T Consensus       139 ~~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~  215 (347)
T 1jvb_A          139 YKL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA  215 (347)
T ss_dssp             EEC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH
T ss_pred             EEe-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh
Confidence            999 9999999999999999999987 4588999999999998 59999999999999 99 899999999999999999


Q ss_pred             CCCeEEeCCCCCchhHHHHhhC-CCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEE
Q 016660          246 GVTEFVNSKNCGDKSIIIDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  324 (385)
Q Consensus       246 g~~~vv~~~~~~~~~~i~~~~~-g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  324 (385)
                      |+++++++.+.+..+.+.+.+. +++|++||++|....++.++++++++ |+++.+|.... .. +++...++.+++++.
T Consensus       216 g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~-~~~~~~~~~~~~~i~  292 (347)
T 1jvb_A          216 GADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGA-DL-HYHAPLITLSEIQFV  292 (347)
T ss_dssp             TCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCC-CC-CCCHHHHHHHTCEEE
T ss_pred             CCCEEecCCCccHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCC-CC-CCCHHHHHhCceEEE
Confidence            9999999887555555677776 58999999999987799999999997 99999997541 22 667777888999999


Q ss_pred             EeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          325 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       325 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      |+....   .++++++++++++|++.  ++++++|+|+++++||+.+++++. +|+||++
T Consensus       293 g~~~~~---~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  347 (347)
T 1jvb_A          293 GSLVGN---QSDFLGIMRLAEAGKVK--PMITKTMKLEEANEAIDNLENFKAIGRQVLIP  347 (347)
T ss_dssp             ECCSCC---HHHHHHHHHHHHTTSSC--CCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             EEeccC---HHHHHHHHHHHHcCCCC--ceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence            986432   46799999999999764  568899999999999999988875 6999874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.1e-56  Score=424.93  Aligned_cols=340  Identities=21%  Similarity=0.356  Sum_probs=284.9

Q ss_pred             CCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCC
Q 016660           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (385)
Q Consensus        13 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (385)
                      ..|+|+|+.+.++++++++.++|.|+|+++||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|++|++|
T Consensus        19 ~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~   98 (369)
T 1uuf_A           19 AGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKY   98 (369)
T ss_dssp             ----CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             cCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCCCCCC
Confidence            45789999999887779999999999999999999999999999999998876555679999999999999999999999


Q ss_pred             CCCCEEEecCC-CCCCCCccccCCCCCCCCCCC--CCCC---CCCCCCCcccccccCCceeeccccccceeeeEeeccCc
Q 016660           93 VEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFP--FKIS---PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (385)
Q Consensus        93 ~~GdrV~~~~~-~~~~~~~~c~~~~~~~~~~~~--~~~~---~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~  166 (385)
                      ++||||++.+. .+|+.|.+|++|++++|....  +...   .|...                   .|+|+||++++++.
T Consensus        99 ~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~-------------------~G~~aeyv~v~~~~  159 (369)
T 1uuf_A           99 APGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHT-------------------LGGYSQQIVVHERY  159 (369)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBC-------------------CCSSBSEEEEEGGG
T ss_pred             CCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCC-------------------CCcccceEEEcchh
Confidence            99999998875 469999999999999998642  1000   02122                   24999999999999


Q ss_pred             eEECCCC-CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc
Q 016660          167 VVKVDPT-VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (385)
Q Consensus       167 ~~~iP~~-l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l  245 (385)
                      ++++|++ +++++||++++++.|||+++.+ .+++++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++
T Consensus       160 ~~~~P~~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~l  237 (369)
T 1uuf_A          160 VLRIRHPQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL  237 (369)
T ss_dssp             CEECCSCGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH
T ss_pred             EEECCCCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc
Confidence            9999999 9999999999999999998754 689999999999999999999999999999 799999999999999999


Q ss_pred             CCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEE
Q 016660          246 GVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  325 (385)
Q Consensus       246 g~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  325 (385)
                      |+++++|+++.+   .+.+.. +++|+|||++|.+..++.++++++++ |+++.+|..... ...++...++.+++++.|
T Consensus       238 Ga~~vi~~~~~~---~~~~~~-~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~g  311 (369)
T 1uuf_A          238 GADEVVNSRNAD---EMAAHL-KSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATP-HKSPEVFNLIMKRRAIAG  311 (369)
T ss_dssp             TCSEEEETTCHH---HHHTTT-TCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC--------CHHHHHTTTCEEEE
T ss_pred             CCcEEeccccHH---HHHHhh-cCCCEEEECCCCHHHHHHHHHHhccC-CEEEEeccCCCC-ccccCHHHHHhCCcEEEE
Confidence            999999987632   123333 58999999999886689999999997 999999975322 125666778889999999


Q ss_pred             eeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          326 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                      +....   .+++.++++++++|++.+.  + +.|+|+++++||+.+++++. +|+||++++
T Consensus       312 ~~~~~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  366 (369)
T 1uuf_A          312 SMIGG---IPETQEMLDFCAEHGIVAD--I-EMIRADQINEAYERMLRGDVKYRFVIDNRT  366 (369)
T ss_dssp             CCSCC---HHHHHHHHHHHHHHTCCCC--E-EEECGGGHHHHHHHHHTTCSSSEEEEEGGG
T ss_pred             eecCC---HHHHHHHHHHHHhCCCCcc--e-EEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            86432   3678999999999977654  5 57999999999999988775 699998753

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=2.1e-55  Score=417.84  Aligned_cols=342  Identities=22%  Similarity=0.331  Sum_probs=287.6

Q ss_pred             CCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCC
Q 016660           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (385)
Q Consensus        13 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (385)
                      .+|+|++++..++.+++++.++|.|+|++|||+|||.+++||++|++.++|.++...+|.++|||++|+|+++|++|++|
T Consensus         6 ~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~~~   85 (357)
T 2cf5_A            6 AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKF   85 (357)
T ss_dssp             CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECSSCCSC
T ss_pred             CcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCC
Confidence            46789999998876679999999999999999999999999999999998876555679999999999999999999999


Q ss_pred             CCCCEEEecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           93 VEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        93 ~~GdrV~~~~~-~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      ++||||++.+. .+|+.|.+|+++++++|....+. ..+....|              ....|+|+||++++++.++++|
T Consensus        86 ~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~~~g--------------~~~~G~~aey~~v~~~~~~~~P  150 (357)
T 2cf5_A           86 TVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWS-YNDVYING--------------QPTQGGFAKATVVHQKFVVKIP  150 (357)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBCTTS--------------CBCCCSSBSCEEEEGGGEEECC
T ss_pred             CCCCEEEEcCCCCCCCCChHHhCcCcccCCCcccc-ccccccCC--------------CCCCCccccEEEechhhEEECc
Confidence            99999987654 57999999999999999643321 01100011              1123599999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCe
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE  249 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~-~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~  249 (385)
                      +++++++||++++++.|||+++. ..+++ ++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++ ++|+++
T Consensus       151 ~~ls~~~aa~l~~~~~ta~~~l~-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~  228 (357)
T 2cf5_A          151 EGMAVEQAAPLLCAGVTVYSPLS-HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGADD  228 (357)
T ss_dssp             SSCCHHHHTGGGTHHHHHHHHHH-HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCSC
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCce
Confidence            99999999999999999999774 56788 99999999999999999999999999 8999999999999888 999999


Q ss_pred             EEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCccc-ccHHHHhhcCcEEEEeee
Q 016660          250 FVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVLHSGKILMGSLF  328 (385)
Q Consensus       250 vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~~~~~~i~g~~~  328 (385)
                      ++++++   ...+.+.+ +++|+|||++|.+..++.++++++++ |+++.+|....  ... ++.. ++.+++++.|++.
T Consensus       229 vi~~~~---~~~~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~-~~~~~~~i~g~~~  300 (357)
T 2cf5_A          229 YVIGSD---QAKMSELA-DSLDYVIDTVPVHHALEPYLSLLKLD-GKLILMGVINN--PLQFLTPL-LMLGRKVITGSFI  300 (357)
T ss_dssp             EEETTC---HHHHHHST-TTEEEEEECCCSCCCSHHHHTTEEEE-EEEEECSCCSS--CCCCCHHH-HHHHTCEEEECCS
T ss_pred             eecccc---HHHHHHhc-CCCCEEEECCCChHHHHHHHHHhccC-CEEEEeCCCCC--CccccCHH-HHhCccEEEEEcc
Confidence            999876   22355554 47999999999876689999999997 99999997532  223 5555 7788999999864


Q ss_pred             cCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          329 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                      ..   .++++++++++++|++++.  + ++|+|+++++||+.+++++. +|+||++++
T Consensus       301 ~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  352 (357)
T 2cf5_A          301 GS---MKETEEMLEFCKEKGLSSI--I-EVVKMDYVNTAFERLEKNDVRYRFVVDVEG  352 (357)
T ss_dssp             CC---HHHHHHHHHHHHHTTCCCC--E-EEEEGGGHHHHHHHHHTTCSSSEEEEETTS
T ss_pred             CC---HHHHHHHHHHHHcCCCCCc--e-EEEeHHHHHHHHHHHHCCCCceEEEEeCCc
Confidence            32   3578999999999987654  4 79999999999999988775 599998753

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.1e-56  Score=428.29  Aligned_cols=346  Identities=20%  Similarity=0.234  Sum_probs=290.8

Q ss_pred             eeeEEEeccCCCCcEEEEeecCCCC-CCe------EEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCC
Q 016660           16 QCRAAIATAPGEPLVIDEVIVDPPN-SHE------VRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (385)
Q Consensus        16 ~~~a~~~~~~~~~l~~~~~~~p~~~-~~e------VlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~   88 (385)
                      +|||+++.+++. +++.++|.|+|. ++|      |||||.+++||++|+++++|.++ ..+|.++|||++|+|+++|++
T Consensus         2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~p~v~GhE~~G~V~~vG~~   79 (398)
T 1kol_A            2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRD   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTT
T ss_pred             ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC-CCCCcccCcccEEEEEEECCC
Confidence            589999999875 999999999996 898      99999999999999999988653 356899999999999999999


Q ss_pred             CCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCC---CCCCCCCCcccccccCCceeeccccccceeeeEeeccC
Q 016660           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI---SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (385)
Q Consensus        89 v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~---~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~  165 (385)
                      |++|++||||++.+..+|+.|.+|++|++++|.......   .+|+...               ....|+|+||++++++
T Consensus        80 v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~---------------~~~~G~~aey~~v~~~  144 (398)
T 1kol_A           80 VENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDM---------------GDWTGGQAEYVLVPYA  144 (398)
T ss_dssp             CCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTS---------------CCBCCCSBSEEEESSH
T ss_pred             CCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccC---------------CCCCceeeeEEEecch
Confidence            999999999999999999999999999999998654210   0121100               0012599999999986


Q ss_pred             --ceEECCCCCCccc----ccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHH
Q 016660          166 --HVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (385)
Q Consensus       166 --~~~~iP~~l~~~~----aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~  239 (385)
                        +++++|+++++++    +|++++++.|||+++. .+++++|++|||+|+|++|++++|+||.+|+++|++++++++|+
T Consensus       145 ~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~  223 (398)
T 1kol_A          145 DFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL  223 (398)
T ss_dssp             HHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred             hCeEEECCCCcchhhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH
Confidence              8999999999887    7889999999999884 78999999999999999999999999999998899999999999


Q ss_pred             HHHHHcCCCeEEeCCCCC-chhHHHHhhCC-CccEEEEccCCh---------------HHHHHHHHHhccCCceEEEecc
Q 016660          240 EIGKRFGVTEFVNSKNCG-DKSIIIDMTDG-GADYCFECVGLA---------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       240 ~~~~~lg~~~vv~~~~~~-~~~~i~~~~~g-~~d~vid~~g~~---------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ++++++|++ ++++++.+ ..+.+++.+++ ++|+|||++|+.               ..++.++++++++ |+++.+|.
T Consensus       224 ~~a~~lGa~-~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~  301 (398)
T 1kol_A          224 AHAKAQGFE-IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGL  301 (398)
T ss_dssp             HHHHHTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSC
T ss_pred             HHHHHcCCc-EEccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcC-CEEEEecc
Confidence            999999997 78887644 34558888887 899999999986               2689999999997 99999997


Q ss_pred             CCC-C----------CcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCC-CCCceeeeeecchHHHHHHH
Q 016660          303 DQP-G----------SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE-LDKFVTHEMKFEEINSAFDL  370 (385)
Q Consensus       303 ~~~-~----------~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~i~~~~~l~~~~~a~~~  370 (385)
                      ... .          ..+.++...++.|++++.++..   ...+++.++++++++|+++ +.++++++|+|+++++||+.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~~  378 (398)
T 1kol_A          302 YVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQT---PVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGE  378 (398)
T ss_dssp             CCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSC---CHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHHH
T ss_pred             ccCCcccccccccccccccccHHHHhhcccEEEeccc---ChHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHHH
Confidence            521 1          1245666677889999987632   1235678899999999887 44667899999999999999


Q ss_pred             HhcCCeeEEEEEeC
Q 016660          371 LIKGKCLRCVIWMG  384 (385)
Q Consensus       371 l~~~~~~k~vi~~~  384 (385)
                      +.+++.+|+||+++
T Consensus       379 ~~~~~~gKvvi~~~  392 (398)
T 1kol_A          379 FDAGVPKKFVIDPH  392 (398)
T ss_dssp             HHHTCSCEEEECTT
T ss_pred             HhCCCceEEEEEeC
Confidence            98876689999874

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=4.2e-54  Score=410.12  Aligned_cols=342  Identities=22%  Similarity=0.347  Sum_probs=286.8

Q ss_pred             CCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCC
Q 016660           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (385)
Q Consensus        13 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (385)
                      .+|+++++...++.+++++.++|.|+|+++||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|++|++|
T Consensus        13 ~~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~   92 (366)
T 1yqd_A           13 HPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKV   92 (366)
T ss_dssp             SSEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             CCeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEEECCCCCcC
Confidence            35677777777666669999999999999999999999999999999998876555679999999999999999999999


Q ss_pred             CCCCEEEecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           93 VEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        93 ~~GdrV~~~~~-~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      ++||||++.+. .+|+.|.+|+++++++|....+. ..+....|              ....|+|+||++++++.++++|
T Consensus        93 ~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~~~g--------------~~~~G~~aey~~v~~~~~~~~P  157 (366)
T 1yqd_A           93 NVGDKVGVGCLVGACHSCESCANDLENYCPKMILT-YASIYHDG--------------TITYGGYSNHMVANERYIIRFP  157 (366)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEES-SSSBCTTS--------------CBCCCSSBSEEEEEGGGCEECC
T ss_pred             CCCCEEEEcCCcCCCCCChhhhCcCcccCCccccc-ccccccCC--------------CcCCCccccEEEEchhhEEECC
Confidence            99999987664 58999999999999999543321 01111011              1123599999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCe
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE  249 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~-~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~  249 (385)
                      +++++++||++++++.|||+++. ..+++ ++++|||+|+|++|++++|+|+.+|+ +|+++++++++.+.++ ++|+++
T Consensus       158 ~~ls~~~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~  235 (366)
T 1yqd_A          158 DNMPLDGGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGADS  235 (366)
T ss_dssp             TTSCTTTTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSE
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCce
Confidence            99999999999999999999874 45777 99999999999999999999999999 8999999999998877 899999


Q ss_pred             EEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeec
Q 016660          250 FVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  329 (385)
Q Consensus       250 vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  329 (385)
                      ++|+.+.   ..+.+.+ +++|+|||++|....++.++++++++ |+++.+|...  ....++...++.+++++.|+...
T Consensus       236 v~~~~~~---~~~~~~~-~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~--~~~~~~~~~~~~~~~~i~g~~~~  308 (366)
T 1yqd_A          236 FLVSRDQ---EQMQAAA-GTLDGIIDTVSAVHPLLPLFGLLKSH-GKLILVGAPE--KPLELPAFSLIAGRKIVAGSGIG  308 (366)
T ss_dssp             EEETTCH---HHHHHTT-TCEEEEEECCSSCCCSHHHHHHEEEE-EEEEECCCCS--SCEEECHHHHHTTTCEEEECCSC
T ss_pred             EEeccCH---HHHHHhh-CCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEccCC--CCCCcCHHHHHhCCcEEEEecCC
Confidence            9998762   2355555 47999999999876688999999997 9999999754  23457777788899999998643


Q ss_pred             CCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          330 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       330 ~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                      .   .+++.++++++++|++.+.  + ++|+|+++++||+.+++++. +|+||+++
T Consensus       309 ~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvl~~~  358 (366)
T 1yqd_A          309 G---MKETQEMIDFAAKHNITAD--I-EVISTDYLNTAMERLAKNDVRYRFVIDVG  358 (366)
T ss_dssp             C---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCSSEEEECHH
T ss_pred             C---HHHHHHHHHHHHcCCCCCc--e-EEEcHHHHHHHHHHHHcCCcceEEEEEcc
Confidence            2   3578999999999988764  4 79999999999999988775 69999764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=3.3e-53  Score=415.18  Aligned_cols=343  Identities=18%  Similarity=0.176  Sum_probs=291.8

Q ss_pred             CCCCeeeeEEEeccC---------------CCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccC-----------
Q 016660           11 AGKPIQCRAAIATAP---------------GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-----------   64 (385)
Q Consensus        11 ~~~~~~~~a~~~~~~---------------~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~-----------   64 (385)
                      ..+|.+|||+++.++               .+++++.++|.|+|+++||||||.+++||++|++...+.           
T Consensus        25 ~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~  104 (456)
T 3krt_A           25 LPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERY  104 (456)
T ss_dssp             SCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHH
T ss_pred             CCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhc
Confidence            457889999999987               234999999999999999999999999999998754321           


Q ss_pred             --CC----CCCCC-ccccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcc
Q 016660           65 --DF----PAVFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS  137 (385)
Q Consensus        65 --~~----~~~~p-~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~  137 (385)
                        ..    ...+| .++|||++|+|+++|++|++|++||||++.+. .|..|..|..+..+.|.....   +|+...   
T Consensus       105 g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~---~G~~~~---  177 (456)
T 3krt_A          105 GRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRI---WGFETN---  177 (456)
T ss_dssp             HTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEE---TTTTSS---
T ss_pred             cccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCccccc---cccCCC---
Confidence              10    12456 69999999999999999999999999998644 588889999999999987665   454432   


Q ss_pred             cccccCCceeeccccccceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhh--ccCCCCCEEEEEcC-CHHH
Q 016660          138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGL-GSIG  214 (385)
Q Consensus       138 ~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~--~~~~~~~~VlI~G~-g~vG  214 (385)
                                     .|+|+||+++++++++++|+++++++||++++++.|||+++...  +++++|++|||+|+ |++|
T Consensus       178 ---------------~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG  242 (456)
T 3krt_A          178 ---------------FGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLG  242 (456)
T ss_dssp             ---------------SCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHH
T ss_pred             ---------------CCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHH
Confidence                           13999999999999999999999999999999999999988654  78999999999998 9999


Q ss_pred             HHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCch-----------------hHHHHhhCC-CccEEEEc
Q 016660          215 LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK-----------------SIIIDMTDG-GADYCFEC  276 (385)
Q Consensus       215 ~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~-----------------~~i~~~~~g-~~d~vid~  276 (385)
                      ++++|+|+.+|+ +|++++++++|+++++++|+++++++.+.+..                 +.+++++++ ++|+|||+
T Consensus       243 ~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~  321 (456)
T 3krt_A          243 SYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEH  321 (456)
T ss_dssp             HHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEEC
T ss_pred             HHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEc
Confidence            999999999999 88888899999999999999999999885432                 457888887 99999999


Q ss_pred             cCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCcee
Q 016660          277 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT  356 (385)
Q Consensus       277 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~  356 (385)
                      +|+ ..++.++++++++ |+++.+|... ....+++...++.+++++.|+....+   .++.++++++++|+++  ++++
T Consensus       322 ~G~-~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~l~~~g~l~--~~i~  393 (456)
T 3krt_A          322 PGR-ETFGASVFVTRKG-GTITTCASTS-GYMHEYDNRYLWMSLKRIIGSHFANY---REAWEANRLIAKGRIH--PTLS  393 (456)
T ss_dssp             SCH-HHHHHHHHHEEEE-EEEEESCCTT-CSEEEEEHHHHHHTTCEEEECCSCCH---HHHHHHHHHHHTTSSC--CCEE
T ss_pred             CCc-hhHHHHHHHhhCC-cEEEEEecCC-CcccccCHHHHHhcCeEEEEeccCCH---HHHHHHHHHHHcCCcc--ccee
Confidence            998 5599999999997 9999999754 34456777778888999999865443   5677899999999765  5688


Q ss_pred             eeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          357 HEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       357 ~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                      ++|+|+++++|++.+.+++. +|+||.+.
T Consensus       394 ~~~~l~~~~eA~~~l~~~~~~GKvvv~~~  422 (456)
T 3krt_A          394 KVYSLEDTGQAAYDVHRNLHQGKVGVLCL  422 (456)
T ss_dssp             EEEEGGGHHHHHHHHHTTCSSSEEEEESS
T ss_pred             EEEcHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            99999999999999988776 59998763

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=2.5e-54  Score=411.92  Aligned_cols=331  Identities=18%  Similarity=0.241  Sum_probs=281.3

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCC-CeEEEEEeeeeccccccccccc--CCCCCCC---CccccCceeEEEEEeCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNS-HEVRVRIICTSLCHSDVTFWKM--KDFPAVF---PRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~-~eVlVkv~a~~i~~~D~~~~~g--~~~~~~~---p~~~G~e~~G~V~~vG~~v~   90 (385)
                      |||+++.+++.++++.++|.|+|++ +||+|||.|++||++|++++.|  .++...+   |.++|||++|+|++  ++ +
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~-~   77 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY-H   77 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC-S
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC-C
Confidence            7999999998669999999999999 9999999999999999999988  5543456   89999999999999  77 8


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCC--CCC-CCCcccccccCCceeeccccccceeeeEeeccCce
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP--WMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~--g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~  167 (385)
                      +|++||||++.+..+|+.|.+|++|++++|.....   +  |.. .+                   |+|+||++++++.+
T Consensus        78 ~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~~~g~~~~~-------------------G~~aey~~v~~~~~  135 (366)
T 2cdc_A           78 GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEF---GEAGIHKMD-------------------GFMREWWYDDPKYL  135 (366)
T ss_dssp             SCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCC---EEETTBEEC-------------------CSCBSEEEECGGGE
T ss_pred             CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCc---ccCCccCCC-------------------CceeEEEEechHHe
Confidence            99999999999999999999999999999976543   2  322 23                   49999999999999


Q ss_pred             EECCCCCCcccccccccchhhhhhhhh--h--hccCC--C-------CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 016660          168 VKVDPTVPPNRACLLSCGVSTGVGAAW--R--TANVE--V-------GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (385)
Q Consensus       168 ~~iP~~l~~~~aa~l~~~~~ta~~al~--~--~~~~~--~-------~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~  234 (385)
                      +++|++++ ++|| ++.++.|||+++.  +  .++++  +       +++|||+|+|++|++++|+|+.+|+ +|+++++
T Consensus       136 ~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~  212 (366)
T 2cdc_A          136 VKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANR  212 (366)
T ss_dssp             EEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             EECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            99999999 7765 6678999999886  4  77888  8       9999999999999999999999999 9999999


Q ss_pred             Cc---hHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHH-HHHHHHhccCCceEEEeccCCCCCccc
Q 016660          235 IS---EKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLV-QEAYACCRKGWGKTIVLGVDQPGSQLS  310 (385)
Q Consensus       235 ~~---~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~-~~~~~~l~~~~G~~v~~g~~~~~~~~~  310 (385)
                      ++   ++.++++++|++++ | ++ +..+.+.+ +.+++|+|||++|....+ +.++++++++ |+++.+|.... ....
T Consensus       213 ~~~~~~~~~~~~~~ga~~v-~-~~-~~~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~  286 (366)
T 2cdc_A          213 REPTEVEQTVIEETKTNYY-N-SS-NGYDKLKD-SVGKFDVIIDATGADVNILGNVIPLLGRN-GVLGLFGFSTS-GSVP  286 (366)
T ss_dssp             SCCCHHHHHHHHHHTCEEE-E-CT-TCSHHHHH-HHCCEEEEEECCCCCTHHHHHHGGGEEEE-EEEEECSCCCS-CEEE
T ss_pred             CccchHHHHHHHHhCCcee-c-hH-HHHHHHHH-hCCCCCEEEECCCChHHHHHHHHHHHhcC-CEEEEEecCCC-Cccc
Confidence            98   89999999999988 8 65 55555666 546899999999998668 9999999997 99999997543 2356


Q ss_pred             ccHHH---HhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCC----CCCceeeeeecchHHHHHHH--HhcCCeeEEEE
Q 016660          311 LSSFE---VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE----LDKFVTHEMKFEEINSAFDL--LIKGKCLRCVI  381 (385)
Q Consensus       311 ~~~~~---~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~i~~~~~l~~~~~a~~~--l~~~~~~k~vi  381 (385)
                      ++...   ++.+++++.|+...   ..++++++++++++|+++    ++++++++|+|+++++||+.  ++++..+|+||
T Consensus       287 ~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~~~gKvvi  363 (366)
T 2cdc_A          287 LDYKTLQEIVHTNKTIIGLVNG---QKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIRI  363 (366)
T ss_dssp             EEHHHHHHHHHTTCEEEECCCC---CHHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHCCCTTCCEEEE
T ss_pred             cChhhhHHHHhcCcEEEEecCC---CHHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhhhcCCceEEEE
Confidence            67666   78899999998542   246799999999999876    78889999999999999999  56555569999


Q ss_pred             EeC
Q 016660          382 WMG  384 (385)
Q Consensus       382 ~~~  384 (385)
                      +++
T Consensus       364 ~~~  366 (366)
T 2cdc_A          364 LWE  366 (366)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            874

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=1.3e-53  Score=417.51  Aligned_cols=343  Identities=17%  Similarity=0.160  Sum_probs=288.4

Q ss_pred             CCCCeeeeEEEeccCC-------------CCcEEEEeecCCCCCCeEEEEEeeeecccccccccc---------------
Q 016660           11 AGKPIQCRAAIATAPG-------------EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---------------   62 (385)
Q Consensus        11 ~~~~~~~~a~~~~~~~-------------~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~---------------   62 (385)
                      ..+|.+|||+++++++             +++++.++|.|+|+++||+|||.+++||++|++...               
T Consensus        19 ~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~   98 (447)
T 4a0s_A           19 APVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNAR   98 (447)
T ss_dssp             SCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHT
T ss_pred             cCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhcc
Confidence            4578899999999998             249999999999999999999999999999975321               


Q ss_pred             -cCCCC-CCCC-ccccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 016660           63 -MKDFP-AVFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRF  139 (385)
Q Consensus        63 -g~~~~-~~~p-~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~  139 (385)
                       +.+.. ..+| .++|||++|+|+++|++|++|++||||++.+...|+.|. |.++..+.|.....   +|+...     
T Consensus        99 ~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~-~~~~~~~~c~~~~~---~G~~~~-----  169 (447)
T 4a0s_A           99 QGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEP-ATHGDGMLGTEQRA---WGFETN-----  169 (447)
T ss_dssp             TCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSG-GGGTCTTCSTTCEE---TTTTSS-----
T ss_pred             cCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccc-cccccccccccccc---ccccCC-----
Confidence             22111 2456 699999999999999999999999999999988887776 44577889977665   454432     


Q ss_pred             cccCCceeeccccccceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhh--hccCCCCCEEEEEcC-CHHHHH
Q 016660          140 KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGL-GSIGLA  216 (385)
Q Consensus       140 ~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~--~~~~~~~~~VlI~G~-g~vG~~  216 (385)
                                   .|+|+||+++++++++++|+++++++||++++++.|||+++..  .+++++|++|||+|+ |++|++
T Consensus       170 -------------~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~  236 (447)
T 4a0s_A          170 -------------FGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSY  236 (447)
T ss_dssp             -------------SCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHH
T ss_pred             -------------CCceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHH
Confidence                         1399999999999999999999999999999999999998864  388999999999998 999999


Q ss_pred             HHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCc------------------hhHHHHhhCCCccEEEEccC
Q 016660          217 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD------------------KSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       217 ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~------------------~~~i~~~~~g~~d~vid~~g  278 (385)
                      ++|+|+..|+ +|++++++++++++++++|+++++++.+.+.                  .+.+++.+++++|+|||++|
T Consensus       237 a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G  315 (447)
T 4a0s_A          237 AIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTG  315 (447)
T ss_dssp             HHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSC
T ss_pred             HHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCC
Confidence            9999999999 8888889999999999999999998765332                  33467777448999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeee
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHE  358 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~  358 (385)
                      ... ++.++++++++ |+++.+|... .....++...++.+++++.|+....   .+++.++++++++|++.  ++++++
T Consensus       316 ~~~-~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~--~~i~~~  387 (447)
T 4a0s_A          316 RVT-FGLSVIVARRG-GTVVTCGSSS-GYLHTFDNRYLWMKLKKIVGSHGAN---HEEQQATNRLFESGAVV--PAMSAV  387 (447)
T ss_dssp             HHH-HHHHHHHSCTT-CEEEESCCTT-CSEEEEEHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSSC--CCEEEE
T ss_pred             chH-HHHHHHHHhcC-CEEEEEecCC-CcccccCHHHHHhCCCEEEecCCCC---HHHHHHHHHHHHcCCcc--cceeEE
Confidence            864 89999999997 9999999753 3345677777888999999986443   25688999999999764  578999


Q ss_pred             eecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          359 MKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       359 ~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                      |+|+++++||+.+.+++. +|++|.+.
T Consensus       388 ~~l~~~~~A~~~~~~~~~~GKvvv~~~  414 (447)
T 4a0s_A          388 YPLAEAAEACRVVQTSRQVGKVAVLCM  414 (447)
T ss_dssp             EEGGGHHHHHHHHHTTCCSSEEEEESS
T ss_pred             EcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            999999999999988776 59998764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=9.2e-53  Score=399.04  Aligned_cols=319  Identities=20%  Similarity=0.228  Sum_probs=278.0

Q ss_pred             CCCCeeeeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCC
Q 016660           11 AGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGE   87 (385)
Q Consensus        11 ~~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~   87 (385)
                      +.+|.+|||+++.+++.|  +++.+.|.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+
T Consensus        23 ~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~  102 (353)
T 4dup_A           23 MSLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGP  102 (353)
T ss_dssp             CCCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECT
T ss_pred             CCCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECC
Confidence            345778999999998765  899999999999999999999999999999999988764 45789999999999999999


Q ss_pred             CCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCce
Q 016660           88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (385)
Q Consensus        88 ~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~  167 (385)
                      ++++|++||||+..                              ..+                   |+|+||++++++.+
T Consensus       103 ~v~~~~vGdrV~~~------------------------------~~~-------------------G~~aey~~v~~~~~  133 (353)
T 4dup_A          103 GVSGYAVGDKVCGL------------------------------ANG-------------------GAYAEYCLLPAGQI  133 (353)
T ss_dssp             TCCSCCTTCEEEEE------------------------------CSS-------------------CCSBSEEEEEGGGE
T ss_pred             CCCCCCCCCEEEEe------------------------------cCC-------------------CceeeEEEEcHHHc
Confidence            99999999999642                              112                   39999999999999


Q ss_pred             EECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC
Q 016660          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (385)
Q Consensus       168 ~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg  246 (385)
                      +++|+++++++||++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|++++++++++++++++|
T Consensus       134 ~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lG  212 (353)
T 4dup_A          134 LPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLG  212 (353)
T ss_dssp             EECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHT
T ss_pred             EeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcC
Confidence            9999999999999999999999999888899999999999965 9999999999999999 8999999999999999999


Q ss_pred             CCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEe
Q 016660          247 VTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  326 (385)
Q Consensus       247 ~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  326 (385)
                      ++.++++++.+..+.+.+.+++++|++||++|++. ++.++++++++ |+++.+|.........++...++.+++++.|+
T Consensus       213 a~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~  290 (353)
T 4dup_A          213 AKRGINYRSEDFAAVIKAETGQGVDIILDMIGAAY-FERNIASLAKD-GCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGS  290 (353)
T ss_dssp             CSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGGG-HHHHHHTEEEE-EEEEECCCTTCSEEEEEECHHHHHTTCEEEEC
T ss_pred             CCEEEeCCchHHHHHHHHHhCCCceEEEECCCHHH-HHHHHHHhccC-CEEEEEEecCCCcccCCCHHHHHhcCceEEEE
Confidence            99999998877767788888449999999999875 89999999997 99999997643322227777888899999999


Q ss_pred             eecCCCCC-------CcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          327 LFGGLKAK-------SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       327 ~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      .+..+...       +.++++++++++|++  +++++++|+|+++++||+.+++++. +|+||++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          291 TMRPRTAEEKRAIRDDLLSEVWPLLEAGTV--APVIHKVFAFEDVADAHRLLEEGSHVGKVMLTV  353 (353)
T ss_dssp             CSTTSCHHHHHHHHHHHHHHTHHHHHHTSS--CCCEEEEEEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred             eccccchhhhHHHHHHHHHHHHHHHHCCCc--cCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            76554311       016788999999965  4568899999999999999988875 5999975

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=1.7e-52  Score=394.54  Aligned_cols=317  Identities=21%  Similarity=0.249  Sum_probs=277.7

Q ss_pred             CCCeeeeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCC
Q 016660           12 GKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (385)
                      .+|.+|||+++.+++.+  +++.+.|.|+|++|||+|||.+++||++|++++.|.++ ..+|.++|||++|+|+++|+++
T Consensus         4 ~~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~P~i~G~e~~G~V~~vG~~v   82 (334)
T 3qwb_A            4 TIPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYP-CEKPYVLGREASGTVVAKGKGV   82 (334)
T ss_dssp             -CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSC-CCSSEECCSEEEEEEEEECTTC
T ss_pred             CCchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCC-CCCCCccccceEEEEEEECCCC
Confidence            35678999999999876  89999999999999999999999999999999988765 4579999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeec-cCceE
Q 016660           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVV  168 (385)
Q Consensus        90 ~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~-~~~~~  168 (385)
                      ++|++||||+..                                                  ..|+|+||++++ ++.++
T Consensus        83 ~~~~~GdrV~~~--------------------------------------------------~~G~~aey~~v~~~~~~~  112 (334)
T 3qwb_A           83 TNFEVGDQVAYI--------------------------------------------------SNSTFAQYSKISSQGPVM  112 (334)
T ss_dssp             CSCCTTCEEEEE--------------------------------------------------CSSCSBSEEEEETTSSEE
T ss_pred             CCCCCCCEEEEe--------------------------------------------------eCCcceEEEEecCcceEE
Confidence            999999999743                                                  124999999999 99999


Q ss_pred             ECCCCCCccc---ccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH
Q 016660          169 KVDPTVPPNR---ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (385)
Q Consensus       169 ~iP~~l~~~~---aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  244 (385)
                      ++|+++++++   ||++++.+.|||+++.+..+++++++|||+|+ |++|++++|+|+..|+ +|+++++++++++++++
T Consensus       113 ~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  191 (334)
T 3qwb_A          113 KLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE  191 (334)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             ECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            9999999999   88888899999998888889999999999995 9999999999999999 89999999999999999


Q ss_pred             cCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEE
Q 016660          245 FGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKIL  323 (385)
Q Consensus       245 lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i  323 (385)
                      +|+++++++++.+..+.+.+.+++ ++|++||++|... ++.++++++++ |+++.+|... ....+++...++.|++++
T Consensus       192 ~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~~~  268 (334)
T 3qwb_A          192 YGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKDT-FEISLAALKRK-GVFVSFGNAS-GLIPPFSITRLSPKNITL  268 (334)
T ss_dssp             TTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGGGG-HHHHHHHEEEE-EEEEECCCTT-CCCCCBCGGGGTTTTCEE
T ss_pred             cCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhccC-CEEEEEcCCC-CCCCCcchhhhhhCceEE
Confidence            999999999887777778888877 8999999999854 99999999997 9999999754 233356666778899999


Q ss_pred             EEeeecCCCC-CC----cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          324 MGSLFGGLKA-KS----DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       324 ~g~~~~~~~~-~~----~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                      .++++..+.. .+    .++++++++++|++++.  +++.|+|+++++||+.+++++. +|+||++++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~q  334 (334)
T 3qwb_A          269 VRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIK--IYKTYPLRDYRTAAADIESRKTVGKLVLEIPQ  334 (334)
T ss_dssp             ECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCC--EEEEEEGGGHHHHHHHHHTTCCCBEEEEECCC
T ss_pred             EEEEeccccCCHHHHHHHHHHHHHHHHCCCccCc--eeeEEcHHHHHHHHHHHHhCCCceEEEEecCC
Confidence            9876554432 12    24688999999987765  8899999999999999988876 599999864

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=2.9e-52  Score=398.09  Aligned_cols=326  Identities=19%  Similarity=0.181  Sum_probs=270.1

Q ss_pred             CCCeeeeEEEeccCCCCcEEE-EeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCC
Q 016660           12 GKPIQCRAAIATAPGEPLVID-EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~~~l~~~-~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      .+|.+|||+++.+++. +++. ++|.|+|+++||+|||.+++||++|++++.+.   ..+|.++|||++|+|+++|++|+
T Consensus         7 ~~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~p~v~G~e~~G~V~~vG~~v~   82 (371)
T 3gqv_A            7 IPPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---ATPWAFLGTDYAGTVVAVGSDVT   82 (371)
T ss_dssp             CCCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC--------CCTTSCCCSEEEEEEEEECTTCC
T ss_pred             CCchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC---CCCCccCccccEEEEEEeCCCCC
Confidence            3567899999999976 9998 99999999999999999999999999988763   34689999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      +|++||||+       +.|..|..+.               ..+                   |+|+||++++++.++++
T Consensus        83 ~~~~GdrV~-------~~~~~~~~~~---------------~~~-------------------G~~aey~~v~~~~~~~~  121 (371)
T 3gqv_A           83 HIQVGDRVY-------GAQNEMCPRT---------------PDQ-------------------GAFSQYTVTRGRVWAKI  121 (371)
T ss_dssp             SCCTTCEEE-------EECCTTCTTC---------------TTC-------------------CSSBSEEECCTTCEEEC
T ss_pred             CCCCCCEEE-------EeccCCCCCC---------------CCC-------------------CcCcCeEEEchhheEEC
Confidence            999999994       4455554331               122                   39999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhh-ccC-----------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRT-ANV-----------EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~-~~~-----------~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      |+++++++||++++++.|||+++.+. .++           +++++|||+|+ |++|++++|+|+.+|+ +|+++. +++
T Consensus       122 P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~  199 (371)
T 3gqv_A          122 PKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPH  199 (371)
T ss_dssp             CTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGG
T ss_pred             CCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHH
Confidence            99999999999999999999988776 553           89999999998 9999999999999999 888885 799


Q ss_pred             HHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHh-ccCCceEEEeccCCC----CCccc--
Q 016660          238 KFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACC-RKGWGKTIVLGVDQP----GSQLS--  310 (385)
Q Consensus       238 ~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~----~~~~~--  310 (385)
                      |+++++++|+++++|+++.+..+.+++++++++|+|||++|++.+++.+++++ +++ |+++.+|....    .....  
T Consensus       200 ~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~~~~~~  278 (371)
T 3gqv_A          200 NFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAG-GHYVSLNPFPEHAATRKMVTTD  278 (371)
T ss_dssp             GHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTC-EEEEESSCCCC---CCSCEEEE
T ss_pred             HHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCC-CEEEEEecCcccccccccccee
Confidence            99999999999999999877777788888888999999999988899999999 586 99999996432    11122  


Q ss_pred             cc-HHHHhhcCcEEEEeeecCCCC------CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-e-EEEE
Q 016660          311 LS-SFEVLHSGKILMGSLFGGLKA------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-L-RCVI  381 (385)
Q Consensus       311 ~~-~~~~~~~~~~i~g~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~-k~vi  381 (385)
                      +. ...++.|++++.|+.......      .+.++++++++++|++++.+++++.|+|+++++||+.+.+++. + |+||
T Consensus       279 ~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~Gkkvvv  358 (371)
T 3gqv_A          279 WTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLVV  358 (371)
T ss_dssp             ECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSSCEEEE
T ss_pred             eeeeeeeccccccccccccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCceEEEEE
Confidence            11 235667888888774332211      1124478899999999999888888999999999999998875 4 8888


Q ss_pred             EeCC
Q 016660          382 WMGE  385 (385)
Q Consensus       382 ~~~~  385 (385)
                      ++++
T Consensus       359 ~~~~  362 (371)
T 3gqv_A          359 RLEG  362 (371)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            7754

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.2e-52  Score=396.51  Aligned_cols=316  Identities=22%  Similarity=0.248  Sum_probs=268.4

Q ss_pred             CCCCCeeeeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeC
Q 016660           10 TAGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVG   86 (385)
Q Consensus        10 ~~~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG   86 (385)
                      ..+.|.+|||+++.+++.|  +++.++|.|+|++|||+|||.+++||++|+++++|.++. ..+|.++|||++|+|+++|
T Consensus        15 ~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG   94 (342)
T 4eye_A           15 QTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAP   94 (342)
T ss_dssp             ---CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECC
T ss_pred             cccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEEC
Confidence            4556789999999998766  999999999999999999999999999999999987753 5689999999999999999


Q ss_pred             CCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCc
Q 016660           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (385)
Q Consensus        87 ~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~  166 (385)
                      ++++ |++||||+...                              .+                   |+|+||++++++.
T Consensus        95 ~~v~-~~vGDrV~~~~------------------------------~~-------------------G~~aey~~v~~~~  124 (342)
T 4eye_A           95 EGSG-IKPGDRVMAFN------------------------------FI-------------------GGYAERVAVAPSN  124 (342)
T ss_dssp             TTSS-CCTTCEEEEEC------------------------------SS-------------------CCSBSEEEECGGG
T ss_pred             CCCC-CCCCCEEEEec------------------------------CC-------------------CcceEEEEEcHHH
Confidence            9999 99999997431                              12                   3999999999999


Q ss_pred             eEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc
Q 016660          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (385)
Q Consensus       167 ~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l  245 (385)
                      ++++|+++++++||++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|++++++++++++++++
T Consensus       125 ~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~  203 (342)
T 4eye_A          125 ILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV  203 (342)
T ss_dssp             EEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH
T ss_pred             eEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc
Confidence            99999999999999999999999999888899999999999998 9999999999999999 899999999999999999


Q ss_pred             CCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEE
Q 016660          246 GVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  324 (385)
Q Consensus       246 g~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  324 (385)
                      |++++++++ .+....+++.+++ ++|++||++|++. ++.++++++++ |+++.+|..... ...++...++.+++++.
T Consensus       204 ga~~v~~~~-~~~~~~v~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~  279 (342)
T 4eye_A          204 GADIVLPLE-EGWAKAVREATGGAGVDMVVDPIGGPA-FDDAVRTLASE-GRLLVVGFAAGG-IPTIKVNRLLLRNASLI  279 (342)
T ss_dssp             TCSEEEESS-TTHHHHHHHHTTTSCEEEEEESCC--C-HHHHHHTEEEE-EEEEEC-----------CCCCGGGTTCEEE
T ss_pred             CCcEEecCc-hhHHHHHHHHhCCCCceEEEECCchhH-HHHHHHhhcCC-CEEEEEEccCCC-CCccCHHHHhhcCCEEE
Confidence            999999988 5666668888888 9999999999875 89999999997 999999975422 23455556778999999


Q ss_pred             EeeecCCC------CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          325 GSLFGGLK------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       325 g~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      |+....+.      ..+.+.++++++++|   ++++++++|+|+++++||+.+.+++. +|+||++
T Consensus       280 g~~~~~~~~~~~~~~~~~~~~~~~l~~~g---l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~P  342 (342)
T 4eye_A          280 GVAWGEFLRTHADYLYETQAGLEKLVAEG---MRPPVSARIPLSEGRQALQDFADGKVYGKMVLVP  342 (342)
T ss_dssp             ECCHHHHHHHCTTHHHHHHHHHHHHHHTT---CCCCEEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             EEehhhhhhcCHHHHHHHHHHHHHHHHcC---CCCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            98754321      123578899999999   55668899999999999999998886 5999874

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=5.1e-52  Score=392.14  Aligned_cols=316  Identities=19%  Similarity=0.240  Sum_probs=271.9

Q ss_pred             CeeeeEEEeccCCCC---cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCC
Q 016660           14 PIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENV   89 (385)
Q Consensus        14 ~~~~~a~~~~~~~~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v   89 (385)
                      +|+|||+++.+++.|   +++.++|.|+|++|||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+++|+++
T Consensus         2 ~~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v   81 (340)
T 3gms_A            2 SLHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFV   81 (340)
T ss_dssp             CCEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTS
T ss_pred             CcccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCC
Confidence            368999999999987   899999999999999999999999999999999998754 5789999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEE
Q 016660           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (385)
Q Consensus        90 ~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~  169 (385)
                      ++|++||||+..                              ..+                   |+|+||++++++.+++
T Consensus        82 ~~~~vGdrV~~~------------------------------~~~-------------------G~~aey~~v~~~~~~~  112 (340)
T 3gms_A           82 SRELIGKRVLPL------------------------------RGE-------------------GTWQEYVKTSADFVVP  112 (340)
T ss_dssp             CGGGTTCEEEEC------------------------------SSS-------------------CSSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEec------------------------------CCC-------------------ccceeEEEcCHHHeEE
Confidence            999999999632                              112                   3999999999999999


Q ss_pred             CCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC
Q 016660          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (385)
Q Consensus       170 iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~  248 (385)
                      +|+++++++||++++.++|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|++++++++++++++++|++
T Consensus       113 vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~  191 (340)
T 3gms_A          113 IPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAA  191 (340)
T ss_dssp             CCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCS
T ss_pred             CCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCc
Confidence            99999999999999999999999988999999999999998 6999999999999999 899999999999999999999


Q ss_pred             eEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhh-cCcEEEEe
Q 016660          249 EFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLH-SGKILMGS  326 (385)
Q Consensus       249 ~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~i~g~  326 (385)
                      +++|+.+.+..+.+++.+++ ++|++|||+|+.. ...++++++++ |+++.+|.... .  .++...+.. .++.+...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~-~--~~~~~~~~~~~~~~~~~~  266 (340)
T 3gms_A          192 YVIDTSTAPLYETVMELTNGIGADAAIDSIGGPD-GNELAFSLRPN-GHFLTIGLLSG-I--QVNWAEIVTKAKVHANIF  266 (340)
T ss_dssp             EEEETTTSCHHHHHHHHTTTSCEEEEEESSCHHH-HHHHHHTEEEE-EEEEECCCTTS-C--CCCHHHHHHTSCCEEEEC
T ss_pred             EEEeCCcccHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHHhcCC-CEEEEEeecCC-C--CCCHHHhhhcccceEEEE
Confidence            99999887777778888888 9999999999988 56677999997 99999997542 2  334334332 45555554


Q ss_pred             eecCC-------CCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC-e-eEEEEEeCC
Q 016660          327 LFGGL-------KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-C-LRCVIWMGE  385 (385)
Q Consensus       327 ~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~-~-~k~vi~~~~  385 (385)
                      .+..+       ...++++++++++++|++++.+ +++.|+|+++++||+.+.+++ . +|++|++.+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~-i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~~~  333 (340)
T 3gms_A          267 HLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VHSTYELADVKAAVDVVQSAEKTKGKVFLTSYE  333 (340)
T ss_dssp             CHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCC-EEEEEEGGGHHHHHHHHHCTTCCSSEEEEECC-
T ss_pred             EehhhhhhcCHHHHHHHHHHHHHHHHcCCCcccc-ccEEEeHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            32211       1135688999999999888765 679999999999999999887 4 799998754

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=3.8e-51  Score=387.03  Aligned_cols=314  Identities=20%  Similarity=0.205  Sum_probs=266.5

Q ss_pred             eeeeEEEeccCC-----CCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCC
Q 016660           15 IQCRAAIATAPG-----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (385)
Q Consensus        15 ~~~~a~~~~~~~-----~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (385)
                      |+|||+++++++     +.+++.++|.|+|++|||+|||.+++||++|++++.|.  ...+|.++|||++|+|+++|+++
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~--~~~~p~i~G~e~~G~V~~vG~~v   78 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD--VSKAPRVLGFDAIGVVESVGNEV   78 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC--CSSSCBCCCCCEEEEEEEECTTC
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC--CCCCCcCcCCccEEEEEEeCCCC
Confidence            579999999876     34999999999999999999999999999999998876  34679999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEE
Q 016660           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (385)
Q Consensus        90 ~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~  169 (385)
                      ++|++||||+...                           +...+                   |+|+||++++++.+++
T Consensus        79 ~~~~~GdrV~~~~---------------------------~~~~~-------------------G~~aey~~v~~~~~~~  112 (346)
T 3fbg_A           79 TMFNQGDIVYYSG---------------------------SPDQN-------------------GSNAEYQLINERLVAK  112 (346)
T ss_dssp             CSCCTTCEEEECC---------------------------CTTSC-------------------CSSBSEEEEEGGGEEE
T ss_pred             CcCCCCCEEEEcC---------------------------CCCCC-------------------cceeEEEEEChHHeEE
Confidence            9999999997531                           11122                   3999999999999999


Q ss_pred             CCCCCCcccccccccchhhhhhhhhhhccCC------CCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH
Q 016660          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVE------VGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (385)
Q Consensus       170 iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~------~~~~VlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  242 (385)
                      +|+++++++||++++++.|||+++.+.++++      ++++|||+| +|++|++++|+|+.+|+ +|+++++++++++++
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~  191 (346)
T 3fbg_A          113 APKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWT  191 (346)
T ss_dssp             CCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHH
T ss_pred             CCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            9999999999999999999999998888888      999999995 59999999999999999 999999999999999


Q ss_pred             HHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcE
Q 016660          243 KRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKI  322 (385)
Q Consensus       243 ~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  322 (385)
                      +++|+++++++++ +..+.+++..++++|+||||+|++..++.++++++++ |+++.++..    ..+++...+..++++
T Consensus       192 ~~lGa~~vi~~~~-~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~-G~iv~~~~~----~~~~~~~~~~~~~~~  265 (346)
T 3fbg_A          192 KKMGADIVLNHKE-SLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPR-GHIATIVAF----ENDQDLNALKPKSLS  265 (346)
T ss_dssp             HHHTCSEEECTTS-CHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEE-EEEEESSCC----SSCBCGGGGTTTTCE
T ss_pred             HhcCCcEEEECCc-cHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccC-CEEEEECCC----CCCCccccccccceE
Confidence            9999999999876 4445566663338999999999988789999999997 999998753    234555567778999


Q ss_pred             EEEeeecCC---CC------CCcHHHHHHHHHcCCCCCCCceeeee---ecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          323 LMGSLFGGL---KA------KSDIPILLKRYMDKELELDKFVTHEM---KFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       323 i~g~~~~~~---~~------~~~~~~~~~~~~~g~~~~~~~i~~~~---~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                      +.++.+...   ..      .+.+.++++++++|++.  +.++++|   +|+++++||+.+++++. +|+||++++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~  339 (346)
T 3fbg_A          266 FSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQ--PTTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNE  339 (346)
T ss_dssp             EEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSC--CCEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC--
T ss_pred             EEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEE--CCccceecCCCHHHHHHHHHHHhcCCcceEEEEecCC
Confidence            998754321   10      23578899999999765  4577777   89999999999998886 599998753

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=3e-51  Score=389.83  Aligned_cols=317  Identities=16%  Similarity=0.139  Sum_probs=267.5

Q ss_pred             CCCeeeeEEEeccC---CCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeC
Q 016660           12 GKPIQCRAAIATAP---GEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVG   86 (385)
Q Consensus        12 ~~~~~~~a~~~~~~---~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG   86 (385)
                      ..+|+|||+++.++   +.|  +++.++|.|+|+++||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|
T Consensus        18 ~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG   97 (363)
T 4dvj_A           18 LYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAVG   97 (363)
T ss_dssp             -CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEEC
T ss_pred             hhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEeC
Confidence            34578999999876   222  9999999999999999999999999999999999987666789999999999999999


Q ss_pred             CCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCc
Q 016660           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (385)
Q Consensus        87 ~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~  166 (385)
                      ++|++|++||||+...                           +...+                   |+|+||++++++.
T Consensus        98 ~~v~~~~vGdrV~~~~---------------------------~~~~~-------------------G~~aey~~v~~~~  131 (363)
T 4dvj_A           98 PDVTLFRPGDEVFYAG---------------------------SIIRP-------------------GTNAEFHLVDERI  131 (363)
T ss_dssp             TTCCSCCTTCEEEECC---------------------------CTTSC-------------------CSCBSEEEEEGGG
T ss_pred             CCCCCCCCCCEEEEcc---------------------------CCCCC-------------------ccceEEEEeCHHH
Confidence            9999999999997531                           11222                   3999999999999


Q ss_pred             eEECCCCCCcccccccccchhhhhhhhhhhccCC-----CCCEEEEEc-CCHHHHHHHHHHHH-cCCCEEEEEcCCchHH
Q 016660          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE-----VGSTVVIFG-LGSIGLAVAEGARL-CGATRIIGVDVISEKF  239 (385)
Q Consensus       167 ~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~-----~~~~VlI~G-~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~  239 (385)
                      ++++|+++++++||++++++.|||+++.+.++++     ++++|||+| +|++|++++|+||. .|+ +|++++++++|+
T Consensus       132 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~  210 (363)
T 4dvj_A          132 VGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQ  210 (363)
T ss_dssp             CEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHH
T ss_pred             eeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHH
Confidence            9999999999999999999999999988888888     899999998 59999999999998 477 999999999999


Q ss_pred             HHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhc
Q 016660          240 EIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS  319 (385)
Q Consensus       240 ~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~  319 (385)
                      ++++++|+++++|+++ +..+.+++..++++|+||||+|++..++.++++++++ |+++.+|..     ..++...++.+
T Consensus       211 ~~~~~lGad~vi~~~~-~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~-----~~~~~~~~~~k  283 (363)
T 4dvj_A          211 EWVKSLGAHHVIDHSK-PLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQ-GRFCLIDDP-----SAFDIMLFKRK  283 (363)
T ss_dssp             HHHHHTTCSEEECTTS-CHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTT-CEEEECSCC-----SSCCGGGGTTT
T ss_pred             HHHHHcCCCEEEeCCC-CHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCC-CEEEEECCC-----CccchHHHhhc
Confidence            9999999999999876 4445566664448999999999987799999999997 999999642     24556667788


Q ss_pred             CcEEEEeeecCC-----CC----CCcHHHHHHHHHcCCCCCCCceeeee---ecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          320 GKILMGSLFGGL-----KA----KSDIPILLKRYMDKELELDKFVTHEM---KFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       320 ~~~i~g~~~~~~-----~~----~~~~~~~~~~~~~g~~~~~~~i~~~~---~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                      ++++.++.....     ..    .+.++++++++++|++.+  .+++.+   +++++++||+.+.+++. +|+||++.
T Consensus       284 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~~  359 (363)
T 4dvj_A          284 AVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRT--TLTNRLSPINAANLKQAHALVESGTARGKVVIEGF  359 (363)
T ss_dssp             TCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCC--CEEEEECSCSHHHHHHHHHHHHHTCCCSEEEEECS
T ss_pred             cceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeec--cccceecCCCHHHHHHHHHHHHhCCCceEEEEeCc
Confidence            999998654221     00    235788999999997764  466665   99999999999998886 59999874

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=4.1e-51  Score=383.54  Aligned_cols=313  Identities=20%  Similarity=0.208  Sum_probs=272.5

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      |||+++++++.|  +++.+.|.|+|++|||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++|++
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~   81 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKV   81 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999999876  899999999999999999999999999999999998776678999999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      ||||+...                             ..+                   |+|+||++++++.++++|+++
T Consensus        82 GdrV~~~~-----------------------------~~~-------------------G~~aey~~v~~~~~~~~P~~~  113 (325)
T 3jyn_A           82 GDRVAYGT-----------------------------GPL-------------------GAYSEVHVLPEANLVKLADSV  113 (325)
T ss_dssp             TCEEEESS-----------------------------SSS-------------------CCSBSEEEEEGGGEEECCTTS
T ss_pred             CCEEEEec-----------------------------CCC-------------------ccccceEEecHHHeEECCCCC
Confidence            99997431                             112                   399999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      ++++||++++...|+|+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|++++++++++++++++|+++++|+
T Consensus       114 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~  192 (325)
T 3jyn_A          114 SFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDY  192 (325)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred             CHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeC
Confidence            999999999999999999888889999999999995 9999999999999999 89999999999999999999999999


Q ss_pred             CCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhc-CcEEEEeeecCC
Q 016660          254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS-GKILMGSLFGGL  331 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~i~g~~~~~~  331 (385)
                      .+.+..+.+++.+++ ++|++||++|+.. ++.++++++++ |+++.+|..... ...++...++.+ ++.+.+..+..+
T Consensus       193 ~~~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  269 (325)
T 3jyn_A          193 SHEDVAKRVLELTDGKKCPVVYDGVGQDT-WLTSLDSVAPR-GLVVSFGNASGP-VSGVNLGILAQKDSVYVTRPTLGSY  269 (325)
T ss_dssp             TTSCHHHHHHHHTTTCCEEEEEESSCGGG-HHHHHTTEEEE-EEEEECCCTTCC-CCSCCTHHHHHTTSCEEECCCHHHH
T ss_pred             CCccHHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhcCC-CEEEEEecCCCC-CCCCCHHHHhhcCcEEEEeeeeeee
Confidence            887777778888887 8999999999855 89999999997 999999976432 235666666666 567766543322


Q ss_pred             C-CCCc----HHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          332 K-AKSD----IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       332 ~-~~~~----~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      . ..++    ++++++++++|++++.  +++.|+|+++++||+.+++++. +|+||.+
T Consensus       270 ~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          270 ANNAQNLQTMADELFDMLASGKLKVD--GIEQYALKDAAKAQIELSARRTTGSTILIP  325 (325)
T ss_dssp             SCSTTHHHHHHHHHHHHHHTTSSCCC--CCEEEEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCeeCc--cccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            2 2233    3478999999988776  7899999999999999998876 5999864

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=4.3e-51  Score=387.69  Aligned_cols=322  Identities=19%  Similarity=0.234  Sum_probs=270.9

Q ss_pred             CCCCeeeeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCC
Q 016660           11 AGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGE   87 (385)
Q Consensus        11 ~~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~   87 (385)
                      .+.+.+|||+++.+++.+  +++.++|.|+|+++||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+++|+
T Consensus        17 ~~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~   96 (354)
T 2j8z_A           17 NLYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGP   96 (354)
T ss_dssp             ----CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECS
T ss_pred             ccchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECC
Confidence            344578999999998864  889999999999999999999999999999999887654 34789999999999999999


Q ss_pred             CC-CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCc
Q 016660           88 NV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (385)
Q Consensus        88 ~v-~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~  166 (385)
                      +| ++|++||||+...                              .+                   |+|+||++++++.
T Consensus        97 ~v~~~~~vGdrV~~~~------------------------------~~-------------------G~~aey~~v~~~~  127 (354)
T 2j8z_A           97 GCQGHWKIGDTAMALL------------------------------PG-------------------GGQAQYVTVPEGL  127 (354)
T ss_dssp             CC--CCCTTCEEEEEC------------------------------SS-------------------CCSBSEEEEEGGG
T ss_pred             CcCCCCCCCCEEEEec------------------------------CC-------------------CcceeEEEeCHHH
Confidence            99 9999999997431                              12                   3999999999999


Q ss_pred             eEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc
Q 016660          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (385)
Q Consensus       167 ~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l  245 (385)
                      ++++|+++++++||+++++++|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.++++
T Consensus       128 ~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~  206 (354)
T 2j8z_A          128 LMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL  206 (354)
T ss_dssp             EEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred             cEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc
Confidence            99999999999999999999999999888889999999999995 9999999999999999 899999999999999999


Q ss_pred             CCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccH-HHHhhcCcEE
Q 016660          246 GVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS-FEVLHSGKIL  323 (385)
Q Consensus       246 g~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~i  323 (385)
                      |++.++|+.+.+..+.+.+.+++ ++|++||++|+.. ++.++++++++ |+++.+|.... ....++. ..++.+++++
T Consensus       207 g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~~~-~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~i  283 (354)
T 2j8z_A          207 GAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSY-WEKNVNCLALD-GRWVLYGLMGG-GDINGPLFSKLLFKRGSL  283 (354)
T ss_dssp             TCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCGGG-HHHHHHHEEEE-EEEEECCCTTC-SCCCSCHHHHHHHTTCEE
T ss_pred             CCcEEEecCChHHHHHHHHHhcCCCceEEEECCCchH-HHHHHHhccCC-CEEEEEeccCC-CccCCChhHHHHhCCCEE
Confidence            99999998886666667777776 8999999999875 89999999997 99999997542 2345666 6778899999


Q ss_pred             EEeeecCCCCC-------CcHHHHHHHHHcC-CCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          324 MGSLFGGLKAK-------SDIPILLKRYMDK-ELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       324 ~g~~~~~~~~~-------~~~~~~~~~~~~g-~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                      .|+........       +.++++++++++| ++.++++++++|+|+++++||+.+++++. +|+||++++
T Consensus       284 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  354 (354)
T 2j8z_A          284 ITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLELPQ  354 (354)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred             EEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHHhCCCCceEEEecCC
Confidence            99865433210       0123577888888 45556779999999999999999988765 699998763

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=3.1e-51  Score=387.05  Aligned_cols=314  Identities=18%  Similarity=0.196  Sum_probs=267.6

Q ss_pred             CCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC--CCCCCccccCceeEEEEEeCCCCC
Q 016660           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--PAVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        13 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~--~~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      .+.+|||+++.+++.++++.++|.|+|++|||+|||.+++||++|++++.|...  ...+|.++|||++|+|+++|++++
T Consensus         4 ~~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~   83 (343)
T 3gaz_A            4 TTPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVD   83 (343)
T ss_dssp             --CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CchhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCC
Confidence            457899999999998899999999999999999999999999999999988643  256899999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCcccccccCCceeeccccccceeeeEeeccCceEE
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~  169 (385)
                      +|++||||+....                          |.. .+                   |+|+||++++++.+++
T Consensus        84 ~~~vGdrV~~~~~--------------------------g~~~~~-------------------G~~aey~~v~~~~~~~  118 (343)
T 3gaz_A           84 SFRVGDAVFGLTG--------------------------GVGGLQ-------------------GTHAQFAAVDARLLAS  118 (343)
T ss_dssp             SCCTTCEEEEECC--------------------------SSTTCC-------------------CSSBSEEEEEGGGEEE
T ss_pred             CCCCCCEEEEEeC--------------------------CCCCCC-------------------cceeeEEEecHHHeee
Confidence            9999999975321                          100 12                   4999999999999999


Q ss_pred             CCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC
Q 016660          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (385)
Q Consensus       170 iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~  248 (385)
                      +|+++++++||++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|+++ .+++++++++++|++
T Consensus       119 ~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~  196 (343)
T 3gaz_A          119 KPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGAT  196 (343)
T ss_dssp             CCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSE
T ss_pred             CCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCC
Confidence            99999999999999999999999888899999999999995 9999999999999999 89999 889999999999999


Q ss_pred             eEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEee
Q 016660          249 EFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  327 (385)
Q Consensus       249 ~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  327 (385)
                      . ++ .+.+....+.+.+++ ++|+|||++|++. ++.++++++++ |+++.+|...     .++...++.+++++.++.
T Consensus       197 ~-i~-~~~~~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~g~~~-----~~~~~~~~~~~~~~~g~~  267 (343)
T 3gaz_A          197 P-ID-ASREPEDYAAEHTAGQGFDLVYDTLGGPV-LDASFSAVKRF-GHVVSCLGWG-----THKLAPLSFKQATYSGVF  267 (343)
T ss_dssp             E-EE-TTSCHHHHHHHHHTTSCEEEEEESSCTHH-HHHHHHHEEEE-EEEEESCCCS-----CCCCHHHHHTTCEEEECC
T ss_pred             E-ec-cCCCHHHHHHHHhcCCCceEEEECCCcHH-HHHHHHHHhcC-CeEEEEcccC-----ccccchhhhcCcEEEEEE
Confidence            8 77 554556668888887 8999999999855 99999999997 9999998753     345566778899999975


Q ss_pred             ecCC--------CCCCcHHHHHHHHHcCCCCCCCcee-eeeecchHHHHHHHHhcCCe-----eEEEEEeC
Q 016660          328 FGGL--------KAKSDIPILLKRYMDKELELDKFVT-HEMKFEEINSAFDLLIKGKC-----LRCVIWMG  384 (385)
Q Consensus       328 ~~~~--------~~~~~~~~~~~~~~~g~~~~~~~i~-~~~~l~~~~~a~~~l~~~~~-----~k~vi~~~  384 (385)
                      ....        ...++++++++++++|++.  ++++ ++|+|+++++||+.+++++.     +|++++..
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~  336 (343)
T 3gaz_A          268 TLHTLLANEGLAHFGEMLREADALVQTGKLA--PRLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVE  336 (343)
T ss_dssp             TTHHHHHTCSHHHHHHHHHHHHHHHHTTCCC--CCBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC
T ss_pred             eccchhcccchHHHHHHHHHHHHHHHCCCcc--cCccCcEecHHHHHHHHHHHHcCCCcccccceEEEEec
Confidence            3211        0124688899999999765  4577 79999999999999988764     49998753

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.7e-52  Score=391.51  Aligned_cols=315  Identities=18%  Similarity=0.260  Sum_probs=261.8

Q ss_pred             eeeeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCC
Q 016660           15 IQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        15 ~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      |+|||+++++++.+  +++.+.|.|+|++|||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~   81 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG   81 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCS
T ss_pred             ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCC
Confidence            68999999999854  899999999999999999999999999999999988653 578999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      |++||||+...                              .+                   |+|+||++++++.++++|
T Consensus        82 ~~~GdrV~~~~------------------------------~~-------------------G~~aey~~v~~~~~~~iP  112 (349)
T 4a27_A           82 YEIGDRVMAFV------------------------------NY-------------------NAWAEVVCTPVEFVYKIP  112 (349)
T ss_dssp             CCTTCEEEEEC------------------------------SS-------------------CCSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEec------------------------------CC-------------------CcceEEEEecHHHeEECC
Confidence            99999996431                              12                   399999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v  250 (385)
                      +++++++||++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+.+|..+|++++ ++++.++++ +|++++
T Consensus       113 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~  190 (349)
T 4a27_A          113 DDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHL  190 (349)
T ss_dssp             TTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEE
Confidence            999999999999999999999888899999999999998 99999999999999654888886 678888888 999999


Q ss_pred             EeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCC---------------cccccHHH
Q 016660          251 VNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS---------------QLSLSSFE  315 (385)
Q Consensus       251 v~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~---------------~~~~~~~~  315 (385)
                      ++ .+.+..+.+++.+++++|+||||+|++. ++.++++++++ |+++.+|......               ...++...
T Consensus       191 ~~-~~~~~~~~~~~~~~~g~Dvv~d~~g~~~-~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (349)
T 4a27_A          191 FD-RNADYVQEVKRISAEGVDIVLDCLCGDN-TGKGLSLLKPL-GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIK  267 (349)
T ss_dssp             EE-TTSCHHHHHHHHCTTCEEEEEEECC--------CTTEEEE-EEEEEEC-------------------------CHHH
T ss_pred             Ec-CCccHHHHHHHhcCCCceEEEECCCchh-HHHHHHHhhcC-CEEEEECCCcccccccccccccccccccccccCHHH
Confidence            99 5556666677777669999999999988 68999999997 9999999743111               12356667


Q ss_pred             HhhcCcEEEEeeecCCC--------CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          316 VLHSGKILMGSLFGGLK--------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       316 ~~~~~~~i~g~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                      ++.+++++.|+....+.        .+++++++++++++|++  ++++++.|+|+++++||+.+.+++. +|+||++++
T Consensus       268 l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~~~  344 (349)
T 4a27_A          268 LYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKI--KPVVDSLWALEEVKEAMQRIHDRGNIGKLILDVEK  344 (349)
T ss_dssp             HHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSC--CCCEEEEECGGGHHHHHHHHHTTCCSSEEEEETTC
T ss_pred             HhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCc--cccccceECHHHHHHHHHHHHhCCCCceEEEecCC
Confidence            78889999998653211        13568899999999976  4568999999999999999988776 599999864

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=3.1e-52  Score=395.00  Aligned_cols=319  Identities=16%  Similarity=0.150  Sum_probs=266.9

Q ss_pred             CCCCeeeeEEEec--cC---CCCcEEEEe---------ecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCcccc
Q 016660           11 AGKPIQCRAAIAT--AP---GEPLVIDEV---------IVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILG   75 (385)
Q Consensus        11 ~~~~~~~~a~~~~--~~---~~~l~~~~~---------~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G   75 (385)
                      +++|.+|||++++  ++   .+.+++.++         |.|+|++|||+|||.+++||++|+++++|.++. ..+|.++|
T Consensus         5 m~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G   84 (349)
T 3pi7_A            5 MTIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAG   84 (349)
T ss_dssp             CCCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCC
T ss_pred             CCCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCcc
Confidence            3456789999999  22   233888888         999999999999999999999999999987653 46799999


Q ss_pred             CceeEEEEEeCCCC-CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeecccccc
Q 016660           76 HEAIGVVESVGENV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVS  154 (385)
Q Consensus        76 ~e~~G~V~~vG~~v-~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g  154 (385)
                      ||++|+|+++|++| ++|++||||++.                           .|...+|                   
T Consensus        85 ~E~~G~V~~vG~~v~~~~~vGdrV~~~---------------------------~g~~~~G-------------------  118 (349)
T 3pi7_A           85 FEGVGTIVAGGDEPYAKSLVGKRVAFA---------------------------TGLSNWG-------------------  118 (349)
T ss_dssp             SEEEEEEEEECSSHHHHHHTTCEEEEE---------------------------CTTSSCC-------------------
T ss_pred             ceEEEEEEEECCCccCCCCCCCEEEEe---------------------------ccCCCCc-------------------
Confidence            99999999999999 999999999865                           2222333                   


Q ss_pred             ceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhccCCCC-CEEEEEc-CCHHHHHHHHHHHHcCCCEEEEE
Q 016660          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVG-STVVIFG-LGSIGLAVAEGARLCGATRIIGV  232 (385)
Q Consensus       155 ~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~-~~VlI~G-~g~vG~~ai~la~~~G~~~vi~~  232 (385)
                      +|+||++++++.++++|+++++++||++++.++|||+ +.+.++ +++ ++|||+| +|++|++++|+|+.+|+ +|+++
T Consensus       119 ~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~-~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~  195 (349)
T 3pi7_A          119 SWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIA-MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVT  195 (349)
T ss_dssp             SSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHH-HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EEEEE
T ss_pred             cceeeEeechHHeEECCCCCCHHHHhhccccHHHHHH-HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEE
Confidence            9999999999999999999999999999999999996 556666 666 7888885 59999999999999999 89999


Q ss_pred             cCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccc
Q 016660          233 DVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL  311 (385)
Q Consensus       233 ~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~  311 (385)
                      +++++++++++++|+++++|+++.+..+.+++.+++ ++|+||||+|+.. ++.++++++++ |+++.+|... .....+
T Consensus       196 ~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~-~~~~~~  272 (349)
T 3pi7_A          196 VRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTGPL-ASAIFNAMPKR-ARWIIYGRLD-PDATVI  272 (349)
T ss_dssp             ESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCHHH-HHHHHHHSCTT-CEEEECCCSC-CSCCCC
T ss_pred             eCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCChh-HHHHHhhhcCC-CEEEEEeccC-CCCCCC
Confidence            999999999999999999999887777778888887 9999999999887 68999999997 9999999754 234556


Q ss_pred             cH-HHHhhcCcEEEEeeecCCCC------CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEe
Q 016660          312 SS-FEVLHSGKILMGSLFGGLKA------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  383 (385)
Q Consensus       312 ~~-~~~~~~~~~i~g~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~  383 (385)
                      +. ..++.+++++.|++...+..      .++++++++++++|++  +++++++|+|+++++||+.+.++..+|+||++
T Consensus       273 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~gKvvl~p  349 (349)
T 3pi7_A          273 REPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRW--STDVTAVVPLAEAIAWVPAELTKPNGKVFIRP  349 (349)
T ss_dssp             SCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSC--CC-CCEEEEHHHHHHHHHHHHTSSSSCEEEEC
T ss_pred             CchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCc--ccccceEEcHHHHHHHHHHHhCCCCceEEEeC
Confidence            66 77888999999987543211      2457788888999976  45688999999999999977766667999974

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=1.3e-52  Score=392.04  Aligned_cols=302  Identities=19%  Similarity=0.206  Sum_probs=245.3

Q ss_pred             eeeeEEEecc-CCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           15 IQCRAAIATA-PGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        15 ~~~~a~~~~~-~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      +||||+++.+ ++. +++.++|.|+|+++||+|||.+++||++|+++++|.++...+|.++|||++|+|+++|+++++|+
T Consensus         3 ~tMka~~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   81 (315)
T 3goh_A            3 EQHQVWAYQTKTHS-VTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKM   81 (315)
T ss_dssp             CEEEEEEEETTTTE-EEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGG
T ss_pred             cceEEEEEeCCCCe-eEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCC
Confidence            4699999994 544 99999999999999999999999999999999999877677899999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||||+..+                           +...+|                   +|+||++++++.++++|++
T Consensus        82 vGdrV~~~~---------------------------~~~~~G-------------------~~aey~~v~~~~~~~iP~~  115 (315)
T 3goh_A           82 LGRRVAYHT---------------------------SLKRHG-------------------SFAEFTVLNTDRVMTLPDN  115 (315)
T ss_dssp             TTCEEEEEC---------------------------CTTSCC-------------------SSBSEEEEETTSEEECCTT
T ss_pred             CCCEEEEeC---------------------------CCCCCc-------------------ccccEEEEcHHHhccCcCC
Confidence            999998652                           222233                   9999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++++||++++++.|||+++ +.+++++|++|||+|+|++|++++|+||.+|+ +|++++ +++|.++++++|++++++ 
T Consensus       116 ~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~-  191 (315)
T 3goh_A          116 LSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR-  191 (315)
T ss_dssp             SCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES-
T ss_pred             CCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc-
Confidence            99999999999999999988 88999999999999999999999999999999 999998 899999999999999984 


Q ss_pred             CCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC-
Q 016660          254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK-  332 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-  332 (385)
                       +   .+   ++ ++++|+||||+|++. ...++++++++ |+++.+|.....  ..+   ..+.+++.+....+.... 
T Consensus       192 -d---~~---~v-~~g~Dvv~d~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~--~~~---~~~~~~~~~~~~~~~~~~~  256 (315)
T 3goh_A          192 -E---PS---QV-TQKYFAIFDAVNSQN-AAALVPSLKAN-GHIICIQDRIPA--PID---PAFTRTISYHEIALGALHD  256 (315)
T ss_dssp             -S---GG---GC-CSCEEEEECC--------TTGGGEEEE-EEEEEECCC---------------CCSEEEEECGGGHHH
T ss_pred             -C---HH---Hh-CCCccEEEECCCchh-HHHHHHHhcCC-CEEEEEeCCCCc--ccc---chhhhcceeeEEEeecccc
Confidence             2   22   22 448999999999987 58899999997 999999754321  111   123345555544332211 


Q ss_pred             --C-------CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEEeCC
Q 016660          333 --A-------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE  385 (385)
Q Consensus       333 --~-------~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~~k~vi~~~~  385 (385)
                        .       .+.++++++++++|++.  ++++++|+|+++++||+.++ +..+|+||+++|
T Consensus       257 ~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~-~~~gKvvi~~~~  315 (315)
T 3goh_A          257 FGDRQDWQILMQQGEALLTLIAQGKME--IAAPDIFRFEQMIEALDHSE-QTKLKTVLTLNE  315 (315)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTTSSC--CCCCEEEEGGGHHHHHHHHH-HHCCCEEEESCC
T ss_pred             cCChhHHHHHHHHHHHHHHHHHCCCcc--cccceEecHHHHHHHHHHHH-hcCCcEEEEecC
Confidence              1       12467899999999664  56889999999999999998 556799999875

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=3.8e-51  Score=388.61  Aligned_cols=327  Identities=19%  Similarity=0.250  Sum_probs=269.1

Q ss_pred             CCCCCCCcCCCCCeeeeEEEeccCCCC---cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCc
Q 016660            2 DIEKPSNKTAGKPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHE   77 (385)
Q Consensus         2 ~~~~p~~~~~~~~~~~~a~~~~~~~~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e   77 (385)
                      |+..|.=.+..++.+|||+++.+++.|   +++.+.|.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||
T Consensus        12 ~~~~~~~~~~~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E   91 (357)
T 1zsy_A           12 DLGTENLYFQSMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNE   91 (357)
T ss_dssp             CTTCSCCCCCCCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSC
T ss_pred             CcchhhhhhhhCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccce
Confidence            445555555556678999999999875   889999999999999999999999999999999987654 3579999999


Q ss_pred             eeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeecccccccee
Q 016660           78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS  157 (385)
Q Consensus        78 ~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~  157 (385)
                      ++|+|+++|+++++|++||||++.+.                                                +.|+|+
T Consensus        92 ~~G~V~~vG~~v~~~~vGdrV~~~~~------------------------------------------------~~G~~a  123 (357)
T 1zsy_A           92 GVAQVVAVGSNVTGLKPGDWVIPANA------------------------------------------------GLGTWR  123 (357)
T ss_dssp             CEEEEEEECTTCCSCCTTCEEEESSS------------------------------------------------CSCCSB
T ss_pred             EEEEEEEeCCCCCCCCCCCEEEEcCC------------------------------------------------CCccce
Confidence            99999999999999999999975421                                                024999


Q ss_pred             eeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          158 EYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       158 ~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      ||++++++.++++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +++++.+++
T Consensus       124 ey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~  202 (357)
T 1zsy_A          124 TEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDR  202 (357)
T ss_dssp             SEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCC
T ss_pred             eEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCc
Confidence            99999999999999999999999999999999998878889999999999997 9999999999999999 555554432


Q ss_pred             ----hHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC--CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCccc
Q 016660          237 ----EKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS  310 (385)
Q Consensus       237 ----~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g--~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~  310 (385)
                          ++.++++++|+++++++++.. ...+.+.+.+  ++|+|||++|++. ...++++++++ |+++.+|... .....
T Consensus       203 ~~~~~~~~~~~~lGa~~vi~~~~~~-~~~~~~~~~~~~~~Dvvid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~-~~~~~  278 (357)
T 1zsy_A          203 PDIQKLSDRLKSLGAEHVITEEELR-RPEMKNFFKDMPQPRLALNCVGGKS-STELLRQLARG-GTMVTYGGMA-KQPVV  278 (357)
T ss_dssp             SCHHHHHHHHHHTTCSEEEEHHHHH-SGGGGGTTSSSCCCSEEEESSCHHH-HHHHHTTSCTT-CEEEECCCCT-TCCBC
T ss_pred             cchHHHHHHHHhcCCcEEEecCcch-HHHHHHHHhCCCCceEEEECCCcHH-HHHHHHhhCCC-CEEEEEecCC-CCCCC
Confidence                256889999999999875411 1234555554  5999999999877 56799999997 9999998643 33456


Q ss_pred             ccHHHHhhcCcEEEEeeecCCC-------CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEE
Q 016660          311 LSSFEVLHSGKILMGSLFGGLK-------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  382 (385)
Q Consensus       311 ~~~~~~~~~~~~i~g~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~  382 (385)
                      ++...++.+++++.|++...+.       .++.++++++++++|++++.  +.++|+|+++++||+.+.+++. +|+||+
T Consensus       279 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gKvvl~  356 (357)
T 1zsy_A          279 ASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAP--ACSQVPLQDYQSALEASMKPFISSKQILT  356 (357)
T ss_dssp             CCHHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCC--CEEEEEGGGHHHHHHHHTSSSCSSEEEEE
T ss_pred             CCHHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCc--cceEEcHHHHHHHHHHHHhCCCCCcEEEe
Confidence            7777788899999998654221       12357889999999987765  5589999999999999987765 599987


Q ss_pred             e
Q 016660          383 M  383 (385)
Q Consensus       383 ~  383 (385)
                      +
T Consensus       357 ~  357 (357)
T 1zsy_A          357 M  357 (357)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=1.4e-50  Score=379.34  Aligned_cols=308  Identities=18%  Similarity=0.173  Sum_probs=260.6

Q ss_pred             CeeeeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCC-----CCCCCCccccCceeEEEEEeC
Q 016660           14 PIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-----FPAVFPRILGHEAIGVVESVG   86 (385)
Q Consensus        14 ~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-----~~~~~p~~~G~e~~G~V~~vG   86 (385)
                      +++|||+++.+++.+  +++.+.|.|+|++|||+|||.+++||++|+++++|..     ....+|.++|||++|+|+++|
T Consensus         4 m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG   83 (321)
T 3tqh_A            4 MKEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELG   83 (321)
T ss_dssp             -CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEEC
T ss_pred             cccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeC
Confidence            367999999999876  8999999999999999999999999999999998831     234679999999999999999


Q ss_pred             CCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCc
Q 016660           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (385)
Q Consensus        87 ~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~  166 (385)
                      +++++|++||||+..+..+                          ..+                   |+|+||++++++.
T Consensus        84 ~~v~~~~~GdrV~~~~~~~--------------------------~~~-------------------G~~aey~~v~~~~  118 (321)
T 3tqh_A           84 SDVNNVNIGDKVMGIAGFP--------------------------DHP-------------------CCYAEYVCASPDT  118 (321)
T ss_dssp             TTCCSCCTTCEEEEECSTT--------------------------TCC-------------------CCSBSEEEECGGG
T ss_pred             CCCCCCCCCCEEEEccCCC--------------------------CCC-------------------CcceEEEEecHHH
Confidence            9999999999998653211                          112                   3999999999999


Q ss_pred             eEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc
Q 016660          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (385)
Q Consensus       167 ~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l  245 (385)
                      ++++|+++++++||++++++.|||+++ +.+++++|++|||+| +|++|++++|+|+.+|+ +|+++. ++++.++++++
T Consensus       119 ~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~l  195 (321)
T 3tqh_A          119 IIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKAL  195 (321)
T ss_dssp             EEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHH
T ss_pred             hccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHHc
Confidence            999999999999999999999999988 889999999999997 59999999999999999 888886 56779999999


Q ss_pred             CCCeEEeCCCCC-chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEE
Q 016660          246 GVTEFVNSKNCG-DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  324 (385)
Q Consensus       246 g~~~vv~~~~~~-~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  324 (385)
                      |+++++|+++.+ ..+.+     .++|+|||++|++. .+.++++++++ |+++.+|....    ......+..+++++.
T Consensus       196 Ga~~~i~~~~~~~~~~~~-----~g~D~v~d~~g~~~-~~~~~~~l~~~-G~iv~~g~~~~----~~~~~~~~~~~~~~~  264 (321)
T 3tqh_A          196 GAEQCINYHEEDFLLAIS-----TPVDAVIDLVGGDV-GIQSIDCLKET-GCIVSVPTITA----GRVIEVAKQKHRRAF  264 (321)
T ss_dssp             TCSEEEETTTSCHHHHCC-----SCEEEEEESSCHHH-HHHHGGGEEEE-EEEEECCSTTH----HHHHHHHHHTTCEEE
T ss_pred             CCCEEEeCCCcchhhhhc-----cCCCEEEECCCcHH-HHHHHHhccCC-CEEEEeCCCCc----hhhhhhhhhcceEEE
Confidence            999999998844 22211     47999999999988 59999999997 99999986421    112234566889998


Q ss_pred             EeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          325 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       325 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                      +....  ...++++++++++++|++++  .++++|+|+++++||+.+++++. +|+||+++
T Consensus       265 ~~~~~--~~~~~~~~~~~l~~~g~l~~--~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~  321 (321)
T 3tqh_A          265 GLLKQ--FNIEELHYLGKLVSEDKLRI--EISRIFQLSEAVTAHELLETGHVRGKLVFKVR  321 (321)
T ss_dssp             CCCCC--CCHHHHHHHHHHHHTTSSCC--CEEEEECGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             EEecC--CCHHHHHHHHHHHHCCCccc--ccccEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence            86422  23467999999999997765  58899999999999999998876 59999874

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1.2e-50  Score=386.29  Aligned_cols=318  Identities=17%  Similarity=0.159  Sum_probs=265.7

Q ss_pred             CeeeeEEEeccCCCC---cEEEEeecCCCC--CCeEEEEEeeeecccccccccccCCCC-CCCC---------ccccCce
Q 016660           14 PIQCRAAIATAPGEP---LVIDEVIVDPPN--SHEVRVRIICTSLCHSDVTFWKMKDFP-AVFP---------RILGHEA   78 (385)
Q Consensus        14 ~~~~~a~~~~~~~~~---l~~~~~~~p~~~--~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p---------~~~G~e~   78 (385)
                      +++|||+++.+++.|   +++.++|.|.|.  +|||+|||.+++||++|+++++|.++. ..+|         .++|||+
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~   80 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence            478999999999975   899999999887  999999999999999999999887643 3456         8999999


Q ss_pred             eEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceee
Q 016660           79 IGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSE  158 (385)
Q Consensus        79 ~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~  158 (385)
                      +|+|+++|+++++|++||||++.+.                             .                   .|+|+|
T Consensus        81 ~G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~-------------------~G~~ae  112 (364)
T 1gu7_A           81 LFEVIKVGSNVSSLEAGDWVIPSHV-----------------------------N-------------------FGTWRT  112 (364)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS-----------------------------C-------------------CCCSBS
T ss_pred             EEEEEEeCCCCCcCCCCCEEEecCC-----------------------------C-------------------CCcchh
Confidence            9999999999999999999975421                             1                   239999


Q ss_pred             eEeeccCceEECCC-----------CCCcccccccccchhhhhhhhhhhccCCCC-CEEEEEcC-CHHHHHHHHHHHHcC
Q 016660          159 YTVLDIAHVVKVDP-----------TVPPNRACLLSCGVSTGVGAAWRTANVEVG-STVVIFGL-GSIGLAVAEGARLCG  225 (385)
Q Consensus       159 ~v~v~~~~~~~iP~-----------~l~~~~aa~l~~~~~ta~~al~~~~~~~~~-~~VlI~G~-g~vG~~ai~la~~~G  225 (385)
                      |++++++.++++|+           ++++++||++++++.|||+++.+.+++++| ++|||+|+ |++|++++|+||.+|
T Consensus       113 y~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G  192 (364)
T 1gu7_A          113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN  192 (364)
T ss_dssp             EEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT
T ss_pred             eEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCC
Confidence            99999999999998           899999999999999999988776789999 99999997 999999999999999


Q ss_pred             CCEEEEEcCCchH----HHHHHHcCCCeEEeCCC---CCchhHHHHhh--CC-CccEEEEccCChHHHHHHHHHhccCCc
Q 016660          226 ATRIIGVDVISEK----FEIGKRFGVTEFVNSKN---CGDKSIIIDMT--DG-GADYCFECVGLASLVQEAYACCRKGWG  295 (385)
Q Consensus       226 ~~~vi~~~~~~~~----~~~~~~lg~~~vv~~~~---~~~~~~i~~~~--~g-~~d~vid~~g~~~~~~~~~~~l~~~~G  295 (385)
                      + +|+++.+++++    .++++++|+++++++++   .+..+.+++.+  ++ ++|+|||++|+.... .++++++++ |
T Consensus       193 a-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~~~-~~~~~l~~~-G  269 (364)
T 1gu7_A          193 F-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSST-GIARKLNNN-G  269 (364)
T ss_dssp             C-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHH-HHHHTSCTT-C
T ss_pred             C-EEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchhHH-HHHHHhccC-C
Confidence            9 77777655554    67789999999999874   34555577777  45 899999999998844 889999997 9


Q ss_pred             eEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC------CCcHHHHHHHHHcCCCCCCCceeeee-ecchHHHHH
Q 016660          296 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA------KSDIPILLKRYMDKELELDKFVTHEM-KFEEINSAF  368 (385)
Q Consensus       296 ~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~i~~~~-~l~~~~~a~  368 (385)
                      +++.+|... .....++...++.+++++.|++...+..      .++++++++++++|++++.+..+..+ +++++++||
T Consensus       270 ~~v~~g~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l~~~~~A~  348 (364)
T 1gu7_A          270 LMLTYGGMS-FQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELY  348 (364)
T ss_dssp             EEEECCCCS-SCCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECCSSSCHHHHH
T ss_pred             EEEEecCCC-CCCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHHcCCcccccceEEecCchhhHHHHH
Confidence            999999754 3345677777888999999986543210      24688899999999988876554444 456999999


Q ss_pred             HHHhcCCe-eEEEEEe
Q 016660          369 DLLIKGKC-LRCVIWM  383 (385)
Q Consensus       369 ~~l~~~~~-~k~vi~~  383 (385)
                      +.+.+++. +|+||++
T Consensus       349 ~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          349 QDGVANSKDGKQLITY  364 (364)
T ss_dssp             HHHHHTGGGSCEEEEC
T ss_pred             HHHHhCCCCceEEEeC
Confidence            99987754 6999875

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3e-49  Score=374.35  Aligned_cols=313  Identities=19%  Similarity=0.281  Sum_probs=265.6

Q ss_pred             CeeeeEEEeccCCCC--cEE-EEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCC
Q 016660           14 PIQCRAAIATAPGEP--LVI-DEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENV   89 (385)
Q Consensus        14 ~~~~~a~~~~~~~~~--l~~-~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v   89 (385)
                      +.+|||+++.+++.+  +++ .++|.|+|+++||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+++|+++
T Consensus        27 ~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v  106 (351)
T 1yb5_A           27 QKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNA  106 (351)
T ss_dssp             -CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTC
T ss_pred             cceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCC
Confidence            456999999988754  788 799999999999999999999999999999887643 4679999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEE
Q 016660           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (385)
Q Consensus        90 ~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~  169 (385)
                      ++|++||||+..+.                             .+                   |+|+||++++++.+++
T Consensus       107 ~~~~vGdrV~~~~~-----------------------------~~-------------------G~~aey~~v~~~~~~~  138 (351)
T 1yb5_A          107 SAFKKGDRVFTSST-----------------------------IS-------------------GGYAEYALAADHTVYK  138 (351)
T ss_dssp             TTCCTTCEEEESCC-----------------------------SS-------------------CSSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEEeCC-----------------------------CC-------------------CcceeEEEECHHHeEE
Confidence            99999999975321                             11                   3999999999999999


Q ss_pred             CCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC
Q 016660          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (385)
Q Consensus       170 iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~  248 (385)
                      +|+++++++||++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++|++
T Consensus       139 ~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~  217 (351)
T 1yb5_A          139 LPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAH  217 (351)
T ss_dssp             CCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCS
T ss_pred             CCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCC
Confidence            99999999999999999999999877889999999999997 9999999999999999 899999999999999999999


Q ss_pred             eEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEee
Q 016660          249 EFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  327 (385)
Q Consensus       249 ~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  327 (385)
                      .++|+.+.+..+.+.+.+++ ++|++||++|... ++.++++++++ |+++.+|...   ...++...++.+++++.|+.
T Consensus       218 ~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~~~-~~~~~~~l~~~-G~iv~~g~~~---~~~~~~~~~~~~~~~i~g~~  292 (351)
T 1yb5_A          218 EVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSLLSHG-GRVIVVGSRG---TIEINPRDTMAKESSIIGVT  292 (351)
T ss_dssp             EEEETTSTTHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHEEEE-EEEEECCCCS---CEEECTHHHHTTTCEEEECC
T ss_pred             EEEeCCCchHHHHHHHHcCCCCcEEEEECCChHH-HHHHHHhccCC-CEEEEEecCC---CCccCHHHHHhCCcEEEEEE
Confidence            99998876655667777777 8999999999865 88999999997 9999999632   34566667788999999986


Q ss_pred             ecCCCCCCcHH----HHHHHHHcCCCCCCCceeeeeecchHHHHHHH-HhcCC-eeEEEEEe
Q 016660          328 FGGLKAKSDIP----ILLKRYMDKELELDKFVTHEMKFEEINSAFDL-LIKGK-CLRCVIWM  383 (385)
Q Consensus       328 ~~~~~~~~~~~----~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~-l~~~~-~~k~vi~~  383 (385)
                      +.... .+++.    .+.+++++|++  ++++++.|+|+++++|++. ++++. .+|+||++
T Consensus       293 ~~~~~-~~~~~~~~~~l~~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~~gKvvi~~  351 (351)
T 1yb5_A          293 LFSST-KEEFQQYAAALQAGMEIGWL--KPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  351 (351)
T ss_dssp             GGGCC-HHHHHHHHHHHHHHHHHTCC--CCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             eecCC-HHHHHHHHHHHHHHHHCCCc--cCccceEEcHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            43321 23343    45556778854  4568899999999999998 55544 46999874

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=9.5e-50  Score=375.61  Aligned_cols=315  Identities=21%  Similarity=0.252  Sum_probs=266.9

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCC-CC--CCCCccccCceeEEEEEeCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FP--AVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~~--~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      |||+++.+++.+  +++.+.|.|+|++|||+|||.+++||++|+++++|.+ +.  ..+|.++|||++|+|+++|+++++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            899999998754  8899999999999999999999999999999998865 22  457999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      |++||||+..+.                             .+                   |+|+||++++++.++++|
T Consensus        82 ~~~GdrV~~~~~-----------------------------~~-------------------G~~aey~~v~~~~~~~iP  113 (333)
T 1wly_A           82 FTVGERVCTCLP-----------------------------PL-------------------GAYSQERLYPAEKLIKVP  113 (333)
T ss_dssp             CCTTCEEEECSS-----------------------------SC-------------------CCSBSEEEEEGGGCEECC
T ss_pred             CCCCCEEEEecC-----------------------------CC-------------------CcceeEEEecHHHcEeCC
Confidence            999999964310                             01                   399999999999999999


Q ss_pred             CCCCccc--ccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC
Q 016660          172 PTVPPNR--ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (385)
Q Consensus       172 ~~l~~~~--aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~  248 (385)
                      +++++++  ||++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.++++|++
T Consensus       114 ~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~  192 (333)
T 1wly_A          114 KDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCH  192 (333)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCS
T ss_pred             CCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            9999999  99999999999999877889999999999996 9999999999999999 899999999999999999999


Q ss_pred             eEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHH-HHhhcC--cEEE
Q 016660          249 EFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF-EVLHSG--KILM  324 (385)
Q Consensus       249 ~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~--~~i~  324 (385)
                      .++|+.+.+..+.+.+.+.+ ++|++||++|+ ..++.++++++++ |+++.+|.... ....++.. .++.|+  +++.
T Consensus       193 ~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~~~~i~  269 (333)
T 1wly_A          193 HTINYSTQDFAEVVREITGGKGVDVVYDSIGK-DTLQKSLDCLRPR-GMCAAYGHASG-VADPIRVVEDLGVRGSLFITR  269 (333)
T ss_dssp             EEEETTTSCHHHHHHHHHTTCCEEEEEECSCT-TTHHHHHHTEEEE-EEEEECCCTTC-CCCCCCHHHHTTTTTSCEEEC
T ss_pred             EEEECCCHHHHHHHHHHhCCCCCeEEEECCcH-HHHHHHHHhhccC-CEEEEEecCCC-CcCCCChhHhhhhcCCcEEEE
Confidence            99998876666667777766 89999999999 4489999999997 99999997542 23456666 677888  9998


Q ss_pred             EeeecCCCC----CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          325 GSLFGGLKA----KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       325 g~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                      |++...+..    .++++++++++++|++.  ++++++|+|+++++||+.+++++. +|+||++++
T Consensus       270 g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  333 (333)
T 1wly_A          270 PALWHYMSNRSEIDEGSKCLFDAVKAGVLH--SSVAKTFPLREAAAAHKYMGGRQTIGSIVLLPQA  333 (333)
T ss_dssp             CCGGGGSCSHHHHHHHHHHHHHHHHTTSCC--CCEEEEEEGGGHHHHHHHHHHCSCCSEEEEETTC
T ss_pred             EeehhhccCHHHHHHHHHHHHHHHHCCCcC--CCcceEEeHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence            875422111    13578899999999765  568899999999999999988764 699999875

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=2.1e-50  Score=378.72  Aligned_cols=313  Identities=15%  Similarity=0.105  Sum_probs=264.6

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||++++++++|  +++.++|.|+|++|||+|||.+++||++|+++++|.++. ..+|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            799999999976  889999999999999999999999999999999987754 5789999999999999998  57899


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||||++.+   |                     ..|...+|                   +|+||++++++.++++|++
T Consensus        79 vGdrV~~~~---~---------------------~~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  115 (324)
T 3nx4_A           79 AGQEVLLTG---W---------------------GVGENHWG-------------------GLAERARVKGDWLVALPAG  115 (324)
T ss_dssp             TTCEEEEEC---T---------------------TBTTTBCC-------------------SSBSEEEECGGGCEECCTT
T ss_pred             CCCEEEEcc---c---------------------ccCCCCCC-------------------ceeeEEecCHHHcEECCCC
Confidence            999998653   1                     02333334                   9999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhh--hhccCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe
Q 016660          174 VPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~--~~~~~~~~~-~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~  249 (385)
                      +++++||++++.+.|||+++.  .+.++++++ +|||+|+ |++|++++|+||.+|+ +|++++++++|.++++++|+++
T Consensus       116 ~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  194 (324)
T 3nx4_A          116 LSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANR  194 (324)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCE
Confidence            999999999999999998875  345566632 4999998 9999999999999999 8999999999999999999999


Q ss_pred             EEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeec
Q 016660          250 FVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  329 (385)
Q Consensus       250 vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  329 (385)
                      ++|+++...   +++++++++|++||++|++ .++.++++++++ |+++.+|... ....+++...++.|++++.|++..
T Consensus       195 vi~~~~~~~---~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~~~~g~~~~  268 (324)
T 3nx4_A          195 ILSRDEFAE---SRPLEKQLWAGAIDTVGDK-VLAKVLAQMNYG-GCVAACGLAG-GFALPTTVMPFILRNVRLQGVDSV  268 (324)
T ss_dssp             EEEGGGSSC---CCSSCCCCEEEEEESSCHH-HHHHHHHTEEEE-EEEEECCCTT-CSEEEEESHHHHHHCCEEEECCST
T ss_pred             EEecCCHHH---HHhhcCCCccEEEECCCcH-HHHHHHHHHhcC-CEEEEEecCC-CCCCCCCHHHHhhcCeEEEEEecc
Confidence            999887443   4555556899999999987 599999999997 9999999764 334566777788899999998644


Q ss_pred             CCCC---CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          330 GLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       330 ~~~~---~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                      ....   .+.++++++++++|++++  + ++.|+|+++++||+.+++++. +|+||+++
T Consensus       269 ~~~~~~~~~~~~~~~~l~~~g~l~~--~-~~~~~l~~~~~A~~~~~~~~~~gkvvv~~~  324 (324)
T 3nx4_A          269 MTPPARRAEAWARLVKDLPESFYAQ--A-ATEITLADAPKFADAIINNQVQGRTLVKIK  324 (324)
T ss_dssp             TCCHHHHHHHHHHHHHHSCHHHHHH--H-EEEEEGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             ccChHHHHHHHHHHHHHHHcCCCCC--C-ceeEeHHHHHHHHHHHHhCCCCceEEEecC
Confidence            3321   135778888888886653  4 899999999999999998876 59999874

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=7.9e-49  Score=373.16  Aligned_cols=316  Identities=19%  Similarity=0.199  Sum_probs=266.0

Q ss_pred             CeeeeEEEeccCCC----CcEE-EEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCC
Q 016660           14 PIQCRAAIATAPGE----PLVI-DEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGE   87 (385)
Q Consensus        14 ~~~~~a~~~~~~~~----~l~~-~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~   87 (385)
                      +.+|||+++.+++.    .+++ .++|.|+|++|||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+++|+
T Consensus        21 ~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG~  100 (362)
T 2c0c_A           21 QSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGL  100 (362)
T ss_dssp             CCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEECT
T ss_pred             hhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEECC
Confidence            46799999999874    3788 999999999999999999999999999999887643 46799999999999999999


Q ss_pred             CCC-CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCc
Q 016660           88 NVD-GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (385)
Q Consensus        88 ~v~-~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~  166 (385)
                      +|+ +|++||||+...                                                  .|+|+||++++++.
T Consensus       101 ~V~~~~~vGdrV~~~~--------------------------------------------------~G~~aey~~v~~~~  130 (362)
T 2c0c_A          101 SASARYTVGQAVAYMA--------------------------------------------------PGSFAEYTVVPASI  130 (362)
T ss_dssp             TGGGTCCTTCEEEEEC--------------------------------------------------SCCSBSEEEEEGGG
T ss_pred             CccCCCCCCCEEEEcc--------------------------------------------------CCcceeEEEEcHHH
Confidence            999 999999997431                                                  13999999999999


Q ss_pred             eEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc
Q 016660          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (385)
Q Consensus       167 ~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l  245 (385)
                      ++++|+..  .++|+++++++|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++
T Consensus       131 ~~~~P~~~--~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~  207 (362)
T 2c0c_A          131 ATPVPSVK--PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSL  207 (362)
T ss_dssp             CEECSSSC--HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT
T ss_pred             eEECCCCc--hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHc
Confidence            99999963  4677888899999999888889999999999995 9999999999999999 899999999999999999


Q ss_pred             CCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCC------cc---cccHHHH
Q 016660          246 GVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS------QL---SLSSFEV  316 (385)
Q Consensus       246 g~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~------~~---~~~~~~~  316 (385)
                      |+++++++++.+..+.+++.+++++|+|||++|.. .++.++++++++ |+++.+|......      .+   .+ ...+
T Consensus       208 Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~-~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~-~~~~  284 (362)
T 2c0c_A          208 GCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGGA-MFDLAVDALATK-GRLIVIGFISGYQTPTGLSPVKAGTL-PAKL  284 (362)
T ss_dssp             TCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCTH-HHHHHHHHEEEE-EEEEECCCGGGTTSSSCCCCCCCTTH-HHHH
T ss_pred             CCcEEEecCChhHHHHHHHhcCCCCCEEEECCCHH-HHHHHHHHHhcC-CEEEEEeCCCCcCccccccccccccc-HHHH
Confidence            99999998876555556666645899999999985 489999999997 9999998753211      00   22 2467


Q ss_pred             hhcCcEEEEeeecCCC--CCCcHHHHHHHHHcCCCCCCCc------eeeeeecchHHHHHHHHhcCCe-eEEEEEeCC
Q 016660          317 LHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKF------VTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       317 ~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~------i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                      +.+++++.|++...+.  ..++++++++++++|++++...      +++.++|+++++||+.+++++. +|+||++++
T Consensus       285 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  362 (362)
T 2c0c_A          285 LKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELPH  362 (362)
T ss_dssp             HHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEECCC
T ss_pred             HhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHHcCCCCceEEEEcCC
Confidence            7789999998654432  1346889999999998876533      3467899999999999988764 699999875

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.5e-49  Score=370.09  Aligned_cols=313  Identities=16%  Similarity=0.176  Sum_probs=266.9

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      |||+++.+++.+  +++.+.|.|+|+++||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++|++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~   81 (327)
T 1qor_A            2 ATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKA   81 (327)
T ss_dssp             CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999998754  889999999999999999999999999999999987755568999999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      ||||. ..                           | ..+                   |+|+||++++++.++++|+++
T Consensus        82 GdrV~-~~---------------------------g-~~~-------------------G~~aey~~v~~~~~~~iP~~l  113 (327)
T 1qor_A           82 GDRVV-YA---------------------------Q-SAL-------------------GAYSSVHNIIADKAAILPAAI  113 (327)
T ss_dssp             TCEEE-ES---------------------------C-CSS-------------------CCSBSEEEEEGGGEEECCTTS
T ss_pred             CCEEE-EC---------------------------C-CCC-------------------ceeeeEEEecHHHcEECCCCC
Confidence            99994 21                           0 001                   399999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      ++++||++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.++++|++.++|+
T Consensus       114 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~  192 (327)
T 1qor_A          114 SFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINY  192 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEEC
Confidence            999999999999999999877889999999999995 9999999999999999 89999999999999999999999998


Q ss_pred             CCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhc-CcEEEEeeecCC
Q 016660          254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS-GKILMGSLFGGL  331 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~i~g~~~~~~  331 (385)
                      .+.+..+.+.+.+.+ ++|++||++| ...++.++++++++ |+++.+|.... ....++...++.+ ++.+.+.....+
T Consensus       193 ~~~~~~~~~~~~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (327)
T 1qor_A          193 REEDLVERLKEITGGKKVRVVYDSVG-RDTWERSLDCLQRR-GLMVSFGNSSG-AVTGVNLGILNQKGSLYVTRPSLQGY  269 (327)
T ss_dssp             TTSCHHHHHHHHTTTCCEEEEEECSC-GGGHHHHHHTEEEE-EEEEECCCTTC-CCCCBCTHHHHHTTSCEEECCCHHHH
T ss_pred             CCccHHHHHHHHhCCCCceEEEECCc-hHHHHHHHHHhcCC-CEEEEEecCCC-CCCccCHHHHhhccceEEEccchhhh
Confidence            876665667777766 8999999999 55599999999997 99999997542 2235666667777 788876543221


Q ss_pred             C-----CCCcHHHHHHHHHcCCCCCCCcee--eeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          332 K-----AKSDIPILLKRYMDKELELDKFVT--HEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       332 ~-----~~~~~~~~~~~~~~g~~~~~~~i~--~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      .     ..+.++++++++++|++++  +++  ++|+|+++++||+.+++++. +|+||++
T Consensus       270 ~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          270 ITTREELTEASNELFSLIASGVIKV--DVAEQQKYPLKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_dssp             CCSHHHHHHHHHHHHHHHHTTSSCC--CCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCccc--ccccCcEEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            1     1235788999999997754  577  89999999999999988764 6999864

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1.3e-47  Score=361.44  Aligned_cols=310  Identities=18%  Similarity=0.164  Sum_probs=261.9

Q ss_pred             CeeeeEEEecc--C----CCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCc----eeEEEE
Q 016660           14 PIQCRAAIATA--P----GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE----AIGVVE   83 (385)
Q Consensus        14 ~~~~~a~~~~~--~----~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e----~~G~V~   83 (385)
                      +++|||+++..  +    .+.+++.++|.|+|++|||+|||.+++||++|++.+.+... ..+|.++|||    ++|+|+
T Consensus         5 ~~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~-~~~p~~~G~e~g~~~~G~V~   83 (336)
T 4b7c_A            5 SQINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARS-YIPPVGIGEVMRALGVGKVL   83 (336)
T ss_dssp             -CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCC-SSCCCCTTSBCCCEEEEEEE
T ss_pred             cccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccc-cCCCCCCCcccCCceEEEEE
Confidence            36799999985  1    12399999999999999999999999999999988776432 2457788888    799999


Q ss_pred             EeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeec
Q 016660           84 SVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD  163 (385)
Q Consensus        84 ~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~  163 (385)
                      +.  ++++|++||||+..                                                    |+|+||++++
T Consensus        84 ~~--~v~~~~vGdrV~~~----------------------------------------------------G~~aey~~v~  109 (336)
T 4b7c_A           84 VS--KHPGFQAGDYVNGA----------------------------------------------------LGVQDYFIGE  109 (336)
T ss_dssp             EE--CSTTCCTTCEEEEE----------------------------------------------------CCSBSEEEEC
T ss_pred             ec--CCCCCCCCCEEecc----------------------------------------------------CCceEEEEec
Confidence            94  58899999999742                                                    3899999999


Q ss_pred             cCceEECCCCCCcccc--cccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH
Q 016660          164 IAHVVKVDPTVPPNRA--CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (385)
Q Consensus       164 ~~~~~~iP~~l~~~~a--a~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  240 (385)
                      ++.++++|+++++.++  |++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|+++++++++.+
T Consensus       110 ~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~  188 (336)
T 4b7c_A          110 PKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCR  188 (336)
T ss_dssp             CTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             hHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            9999999999988776  7899999999999888899999999999998 9999999999999999 9999999999999


Q ss_pred             HH-HHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCC-----CCcccccHH
Q 016660          241 IG-KRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP-----GSQLSLSSF  314 (385)
Q Consensus       241 ~~-~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-----~~~~~~~~~  314 (385)
                      .+ +++|+++++|+.+.+....+.+.+++++|++||++|+. .++.++++++++ |+++.+|....     ....+++..
T Consensus       189 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~  266 (336)
T 4b7c_A          189 FLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGGE-ILDTVLTRIAFK-ARIVLCGAISQYNNKEAVRGPANYL  266 (336)
T ss_dssp             HHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEE-EEEEECCCGGGGC------CCTTTT
T ss_pred             HHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCcc-hHHHHHHHHhhC-CEEEEEeecccccCCcccccchhHH
Confidence            99 89999999999887766667787755899999999975 499999999997 99999987541     112355666


Q ss_pred             HHhhcCcEEEEeeecCCC--CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          315 EVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       315 ~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      .++.+++++.|+....+.  ..+++.++++++++|++++.  +...++|+++++||+.+.+++. +|+||++
T Consensus       267 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          267 SLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSR--EDIVEGLETFPETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             HHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCC--EEEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccc--eeeecCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            788899999998755432  12568889999999988776  4446899999999999988876 5999975

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=3.7e-49  Score=371.19  Aligned_cols=318  Identities=16%  Similarity=0.184  Sum_probs=257.2

Q ss_pred             CeeeeEEEeccCCC--CcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCC
Q 016660           14 PIQCRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        14 ~~~~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      +++|||+++.+++.  .+++.++|.|+|+++||+|||.+++||++|+++++|.++. ..+|.++|||++|+|+++|  ++
T Consensus         2 ~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~~--v~   79 (330)
T 1tt7_A            2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSN--DP   79 (330)
T ss_dssp             CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEECS--ST
T ss_pred             CCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEcC--CC
Confidence            45799999999873  4899999999999999999999999999999999886543 4579999999999999964  68


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      +|++||||++.+..                        .|...+                   |+|+||++++++.++++
T Consensus        80 ~~~vGdrV~~~~~~------------------------~g~~~~-------------------G~~aey~~v~~~~~~~i  116 (330)
T 1tt7_A           80 RFAEGDEVIATSYE------------------------LGVSRD-------------------GGLSEYASVPGDWLVPL  116 (330)
T ss_dssp             TCCTTCEEEEESTT------------------------BTTTBC-------------------CSSBSSEEECGGGEEEC
T ss_pred             CCCCCCEEEEcccc------------------------cCCCCC-------------------ccceeEEEecHHHeEEC
Confidence            89999999865310                        222223                   39999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhh--hhccCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~--~~~~~~~~~-~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg  246 (385)
                      |+++++++||++++++.|||.++.  ...++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|
T Consensus       117 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lG  195 (330)
T 1tt7_A          117 PQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLG  195 (330)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHT
T ss_pred             CCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC
Confidence            999999999999999999998764  346788886 9999997 9999999999999999 7999999999999999999


Q ss_pred             CCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEe
Q 016660          247 VTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  326 (385)
Q Consensus       247 ~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  326 (385)
                      +++++|+++.+ ...+.+.+++++|++||++|++ .++.++++++++ |+++.+|... ....+++...++.|++++.|+
T Consensus       196 a~~v~~~~~~~-~~~~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~~i~g~  271 (330)
T 1tt7_A          196 ASEVISREDVY-DGTLKALSKQQWQGAVDPVGGK-QLASLLSKIQYG-GSVAVSGLTG-GGEVPATVYPFILRGVSLLGI  271 (330)
T ss_dssp             CSEEEEHHHHC-SSCCCSSCCCCEEEEEESCCTH-HHHHHHTTEEEE-EEEEECCCSS-CSCEEECSHHHHTSCCEEEEC
T ss_pred             CcEEEECCCch-HHHHHHhhcCCccEEEECCcHH-HHHHHHHhhcCC-CEEEEEecCC-CCccCcchHHHHhcCeEEEEE
Confidence            99999876422 1113334444899999999995 599999999997 9999999754 233556666778899999998


Q ss_pred             eecCCCC---CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          327 LFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       327 ~~~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      +......   .+.++++++++++|++  +++++++|+|+++++||+.+++++. +|+||++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  330 (330)
T 1tt7_A          272 DSVYCPMDVRAAVWERMSSDLKPDQL--LTIVDREVSLEETPGALKDILQNRIQGRVIVKL  330 (330)
T ss_dssp             CSSSCCHHHHHHHHHHTTTTSCCSCS--TTSEEEEECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred             eccccCHHHHHHHHHHHHHHHhcCCc--ccccceEEcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            5322211   1234455566667754  4668899999999999999987764 6999864

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=2.3e-47  Score=364.95  Aligned_cols=317  Identities=17%  Similarity=0.203  Sum_probs=254.9

Q ss_pred             CCCCeeeeEEEeccCCCC--cEE-EEeecCCC-CCCeEEEEEeeeecccccccccccCCC---------------CCCCC
Q 016660           11 AGKPIQCRAAIATAPGEP--LVI-DEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDF---------------PAVFP   71 (385)
Q Consensus        11 ~~~~~~~~a~~~~~~~~~--l~~-~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~---------------~~~~p   71 (385)
                      ...+++|||+++.+++.+  +++ .++|.|.| +++||+|||.|++||++|++++.|...               ...+|
T Consensus        16 ~~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P   95 (375)
T 2vn8_A           16 ENLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFP   95 (375)
T ss_dssp             --CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCS
T ss_pred             cccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCC
Confidence            345677999999998754  888 89999985 999999999999999999999887531               12379


Q ss_pred             ccccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccc
Q 016660           72 RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFV  151 (385)
Q Consensus        72 ~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~  151 (385)
                      .++|||++|+|+++|++|++|++||||+..+.                           ...+                 
T Consensus        96 ~v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~---------------------------~~~~-----------------  131 (375)
T 2vn8_A           96 LTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP---------------------------PWKQ-----------------  131 (375)
T ss_dssp             BCCCCEEEEEEEEECTTCCSCCTTCEEEEECC---------------------------TTSC-----------------
T ss_pred             cccceeeeEEEEEeCCCCCCCCCCCEEEEecC---------------------------CCCC-----------------
Confidence            99999999999999999999999999986521                           1112                 


Q ss_pred             cccceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhcc----CCCCCEEEEEcC-CHHHHHHHHHHHHcCC
Q 016660          152 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN----VEVGSTVVIFGL-GSIGLAVAEGARLCGA  226 (385)
Q Consensus       152 ~~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~----~~~~~~VlI~G~-g~vG~~ai~la~~~G~  226 (385)
                        |+|+||++++++.++++|+++++++||++++++.|||+++.+.++    +++|++|||+|+ |++|++++|+|+..|+
T Consensus       132 --G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga  209 (375)
T 2vn8_A          132 --GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA  209 (375)
T ss_dssp             --CSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             --ccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC
Confidence              399999999999999999999999999999999999999877788    999999999995 9999999999999999


Q ss_pred             CEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh-HHHHHHHHHhccCCceEEEeccCCC
Q 016660          227 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGVDQP  305 (385)
Q Consensus       227 ~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~g~~~~  305 (385)
                       +|++++ ++++.++++++|+++++|+++.+..+.+.+.  +++|+|||++|+. ..++.++++++++ |+++.+|....
T Consensus       210 -~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~--~g~D~vid~~g~~~~~~~~~~~~l~~~-G~iv~~g~~~~  284 (375)
T 2vn8_A          210 -HVTAVC-SQDASELVRKLGADDVIDYKSGSVEEQLKSL--KPFDFILDNVGGSTETWAPDFLKKWSG-ATYVTLVTPFL  284 (375)
T ss_dssp             -EEEEEE-CGGGHHHHHHTTCSEEEETTSSCHHHHHHTS--CCBSEEEESSCTTHHHHGGGGBCSSSC-CEEEESCCSHH
T ss_pred             -EEEEEe-ChHHHHHHHHcCCCEEEECCchHHHHHHhhc--CCCCEEEECCCChhhhhHHHHHhhcCC-cEEEEeCCCcc
Confidence             898887 6789999999999999998875544434332  3899999999998 5568899999997 99999986421


Q ss_pred             CCccc---ccH------HHHhh-------cCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHH
Q 016660          306 GSQLS---LSS------FEVLH-------SGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD  369 (385)
Q Consensus       306 ~~~~~---~~~------~~~~~-------~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~  369 (385)
                       ....   +..      ..++.       ++..+.+...  ....++++++++++++|++.  ++++++|+|+++++||+
T Consensus       285 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~  359 (375)
T 2vn8_A          285 -LNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFF--MASGPCLDDIAELVDAGKIR--PVIEQTFPFSKVPEAFL  359 (375)
T ss_dssp             -HHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCC--CCCHHHHHHHHHHHHTTSCC--CCEEEEEEGGGHHHHHH
T ss_pred             -cccccccccchhheeehhhccccccccccCcceEEEEe--CCCHHHHHHHHHHHHCCCcc--cCcCeEECHHHHHHHHH
Confidence             1110   110      11222       3444443321  11234678999999999764  56889999999999999


Q ss_pred             HHhcCCe-eEEEEEe
Q 016660          370 LLIKGKC-LRCVIWM  383 (385)
Q Consensus       370 ~l~~~~~-~k~vi~~  383 (385)
                      .+++++. +|+||++
T Consensus       360 ~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          360 KVERGHARGKTVINV  374 (375)
T ss_dssp             HHHHCCCSSEEEEEC
T ss_pred             HHHcCCCCCeEEEEe
Confidence            9988764 6999976

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.3e-48  Score=364.37  Aligned_cols=316  Identities=17%  Similarity=0.159  Sum_probs=251.7

Q ss_pred             eeeeEEEeccCCC--CcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCC
Q 016660           15 IQCRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        15 ~~~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      .+|||+++.+++.  .+++.+.|.|+|+++||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+++  ++++
T Consensus         2 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~   79 (328)
T 1xa0_A            2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPR   79 (328)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSS
T ss_pred             CcceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCC
Confidence            3699999999874  3889999999999999999999999999999999886543 457999999999999996  4688


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      |++||||++.+.                        ..|...+                   |+|+||++++++.++++|
T Consensus        80 ~~vGdrV~~~~~------------------------~~g~~~~-------------------G~~aey~~v~~~~~~~~P  116 (328)
T 1xa0_A           80 FREGDEVIATGY------------------------EIGVTHF-------------------GGYSEYARLHGEWLVPLP  116 (328)
T ss_dssp             CCTTCEEEEEST------------------------TBTTTBC-------------------CSSBSEEEECGGGCEECC
T ss_pred             CCCCCEEEEccc------------------------cCCCCCC-------------------ccceeEEEechHHeEECC
Confidence            999999986521                        0222223                   399999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhh--hhccCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~--~~~~~~~~~-~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~  247 (385)
                      +++++++||++++++.|||.++.  .+.++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|+
T Consensus       117 ~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa  195 (328)
T 1xa0_A          117 KGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGA  195 (328)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTC
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC
Confidence            99999999999999999998764  346788886 9999997 9999999999999999 79999999999999999999


Q ss_pred             CeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEee
Q 016660          248 TEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  327 (385)
Q Consensus       248 ~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  327 (385)
                      ++++|+++.+ ...+.+.+++++|+|||++|+. .++.++++++++ |+++.+|... ....+++...++.|++++.|+.
T Consensus       196 ~~~i~~~~~~-~~~~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~-G~~v~~G~~~-~~~~~~~~~~~~~~~~~i~g~~  271 (328)
T 1xa0_A          196 KEVLAREDVM-AERIRPLDKQRWAAAVDPVGGR-TLATVLSRMRYG-GAVAVSGLTG-GAEVPTTVHPFILRGVSLLGID  271 (328)
T ss_dssp             SEEEECC----------CCSCCEEEEEECSTTT-THHHHHHTEEEE-EEEEECSCCS-SSCCCCCSHHHHHTTCEEEECC
T ss_pred             cEEEecCCcH-HHHHHHhcCCcccEEEECCcHH-HHHHHHHhhccC-CEEEEEeecC-CCCCCCchhhhhhcCceEEEEe
Confidence            9999987632 2224455445899999999996 499999999997 9999999753 2234556566778999999974


Q ss_pred             ecCCCC---CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          328 FGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       328 ~~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                      ......   .+.++.++++++++ +.  + +++.|+|+++++||+.+++++. +|+||+++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~g-l~--~-~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  328 (328)
T 1xa0_A          272 SVYCPMDLRLRIWERLAGDLKPD-LE--R-IAQEISLAELPQALKRILRGELRGRTVVRLA  328 (328)
T ss_dssp             SSSCCHHHHHHHHHHHHTTTCCC-HH--H-HEEEEEGGGHHHHHHHHHHTCCCSEEEEECC
T ss_pred             cccCCHHHHHHHHHHHHHHHHcC-Cc--e-eeeEeCHHHHHHHHHHHHcCCCCCeEEEEeC
Confidence            322111   12344555555555 43  3 3689999999999999987764 69999864

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=2.2e-46  Score=355.92  Aligned_cols=316  Identities=17%  Similarity=0.233  Sum_probs=261.2

Q ss_pred             CCCeeeeEEEe-ccC---CC----CcEEEEeecCCC-CCCeEEEEEeeeeccccccccccc----CCC-CCCCCccccCc
Q 016660           12 GKPIQCRAAIA-TAP---GE----PLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKM----KDF-PAVFPRILGHE   77 (385)
Q Consensus        12 ~~~~~~~a~~~-~~~---~~----~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g----~~~-~~~~p~~~G~e   77 (385)
                      .++++|||+++ ..+   +.    .+++.++|.|+| +++||+|||.+++||++|++.+.+    .+. ...+|.++|||
T Consensus         4 ~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E   83 (357)
T 2zb4_A            4 AAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGG   83 (357)
T ss_dssp             --CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEE
T ss_pred             cccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCcccccc
Confidence            35688999999 565   43    399999999999 999999999999999999987765    232 24578899999


Q ss_pred             eeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeecccccccee
Q 016660           78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS  157 (385)
Q Consensus        78 ~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~  157 (385)
                      ++|+|++  +++++|++||||++.                                                   .|+|+
T Consensus        84 ~~G~V~~--~~v~~~~vGdrV~~~---------------------------------------------------~G~~a  110 (357)
T 2zb4_A           84 GIGIIEE--SKHTNLTKGDFVTSF---------------------------------------------------YWPWQ  110 (357)
T ss_dssp             EEEEEEE--ECSTTCCTTCEEEEE---------------------------------------------------EEESB
T ss_pred             EEEEEEe--cCCCCCCCCCEEEec---------------------------------------------------CCCcE
Confidence            9999999  889999999999743                                                   13899


Q ss_pred             eeEeeccCceEECCCCC-----CcccccccccchhhhhhhhhhhccCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCEE
Q 016660          158 EYTVLDIAHVVKVDPTV-----PPNRACLLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRI  229 (385)
Q Consensus       158 ~~v~v~~~~~~~iP~~l-----~~~~aa~l~~~~~ta~~al~~~~~~~~~--~~VlI~G~-g~vG~~ai~la~~~G~~~v  229 (385)
                      ||++++++.++++|+++     +++ +|+++++++|||+++.+.++++++  ++|||+|+ |++|++++|+|+..|+++|
T Consensus       111 ey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~V  189 (357)
T 2zb4_A          111 TKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRV  189 (357)
T ss_dssp             SEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEE
T ss_pred             EEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeE
Confidence            99999999999999999     555 778888999999998888899999  99999998 9999999999999999789


Q ss_pred             EEEcCCchHHHHHHH-cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCC-C
Q 016660          230 IGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG-S  307 (385)
Q Consensus       230 i~~~~~~~~~~~~~~-lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~-~  307 (385)
                      +++++++++.+.+++ +|++.++|+.+.+....+.+.+.+++|++||++|+ ..++.++++++++ |+++.+|..... .
T Consensus       190 i~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~~G~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~  267 (357)
T 2zb4_A          190 VGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDNVGG-NISDTVISQMNEN-SHIILCGQISQYNK  267 (357)
T ss_dssp             EEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEESCCH-HHHHHHHHTEEEE-EEEEECCCGGGTTS
T ss_pred             EEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEECCCH-HHHHHHHHHhccC-cEEEEECCcccccc
Confidence            999999999998887 99999999887555555777766689999999997 4489999999997 999999875321 1


Q ss_pred             ccccc-------HHHHhhcCcEEEEeeecCCC--CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-e
Q 016660          308 QLSLS-------SFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-L  377 (385)
Q Consensus       308 ~~~~~-------~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~  377 (385)
                      .+++.       ...++.+++++.|+....+.  ..+++.++++++++|++++.+  ...|+|+++++||+.+.+++. +
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~--~~~~~l~~~~~A~~~~~~~~~~g  345 (357)
T 2zb4_A          268 DVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKE--TVINGLENMGAAFQSMMTGGNIG  345 (357)
T ss_dssp             CCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCCE--EEEECGGGHHHHHHHHHTTCCSB
T ss_pred             CccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCcc--ceecCHHHHHHHHHHHHcCCCCc
Confidence            22222       14567789999998653321  134688999999999888763  356999999999999988764 6


Q ss_pred             EEEEEeCC
Q 016660          378 RCVIWMGE  385 (385)
Q Consensus       378 k~vi~~~~  385 (385)
                      |+||++++
T Consensus       346 Kvvi~~~~  353 (357)
T 2zb4_A          346 KQIVCISE  353 (357)
T ss_dssp             EEEEECCC
T ss_pred             eEEEEEec
Confidence            99998753

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=1.6e-47  Score=366.14  Aligned_cols=313  Identities=15%  Similarity=0.156  Sum_probs=254.9

Q ss_pred             CeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC---------------------------
Q 016660           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---------------------------   66 (385)
Q Consensus        14 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~---------------------------   66 (385)
                      +++|||++.......+++.++|.|+|+++||+|||.+++||++|+++++|.+.                           
T Consensus         5 ~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~   84 (379)
T 3iup_A            5 ALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSM   84 (379)
T ss_dssp             EEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHH
T ss_pred             hhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccccccc
Confidence            56799999865444599999999999999999999999999999999887521                           


Q ss_pred             --CCCCCccccCceeEEEEEeCCCC-CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccC
Q 016660           67 --PAVFPRILGHEAIGVVESVGENV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR  143 (385)
Q Consensus        67 --~~~~p~~~G~e~~G~V~~vG~~v-~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~  143 (385)
                        ...+|.++|||++|+|+++|++| ++|++||||+..+                                         
T Consensus        85 ~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~-----------------------------------------  123 (379)
T 3iup_A           85 AGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG-----------------------------------------  123 (379)
T ss_dssp             GGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC-----------------------------------------
T ss_pred             ccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC-----------------------------------------
Confidence              13468999999999999999999 8999999997532                                         


Q ss_pred             CceeeccccccceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEE--cCCHHHHHHHHHH
Q 016660          144 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF--GLGSIGLAVAEGA  221 (385)
Q Consensus       144 ~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~--G~g~vG~~ai~la  221 (385)
                               .|+|+||++++++.++++|+++++++||++++...|||+++ +... +++++|||+  |+|++|++++|+|
T Consensus       124 ---------~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag~G~vG~~a~q~a  192 (379)
T 3iup_A          124 ---------GAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAAASNLGQMLNQIC  192 (379)
T ss_dssp             ---------SCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESSTTSHHHHHHHHHH
T ss_pred             ---------CCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCCCCHHHHHHHHHH
Confidence                     13999999999999999999999999999999999999754 5555 899999999  4599999999999


Q ss_pred             HHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhc-----cC--
Q 016660          222 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCR-----KG--  293 (385)
Q Consensus       222 ~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~-----~~--  293 (385)
                      +.+|+ +|++++++++|.++++++|+++++|+++.++.+.+++.+++ ++|+||||+|++...+.++++++     ++  
T Consensus       193 ~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~  271 (379)
T 3iup_A          193 LKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSARE  271 (379)
T ss_dssp             HHHTC-CEEEEESSHHHHHHHHHTTCSCEEETTSTTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCS
T ss_pred             HHCCC-EEEEEECCHHHHHHHHhCCCcEEEeCCChHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccccc
Confidence            99999 79999999999999999999999999987777778888888 99999999999876788888885     43  


Q ss_pred             --------CceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC---CCCc----HHHHHHHHHcCCCCCCCceeee
Q 016660          294 --------WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK---AKSD----IPILLKRYMDKELELDKFVTHE  358 (385)
Q Consensus       294 --------~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~---~~~~----~~~~~~~~~~g~~~~~~~i~~~  358 (385)
                              .|+++.+|...   ..+++...++.+++++.|+++..+.   ..++    ++++++++.+   .+.++++++
T Consensus       272 ~~~~G~~~~g~iv~~G~~~---~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~i~~~  345 (379)
T 3iup_A          272 YSRYGSTTHKQVYLYGGLD---TSPTEFNRNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKT---TFASHYSKE  345 (379)
T ss_dssp             CCTTCCCSCEEEEECCCSE---EEEEEECCCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTTT---TTCCCCSEE
T ss_pred             eeecccccCceEEEecCCC---CCccccccccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHhc---cCCCcceEE
Confidence                    04455554422   1223333456688999998655431   1122    3445555555   256678899


Q ss_pred             eecchH--HHHHHHHhcCCe-eEEEEEeCC
Q 016660          359 MKFEEI--NSAFDLLIKGKC-LRCVIWMGE  385 (385)
Q Consensus       359 ~~l~~~--~~a~~~l~~~~~-~k~vi~~~~  385 (385)
                      |+|+++  ++||+.+.+++. +|+||++++
T Consensus       346 ~~l~~~~~~~A~~~l~~~~~~gKvVv~~~~  375 (379)
T 3iup_A          346 ISLAEVLDLDMIAVYNKRATGEKYLINPNK  375 (379)
T ss_dssp             EEHHHHTCHHHHHHHTTCCTTCCEEEETTT
T ss_pred             ecHHHhhhHHHHHHHhcCCCCceEEEeCCC
Confidence            999999  999999988765 699998863

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=1.5e-45  Score=342.23  Aligned_cols=294  Identities=20%  Similarity=0.269  Sum_probs=245.5

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||+++.+++.+..+.+.|.|+|+++||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+           |
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G   69 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G   69 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence            799999999886567799999999999999999999999999999887653 3679999999999998           9


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      |||+..+                              .+                   |+|+||++++++.++++|++++
T Consensus        70 drV~~~~------------------------------~~-------------------G~~aey~~v~~~~~~~iP~~~~  100 (302)
T 1iz0_A           70 RRYAALV------------------------------PQ-------------------GGLAERVAVPKGALLPLPEGLS  100 (302)
T ss_dssp             EEEEEEC------------------------------SS-------------------CCSBSEEEEEGGGCEECCTTCC
T ss_pred             cEEEEec------------------------------CC-------------------cceeeEEEEcHHHcEeCCCCCC
Confidence            9997542                              12                   3999999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      +++||++++++.|||+++.+.. ++++++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++|+++++|++
T Consensus       101 ~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~  178 (302)
T 1iz0_A          101 PEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYA  178 (302)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGG
T ss_pred             HHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEECC
Confidence            9999999999999999987677 999999999998 9999999999999999 899999999999999999999999875


Q ss_pred             C-CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC-C
Q 016660          255 N-CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL-K  332 (385)
Q Consensus       255 ~-~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~-~  332 (385)
                      + .+..   ...  +++|++|| +|+. .++.++++++++ |+++.+|..... ...++...++.+++++.|+....+ .
T Consensus       179 ~~~~~~---~~~--~~~d~vid-~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~  249 (302)
T 1iz0_A          179 EVPERA---KAW--GGLDLVLE-VRGK-EVEESLGLLAHG-GRLVYIGAAEGE-VAPIPPLRLMRRNLAVLGFWLTPLLR  249 (302)
T ss_dssp             GHHHHH---HHT--TSEEEEEE-CSCT-THHHHHTTEEEE-EEEEEC--------CCCCTTHHHHTTCEEEECCHHHHTT
T ss_pred             cchhHH---HHh--cCceEEEE-CCHH-HHHHHHHhhccC-CEEEEEeCCCCC-CCCcCHHHHHhCCCeEEEEeccchhh
Confidence            4 2222   222  57999999 9985 589999999997 999999975422 224555667889999999865322 1


Q ss_pred             CCCcHHHHHH---HHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          333 AKSDIPILLK---RYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       333 ~~~~~~~~~~---~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      ..++++++++   ++++|++.  ++++++|+|+++++||+.+++++. +|+++++
T Consensus       250 ~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  302 (302)
T 1iz0_A          250 EGALVEEALGFLLPRLGRELR--PVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL  302 (302)
T ss_dssp             CHHHHHHHHHHHGGGBTTTBC--CCEEEEEEGGGHHHHHHHTTCTTCCBEEEEEC
T ss_pred             hHHHHHHHHhhhHHHHcCCcc--cccceEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            2356888999   99999664  568899999999999999988764 6999864

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=2.8e-43  Score=331.47  Aligned_cols=308  Identities=16%  Similarity=0.161  Sum_probs=252.0

Q ss_pred             CCeeeeEEEeccC--C----CCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeC
Q 016660           13 KPIQCRAAIATAP--G----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVG   86 (385)
Q Consensus        13 ~~~~~~a~~~~~~--~----~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG   86 (385)
                      .+|+|||+++.++  +    +.+++.++|.|+|++|||+|||.+++||+.|... .   ....+|.++|||++|+|++. 
T Consensus         4 ~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~---~~~~~p~~~g~e~~G~Vv~~-   78 (333)
T 1v3u_A            4 FMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-S---KRLKEGAVMMGQQVARVVES-   78 (333)
T ss_dssp             CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-T---TTCCTTSBCCCCEEEEEEEE-
T ss_pred             ccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-c---CcCCCCcccccceEEEEEec-
Confidence            3578999999874  3    2388999999999999999999999999988732 1   12346788999999999995 


Q ss_pred             CCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCc
Q 016660           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (385)
Q Consensus        87 ~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~  166 (385)
                       ++++|++||||++.                                                    |+|+||++++++.
T Consensus        79 -~v~~~~vGdrV~~~----------------------------------------------------g~~aey~~v~~~~  105 (333)
T 1v3u_A           79 -KNSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKG  105 (333)
T ss_dssp             -SCTTSCTTCEEEEC----------------------------------------------------CCSBSEEEESSTT
T ss_pred             -CCCCCCCCCEEEec----------------------------------------------------CceEEEEEechHH
Confidence             57889999999642                                                    3899999999999


Q ss_pred             eEECCCC----CCccc-ccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH
Q 016660          167 VVKVDPT----VPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (385)
Q Consensus       167 ~~~iP~~----l~~~~-aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  240 (385)
                      ++++|++    +++++ +|++++++.|||+++.+.++++++++|||+|+ |++|++++|+++..|+ +|+++++++++.+
T Consensus       106 ~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~  184 (333)
T 1v3u_A          106 LEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIA  184 (333)
T ss_dssp             EEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             eEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            9999997    88887 58899999999999878889999999999997 9999999999999999 8999999999999


Q ss_pred             HHHHcCCCeEEeCCC-CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCC----cc-cccHH
Q 016660          241 IGKRFGVTEFVNSKN-CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS----QL-SLSSF  314 (385)
Q Consensus       241 ~~~~lg~~~vv~~~~-~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~----~~-~~~~~  314 (385)
                      .++++|++.++|+.+ .+....+.+.+.+++|++||++|... ++.++++++++ |+++.+|......    .. ..+..
T Consensus       185 ~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~  262 (333)
T 1v3u_A          185 YLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPE  262 (333)
T ss_dssp             HHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEE-EEEEECCCCC-------CCBCCCHH
T ss_pred             HHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCChHH-HHHHHHHHhcC-CEEEEEeccccccCCCCCCCCcCHH
Confidence            999999999999876 45555566666568999999999865 89999999997 9999999754211    11 13556


Q ss_pred             HHhhcCcEEEEeeecCCC---CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          315 EVLHSGKILMGSLFGGLK---AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       315 ~~~~~~~~i~g~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      .++.+++++.|+....+.   ..+.++++++++++|++++...  ..++|+++++||+.+.+++. +|+||++
T Consensus       263 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~--~~~~l~~~~~A~~~~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          263 SIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEH--VTKGFENMPAAFIEMLNGANLGKAVVTA  333 (333)
T ss_dssp             HHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCEE--EEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             HHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCccc--cccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            778899999998654431   1346778999999998877644  45799999999999988764 6999874

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=2.4e-44  Score=371.99  Aligned_cols=305  Identities=19%  Similarity=0.219  Sum_probs=255.3

Q ss_pred             eeEEEeccCCCC--cEEEEeec--CCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIV--DPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~--p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (385)
                      ...+.+..++.+  +++.+.|.  |+|++|||+|||.++|||++|++++.|.++   .|.++|||++|+|+++|++|++|
T Consensus       210 ~~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~---~~~~lG~E~aG~V~~vG~~V~~~  286 (795)
T 3slk_A          210 GWRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASLGSEGAGVVVETGPGVTGL  286 (795)
T ss_dssp             SCCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS---SCCCSCCCEEEEEEEECSSCCSS
T ss_pred             eEEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC---CCccccceeEEEEEEeCCCCCcC
Confidence            345667777754  88887774  578999999999999999999999988764   35679999999999999999999


Q ss_pred             CCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCC
Q 016660           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (385)
Q Consensus        93 ~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~  172 (385)
                      ++||||+...                                                  .|+|+||++++++.++++|+
T Consensus       287 ~vGDrV~~~~--------------------------------------------------~G~~ae~~~v~~~~~~~iP~  316 (795)
T 3slk_A          287 APGDRVMGMI--------------------------------------------------PKAFGPLAVADHRMVTRIPA  316 (795)
T ss_dssp             CTTCEEEECC--------------------------------------------------SSCSSSEEEEETTSEEECCT
T ss_pred             CCCCEEEEEe--------------------------------------------------cCCCcCEEEeehHHEEECCC
Confidence            9999996431                                                  13899999999999999999


Q ss_pred             CCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE
Q 016660          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv  251 (385)
                      ++++++||++++.++|||+++.+.+++++|++|||+|+ |++|++++|+||++|+ +|+++.+++ +.+.++ +|+++++
T Consensus       317 ~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v~  393 (795)
T 3slk_A          317 GWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHLA  393 (795)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGEE
T ss_pred             CCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhhee
Confidence            99999999999999999999988999999999999996 9999999999999999 799987655 666665 9999999


Q ss_pred             eCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecC
Q 016660          252 NSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  330 (385)
Q Consensus       252 ~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  330 (385)
                      ++++.++.+.+++.++| |+|+|||++|++. ++.++++++++ |+++.+|.........+.   ...+++++.+..+..
T Consensus       394 ~~~~~~~~~~i~~~t~g~GvDvVld~~gg~~-~~~~l~~l~~~-Gr~v~iG~~~~~~~~~~~---~~~~~~~~~~~~l~~  468 (795)
T 3slk_A          394 SSRTCDFEQQFLGATGGRGVDVVLNSLAGEF-ADASLRMLPRG-GRFLELGKTDVRDPVEVA---DAHPGVSYQAFDTVE  468 (795)
T ss_dssp             CSSSSTHHHHHHHHSCSSCCSEEEECCCTTT-THHHHTSCTTC-EEEEECCSTTCCCHHHHH---HHSSSEEEEECCGGG
T ss_pred             ecCChhHHHHHHHHcCCCCeEEEEECCCcHH-HHHHHHHhcCC-CEEEEeccccccCccccc---ccCCCCEEEEeeccc
Confidence            99988888789999998 9999999999866 89999999997 999999975433222221   223677777765321


Q ss_pred             CC---CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          331 LK---AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       331 ~~---~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                      ..   ..+.+.++++++++|++.+  ++++.|+++++++||+.+++++. +|+||+++
T Consensus       469 ~~~~~~~~~l~~~~~l~~~g~l~p--~~~~~~~l~~~~eA~~~l~~g~~~GKvVl~~~  524 (795)
T 3slk_A          469 AGPQRIGEMLHELVELFEGRVLEP--LPVTAWDVRQAPEALRHLSQARHVGKLVLTMP  524 (795)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTSCCC--CCEEEEEGGGHHHHHHHHHHTCCCBEEEEECC
T ss_pred             cCHHHHHHHHHHHHHHHHcCCcCC--CcceeEcHHHHHHHHHHHhcCCccceEEEecC
Confidence            11   1246788999999997654  57899999999999999988876 59999875

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=6e-43  Score=330.85  Aligned_cols=313  Identities=17%  Similarity=0.172  Sum_probs=250.7

Q ss_pred             CeeeeEEEec-----cCCC-CcEEE--EeecCC-CCCCeEEEEEeeeecccccccccccCCCC----CCCCccccCceeE
Q 016660           14 PIQCRAAIAT-----APGE-PLVID--EVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFP----AVFPRILGHEAIG   80 (385)
Q Consensus        14 ~~~~~a~~~~-----~~~~-~l~~~--~~~~p~-~~~~eVlVkv~a~~i~~~D~~~~~g~~~~----~~~p~~~G~e~~G   80 (385)
                      +++||++++.     +|+. .+++.  ++|.|. |++|||||||.++++|+.|. ...|.+..    ..+|.++|||++|
T Consensus         2 ~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G   80 (345)
T 2j3h_A            2 TATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQG   80 (345)
T ss_dssp             EEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEE
T ss_pred             CccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeec
Confidence            3456666654     4553 38887  888887 89999999999999888874 34454322    1468899999999


Q ss_pred             EEEE--eCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceee
Q 016660           81 VVES--VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSE  158 (385)
Q Consensus        81 ~V~~--vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~  158 (385)
                      ++++  +|+++++|++||||+..                                                    |+|+|
T Consensus        81 ~~~~GvV~~~v~~~~vGdrV~~~----------------------------------------------------g~~ae  108 (345)
T 2j3h_A           81 YGVSRIIESGHPDYKKGDLLWGI----------------------------------------------------VAWEE  108 (345)
T ss_dssp             EEEEEEEEECSTTCCTTCEEEEE----------------------------------------------------EESBS
T ss_pred             ceEEEEEecCCCCCCCCCEEEee----------------------------------------------------cCcee
Confidence            9999  99999999999999632                                                    38999


Q ss_pred             eEeeccCc--eEECCC---CCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE
Q 016660          159 YTVLDIAH--VVKVDP---TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (385)
Q Consensus       159 ~v~v~~~~--~~~iP~---~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~  232 (385)
                      |++++++.  ++++|+   +++++ +|++++++.|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|+++
T Consensus       109 y~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~  186 (345)
T 2j3h_A          109 YSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGS  186 (345)
T ss_dssp             EEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             EEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEE
Confidence            99998876  999996   35555 67888899999999878889999999999997 9999999999999999 89999


Q ss_pred             cCCchHHHHHH-HcCCCeEEeCCCC-CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCC----
Q 016660          233 DVISEKFEIGK-RFGVTEFVNSKNC-GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG----  306 (385)
Q Consensus       233 ~~~~~~~~~~~-~lg~~~vv~~~~~-~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~----  306 (385)
                      ++++++.+.++ ++|+++++|+.+. +....+.+.+++++|++||++|+. .++.++++++++ |+++.+|.....    
T Consensus       187 ~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~-G~~v~~G~~~~~~~~~  264 (345)
T 2j3h_A          187 AGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGK-MLDAVLVNMNMH-GRIAVCGMISQYNLEN  264 (345)
T ss_dssp             ESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEE-EEEEECCCGGGTTCSS
T ss_pred             eCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCCHH-HHHHHHHHHhcC-CEEEEEccccccccCC
Confidence            99999999998 7999999998763 455556666655899999999985 599999999997 999999875321    


Q ss_pred             CcccccHHHHhhcCcEEEEeeecCCC--CCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEe
Q 016660          307 SQLSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  383 (385)
Q Consensus       307 ~~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~  383 (385)
                      ....++...++.+++++.|+....+.  ..+.+.++++++++|+++  +++++.|+|+++++||+.+++++. +|+||.+
T Consensus       265 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~--~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (345)
T 2j3h_A          265 QEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKIT--YVEDVADGLEKAPEALVGLFHGKNVGKQVVVV  342 (345)
T ss_dssp             CCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSC--CCEEEEESGGGSHHHHHHHHTTCCSSEEEEES
T ss_pred             ccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCc--CcccccCCHHHHHHHHHHHHcCCCceEEEEEe
Confidence            12345556677889999987543321  112388899999999776  456678999999999999988765 5999988


Q ss_pred             CC
Q 016660          384 GE  385 (385)
Q Consensus       384 ~~  385 (385)
                      ++
T Consensus       343 ~~  344 (345)
T 2j3h_A          343 AR  344 (345)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=100.00  E-value=7.9e-33  Score=313.44  Aligned_cols=291  Identities=18%  Similarity=0.161  Sum_probs=233.9

Q ss_pred             cEEEEeecCC-CC--CCeEEEEEeeeecccccccccccCCCCC-------CCCccccCceeEEEEEeCCCCCCCCCCCEE
Q 016660           29 LVIDEVIVDP-PN--SHEVRVRIICTSLCHSDVTFWKMKDFPA-------VFPRILGHEAIGVVESVGENVDGVVEGDVV   98 (385)
Q Consensus        29 l~~~~~~~p~-~~--~~eVlVkv~a~~i~~~D~~~~~g~~~~~-------~~p~~~G~e~~G~V~~vG~~v~~~~~GdrV   98 (385)
                      +.+.+.+... +.  ++||+|||.|+|+|+.|+++..|.++..       ..|.++|+|++|+|.          +||||
T Consensus      1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGdrV 1613 (2512)
T 2vz8_A         1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGRRV 1613 (2512)
T ss_dssp             EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSCCE
T ss_pred             eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCCEE
Confidence            6666655433 33  7999999999999999999998876421       245789999999873          79999


Q ss_pred             EecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCCccc
Q 016660           99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR  178 (385)
Q Consensus        99 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~~~~  178 (385)
                      +..                              ...                   |+|+||++++++.++++|+++++++
T Consensus      1614 ~g~------------------------------~~~-------------------G~~Aeyv~vp~~~v~~iPd~ls~~e 1644 (2512)
T 2vz8_A         1614 MGM------------------------------VPA-------------------EGLATSVLLLQHATWEVPSTWTLEE 1644 (2512)
T ss_dssp             EEE------------------------------CSS-------------------CCSBSEEECCGGGEEECCTTSCHHH
T ss_pred             EEe------------------------------ecC-------------------CceeeEEEcccceEEEeCCCCCHHH
Confidence            632                              222                   3899999999999999999999999


Q ss_pred             ccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeEEeC
Q 016660          179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNS  253 (385)
Q Consensus       179 aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~  253 (385)
                      ||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+||..|+ +|++++.+++|.+++++    +|+++++++
T Consensus      1645 AA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~ 1723 (2512)
T 2vz8_A         1645 AASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANS 1723 (2512)
T ss_dssp             HTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEES
T ss_pred             HHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecC
Confidence            99999999999999988899999999999986 9999999999999999 89999989999998886    789999999


Q ss_pred             CCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      ++.++.+.+++.+++ |+|+|||++++ ..++.++++++++ |+++.+|.......... ...++.+++++.++......
T Consensus      1724 ~~~~~~~~i~~~t~g~GvDvVld~~g~-~~l~~~l~~L~~~-Gr~V~iG~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~ 1800 (2512)
T 2vz8_A         1724 RDTSFEQHVLRHTAGKGVDLVLNSLAE-EKLQASVRCLAQH-GRFLEIGKFDLSNNHAL-GMAVFLKNVTFHGILLDSLF 1800 (2512)
T ss_dssp             SSSHHHHHHHHTTTSCCEEEEEECCCH-HHHHHHHTTEEEE-EEEEECCCHHHHTTCEE-EGGGGGGCCEEEECCGGGTT
T ss_pred             CCHHHHHHHHHhcCCCCceEEEECCCc-hHHHHHHHhcCCC-cEEEEeecccccccCcc-cccccccCCcEEEeeHHHHh
Confidence            886666668888888 89999999974 5599999999997 99999985421111111 23356689999998654432


Q ss_pred             --CCCcHHHHHHHHH----cCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEEeC
Q 016660          333 --AKSDIPILLKRYM----DKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  384 (385)
Q Consensus       333 --~~~~~~~~~~~~~----~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~~-~k~vi~~~  384 (385)
                        ..+.+.++++++.    +|.+  .++++++|+++++++|++.+.+++. +|+||.++
T Consensus      1801 ~~~~~~~~~~l~~l~~~~~~g~l--~p~i~~~f~l~ei~eA~~~l~~g~~~GKvVi~~~ 1857 (2512)
T 2vz8_A         1801 EEGGATWQEVSELLKAGIQEGVV--QPLKCTVFPRTKVEAAFRYMAQGKHIGKVVIQVR 1857 (2512)
T ss_dssp             SSCCHHHHHHHHHHHHHHTTTCS--CCCCEEEEESSTHHHHHHHHHTTCCSSEEEEECS
T ss_pred             hhCHHHHHHHHHHHHHHHHcCCc--CCCcceEecHHHHHHHHHhhhccCccceEEEECC
Confidence              1234555555554    5644  4567899999999999999988775 59999874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.88  E-value=1e-22  Score=176.77  Aligned_cols=184  Identities=23%  Similarity=0.275  Sum_probs=137.8

Q ss_pred             CceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH
Q 016660          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (385)
Q Consensus       165 ~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  243 (385)
                      +.++++|+++++++||++++++.|||+++.+..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4688999999999999999999999998877789999999999996 9999999999999999 8999999999999999


Q ss_pred             HcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcE
Q 016660          244 RFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKI  322 (385)
Q Consensus       244 ~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  322 (385)
                      ++|++.++|..+.+..+.+.+.+.+ ++|++||++|... ++.++++++++ |+++.+|........+++.. ++.++++
T Consensus        81 ~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~~  157 (198)
T 1pqw_A           81 RLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPG-GRFIELGKKDVYADASLGLA-ALAKSAS  157 (198)
T ss_dssp             TTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEE-EEEEECSCGGGTTTCEEEGG-GGTTTCE
T ss_pred             HcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCchHH-HHHHHHHhccC-CEEEEEcCCCCcCcCcCChh-HhcCCcE
Confidence            9999988888775555556666666 8999999998654 89999999997 99999997542112223322 3467888


Q ss_pred             EEEeee------cCCCCCCcHHHHHHHHHcCCCCCC
Q 016660          323 LMGSLF------GGLKAKSDIPILLKRYMDKELELD  352 (385)
Q Consensus       323 i~g~~~------~~~~~~~~~~~~~~~~~~g~~~~~  352 (385)
                      +.+...      ......+.++++++++++|++++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~  193 (198)
T 1pqw_A          158 FSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVL  193 (198)
T ss_dssp             EEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             EEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCC
Confidence            886532      111113568889999999988765

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.20  E-value=8.6e-12  Score=111.25  Aligned_cols=172  Identities=10%  Similarity=0.020  Sum_probs=110.2

Q ss_pred             CCCCCEEEecC-------CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeecc
Q 016660           92 VVEGDVVIPHF-------LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (385)
Q Consensus        92 ~~~GdrV~~~~-------~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~  164 (385)
                      |++||||++.+       ...|+.|.+|..|..+.|...      |... |                   +..+++.++.
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~------g~~~-G-------------------~~~~~~~~~~   57 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVI------GKPE-G-------------------VKINGFEVYR   57 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTT------TCCT-T-------------------EEETTEEEEC
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhc------CCCC-C-------------------CEEEEEEEeC
Confidence            89999999998       788999999998888888532      1111 1                   2222222222


Q ss_pred             CceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH
Q 016660          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (385)
Q Consensus       165 ~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  244 (385)
                      .....+++......++.+. +...+ . +....++.++++||.+|+| .|.+++.+++. +. +|++++.+++..+.+++
T Consensus        58 p~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~~  131 (248)
T 2yvl_A           58 PTLEEIILLGFERKTQIIY-PKDSF-Y-IALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYKTAQK  131 (248)
T ss_dssp             CCHHHHHHHTSCCSSCCCC-HHHHH-H-HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHHHHHH
T ss_pred             CCHHHHHHhcCcCCCCccc-chhHH-H-HHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHHHHHH
Confidence            2111122111111122111 22222 2 4456678899999999998 59999999998 66 99999999998887775


Q ss_pred             c----CC-CeE-EeCCCCCchhHHHHhh-CC-CccEEEEccCCh-HHHHHHHHHhccCCceEEEecc
Q 016660          245 F----GV-TEF-VNSKNCGDKSIIIDMT-DG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       245 l----g~-~~v-v~~~~~~~~~~i~~~~-~g-~~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .    +. +.+ +...+  .    .+.. .+ +||+|+...+.+ ..++.+.+.|+++ |+++....
T Consensus       132 ~~~~~~~~~~~~~~~~d--~----~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  191 (248)
T 2yvl_A          132 NLKKFNLGKNVKFFNVD--F----KDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEG-APVGFLLP  191 (248)
T ss_dssp             HHHHTTCCTTEEEECSC--T----TTSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTT-CEEEEEES
T ss_pred             HHHHcCCCCcEEEEEcC--h----hhcccCCCcccEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence            3    43 222 11111  1    1122 23 799999888776 6789999999997 99988753

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.99  E-value=3.5e-12  Score=122.15  Aligned_cols=182  Identities=14%  Similarity=0.180  Sum_probs=129.4

Q ss_pred             ccccCceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccc
Q 016660           72 RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFV  151 (385)
Q Consensus        72 ~~~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~  151 (385)
                      ...|++.++.|.++|++++.+.+|+.+++.+.-                             .+           +..+.
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk-----------------------------~~-----------~~~~~  114 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVK-----------------------------KA-----------YDRAA  114 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHH-----------------------------HH-----------HHHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHH-----------------------------HH-----------HHHHH
Confidence            457899999999999999999999987532100                             00           00011


Q ss_pred             cccceeeeEeeccCceEECCCCCCcccccccccchhhhhhhhhhhc---cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCE
Q 016660          152 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATR  228 (385)
Q Consensus       152 ~~g~~~~~v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~---~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~  228 (385)
                      ..|++++|+......++.+|++++.+.++.. .++.++|.++....   .-.++++|+|+|+|.+|.++++.++..|+++
T Consensus       115 ~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~  193 (404)
T 1gpj_A          115 RLGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRA  193 (404)
T ss_dssp             HHTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSE
T ss_pred             HcCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCE
Confidence            1247888888888889999999887776653 47778887653222   1257999999999999999999999999988


Q ss_pred             EEEEcCCchHH-HHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHH--HHHHH--h--ccCCceEEEec
Q 016660          229 IIGVDVISEKF-EIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQ--EAYAC--C--RKGWGKTIVLG  301 (385)
Q Consensus       229 vi~~~~~~~~~-~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~--~~~~~--l--~~~~G~~v~~g  301 (385)
                      |+++++++++. ++++++|++ ++++.+      +.+.. .++|+||++++.+..+.  ..+..  +  +++ +.+++++
T Consensus       194 V~v~~r~~~ra~~la~~~g~~-~~~~~~------l~~~l-~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~-~~~v~vd  264 (404)
T 1gpj_A          194 VLVANRTYERAVELARDLGGE-AVRFDE------LVDHL-ARSDVVVSATAAPHPVIHVDDVREALRKRDRR-SPILIID  264 (404)
T ss_dssp             EEEECSSHHHHHHHHHHHTCE-ECCGGG------HHHHH-HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSC-CCEEEEE
T ss_pred             EEEEeCCHHHHHHHHHHcCCc-eecHHh------HHHHh-cCCCEEEEccCCCCceecHHHHHHHHHhccCC-CCEEEEE
Confidence            99999999886 678889975 333322      22222 26999999998765331  34554  4  455 7777776


Q ss_pred             cC
Q 016660          302 VD  303 (385)
Q Consensus       302 ~~  303 (385)
                      ..
T Consensus       265 ia  266 (404)
T 1gpj_A          265 IA  266 (404)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.68  E-value=2.3e-08  Score=94.08  Aligned_cols=139  Identities=21%  Similarity=0.147  Sum_probs=96.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe--EEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~--vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      +++|+|+|+|++|+++++.|+.+|+ +|+++++++++.+.++++++..  +++...    ..+.+... ++|+||++++.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~DvVI~~~~~  240 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS----AEIETAVA-EADLLIGAVLV  240 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH----HHHHHHHH-TCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeCCH----HHHHHHHc-CCCEEEECCCc
Confidence            4899999999999999999999999 9999999999999998877654  333322    11222221 69999999987


Q ss_pred             hHH------HHHHHHHhccCCceEEEeccCCCCC-----cccccHHHHhhcCcEEEEeeecCCC---------CCCcHHH
Q 016660          280 ASL------VQEAYACCRKGWGKTIVLGVDQPGS-----QLSLSSFEVLHSGKILMGSLFGGLK---------AKSDIPI  339 (385)
Q Consensus       280 ~~~------~~~~~~~l~~~~G~~v~~g~~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~~~---------~~~~~~~  339 (385)
                      +..      .+..++.++++ |.++.++...+..     ..+++...+..+++++.+.......         .+..+..
T Consensus       241 ~~~~~~~li~~~~~~~~~~g-~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~~~  319 (361)
T 1pjc_A          241 PGRRAPILVPASLVEQMRTG-SVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLPY  319 (361)
T ss_dssp             TTSSCCCCBCHHHHTTSCTT-CEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCeecCHHHHhhCCCC-CEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHHHH
Confidence            552      46778899997 9999998754321     2234433455677887775311100         0123556


Q ss_pred             HHHHHHcC
Q 016660          340 LLKRYMDK  347 (385)
Q Consensus       340 ~~~~~~~g  347 (385)
                      +++++.+|
T Consensus       320 l~~l~~~G  327 (361)
T 1pjc_A          320 VVKLANQG  327 (361)
T ss_dssp             HHHHHHHG
T ss_pred             HHHHHhCC
Confidence            77777777

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.66  E-value=3.3e-09  Score=102.91  Aligned_cols=170  Identities=15%  Similarity=0.118  Sum_probs=110.3

Q ss_pred             hhhhhhhhhhhcc--CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHH
Q 016660          186 VSTGVGAAWRTAN--VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIII  263 (385)
Q Consensus       186 ~~ta~~al~~~~~--~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~  263 (385)
                      ..++|.++ .+..  ..+|++|+|+|.|.+|..+++.++.+|+ +|+++++++++.+.++++|++ +++     ..    
T Consensus       257 ~~s~~~g~-~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~~-----l~----  324 (494)
T 3ce6_A          257 RHSLIDGI-NRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VVT-----VE----  324 (494)
T ss_dssp             HHHHHHHH-HHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECC-----HH----
T ss_pred             hhhhhHHH-HhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Eec-----HH----
Confidence            34455543 2333  6789999999999999999999999999 999999999998888999985 322     11    


Q ss_pred             HhhCCCccEEEEccCChHHHH-HHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCc---EEEEeeecCCCCCCcHHH
Q 016660          264 DMTDGGADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK---ILMGSLFGGLKAKSDIPI  339 (385)
Q Consensus       264 ~~~~g~~d~vid~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~---~i~g~~~~~~~~~~~~~~  339 (385)
                      +.. .++|+|++++|+...+. +.++.++++ ++++.+|...    ..++...+..+.+   ++.+.. ..+. ...+..
T Consensus       325 e~l-~~aDvVi~atgt~~~i~~~~l~~mk~g-gilvnvG~~~----~eId~~aL~~~aL~~~~I~~~l-dv~~-~~~~~~  396 (494)
T 3ce6_A          325 EAI-GDADIVVTATGNKDIIMLEHIKAMKDH-AILGNIGHFD----NEIDMAGLERSGATRVNVKPQV-DLWT-FGDTGR  396 (494)
T ss_dssp             HHG-GGCSEEEECSSSSCSBCHHHHHHSCTT-CEEEECSSSG----GGBCHHHHHHTTCEEEEEETTE-EEEE-CTTTCC
T ss_pred             HHH-hCCCEEEECCCCHHHHHHHHHHhcCCC-cEEEEeCCCC----CccCHHHHHHhhhccceEEEEE-EEee-cCCcch
Confidence            111 25899999999887665 788999997 9999998642    2355555555444   444322 1110 011112


Q ss_pred             HHHHHHcCCCC------CC--CceeeeeecchHHHHHHHHhcCCe
Q 016660          340 LLKRYMDKELE------LD--KFVTHEMKFEEINSAFDLLIKGKC  376 (385)
Q Consensus       340 ~~~~~~~g~~~------~~--~~i~~~~~l~~~~~a~~~l~~~~~  376 (385)
                      .+.++..|++.      +.  ..+++.| ++++.++++.+.++..
T Consensus       397 ~l~LL~~grlvnL~~~TPH~a~~~~~s~-~~qa~~ai~~~~~g~~  440 (494)
T 3ce6_A          397 SIIVLSEGRLLNLGNATGHPSFVMSNSF-ANQTIAQIELWTKNDE  440 (494)
T ss_dssp             EEEEEGGGSCHHHHHSCCSCHHHHHHHH-HHHHHHHHHHHHTGGG
T ss_pred             HHHHHhCCCEEeccCCCCCccccchHHH-HHHHHHHHHHHHcCCC
Confidence            22334444442      11  1122233 5678888887776544

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.59  E-value=1.3e-07  Score=89.74  Aligned_cols=145  Identities=20%  Similarity=0.254  Sum_probs=96.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCC---------------C----chh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNC---------------G----DKS  260 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~---------------~----~~~  260 (385)
                      ++++|+|+|+|.+|+.++++|+.+|+ +|+++++++++.+.++++|++.+ ++..+.               .    ...
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            68999999999999999999999999 79999999999999989998754 233110               0    011


Q ss_pred             HHHHhhCCCccEEEEcc---CCh--HHH-HHHHHHhccCCceEEEeccCCCC-CcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          261 IIIDMTDGGADYCFECV---GLA--SLV-QEAYACCRKGWGKTIVLGVDQPG-SQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       261 ~i~~~~~g~~d~vid~~---g~~--~~~-~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      .+.+... ++|+||+++   |.+  ..+ ++.++.++++ +.++.++...+. -..+.+...+..+++++.+...  +. 
T Consensus       250 ~l~~~~~-~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g-~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~--~p-  324 (384)
T 1l7d_A          250 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTN--VP-  324 (384)
T ss_dssp             HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSS--GG-
T ss_pred             HHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-CEEEEEecCCCCCeecccCCcEEEECCEEEEEeCC--Cc-
Confidence            1333333 699999999   432  222 6788999997 999999864221 1122222234457888888642  11 


Q ss_pred             CCcHHHHHHHHHcCCCCC
Q 016660          334 KSDIPILLKRYMDKELEL  351 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~~~~  351 (385)
                      ......+.+++.++.+++
T Consensus       325 ~~~~~~a~~l~~~~~~~~  342 (384)
T 1l7d_A          325 SRVAADASPLFAKNLLNF  342 (384)
T ss_dssp             GGGHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhHHHH
Confidence            123455777777765443

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.53  E-value=1.8e-07  Score=88.53  Aligned_cols=120  Identities=17%  Similarity=0.158  Sum_probs=85.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      ++++|+|+|+|.+|+.+++.|+.+|+ +|+++++++++.+.+++ +|+....+...   ...+.+... ++|+||+|++.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~~---~~~l~~~l~-~aDvVi~~~~~  241 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSS---AYELEGAVK-RADLVIGAVLV  241 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEECC---HHHHHHHHH-HCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccCC---HHHHHHHHc-CCCEEEECCCc
Confidence            58999999999999999999999999 89999999999888876 77763232222   111222222 58999999986


Q ss_pred             hHH------HHHHHHHhccCCceEEEeccCCCC-----CcccccHHHHhhcCcEEEEe
Q 016660          280 ASL------VQEAYACCRKGWGKTIVLGVDQPG-----SQLSLSSFEVLHSGKILMGS  326 (385)
Q Consensus       280 ~~~------~~~~~~~l~~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~i~g~  326 (385)
                      +..      .++.++.++++ +.++.++...+.     ++.+++...+..+++.+.++
T Consensus       242 p~~~t~~li~~~~l~~mk~g-~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~  298 (377)
T 2vhw_A          242 PGAKAPKLVSNSLVAHMKPG-AVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCV  298 (377)
T ss_dssp             TTSCCCCCBCHHHHTTSCTT-CEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECB
T ss_pred             CCCCCcceecHHHHhcCCCC-cEEEEEecCCCCccccccCCCCCCCEEEECCEEEEec
Confidence            653      56788999997 999999854321     23333333344567776654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.46  E-value=4.7e-07  Score=85.45  Aligned_cols=141  Identities=20%  Similarity=0.223  Sum_probs=87.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+++ +|.....+..+   ...+.+... ++|+||++++.
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~~~---~~~l~~~~~-~~DvVi~~~g~  239 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTAT---EANIKKSVQ-HADLLIGAVLV  239 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEECC---HHHHHHHHH-HCSEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEecCC---HHHHHHHHh-CCCEEEECCCC
Confidence            46899999999999999999999999 89999999998887765 77763333322   112222222 58999999997


Q ss_pred             hHH------HHHHHHHhccCCceEEEeccCCCCC-----cccccHHHHhhcCcEEEEeeecCCC---------CCCcHHH
Q 016660          280 ASL------VQEAYACCRKGWGKTIVLGVDQPGS-----QLSLSSFEVLHSGKILMGSLFGGLK---------AKSDIPI  339 (385)
Q Consensus       280 ~~~------~~~~~~~l~~~~G~~v~~g~~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~~~---------~~~~~~~  339 (385)
                      +..      .+..++.++++ |.++.++...+..     +.+++...+..+++.+.+.......         .+..++.
T Consensus       240 ~~~~~~~li~~~~l~~mk~g-g~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~  318 (369)
T 2eez_A          240 PGAKAPKLVTRDMLSLMKEG-AVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPY  318 (369)
T ss_dssp             ------CCSCHHHHTTSCTT-CEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHH
T ss_pred             CccccchhHHHHHHHhhcCC-CEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHH
Confidence            642      46788999997 9999998653221     1233333344567777765311100         1233556


Q ss_pred             HHHHHHcC
Q 016660          340 LLKRYMDK  347 (385)
Q Consensus       340 ~~~~~~~g  347 (385)
                      +++++.+|
T Consensus       319 l~~l~~~g  326 (369)
T 2eez_A          319 VLKLAEKG  326 (369)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHhcC
Confidence            67777666

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.41  E-value=5.7e-07  Score=85.62  Aligned_cols=123  Identities=19%  Similarity=0.220  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE-eCCC-----C------Cch------hHH
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKN-----C------GDK------SII  262 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv-~~~~-----~------~~~------~~i  262 (385)
                      ++.+|+|+|+|.+|+.++++|+.+|+ +|+++++++++.+.++++|++.+. +..+     .      ...      ..+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            58999999999999999999999999 899999999999999999987441 2110     0      000      012


Q ss_pred             HHhhCCCccEEEEccCCh-----HHH-HHHHHHhccCCceEEEeccCCCCCcccccH--H-HHhhcCcEEEEee
Q 016660          263 IDMTDGGADYCFECVGLA-----SLV-QEAYACCRKGWGKTIVLGVDQPGSQLSLSS--F-EVLHSGKILMGSL  327 (385)
Q Consensus       263 ~~~~~g~~d~vid~~g~~-----~~~-~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~--~-~~~~~~~~i~g~~  327 (385)
                      .+... ++|+||++++.+     ..+ ++.++.++++ +.++.++...+. .++.+.  . .+..+++++.|..
T Consensus       250 ~e~~~-~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g-~vIVdva~~~Gg-~v~~~~~~~p~~~~~gv~i~g~~  320 (401)
T 1x13_A          250 AAQAK-EVDIIVTTALIPGKPAPKLITREMVDSMKAG-SVIVDLAAQNGG-NCEYTVPGEIFTTENGVKVIGYT  320 (401)
T ss_dssp             HHHHH-HCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGTC-SBTTCCTTSEEECTTSCEEECCS
T ss_pred             HHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-cEEEEEcCCCCC-CcCcccCCCceEEECCEEEEeeC
Confidence            23222 589999995332     223 5788999997 999999964222 122221  1 1445788998864

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.07  E-value=4e-06  Score=75.24  Aligned_cols=94  Identities=16%  Similarity=0.139  Sum_probs=69.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHHcCCC-eEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~-~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      .++.+||.+|+|. |.++..+++.. |. +|++++.+++.++.+++.+.. .++..+. ...    .+..+.||+|+.. 
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~----~~~~~~fD~v~~~-  155 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRL----PFSDTSMDAIIRI-  155 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT-TSC----SBCTTCEEEEEEE-
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEEcch-hhC----CCCCCceeEEEEe-
Confidence            6788999999988 99999999986 66 899999999999998887643 2222221 111    1223479999954 


Q ss_pred             CChHHHHHHHHHhccCCceEEEecc
Q 016660          278 GLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       278 g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .....++++.+.|+++ |+++....
T Consensus       156 ~~~~~l~~~~~~L~pg-G~l~~~~~  179 (269)
T 1p91_A          156 YAPCKAEELARVVKPG-GWVITATP  179 (269)
T ss_dssp             SCCCCHHHHHHHEEEE-EEEEEEEE
T ss_pred             CChhhHHHHHHhcCCC-cEEEEEEc
Confidence            4455589999999997 99887754

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.07  E-value=6.4e-06  Score=74.33  Aligned_cols=102  Identities=18%  Similarity=0.266  Sum_probs=72.8

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHH----cCC-CeE-EeCCCCCchhHHHHh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGV-TEF-VNSKNCGDKSIIIDM  265 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~-~~v-v~~~~~~~~~~i~~~  265 (385)
                      +.....+.++++||-+|+|. |.+++.+++..+ ..+|++++.+++..+.+++    .|. +.+ +...+  .    ...
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~----~~~  176 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD--I----SEG  176 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC--G----GGC
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECC--H----HHc
Confidence            34556788999999999987 888899999864 2399999999988887765    354 222 11112  1    122


Q ss_pred             hC-CCccEEEEccCCh-HHHHHHHHHhccCCceEEEecc
Q 016660          266 TD-GGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       266 ~~-g~~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .. +.||+|+...+.+ ..++.+.+.|+++ |.++++..
T Consensus       177 ~~~~~~D~V~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  214 (277)
T 1o54_A          177 FDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCP  214 (277)
T ss_dssp             CSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEES
T ss_pred             ccCCccCEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence            23 3799998766655 6688999999997 99887753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.05  E-value=1.6e-05  Score=65.04  Aligned_cols=91  Identities=21%  Similarity=0.164  Sum_probs=64.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      ..++.+|+|+|+|.+|..+++.++..|+ +|+++++++++.+.++ +.|... +..+. .....+.+..-.++|+||.++
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~-~~~d~-~~~~~l~~~~~~~ad~Vi~~~   92 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFT-VVGDA-AEFETLKECGMEKADMVFAFT   92 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEE-EESCT-TSHHHHHTTTGGGCSEEEECS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcE-EEecC-CCHHHHHHcCcccCCEEEEEe
Confidence            4567899999999999999999999999 8999999998887776 667653 33222 122222222112699999999


Q ss_pred             CChHHHHHHHHHhcc
Q 016660          278 GLASLVQEAYACCRK  292 (385)
Q Consensus       278 g~~~~~~~~~~~l~~  292 (385)
                      +.......+...++.
T Consensus        93 ~~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           93 NDDSTNFFISMNARY  107 (155)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHH
Confidence            998755555555554

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.05  E-value=5.6e-05  Score=58.22  Aligned_cols=93  Identities=18%  Similarity=0.173  Sum_probs=66.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      +.+|+|+|+|.+|..+++.+...| + +|+++++++++.+.+...+...+ .|..+   ...+.+... ++|+||++++.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~-~~d~vi~~~~~   79 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAVLNRMGVATKQVDAKD---EAGLAKALG-GFDAVISAAPF   79 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHHHHTTTCEEEECCTTC---HHHHHHHTT-TCSEEEECSCG
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhCCCcEEEecCCC---HHHHHHHHc-CCCEEEECCCc
Confidence            467999999999999999999999 6 89999999999888876666533 23322   233444433 69999999987


Q ss_pred             hHHHHHHHHHhccCCceEEEe
Q 016660          280 ASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      ....+....+...+ ..++.+
T Consensus        80 ~~~~~~~~~~~~~g-~~~~~~   99 (118)
T 3ic5_A           80 FLTPIIAKAAKAAG-AHYFDL   99 (118)
T ss_dssp             GGHHHHHHHHHHTT-CEEECC
T ss_pred             hhhHHHHHHHHHhC-CCEEEe
Confidence            66444455555554 555544

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.03  E-value=2.6e-05  Score=70.48  Aligned_cols=99  Identities=14%  Similarity=0.150  Sum_probs=74.0

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc----CCCeE-EeCCCCCchhHHHHhhCCCc
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTEF-VNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~~v-v~~~~~~~~~~i~~~~~g~~  270 (385)
                      .++++++++||.+|+|+.++.++.+|+..|+ +|++++.+++.++.+++.    |.+.+ +...+  .    .++.++.|
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gD--a----~~l~d~~F  189 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGD--E----TVIDGLEF  189 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESC--G----GGGGGCCC
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECc--h----hhCCCCCc
Confidence            4678999999999998878888888888898 999999999998887753    54322 11111  1    22333489


Q ss_pred             cEEEEccCCh---HHHHHHHHHhccCCceEEEecc
Q 016660          271 DYCFECVGLA---SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       271 d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      |+|+.....+   ..++++.+.|+++ |+++....
T Consensus       190 DvV~~~a~~~d~~~~l~el~r~LkPG-G~Lvv~~~  223 (298)
T 3fpf_A          190 DVLMVAALAEPKRRVFRNIHRYVDTE-TRIIYRTY  223 (298)
T ss_dssp             SEEEECTTCSCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred             CEEEECCCccCHHHHHHHHHHHcCCC-cEEEEEcC
Confidence            9999765543   5588999999997 99987653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.90  E-value=7.6e-06  Score=66.12  Aligned_cols=106  Identities=12%  Similarity=0.080  Sum_probs=73.1

Q ss_pred             hhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCeEEeCCCCCchhHHHH
Q 016660          186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSIIID  264 (385)
Q Consensus       186 ~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~i~~  264 (385)
                      .++++.++ +......+.+|+|+|+|.+|...++.++..|+ +|++.++++++.+. +++++.+ +....+  .    .+
T Consensus         6 ~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~-~~~~~~--~----~~   76 (144)
T 3oj0_A            6 VSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYE-YVLIND--I----DS   76 (144)
T ss_dssp             CSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCE-EEECSC--H----HH
T ss_pred             ccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCc-eEeecC--H----HH
Confidence            34555544 33344458999999999999999999988999 59999999888654 6677753 223333  1    22


Q ss_pred             hhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          265 MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       265 ~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      .. .++|+||.+++....+.. ...++++ +.++.++..
T Consensus        77 ~~-~~~Divi~at~~~~~~~~-~~~l~~g-~~vid~~~p  112 (144)
T 3oj0_A           77 LI-KNNDVIITATSSKTPIVE-ERSLMPG-KLFIDLGNP  112 (144)
T ss_dssp             HH-HTCSEEEECSCCSSCSBC-GGGCCTT-CEEEECCSS
T ss_pred             Hh-cCCCEEEEeCCCCCcEee-HHHcCCC-CEEEEccCC
Confidence            11 158999999998753222 2677886 888888753

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.90  E-value=3.4e-05  Score=72.69  Aligned_cols=123  Identities=17%  Similarity=0.242  Sum_probs=82.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe-------------CCC-CCch------h
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN-------------SKN-CGDK------S  260 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~-------------~~~-~~~~------~  260 (385)
                      ++.+|+|+|+|.+|+.++++|+.+|+ +|++.++++++++.++++|++.+..             +.. .+..      .
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            67899999999999999999999999 8999999999999999999863211             100 0000      0


Q ss_pred             HHHHhhCCCccEEEEccCCh-----H-HHHHHHHHhccCCceEEEeccCCCCCcccc--cHHHHhhcCcEEEEee
Q 016660          261 IIIDMTDGGADYCFECVGLA-----S-LVQEAYACCRKGWGKTIVLGVDQPGSQLSL--SSFEVLHSGKILMGSL  327 (385)
Q Consensus       261 ~i~~~~~g~~d~vid~~g~~-----~-~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~--~~~~~~~~~~~i~g~~  327 (385)
                      .+.+... +.|+||.++..+     . .-++.++.++++ +.+|.++...+. .+..  +...+..+++.+.+..
T Consensus       268 ~l~e~l~-~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~G-sVIVDvA~d~GG-~~e~t~~~~~~~~~GV~~~gv~  339 (405)
T 4dio_A          268 LVAEHIA-KQDIVITTALIPGRPAPRLVTREMLDSMKPG-SVVVDLAVERGG-NIEGAEAGKVTEVGGVRIVGHL  339 (405)
T ss_dssp             HHHHHHH-TCSEEEECCCCSSSCCCCCBCHHHHTTSCTT-CEEEETTGGGTC-SBTTCCTTEEEEETTEEEEECS
T ss_pred             HHHHHhc-CCCEEEECCcCCCCCCCEEecHHHHhcCCCC-CEEEEEeCCCCC-CccccCCCCeEEECCEEEEEeC
Confidence            1222221 699999996422     1 136889999997 999998863322 1221  1111234577777764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.84  E-value=5.5e-05  Score=70.68  Aligned_cols=101  Identities=19%  Similarity=0.218  Sum_probs=73.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE-eCCC---CCc------------hhHHHH
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKN---CGD------------KSIIID  264 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv-~~~~---~~~------------~~~i~~  264 (385)
                      ++.+|+|+|+|.+|+.+++.|+.+|+ +|++.++++++.+.++++|++.+- +.+.   ...            ...+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            67899999999999999999999999 899999999999999999986331 1000   000            001222


Q ss_pred             hhCCCccEEEEccCCh-----H-HHHHHHHHhccCCceEEEeccCC
Q 016660          265 MTDGGADYCFECVGLA-----S-LVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       265 ~~~g~~d~vid~~g~~-----~-~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      .. .++|+||.++..+     . .-++.++.++++ +.++.++...
T Consensus       262 ~l-~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpG-sVIVDvA~d~  305 (381)
T 3p2y_A          262 AI-TKFDIVITTALVPGRPAPRLVTAAAATGMQPG-SVVVDLAGET  305 (381)
T ss_dssp             HH-TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGG
T ss_pred             HH-hcCCEEEECCCCCCcccceeecHHHHhcCCCC-cEEEEEeCCC
Confidence            22 2699999986332     1 136889999997 9999998654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.83  E-value=2.1e-05  Score=73.11  Aligned_cols=105  Identities=20%  Similarity=0.227  Sum_probs=68.2

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHHc----C-----------CC--eEEeCC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRF----G-----------VT--EFVNSK  254 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~l----g-----------~~--~vv~~~  254 (385)
                      +.....+.++++||-+|+|. |.+++.+++..|. .+|++++.+++..+.+++.    |           ..  .++..+
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d  175 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  175 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence            33455788999999999877 8888889988763 4899999999888777652    1           11  122211


Q ss_pred             CCCchhHHHHhhCCCccEEEEccCCh-HHHHHHHHHhccCCceEEEecc
Q 016660          255 NCGDKSIIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       255 ~~~~~~~i~~~~~g~~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      -...   ...+..+.||+|+-....+ ..+..+.++|+++ |+++.+..
T Consensus       176 ~~~~---~~~~~~~~fD~V~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~  220 (336)
T 2b25_A          176 ISGA---TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV  220 (336)
T ss_dssp             TTCC---C-------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred             hHHc---ccccCCCCeeEEEECCCCHHHHHHHHHHhcCCC-cEEEEEeC
Confidence            1111   1122233699988554444 4478999999997 99987653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.78  E-value=0.00026  Score=59.41  Aligned_cols=87  Identities=18%  Similarity=0.260  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHHcCCCeEE-eCCCCCchhHHHHhhC-CCccEEEEccC
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSIIIDMTD-GGADYCFECVG  278 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~~vv-~~~~~~~~~~i~~~~~-g~~d~vid~~g  278 (385)
                      +++|+|+|.|.+|...++.++.. |+ .|+++++++++.+.+++.|+..+. |..   ....+.+.++ .++|+||.+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~gd~~---~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISGDAT---DPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEECCTT---CHHHHHTBCSCCCCCEEEECCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEcCCC---CHHHHHhccCCCCCCEEEEeCC
Confidence            56799999999999999999998 99 899999999999988888876443 222   2222333312 27999999999


Q ss_pred             ChHHHHHHHHHhcc
Q 016660          279 LASLVQEAYACCRK  292 (385)
Q Consensus       279 ~~~~~~~~~~~l~~  292 (385)
                      .......+...++.
T Consensus       115 ~~~~~~~~~~~~~~  128 (183)
T 3c85_A          115 HHQGNQTALEQLQR  128 (183)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHH
Confidence            87644444444444

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.73  E-value=0.00017  Score=65.58  Aligned_cols=93  Identities=18%  Similarity=0.216  Sum_probs=72.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.+.+|+|+|.|.+|..+++.++.+|+ +|++.+++.++.+.++++|+.. ++..+      +.++. ...|+|+.+++.
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~~~~~------l~~~l-~~aDvVi~~~p~  223 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGMEP-FHISK------AAQEL-RDVDVCINTIPA  223 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSEE-EEGGG------HHHHT-TTCSEEEECCSS
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCee-cChhh------HHHHh-cCCCEEEECCCh
Confidence            468999999999999999999999999 8999999988877777788653 32221      22322 258999999986


Q ss_pred             hHHHHHHHHHhccCCceEEEecc
Q 016660          280 ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ...-+..+..++++ +.++.++.
T Consensus       224 ~~i~~~~l~~mk~~-~~lin~ar  245 (293)
T 3d4o_A          224 LVVTANVLAEMPSH-TFVIDLAS  245 (293)
T ss_dssp             CCBCHHHHHHSCTT-CEEEECSS
T ss_pred             HHhCHHHHHhcCCC-CEEEEecC
Confidence            44234677888997 88998885

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.67  E-value=0.00016  Score=64.00  Aligned_cols=101  Identities=17%  Similarity=0.214  Sum_probs=72.9

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHHc----CCCe-E-EeCCCCCchhHHHHh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF----GVTE-F-VNSKNCGDKSIIIDM  265 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~l----g~~~-v-v~~~~~~~~~~i~~~  265 (385)
                      +.....+.++++||-+|+|. |.++..+++..+ ..+|++++.+++..+.+++.    |... + +...+  .    .+.
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~----~~~  157 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD--I----YEG  157 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSC--G----GGC
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECc--h----hhc
Confidence            44566788999999999886 888999999853 33999999999888877653    5432 2 21222  1    122


Q ss_pred             hCC-CccEEEEccCCh-HHHHHHHHHhccCCceEEEec
Q 016660          266 TDG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       266 ~~g-~~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ... .+|+|+...+.+ ..++.+.+.|+++ |+++.+.
T Consensus       158 ~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  194 (255)
T 3mb5_A          158 IEEENVDHVILDLPQPERVVEHAAKALKPG-GFFVAYT  194 (255)
T ss_dssp             CCCCSEEEEEECSSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred             cCCCCcCEEEECCCCHHHHHHHHHHHcCCC-CEEEEEE
Confidence            233 699998776665 3689999999997 9998774

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.67  E-value=0.00019  Score=67.82  Aligned_cols=92  Identities=16%  Similarity=0.226  Sum_probs=73.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      .-.|.+|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +.   +      +.+.. ...|+++.|.|
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~~-v~---~------Leeal-~~ADIVi~atg  284 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGFR-LV---K------LNEVI-RQVDIVITCTG  284 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC---C------HHHHT-TTCSEEEECSS
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCCE-ec---c------HHHHH-hcCCEEEECCC
Confidence            4589999999999999999999999999 899999988877767667753 21   1      12222 25899999988


Q ss_pred             ChHHHH-HHHHHhccCCceEEEeccC
Q 016660          279 LASLVQ-EAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       279 ~~~~~~-~~~~~l~~~~G~~v~~g~~  303 (385)
                      +...+. +.+..++++ +.++.+|..
T Consensus       285 t~~lI~~e~l~~MK~g-ailINvgrg  309 (435)
T 3gvp_A          285 NKNVVTREHLDRMKNS-CIVCNMGHS  309 (435)
T ss_dssp             CSCSBCHHHHHHSCTT-EEEEECSST
T ss_pred             CcccCCHHHHHhcCCC-cEEEEecCC
Confidence            776565 889999997 999998864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.65  E-value=0.00064  Score=54.31  Aligned_cols=95  Identities=9%  Similarity=0.093  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      .++|+|+|.|.+|...++.++..|+ .|++++.++++.+.+++.|...+. .+. .....+.+..-..+|+++-+++...
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~-gd~-~~~~~l~~a~i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVL-GNA-ANEEIMQLAHLECAKWLILTIPNGY   83 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEE-SCT-TSHHHHHHTTGGGCSEEEECCSCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEE-CCC-CCHHHHHhcCcccCCEEEEECCChH
Confidence            4679999999999999999999999 899999999999999888876433 222 2222233321227999999999875


Q ss_pred             HHH---HHHHHhccCCceEEEe
Q 016660          282 LVQ---EAYACCRKGWGKTIVL  300 (385)
Q Consensus       282 ~~~---~~~~~l~~~~G~~v~~  300 (385)
                      .-.   ...+.+.+. .+++..
T Consensus        84 ~n~~~~~~a~~~~~~-~~iiar  104 (140)
T 3fwz_A           84 EAGEIVASARAKNPD-IEIIAR  104 (140)
T ss_dssp             HHHHHHHHHHHHCSS-SEEEEE
T ss_pred             HHHHHHHHHHHHCCC-CeEEEE
Confidence            322   233444454 555543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.59  E-value=0.00033  Score=63.87  Aligned_cols=95  Identities=18%  Similarity=0.223  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      --.+.+|+|+|+|.+|..+++.++.+|+ +|++.+++.++.+.+.++|+. +++..+      +.++. .+.|+|+.+++
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~-~~~~~~------l~~~l-~~aDvVi~~~p  224 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV-PFHTDE------LKEHV-KDIDICINTIP  224 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE-EEEGGG------HHHHS-TTCSEEEECCS
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe-EEchhh------HHHHh-hCCCEEEECCC
Confidence            3468999999999999999999999999 899999998887777777764 332221      23332 26899999998


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ....-+..+..++++ +.++.++..
T Consensus       225 ~~~i~~~~~~~mk~g-~~lin~a~g  248 (300)
T 2rir_A          225 SMILNQTVLSSMTPK-TLILDLASR  248 (300)
T ss_dssp             SCCBCHHHHTTSCTT-CEEEECSST
T ss_pred             hhhhCHHHHHhCCCC-CEEEEEeCC
Confidence            754234567888997 889988863

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.56  E-value=0.00036  Score=62.67  Aligned_cols=104  Identities=17%  Similarity=0.209  Sum_probs=72.0

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHHc-----C--CCeE-EeCCCCCchhHHH
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF-----G--VTEF-VNSKNCGDKSIII  263 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~l-----g--~~~v-v~~~~~~~~~~i~  263 (385)
                      +.....+.++++||-+|+| .|.++..+++..+ ..+|++++.+++..+.+++.     |  .+.+ +...+  ....  
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d--~~~~--  165 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD--LADS--  165 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC--GGGC--
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc--hHhc--
Confidence            3455678899999999998 6888999998753 23999999999988877653     4  2222 11112  1110  


Q ss_pred             HhhCCCccEEEEccCCh-HHHHHHHHHhccCCceEEEecc
Q 016660          264 DMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       264 ~~~~g~~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .+..+.||+|+.....+ ..++.+.+.|+++ |+++++..
T Consensus       166 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  204 (280)
T 1i9g_A          166 ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVA  204 (280)
T ss_dssp             CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred             CCCCCceeEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence            11123799998766555 6688999999997 99888753

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.53  E-value=0.00085  Score=53.52  Aligned_cols=77  Identities=16%  Similarity=0.206  Sum_probs=57.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      ..+|+|+|+|.+|...++.+...|+ .|+++++++++.+.+++.|...+ ..+. .....+.+..-.++|+||.+++...
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~-~gd~-~~~~~l~~~~~~~~d~vi~~~~~~~   82 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAV-IADP-TDESFYRSLDLEGVSAVLITGSDDE   82 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEE-ECCT-TCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEE-ECCC-CCHHHHHhCCcccCCEEEEecCCHH
Confidence            4579999999999999999999999 89999999999998888776433 2222 2222233332237999999999765

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.51  E-value=0.00021  Score=68.76  Aligned_cols=91  Identities=16%  Similarity=0.212  Sum_probs=71.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.|.+++|+|+|++|...++.++..|+ +|+++++++.+.+.+...|++ +.+..+          ....+|+++++.|.
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d-v~~lee----------~~~~aDvVi~atG~  330 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ-VLTLED----------VVSEADIFVTTTGN  330 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCGGG----------TTTTCSEEEECSSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc-cCCHHH----------HHHhcCEEEeCCCC
Confidence            478999999999999999999999999 899999998888777777753 222111          11258999999997


Q ss_pred             hHHH-HHHHHHhccCCceEEEeccC
Q 016660          280 ASLV-QEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       280 ~~~~-~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ...+ +..+..++++ +.++.+|..
T Consensus       331 ~~vl~~e~l~~mk~g-aiVvNaG~~  354 (488)
T 3ond_A          331 KDIIMLDHMKKMKNN-AIVCNIGHF  354 (488)
T ss_dssp             SCSBCHHHHTTSCTT-EEEEESSST
T ss_pred             hhhhhHHHHHhcCCC-eEEEEcCCC
Confidence            7655 3488899997 888888864

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.44  E-value=0.00059  Score=64.65  Aligned_cols=92  Identities=18%  Similarity=0.132  Sum_probs=71.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      .-.|.+|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +++     .    .+... ..|+|+.+.|
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~-vv~-----L----eElL~-~ADIVv~atg  311 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFE-VVT-----L----DDAAS-TADIVVTTTG  311 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE-ECC-----H----HHHGG-GCSEEEECCS
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCce-ecc-----H----HHHHh-hCCEEEECCC
Confidence            4689999999999999999999999999 899999888776666666753 221     1    11111 4899999998


Q ss_pred             ChHHH-HHHHHHhccCCceEEEeccC
Q 016660          279 LASLV-QEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       279 ~~~~~-~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +...+ .+.+..|+++ +.++.+|..
T Consensus       312 t~~lI~~e~l~~MK~G-AILINvGRg  336 (464)
T 3n58_A          312 NKDVITIDHMRKMKDM-CIVGNIGHF  336 (464)
T ss_dssp             SSSSBCHHHHHHSCTT-EEEEECSSS
T ss_pred             CccccCHHHHhcCCCC-eEEEEcCCC
Confidence            77644 5888999997 888888864

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.40  E-value=0.0023  Score=56.31  Aligned_cols=167  Identities=10%  Similarity=-0.012  Sum_probs=92.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE---EeCCCCCchhH-HHHhhC--CCccEEE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF---VNSKNCGDKSI-IIDMTD--GGADYCF  274 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v---v~~~~~~~~~~-i~~~~~--g~~d~vi  274 (385)
                      +.+|||.|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+-+....   .|..+...... +.+...  |+.|+++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLV   80 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLV   80 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            468999987 9999999999999999 89999999888877665554332   23332111111 222111  3799999


Q ss_pred             EccCCh-------------------------HHHHHHHHHhccCCceEEEeccCCCCCccccc--H--------------
Q 016660          275 ECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS--S--------------  313 (385)
Q Consensus       275 d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~--~--------------  313 (385)
                      +++|..                         ...+.++..|.+.+|++|.++........+-.  +              
T Consensus        81 NNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~~~~~~Y~asKaal~~ltk~l  160 (247)
T 3ged_A           81 NNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHAL  160 (247)
T ss_dssp             ECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            988741                         11233455554434899988754322111111  0              


Q ss_pred             HHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC
Q 016660          314 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  375 (385)
Q Consensus       314 ~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~  375 (385)
                      ..-+.+++++....-+...+ ...++..+...+ .++..    +.-.-+|+.++..+|.+..
T Consensus       161 A~ela~~IrVN~I~PG~i~t-~~~~~~~~~~~~-~~Pl~----R~g~pediA~~v~fL~s~~  216 (247)
T 3ged_A          161 AMSLGPDVLVNCIAPGWINV-TEQQEFTQEDCA-AIPAG----KVGTPKDISNMVLFLCQQD  216 (247)
T ss_dssp             HHHHTTTSEEEEEEECSBCC-CC---CCHHHHH-TSTTS----SCBCHHHHHHHHHHHHHCS
T ss_pred             HHHHCCCCEEEEEecCcCCC-CCcHHHHHHHHh-cCCCC----CCcCHHHHHHHHHHHHhCC
Confidence            01133577766554333222 122222221111 12222    2334678999998887644

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.38  E-value=0.00052  Score=54.66  Aligned_cols=76  Identities=16%  Similarity=0.331  Sum_probs=54.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      +.+|+|+|+|.+|...++.+...|+ +|+++++++++.+.+++.+.. ++..+. .....+.+..-+++|+|+.+++..
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~-~~~~d~-~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATH-AVIANA-TEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSE-EEECCT-TCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCE-EEEeCC-CCHHHHHhcCCCCCCEEEECCCCc
Confidence            4679999999999999999999998 788898888887766666653 332221 122223332122699999999975

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.33  E-value=0.0014  Score=58.58  Aligned_cols=102  Identities=23%  Similarity=0.227  Sum_probs=70.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCeE---EeCCCCCchhH-HHHhhC--CCcc
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEF---VNSKNCGDKSI-IIDMTD--GGAD  271 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~v---v~~~~~~~~~~-i~~~~~--g~~d  271 (385)
                      -+|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++. ++++|....   .|..+...... +.+...  |+.|
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD  105 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRID  105 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            46889999987 9999999999999999 89999999887764 456775432   23333211111 222211  3699


Q ss_pred             EEEEccCCh-------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          272 YCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       272 ~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ++++++|..                         ...+.++..|+++ |++|.++..
T Consensus       106 iLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~-G~IInisS~  161 (273)
T 4fgs_A          106 VLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG-SSVVLTGST  161 (273)
T ss_dssp             EEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-EEEEEECCG
T ss_pred             EEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CeEEEEeeh
Confidence            999998851                         2234566788886 999988754

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.30  E-value=0.0032  Score=54.79  Aligned_cols=97  Identities=13%  Similarity=0.072  Sum_probs=66.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC-CeE-EeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEF-VNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~~v-v~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+...++ ..+ .|..     ..+.+.. +++|+||+++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~-----~~~~~~~-~~~D~vi~~a   92 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDIVVANLE-----EDFSHAF-ASIDAVVFAA   92 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEEEECCTT-----SCCGGGG-TTCSEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceEEEcccH-----HHHHHHH-cCCCEEEECC
Confidence            4678999997 9999999999999999 89999999998888777676 432 2322     1122322 2699999999


Q ss_pred             CChH-------------HHHHHHHHhcc-CCceEEEeccCC
Q 016660          278 GLAS-------------LVQEAYACCRK-GWGKTIVLGVDQ  304 (385)
Q Consensus       278 g~~~-------------~~~~~~~~l~~-~~G~~v~~g~~~  304 (385)
                      |...             ....+++.+++ +.++++.++...
T Consensus        93 g~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  133 (236)
T 3e8x_A           93 GSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG  133 (236)
T ss_dssp             CCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred             CCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            8531             11223333322 226899888754

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.26  E-value=0.0028  Score=54.10  Aligned_cols=100  Identities=18%  Similarity=0.235  Sum_probs=71.1

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-e--EEeCCCCCchhHHHHh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-E--FVNSKNCGDKSIIIDM  265 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~--vv~~~~~~~~~~i~~~  265 (385)
                      +.....+.++++||-+|+|. |..++.+++. +. +|++++.+++..+.+++    +|.. .  ++..+-   ..   .+
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~---~~  117 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA---PA---AL  117 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT---TG---GG
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch---hh---hc
Confidence            33556788999999999976 8888889888 77 99999999998887664    4544 2  222222   11   01


Q ss_pred             hC-CCccEEEEccCChH-HHHHHHHHhccCCceEEEecc
Q 016660          266 TD-GGADYCFECVGLAS-LVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       266 ~~-g~~d~vid~~g~~~-~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .. +.||+|+...+... .++.+.+.|+++ |++++...
T Consensus       118 ~~~~~~D~v~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~  155 (204)
T 3njr_A          118 ADLPLPEAVFIGGGGSQALYDRLWEWLAPG-TRIVANAV  155 (204)
T ss_dssp             TTSCCCSEEEECSCCCHHHHHHHHHHSCTT-CEEEEEEC
T ss_pred             ccCCCCCEEEECCcccHHHHHHHHHhcCCC-cEEEEEec
Confidence            11 26999986654333 688999999997 99987654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.22  E-value=0.0017  Score=61.44  Aligned_cols=111  Identities=17%  Similarity=0.189  Sum_probs=80.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      .-.|.+|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|...+    +      +.+... ..|+++.+.+
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~~~----s------L~eal~-~ADVVilt~g  275 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQVL----L------VEDVVE-EAHIFVTTTG  275 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC----C------HHHHTT-TCSEEEECSS
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCeec----C------HHHHHh-hCCEEEECCC
Confidence            3468999999999999999999999999 89999998887777777776421    1      222222 5899999888


Q ss_pred             ChHHHH-HHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEe
Q 016660          279 LASLVQ-EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  326 (385)
Q Consensus       279 ~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  326 (385)
                      +...+. +.+..|+++ ..++.+|..    ...++...+..+..+..+.
T Consensus       276 t~~iI~~e~l~~MK~g-AIVINvgRg----~vEID~~~L~~~~~~~~~i  319 (436)
T 3h9u_A          276 NDDIITSEHFPRMRDD-AIVCNIGHF----DTEIQVAWLKANAKERVEV  319 (436)
T ss_dssp             CSCSBCTTTGGGCCTT-EEEEECSSS----GGGBCHHHHHHHCSEEEEE
T ss_pred             CcCccCHHHHhhcCCC-cEEEEeCCC----CCccCHHHHHhhcCceEee
Confidence            765444 677888996 888888742    2346666665555555444

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.20  E-value=0.0015  Score=54.00  Aligned_cols=104  Identities=20%  Similarity=0.190  Sum_probs=71.7

Q ss_pred             hhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-eEEeCCCCCchhHHHHhhCC
Q 016660          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       194 ~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~vv~~~~~~~~~~i~~~~~g  268 (385)
                      .....+.++++||-+|+|. |..+..+++..+..+|++++.+++..+.+++    .|.. .++-..+  ....+ ....+
T Consensus        18 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d--~~~~~-~~~~~   93 (178)
T 3hm2_A           18 ISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQG--APRAF-DDVPD   93 (178)
T ss_dssp             HHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECC--TTGGG-GGCCS
T ss_pred             HHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecc--hHhhh-hccCC
Confidence            3455678899999999986 8899999988743499999999988887764    4544 3321122  11111 11114


Q ss_pred             CccEEEEccCCh--HHHHHHHHHhccCCceEEEecc
Q 016660          269 GADYCFECVGLA--SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       269 ~~d~vid~~g~~--~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .||+|+......  ..++.+.+.|+++ |+++....
T Consensus        94 ~~D~i~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  128 (178)
T 3hm2_A           94 NPDVIFIGGGLTAPGVFAAAWKRLPVG-GRLVANAV  128 (178)
T ss_dssp             CCSEEEECC-TTCTTHHHHHHHTCCTT-CEEEEEEC
T ss_pred             CCCEEEECCcccHHHHHHHHHHhcCCC-CEEEEEee
Confidence            799999655443  3689999999997 99987653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.19  E-value=0.0035  Score=56.29  Aligned_cols=101  Identities=24%  Similarity=0.262  Sum_probs=62.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH-HH----HHHHcCCCeEEeCCCCCchhHHHH----hh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FE----IGKRFGVTEFVNSKNCGDKSIIID----MT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~----~~~~lg~~~vv~~~~~~~~~~i~~----~~--~g  268 (385)
                      ++.++||.|+ |++|...++.+...|+ +|++++++.++ .+    .+++.|....+-.-+......+..    ..  -+
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g  106 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG  106 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4678999987 9999999999999999 88888777643 22    233445432221112122222221    11  13


Q ss_pred             CccEEEEccCCh----------H---------------HHHHHHHHhccCCceEEEeccC
Q 016660          269 GADYCFECVGLA----------S---------------LVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       269 ~~d~vid~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ++|++|+++|..          .               ..+.+++.++.+ |++|.++..
T Consensus       107 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~  165 (283)
T 1g0o_A          107 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI  165 (283)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEech
Confidence            699999998842          1               124455566565 899988753

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.16  E-value=0.0043  Score=55.25  Aligned_cols=78  Identities=26%  Similarity=0.323  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCeEEeCCCCCchhHHHHhh------CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSIIIDMT------DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~i~~~~------~g~~d~  272 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+. .++++....+-.-+......+.++.      -+++|+
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDI  104 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence            5788999987 9999999999999999 89999888877654 4456654322222222222222221      137999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus       105 lvnnAg~  111 (266)
T 3grp_A          105 LVNNAGI  111 (266)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999985

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.14  E-value=0.00082  Score=57.22  Aligned_cols=132  Identities=17%  Similarity=0.285  Sum_probs=80.2

Q ss_pred             ceeeeEe-eccCceEECCCCCCcccccccccchhhhhhhhhhhc--cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEE
Q 016660          155 SFSEYTV-LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA--NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  231 (385)
Q Consensus       155 ~~~~~v~-v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~--~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~  231 (385)
                      .|.+|.. .+....+.+++++++..+.. +   .+..  +....  .+.++.+||-+|+|. |..+..+++ .+..+|++
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~---~~~~--~~~~l~~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~   88 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH-Q---TTQL--AMLGIERAMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLA   88 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCH-H---HHHH--HHHHHHHHCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCC-c---cHHH--HHHHHHHhccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEE
Confidence            5777777 67778888888876655421 1   1111  11111  267889999999876 777777776 45559999


Q ss_pred             EcCCchHHHHHHH----cCCC--eEEeCCCCCchhHHHHhhCCCccEEEEccCChH---HHHHHHHHhccCCceEEEecc
Q 016660          232 VDVISEKFEIGKR----FGVT--EFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS---LVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       232 ~~~~~~~~~~~~~----lg~~--~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~---~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ++.+++..+.+++    .+..  .++..+-       .....+.||+|+.......   .++.+.+.|+++ |+++....
T Consensus        89 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-------~~~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  160 (205)
T 3grz_A           89 TDISDESMTAAEENAALNGIYDIALQKTSL-------LADVDGKFDLIVANILAEILLDLIPQLDSHLNED-GQVIFSGI  160 (205)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCCEEEESST-------TTTCCSCEEEEEEESCHHHHHHHGGGSGGGEEEE-EEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEeccc-------cccCCCCceEEEECCcHHHHHHHHHHHHHhcCCC-CEEEEEec
Confidence            9999988887765    3433  2222221       1122347999987544332   245566788997 98887543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.09  E-value=0.0028  Score=56.04  Aligned_cols=101  Identities=17%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCe-E--EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE-F--VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+.+++++++.+.+. +++... .  .|..+...... +....  -+++|+
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   85 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDL   85 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            5788999987 9999999999999999 8999999888766543 444332 2  23333111111 11111  136999


Q ss_pred             EEEccCCh----------H---------------HHHHHHHHhccCCceEEEeccC
Q 016660          273 CFECVGLA----------S---------------LVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       273 vid~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +++++|..          +               ..+.++..++++ |+++.++..
T Consensus        86 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~  140 (255)
T 4eso_A           86 LHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREG-GSIVFTSSV  140 (255)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCG
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CEEEEECCh
Confidence            99998742          1               123344556675 899988754

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.08  E-value=0.0037  Score=57.87  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=83.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHH-H-cCCCEEEEEcCCchHHHH-HHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccC
Q 016660          203 STVVIFGLGSIGLAVAEGAR-L-CGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG  278 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~-~-~G~~~vi~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g  278 (385)
                      -+|.|+|+|.+|...++.++ . .+++.+.+.++++++.+. ++++|+..+++  +      ..++... .+|+|+.|++
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~--~------~~~~l~~~~~D~V~i~tp   80 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT--N------YKDMIDTENIDAIFIVAP   80 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES--C------HHHHHTTSCCSEEEECSC
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC--C------HHHHhcCCCCCEEEEeCC
Confidence            47899999999998888776 4 467334566778777654 55678754442  2      3344444 7999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCCCCCcccccHH---HH---h-hc-CcEEEEeeecCCCCCCcHHHHHHHHHcCCCC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF---EV---L-HS-GKILMGSLFGGLKAKSDIPILLKRYMDKELE  350 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~---~~---~-~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~  350 (385)
                      .....+.+..+++.  |+-|++...     +..+..   .+   . .+ ++.+.-..  ...+...+..+.+++++|.+-
T Consensus        81 ~~~h~~~~~~al~~--G~~v~~eKp-----~~~~~~~~~~l~~~a~~~~~~~~~~~~--~~r~~p~~~~~~~~i~~g~iG  151 (346)
T 3cea_A           81 TPFHPEMTIYAMNA--GLNVFCEKP-----LGLDFNEVDEMAKVIKSHPNQIFQSGF--MRRYDDSYRYAKKIVDNGDIG  151 (346)
T ss_dssp             GGGHHHHHHHHHHT--TCEEEECSC-----CCSCHHHHHHHHHHHHTCTTSCEECCC--GGGTCHHHHHHHHHHHTTTTC
T ss_pred             hHhHHHHHHHHHHC--CCEEEEcCC-----CCCCHHHHHHHHHHHHhCCCCeEEEec--ccccCHHHHHHHHHHHcCCCC
Confidence            88778888888888  455555321     222221   12   1 23 44443221  122234688888999988653

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.08  E-value=0.0055  Score=52.63  Aligned_cols=99  Identities=8%  Similarity=0.026  Sum_probs=63.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHH-HcCCCEEEEEcCCch-HHHHHHHcCCC-eEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          203 STVVIFGL-GSIGLAVAEGAR-LCGATRIIGVDVISE-KFEIGKRFGVT-EFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~-~~G~~~vi~~~~~~~-~~~~~~~lg~~-~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      .+|||+|+ |.+|...++.+. ..|+ +|++++++++ +.+.+...+.. .++. -+......+.+... ++|+||+++|
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~D~~d~~~~~~~~~-~~d~vv~~ag   82 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIE-GSFQNPGXLEQAVT-NAEVVFVGAM   82 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEE-CCTTCHHHHHHHHT-TCSEEEESCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEE-CCCCCHHHHHHHHc-CCCEEEEcCC
Confidence            46999997 999999888887 8999 8999999887 66554322322 2222 22222333444443 6899999998


Q ss_pred             ChHH-HHHHHHHhccC-CceEEEeccCC
Q 016660          279 LASL-VQEAYACCRKG-WGKTIVLGVDQ  304 (385)
Q Consensus       279 ~~~~-~~~~~~~l~~~-~G~~v~~g~~~  304 (385)
                      .... .+.+++.++.. .+++|.++...
T Consensus        83 ~~n~~~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           83 ESGSDMASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             CCChhHHHHHHHHHhcCCCeEEEEeece
Confidence            7321 34455555432 25888887643

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.07  E-value=0.0056  Score=54.20  Aligned_cols=78  Identities=21%  Similarity=0.270  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH-HHHH-HHc----CCCeEEeCCCCCchhHHHHhh------C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEIG-KRF----GVTEFVNSKNCGDKSIIIDMT------D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~~~-~~l----g~~~vv~~~~~~~~~~i~~~~------~  267 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++ .+.+ +++    +....+-.-+......+..+.      -
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            4678999987 9999999999999999 89999888776 4432 222    543222222222222222221      1


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|+++|.
T Consensus        82 g~iD~lv~~Ag~   93 (260)
T 1x1t_A           82 GRIDILVNNAGI   93 (260)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            369999999874

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.07  E-value=0.0055  Score=54.07  Aligned_cols=77  Identities=25%  Similarity=0.310  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH---HHcCCCeEEeCCCCCchhHHHHhhC------CCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG---KRFGVTEFVNSKNCGDKSIIIDMTD------GGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~---~~lg~~~vv~~~~~~~~~~i~~~~~------g~~  270 (385)
                      .+.++||.|+ |++|...++.+...|+ +|++++++++ .+..   ++.+....+-.-+......+.+...      +++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~-~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP-APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGV   80 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC-HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch-HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999987 9999999999988999 8999888765 2222   3334432221222222222222211      369


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|+++|.
T Consensus        81 d~lv~~Ag~   89 (255)
T 2q2v_A           81 DILVNNAGI   89 (255)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.05  E-value=0.005  Score=52.23  Aligned_cols=103  Identities=14%  Similarity=0.122  Sum_probs=71.8

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCe--EEeCCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~--vv~~~~~~~~~~i~~~~  266 (385)
                      +.....+.++++||-+|+|. |..++.+++.....+|++++.+++..+.+++    .|.+.  ++..+-...   +.  .
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~--~  105 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG---LD--D  105 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT---CT--T
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh---hh--c
Confidence            34556788999999999985 8888999988644499999999998887764    34432  222221011   00  1


Q ss_pred             CCCccEEEEccC---ChHHHHHHHHHhccCCceEEEecc
Q 016660          267 DGGADYCFECVG---LASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       267 ~g~~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .+.+|+|+....   ....++.+.+.|+++ |+++....
T Consensus       106 ~~~~D~i~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  143 (204)
T 3e05_A          106 LPDPDRVFIGGSGGMLEEIIDAVDRRLKSE-GVIVLNAV  143 (204)
T ss_dssp             SCCCSEEEESCCTTCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHhcCCC-eEEEEEec
Confidence            136999997665   245578899999997 99988753

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.03  E-value=0.0089  Score=52.95  Aligned_cols=78  Identities=24%  Similarity=0.275  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCe-E--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.    +.|... +  .|..+...... +....  -++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   84 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            4678999987 9999999999999999 8999988877655432    224332 2  23333111111 11111  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        85 id~lv~nAg~   94 (262)
T 1zem_A           85 IDFLFNNAGY   94 (262)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.02  E-value=0.0029  Score=55.49  Aligned_cols=101  Identities=15%  Similarity=0.171  Sum_probs=66.2

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eEEeCCCCCchhHHHHhhC--CCccEEE
Q 016660          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSIIIDMTD--GGADYCF  274 (385)
Q Consensus       199 ~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vv~~~~~~~~~~i~~~~~--g~~d~vi  274 (385)
                      +-+|+++||.|+ +++|.+.++.+...|+ +|+++++++++.+....-.+. ...|..+   .+.+.+...  |+.|+++
T Consensus         8 lf~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~g~iDiLV   83 (242)
T 4b79_A            8 IYAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAPRHPRIRREELDITD---SQRLQRLFEALPRLDVLV   83 (242)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSCCCTTEEEEECCTTC---HHHHHHHHHHCSCCSEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhhhcCCeEEEEecCCC---HHHHHHHHHhcCCCCEEE
Confidence            347999999987 9999999999999999 899999887765432211111 1223333   223333322  3799999


Q ss_pred             EccCCh-----------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          275 ECVGLA-----------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       275 d~~g~~-----------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +++|..                       ...+.++..+++++|++|.++..
T Consensus        84 NNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~  135 (242)
T 4b79_A           84 NNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASM  135 (242)
T ss_dssp             ECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCG
T ss_pred             ECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence            998842                       11234556665434999988754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.01  E-value=0.01  Score=46.71  Aligned_cols=76  Identities=17%  Similarity=0.244  Sum_probs=53.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      .+|+|+|+|.+|...++.+...|. +|+++++++++.+.+.+ ++... +..+. .....+....-.++|+||.+++...
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~-~~~d~-~~~~~l~~~~~~~~d~vi~~~~~~~   81 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALV-INGDC-TKIKTLEDAGIEDADMYIAVTGKEE   81 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEE-EESCT-TSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcEE-EEcCC-CCHHHHHHcCcccCCEEEEeeCCch
Confidence            479999999999999999998998 89999998888776653 56542 22211 1222222221237999999998875

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.99  E-value=0.01  Score=52.34  Aligned_cols=74  Identities=18%  Similarity=0.166  Sum_probs=49.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCe-EE--eCCCCCchhHHHHhh------C
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-FV--NSKNCGDKSIIIDMT------D  267 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~-vv--~~~~~~~~~~i~~~~------~  267 (385)
                      +.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+... .+  |..+   ...+.++.      -
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~~~   77 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD---RDQVFAAVEQARKTL   77 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS---HHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC---HHHHHHHHHHHHHHh
Confidence            467999987 9999999999999999 8999988877655332    234332 22  3333   22222211      2


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|+++|.
T Consensus        78 g~id~lv~nAg~   89 (256)
T 1geg_A           78 GGFDVIVNNAGV   89 (256)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999873

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.99  E-value=0.0088  Score=53.97  Aligned_cols=100  Identities=20%  Similarity=0.155  Sum_probs=62.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH-HH----HHHHcCCCeEEeCCCCCchhHHH----Hhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FE----IGKRFGVTEFVNSKNCGDKSIII----DMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~----~~~~lg~~~vv~~~~~~~~~~i~----~~~--~g  268 (385)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++ .+    .+++.|....+-.-+......+.    +..  -+
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  124 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLG  124 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5789999987 9999999999999999 88888877653 22    22334544322222222222222    211  13


Q ss_pred             CccEEEEccCCh--------------------------HHHHHHHHHhccCCceEEEecc
Q 016660          269 GADYCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       269 ~~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ++|++|+++|..                          ...+.++..++++ |++|.++.
T Consensus       125 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~iv~isS  183 (291)
T 3ijr_A          125 SLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQG-DVIINTAS  183 (291)
T ss_dssp             SCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTT-CEEEEECC
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CEEEEEec
Confidence            699999987731                          1123445566676 89998875

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.99  E-value=0.0037  Score=55.09  Aligned_cols=103  Identities=13%  Similarity=0.050  Sum_probs=72.7

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHHc-----CCCeE-EeCCCCCchhHHHHh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF-----GVTEF-VNSKNCGDKSIIIDM  265 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~l-----g~~~v-v~~~~~~~~~~i~~~  265 (385)
                      +.....+.++++||-+|+|. |..+..+++..| ..+|++++.+++..+.+++.     |.+.+ +...+  ....  .+
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d--~~~~--~~  162 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGK--LEEA--EL  162 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESC--GGGC--CC
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECc--hhhc--CC
Confidence            34556788999999999986 889999999853 23999999999988877754     63322 11111  1110  11


Q ss_pred             hCCCccEEEEccCCh-HHHHHHHHHhccCCceEEEec
Q 016660          266 TDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       266 ~~g~~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ..+.+|+|+...+.. ..++.+.+.|+++ |+++.+.
T Consensus       163 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  198 (258)
T 2pwy_A          163 EEAAYDGVALDLMEPWKVLEKAALALKPD-RFLVAYL  198 (258)
T ss_dssp             CTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred             CCCCcCEEEECCcCHHHHHHHHHHhCCCC-CEEEEEe
Confidence            223799998766655 6688999999997 9988775

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.98  E-value=0.0015  Score=56.81  Aligned_cols=102  Identities=12%  Similarity=0.136  Sum_probs=69.0

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-eE-EeCCCCCchhHHHHhh-CC
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF-VNSKNCGDKSIIIDMT-DG  268 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~v-v~~~~~~~~~~i~~~~-~g  268 (385)
                      .....++.+||-+|+| .|..++.+++.....+|++++.+++..+.+++    .|.. .+ +...+  ....+.... .+
T Consensus        49 ~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~~  125 (233)
T 2gpy_A           49 LLKMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGD--ALQLGEKLELYP  125 (233)
T ss_dssp             HHHHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC--GGGSHHHHTTSC
T ss_pred             HHhccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC--HHHHHHhcccCC
Confidence            3445678899999988 58888999998732399999999998887765    3542 12 11112  222122222 34


Q ss_pred             CccEEEEccCC---hHHHHHHHHHhccCCceEEEec
Q 016660          269 GADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       269 ~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .||+|+.....   ...++.+.+.|+++ |.++...
T Consensus       126 ~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  160 (233)
T 2gpy_A          126 LFDVLFIDAAKGQYRRFFDMYSPMVRPG-GLILSDN  160 (233)
T ss_dssp             CEEEEEEEGGGSCHHHHHHHHGGGEEEE-EEEEEET
T ss_pred             CccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence            79999866553   35578889999997 9888753

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.98  E-value=0.0072  Score=54.04  Aligned_cols=78  Identities=23%  Similarity=0.297  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCC-Ce--E--EeCCCCCchhH-HHHhh--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV-TE--F--VNSKNCGDKSI-IIDMT--D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~-~~--v--v~~~~~~~~~~-i~~~~--~  267 (385)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    +.|. ..  +  .|..+...... +....  -
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            4678999987 9999999999988999 8999988877655432    2332 11  2  23332111111 11111  1


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|+++|.
T Consensus       110 g~iD~vi~~Ag~  121 (279)
T 1xg5_A          110 SGVDICINNAGL  121 (279)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            369999999883

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.95  E-value=0.0052  Score=53.99  Aligned_cols=78  Identities=22%  Similarity=0.292  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeEEeCCCCCchhHHHHhh------CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSIIIDMT------DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vv~~~~~~~~~~i~~~~------~g~~d~  272 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+ ++++.....-.-+......+.++.      -+++|+
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   83 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDI   83 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            5788999987 9999999999999999 899999988776643 445544322222222222222221      136999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        84 lv~nAg~   90 (247)
T 3rwb_A           84 LVNNASI   90 (247)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.93  E-value=0.0021  Score=54.99  Aligned_cols=102  Identities=18%  Similarity=0.248  Sum_probs=71.8

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcC--CCEEEEEcCCchHHHHHHH----cCCCeE-EeCCCCCchhHHHHh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKR----FGVTEF-VNSKNCGDKSIIIDM  265 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G--~~~vi~~~~~~~~~~~~~~----lg~~~v-v~~~~~~~~~~i~~~  265 (385)
                      +.....+.++++||.+|+|. |..+..+++..|  . +|++++.+++..+.+++    .|...+ +...+  ..   ..+
T Consensus        69 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d--~~---~~~  141 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTGC-GYHAAVTAEIVGEDG-LVVSIERIPELAEKAERTLRKLGYDNVIVIVGD--GT---LGY  141 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC--GG---GCC
T ss_pred             HHHhhCCCCCCEEEEECCCc-cHHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC--cc---cCC
Confidence            34556788999999999984 889999999876  5 89999999988887765    343322 11111  11   111


Q ss_pred             h-CCCccEEEEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          266 T-DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       266 ~-~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      . .+.||+|+.........+.+.+.|+++ |++++.-.
T Consensus       142 ~~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~lv~~~~  178 (215)
T 2yxe_A          142 EPLAPYDRIYTTAAGPKIPEPLIRQLKDG-GKLLMPVG  178 (215)
T ss_dssp             GGGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred             CCCCCeeEEEECCchHHHHHHHHHHcCCC-cEEEEEEC
Confidence            1 237999998877666557889999997 98876643

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.92  E-value=0.0083  Score=52.85  Aligned_cols=78  Identities=14%  Similarity=0.142  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeEEeCCCCCchhHHH----Hhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSIII----DMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vv~~~~~~~~~~i~----~~~--~g~~d~  272 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+ ++++....+-.-+......+.    ...  -+.+|+
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   83 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4678999987 9999999999988999 899999888776543 344543222112212222222    111  136899


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        84 lv~~Ag~   90 (253)
T 1hxh_A           84 LVNNAGI   90 (253)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.92  E-value=0.00097  Score=58.22  Aligned_cols=101  Identities=22%  Similarity=0.258  Sum_probs=71.2

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeE-EeCCCCCchhHHHHhhC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF-VNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~v-v~~~~~~~~~~i~~~~~  267 (385)
                      +.....+.++++||.+|+| .|..++.+++..+ .+|++++.+++..+.+++    .|...+ +...+  ..   ..+..
T Consensus        83 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d--~~---~~~~~  155 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVGTG-SGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGD--GS---KGFPP  155 (235)
T ss_dssp             HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC--GG---GCCGG
T ss_pred             HHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECC--cc---cCCCC
Confidence            3455578899999999998 6899999999887 489999999988877765    454332 11111  10   11222


Q ss_pred             C-CccEEEEccCChHHHHHHHHHhccCCceEEEec
Q 016660          268 G-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       268 g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      + +||+|+...........+.+.|+++ |+++..-
T Consensus       156 ~~~fD~Ii~~~~~~~~~~~~~~~L~pg-G~lvi~~  189 (235)
T 1jg1_A          156 KAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIPV  189 (235)
T ss_dssp             GCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             CCCccEEEECCcHHHHHHHHHHhcCCC-cEEEEEE
Confidence            3 5999998777665567889999997 9887654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.90  E-value=0.0075  Score=53.86  Aligned_cols=79  Identities=15%  Similarity=0.121  Sum_probs=51.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCC-eEE--eCCCCCchhH-HHHhh--CCCcc
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFV--NSKNCGDKSI-IIDMT--DGGAD  271 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~vv--~~~~~~~~~~-i~~~~--~g~~d  271 (385)
                      ..+.++||.|+ |++|...++.+...|+ +|++++++.++.+.+ ++++.. ..+  |..+...... +....  -+++|
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  104 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVD  104 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            35678999987 9999999999999999 899999888776543 445532 222  3333111111 22111  13799


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++|+++|.
T Consensus       105 ~lVnnAg~  112 (272)
T 4dyv_A          105 VLFNNAGT  112 (272)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999884

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.90  E-value=0.0062  Score=53.14  Aligned_cols=77  Identities=18%  Similarity=0.200  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEEeCCCCCchhHHHHhhCC--CccEEEEc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSIIIDMTDG--GADYCFEC  276 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv~~~~~~~~~~i~~~~~g--~~d~vid~  276 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. ++....++.. +......+.+....  ++|++|++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~~~~~~~~id~vi~~   83 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCV-DLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEEC-CTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEE-eCCCHHHHHHHHHHcCCCCEEEEC
Confidence            4678999997 9999999999999999 8999988887766443 3322233322 22233334444433  68999999


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      +|.
T Consensus        84 Ag~   86 (244)
T 3d3w_A           84 AAV   86 (244)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            884

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.89  E-value=0.0053  Score=52.74  Aligned_cols=92  Identities=13%  Similarity=0.122  Sum_probs=62.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEccCCh-
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFECVGLA-  280 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~~g~~-  280 (385)
                      +|||+|+ |.+|...++.+...|+ +|+++++++++.+.+...++..+ .|..+...     +.. +++|+||+++|.. 
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~-----~~~-~~~d~vi~~ag~~~   74 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVATLVKEPLVLTE-----ADL-DSVDAVVDALSVPW   74 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEEEECCGGGCCH-----HHH-TTCSEEEECCCCCT
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceEEecccccccH-----hhc-ccCCEEEECCccCC
Confidence            5899997 9999999999999999 89999999888766544444322 23333111     111 3699999999872 


Q ss_pred             ---------HHHHHHHHHhccCCceEEEecc
Q 016660          281 ---------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       281 ---------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                               .....+++.++..+++++.++.
T Consensus        75 ~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           75 GSGRGYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             TSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             CcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence                     2234555555553368888853

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.89  E-value=0.0047  Score=53.75  Aligned_cols=102  Identities=18%  Similarity=0.199  Sum_probs=69.0

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHHcCCC--eE--EeCCCCCchhHHHHhhCCC
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVT--EF--VNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~lg~~--~v--v~~~~~~~~~~i~~~~~g~  269 (385)
                      +...+++|++||=+|+|. |..+..+|+..|.+ +|++++.+++..+.+++.-.+  .+  +..+. .... ......+.
T Consensus        71 ~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~-~~p~-~~~~~~~~  147 (233)
T 4df3_A           71 IELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDA-RFPE-KYRHLVEG  147 (233)
T ss_dssp             SCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCT-TCGG-GGTTTCCC
T ss_pred             hhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEec-cCcc-ccccccce
Confidence            456799999999999877 88899999988753 899999999988877653221  11  21111 1111 11122236


Q ss_pred             ccEEEEccCCh----HHHHHHHHHhccCCceEEEe
Q 016660          270 ADYCFECVGLA----SLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       270 ~d~vid~~g~~----~~~~~~~~~l~~~~G~~v~~  300 (385)
                      +|+||.....+    ..+.++.+.|+++ |+++..
T Consensus       148 vDvVf~d~~~~~~~~~~l~~~~r~LKpG-G~lvI~  181 (233)
T 4df3_A          148 VDGLYADVAQPEQAAIVVRNARFFLRDG-GYMLMA  181 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEEEEeccCChhHHHHHHHHHHhccCC-CEEEEE
Confidence            89888655543    3467788899997 998765

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.88  E-value=0.01  Score=53.13  Aligned_cols=100  Identities=21%  Similarity=0.253  Sum_probs=61.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC------------chHHHH----HHHcCCCeEEeCCCCCchhHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI------------SEKFEI----GKRFGVTEFVNSKNCGDKSIII  263 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~------------~~~~~~----~~~lg~~~vv~~~~~~~~~~i~  263 (385)
                      .+.++||+|+ |++|...++.+...|+ +|++++++            .++.+.    ++..+....+-.-+......+.
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   87 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS   87 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence            5788999987 9999999999999999 89888776            333332    2334443222112212222222


Q ss_pred             H----hhC--CCccEEEEccCCh--------H---------------HHHHHHHHhccCCceEEEecc
Q 016660          264 D----MTD--GGADYCFECVGLA--------S---------------LVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       264 ~----~~~--g~~d~vid~~g~~--------~---------------~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +    ...  +++|++|+++|..        +               ..+.++..+.++ |+++.++.
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS  154 (287)
T 3pxx_A           88 RELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSG-ASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECC
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcC-cEEEEecc
Confidence            2    111  3799999998841        1               123344455665 89998875

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.88  E-value=0.0042  Score=56.75  Aligned_cols=101  Identities=13%  Similarity=0.175  Sum_probs=71.5

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc----CCCe-E-EeCCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTE-F-VNSKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~~-v-v~~~~~~~~~~i~~~~  266 (385)
                      +.....+.++.+||-+|+|. |..+..+++..|+ +|++++.+++..+.+++.    |... + +...+  .    ..+ 
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~----~~~-  152 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG--W----EDF-  152 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC--G----GGC-
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC--h----HHC-
Confidence            34556778999999999877 8888899987788 999999999988877753    4321 1 11111  1    122 


Q ss_pred             CCCccEEEEc-----cCC---hHHHHHHHHHhccCCceEEEeccC
Q 016660          267 DGGADYCFEC-----VGL---ASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       267 ~g~~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ++.||+|+..     .+.   ...++.+.+.|+++ |++++....
T Consensus       153 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  196 (318)
T 2fk8_A          153 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQSSV  196 (318)
T ss_dssp             CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEEEE
T ss_pred             CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC-cEEEEEEec
Confidence            2579999876     332   34578889999997 998876543

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.88  E-value=0.0026  Score=58.91  Aligned_cols=97  Identities=20%  Similarity=0.233  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC-----CCc------hhHHH-HhhC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN-----CGD------KSIII-DMTD  267 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~-----~~~------~~~i~-~~~~  267 (385)
                      -+|.+|.|.|.|.+|+.+++.++.+|+ +|++.+.++++.+..+++|++.+ +..+     .+.      ...+. +...
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~  250 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVAR  250 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHh
Confidence            578999999999999999999999999 89999888777667777776433 1111     000      00000 0001


Q ss_pred             C-CccEEEEccCChHHHHHHHHHhccCCceEEE
Q 016660          268 G-GADYCFECVGLASLVQEAYACCRKGWGKTIV  299 (385)
Q Consensus       268 g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~  299 (385)
                      . +.++|+++++.+.+.+++.+.|..+ |.++.
T Consensus       251 ~lk~~iVie~AN~p~t~~eA~~~L~~~-gIlv~  282 (355)
T 1c1d_A          251 TLDCSVVAGAANNVIADEAASDILHAR-GILYA  282 (355)
T ss_dssp             HCCCSEECCSCTTCBCSHHHHHHHHHT-TCEEC
T ss_pred             hCCCCEEEECCCCCCCCHHHHHHHHhC-CEEEE
Confidence            1 4567777776665334556666665 65553

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.88  E-value=0.019  Score=51.20  Aligned_cols=100  Identities=24%  Similarity=0.294  Sum_probs=62.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHHH----HHHcCCCeEEeCCCCCchhH----HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI----GKRFGVTEFVNSKNCGDKSI----IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~----~~~lg~~~vv~~~~~~~~~~----i~~~~--~g  268 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+++++ +.++.+.    +++.|....+-.-+......    +.+..  -|
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5788999987 9999999999999999 7777744 3344332    23345443222222222222    22221  13


Q ss_pred             CccEEEEccCCh-------------------------HHHHHHHHHhccCCceEEEecc
Q 016660          269 GADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       269 ~~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ++|++|+++|..                         ...+.+...++++ |++|.++.
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-g~iv~isS  166 (271)
T 3v2g_A          109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG-GRIITIGS  166 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence            699999998741                         1234456667776 99998865

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.87  E-value=0.0023  Score=54.55  Aligned_cols=101  Identities=15%  Similarity=0.078  Sum_probs=70.1

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeE-EeCCCCCchhHHHHhhC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF-VNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~v-v~~~~~~~~~~i~~~~~  267 (385)
                      +.....+.++++||-+|+|. |..+..+++. +. +|++++.+++..+.+++    .|...+ +...+  .....  ...
T Consensus        69 ~~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~~--~~~  141 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTGS-GYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGD--GWQGW--QAR  141 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC--GGGCC--GGG
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEECC--cccCC--ccC
Confidence            44556788999999999874 8888888888 65 99999999998887764    344322 11111  11100  112


Q ss_pred             CCccEEEEccCChHHHHHHHHHhccCCceEEEec
Q 016660          268 GGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       268 g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +.||+|+...........+.+.|+++ |+++..-
T Consensus       142 ~~~D~i~~~~~~~~~~~~~~~~L~pg-G~lv~~~  174 (210)
T 3lbf_A          142 APFDAIIVTAAPPEIPTALMTQLDEG-GILVLPV  174 (210)
T ss_dssp             CCEEEEEESSBCSSCCTHHHHTEEEE-EEEEEEE
T ss_pred             CCccEEEEccchhhhhHHHHHhcccC-cEEEEEE
Confidence            47999998766655456789999997 9887654

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.85  E-value=0.0092  Score=52.81  Aligned_cols=78  Identities=18%  Similarity=0.175  Sum_probs=48.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCCchHHHH----HHHcCCCeEEeCCCCCchhHHHH----hhC--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEI----GKRFGVTEFVNSKNCGDKSIIID----MTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~----~~~lg~~~vv~~~~~~~~~~i~~----~~~--g  268 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++ .+++++.+.    +++.+....+-.-+......+.+    ...  +
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG   85 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5788999987 9999999999999999 77777 555554443    23345432221122122222222    111  3


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        86 ~id~lv~nAg~   96 (259)
T 3edm_A           86 EIHGLVHVAGG   96 (259)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            69999998873

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=96.85  E-value=0.0065  Score=53.85  Aligned_cols=75  Identities=16%  Similarity=0.181  Sum_probs=48.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH-cCCCEEEEEcCCchHHHHH----HHcCCC-eEE--eCCCCCchhHHHHhh-----
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSIIIDMT-----  266 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~----~~lg~~-~vv--~~~~~~~~~~i~~~~-----  266 (385)
                      ++.++||.|+ |++|...++.+.. .|+ +|++++++.++.+.+    +..+.. .++  |..+   ...+..+.     
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~---~~~~~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD---LQSIRALRDFLRK   78 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCC---HHHHHHHHHHHHH
Confidence            4678999987 9999998888877 899 899998887665432    222432 222  3332   22222211     


Q ss_pred             -CCCccEEEEccCC
Q 016660          267 -DGGADYCFECVGL  279 (385)
Q Consensus       267 -~g~~d~vid~~g~  279 (385)
                       .+++|++|+++|.
T Consensus        79 ~~g~id~li~~Ag~   92 (276)
T 1wma_A           79 EYGGLDVLVNNAGI   92 (276)
T ss_dssp             HHSSEEEEEECCCC
T ss_pred             hcCCCCEEEECCcc
Confidence             1369999999874

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.84  E-value=0.0082  Score=52.11  Aligned_cols=77  Identities=21%  Similarity=0.222  Sum_probs=51.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-----HcCCCeEEeCCCCCchhHHHHhhC------CC
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-----RFGVTEFVNSKNCGDKSIIIDMTD------GG  269 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-----~lg~~~vv~~~~~~~~~~i~~~~~------g~  269 (385)
                      +.++||.|+ |++|...++.+...|+ +|+.++++.++.+.+.     ..+....+-.-+......+.++..      ++
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            578999987 9999999999999999 8999999887765432     334432222222222232333322      36


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        81 id~li~~Ag~   90 (235)
T 3l77_A           81 VDVVVANAGL   90 (235)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999884

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.83  E-value=0.0076  Score=52.95  Aligned_cols=75  Identities=23%  Similarity=0.232  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc-hHHH-HHHHcCCCe-E--EeCCCCCchhHHHHh----h--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE-IGKRFGVTE-F--VNSKNCGDKSIIIDM----T--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~-~~~~lg~~~-v--v~~~~~~~~~~i~~~----~--~g  268 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++ ++.+ .+++.+... .  .|..+   ...+..+    .  -+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ---PGDVEAFGKQVISTFG   81 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC---HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCCcEEEEEeecCC---HHHHHHHHHHHHHHcC
Confidence            4678999987 9999999999999999 899988887 6554 344556432 2  23333   2222222    1  14


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        82 ~id~lv~nAg~   92 (249)
T 2ew8_A           82 RCDILVNNAGI   92 (249)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.82  E-value=0.014  Score=51.90  Aligned_cols=103  Identities=20%  Similarity=0.261  Sum_probs=63.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHH----HHHHcCCCeEEeCCCCCchhHHHH----hhC--
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFE----IGKRFGVTEFVNSKNCGDKSIIID----MTD--  267 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~----~~~~lg~~~vv~~~~~~~~~~i~~----~~~--  267 (385)
                      -.+.++||.|+ +++|...++.+...|+ +|+++++ +.++.+    .+++.|....+-.-+......+.+    ...  
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   94 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF   94 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35788999987 9999999999999999 7777654 344333    233445443222222222222222    111  


Q ss_pred             CCccEEEEccCCh-------------------------HHHHHHHHHhccCCceEEEeccCC
Q 016660          268 GGADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       268 g~~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      +++|++|+++|..                         ...+.++..+.++ |++|.++...
T Consensus        95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~  155 (270)
T 3is3_A           95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG-GRIVLTSSNT  155 (270)
T ss_dssp             SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCTT
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CeEEEEeCch
Confidence            3699999998841                         1234566677776 9999987643

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.82  E-value=0.0049  Score=54.06  Aligned_cols=81  Identities=20%  Similarity=0.153  Sum_probs=56.0

Q ss_pred             cCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEEeCCCCCchhHHHHhhC--CCccEE
Q 016660          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSIIIDMTD--GGADYC  273 (385)
Q Consensus       198 ~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv~~~~~~~~~~i~~~~~--g~~d~v  273 (385)
                      ...++.+|||.|+ |++|...++.+...|+ +|+++++++++.+.+. ++.....+..-+......+.++..  +++|++
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~l   88 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDIL   88 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEE
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence            3457889999987 9999999999989999 8999999888766543 444333333333233333444333  369999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      |+++|.
T Consensus        89 i~~Ag~   94 (249)
T 3f9i_A           89 VCNAGI   94 (249)
T ss_dssp             EECCC-
T ss_pred             EECCCC
Confidence            999884

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.82  E-value=0.01  Score=53.67  Aligned_cols=102  Identities=17%  Similarity=0.198  Sum_probs=63.9

Q ss_pred             CCCCEEEEEcC-CH--HHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeEE--eCCCCCchhH-HHHhh--C
Q 016660          200 EVGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFV--NSKNCGDKSI-IIDMT--D  267 (385)
Q Consensus       200 ~~~~~VlI~G~-g~--vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vv--~~~~~~~~~~-i~~~~--~  267 (385)
                      -.+.++||.|+ |.  +|...++.+...|+ +|++++++++..+.++    +.+....+  |..+...... +....  -
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            46789999986 66  99999999989999 8988888765443333    33432222  3333111111 11111  2


Q ss_pred             CCccEEEEccCChH-----------------------------HHHHHHHHhccCCceEEEeccC
Q 016660          268 GGADYCFECVGLAS-----------------------------LVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       268 g~~d~vid~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +++|++|+++|...                             ..+.++..++++ |++|.++..
T Consensus       108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~Iv~isS~  171 (293)
T 3grk_A          108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG-GSILTLTYY  171 (293)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC-EEEEEEECG
T ss_pred             CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CEEEEEeeh
Confidence            47999999988421                             133455666776 999988754

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.81  E-value=0.0085  Score=53.14  Aligned_cols=78  Identities=14%  Similarity=0.132  Sum_probs=47.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH---HHH-H---HHcCCCeEEeCCCCCchhHHHHhh------
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK---FEI-G---KRFGVTEFVNSKNCGDKSIIIDMT------  266 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~---~~~-~---~~lg~~~vv~~~~~~~~~~i~~~~------  266 (385)
                      .+.++||.|+ +++|...++.+...|+ +|+++.++...   .+. .   ++.|....+-.-+......+.++.      
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   88 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE   88 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5788999987 9999999999999999 88887655433   222 1   223433222112222222222221      


Q ss_pred             CCCccEEEEccCC
Q 016660          267 DGGADYCFECVGL  279 (385)
Q Consensus       267 ~g~~d~vid~~g~  279 (385)
                      -+++|++|+++|.
T Consensus        89 ~g~iD~lvnnAg~  101 (262)
T 3ksu_A           89 FGKVDIAINTVGK  101 (262)
T ss_dssp             HCSEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1479999999983

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.80  E-value=0.014  Score=49.81  Aligned_cols=92  Identities=13%  Similarity=0.173  Sum_probs=62.6

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEccCCh-
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFECVGLA-  280 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~~g~~-  280 (385)
                      +|||+|+ |.+|...++.+...|+ +|+++++++++.+.+. .++..+ .|..+...    ..+  +++|+||+++|.. 
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~----~~~--~~~d~vi~~ag~~~   73 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDINILQKDIFDLTL----SDL--SDQNVVVDAYGISP   73 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSEEEECCGGGCCH----HHH--TTCSEEEECCCSST
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCeEEeccccChhh----hhh--cCCCEEEECCcCCc
Confidence            5899997 9999999999999998 8999999988876654 333322 23333111    122  3699999999864 


Q ss_pred             -------HHHHHHHHHhccC-CceEEEeccC
Q 016660          281 -------SLVQEAYACCRKG-WGKTIVLGVD  303 (385)
Q Consensus       281 -------~~~~~~~~~l~~~-~G~~v~~g~~  303 (385)
                             .....+++.++.. .++++.++..
T Consensus        74 ~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           74 DEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             TTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             cccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence                   2234566666553 2688887653

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.80  E-value=0.0081  Score=52.95  Aligned_cols=91  Identities=20%  Similarity=0.292  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc-------------------hHHHHHH----HcCCC-eEEeCCCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-------------------EKFEIGK----RFGVT-EFVNSKNC  256 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~-------------------~~~~~~~----~lg~~-~vv~~~~~  256 (385)
                      .+.+|+|+|+|++|..+++.+...|+.+++.++.+.                   .|.+.+.    ++... .+......
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  109 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  109 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            357899999999999999999999998999998876                   5555432    23222 22211211


Q ss_pred             CchhHHHHhhCCCccEEEEccCChHHHHHHHHHhcc
Q 016660          257 GDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRK  292 (385)
Q Consensus       257 ~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~  292 (385)
                      .....+.++.. ++|+|||+++...+...+.+....
T Consensus       110 ~~~~~~~~~~~-~~DvVi~~~d~~~~~~~l~~~~~~  144 (249)
T 1jw9_B          110 LDDAELAALIA-EHDLVLDCTDNVAVRNQLNAGCFA  144 (249)
T ss_dssp             CCHHHHHHHHH-TSSEEEECCSSHHHHHHHHHHHHH
T ss_pred             CCHhHHHHHHh-CCCEEEEeCCCHHHHHHHHHHHHH
Confidence            11122333322 699999999987754444444444

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.80  E-value=0.014  Score=52.77  Aligned_cols=101  Identities=21%  Similarity=0.156  Sum_probs=63.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch--HHH----HHHHcCCCeEEeCCCCCchhHHHHhh------C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFE----IGKRFGVTEFVNSKNCGDKSIIIDMT------D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~--~~~----~~~~lg~~~vv~~~~~~~~~~i~~~~------~  267 (385)
                      ++.++||.|+ |++|...++.+...|+ +|++++++.+  +.+    .+++.|....+-.-+......+.++.      -
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5789999987 9999999999999999 8888876522  222    23344544332222222222222221      1


Q ss_pred             CCccEEEEccCCh--------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          268 GGADYCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       268 g~~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +++|++|++.|..                          ...+.++..++++ |++|.++..
T Consensus       127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~Iv~isS~  187 (294)
T 3r3s_A          127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKG-ASIITTSSI  187 (294)
T ss_dssp             TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCG
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC-CEEEEECCh
Confidence            4799999998841                          1123445566676 899988754

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.80  E-value=0.0072  Score=53.52  Aligned_cols=75  Identities=31%  Similarity=0.362  Sum_probs=50.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc----CCCe-E--EeCCCCCchhHHHHhh-----
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVTE-F--VNSKNCGDKSIIIDMT-----  266 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l----g~~~-v--v~~~~~~~~~~i~~~~-----  266 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. ++    +... .  .|..+   ...+.+..     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~   81 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT---PEGVDAVVESVRS   81 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS---HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCC---HHHHHHHHHHHHH
Confidence            4678999987 9999999999999999 8999988877655432 22    5432 2  23333   22222211     


Q ss_pred             -CCCccEEEEccCC
Q 016660          267 -DGGADYCFECVGL  279 (385)
Q Consensus       267 -~g~~d~vid~~g~  279 (385)
                       -+++|++|+++|.
T Consensus        82 ~~g~id~lv~~Ag~   95 (263)
T 3ai3_A           82 SFGGADILVNNAGT   95 (263)
T ss_dssp             HHSSCSEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence             1369999999874

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.78  E-value=0.0056  Score=53.99  Aligned_cols=78  Identities=17%  Similarity=0.132  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHHHhhC-----CCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIIIDMTD-----GGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~~~~-----g~~  270 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.    +.|....+-.-+......+..+..     +++
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~i   84 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPL   84 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCc
Confidence            4678999987 9999999999999999 8999999887755432    234432221112122222222111     579


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|+++|.
T Consensus        85 d~lv~nAg~   93 (252)
T 3h7a_A           85 EVTIFNVGA   93 (252)
T ss_dssp             EEEEECCCC
T ss_pred             eEEEECCCc
Confidence            999999984

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.78  E-value=0.011  Score=52.27  Aligned_cols=101  Identities=18%  Similarity=0.253  Sum_probs=63.0

Q ss_pred             CCCEEEEEcC-CH--HHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCC-C-eE--EeCCCCCchhH-HHHhhC-
Q 016660          201 VGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-T-EF--VNSKNCGDKSI-IIDMTD-  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~--vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~-~-~v--v~~~~~~~~~~-i~~~~~-  267 (385)
                      .+.++||+|+ |.  +|...++.+...|+ +|++++++++..+.+++    ++. . .+  .|..+...... +..... 
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            4678999986 66  99999988888999 89988887755444433    333 1 22  23333222111 222211 


Q ss_pred             -CCccEEEEccCChH-----------------------------HHHHHHHHhccCCceEEEeccC
Q 016660          268 -GGADYCFECVGLAS-----------------------------LVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       268 -g~~d~vid~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                       +.+|++|+++|...                             ..+.++..++++ |+++.++..
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-g~iv~isS~  149 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEG-GSIVTLTYL  149 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTC-EEEEEEECG
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCC-ceEEEEecc
Confidence             36899999987421                             223455566676 999988754

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.77  E-value=0.013  Score=51.90  Aligned_cols=102  Identities=11%  Similarity=0.024  Sum_probs=64.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH---HHcCCCeE---EeCCCCCchhH-HHHhhC--CCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG---KRFGVTEF---VNSKNCGDKSI-IIDMTD--GGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~---~~lg~~~v---v~~~~~~~~~~-i~~~~~--g~~  270 (385)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+   .+.+....   .|..+...... +.+...  |+.
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~i   84 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRL   84 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            5788999987 9999999998889999 888888877654433   33444322   23333221111 222211  479


Q ss_pred             cEEEEccCCh------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          271 DYCFECVGLA------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       271 d~vid~~g~~------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      |++++++|..                        ...+.++..|+.++|++|.++..
T Consensus        85 DiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~  141 (258)
T 4gkb_A           85 DGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSK  141 (258)
T ss_dssp             CEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCT
T ss_pred             CEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeeh
Confidence            9999999851                        11234555665434899988753

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.77  E-value=0.016  Score=51.16  Aligned_cols=167  Identities=14%  Similarity=0.151  Sum_probs=93.3

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC--eE--EeCCCCCchhH-HHHhh--
Q 016660          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT--EF--VNSKNCGDKSI-IIDMT--  266 (385)
Q Consensus       201 ~~~~VlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~--~v--v~~~~~~~~~~-i~~~~--  266 (385)
                      +|+++||.|+ |  ++|.+.++.+...|+ +|+.++++++..+.+.    +++..  ..  .|..+...... +.+..  
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKD   83 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5889999996 5  899999999999999 8999999887665443    34432  22  23333111111 22111  


Q ss_pred             CCCccEEEEccCCh--------------HHH---------------HHHHHHhccCCceEEEeccCCCCCccccc-----
Q 016660          267 DGGADYCFECVGLA--------------SLV---------------QEAYACCRKGWGKTIVLGVDQPGSQLSLS-----  312 (385)
Q Consensus       267 ~g~~d~vid~~g~~--------------~~~---------------~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-----  312 (385)
                      -|.+|++++++|..              +.+               +.....++++ |++|.++........+-.     
T Consensus        84 ~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-G~IVnisS~~~~~~~~~~~~Y~a  162 (256)
T 4fs3_A           84 VGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEG-GSIVATTYLGGEFAVQNYNVMGV  162 (256)
T ss_dssp             HCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTC-EEEEEEECGGGTSCCTTTHHHHH
T ss_pred             hCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CEEEEEeccccccCcccchhhHH
Confidence            14799999988731              001               2234456675 999988754322211111     


Q ss_pred             ------------HHHHhhcCcEEEEeeecCCCC-----CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcC
Q 016660          313 ------------SFEVLHSGKILMGSLFGGLKA-----KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG  374 (385)
Q Consensus       313 ------------~~~~~~~~~~i~g~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~  374 (385)
                                  ..++-.+++++....-+...+     ....++..+.+.+. ++..    +.-.-+|+.++..+|.+.
T Consensus       163 sKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~-~Pl~----R~g~peevA~~v~fL~Sd  236 (256)
T 4fs3_A          163 AKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKER-APLK----RNVDQVEVGKTAAYLLSD  236 (256)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHH-STTS----SCCCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhc-CCCC----CCcCHHHHHHHHHHHhCc
Confidence                        012334677776654433221     11234444444332 1222    223467899998888754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.77  E-value=0.0026  Score=55.60  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=69.0

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhh----
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMT----  266 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~----  266 (385)
                      .....++.+||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|...-+.....+....+..+.    
T Consensus        55 l~~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~  133 (239)
T 2hnk_A           55 LTKISGAKRIIEIGTFT-GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKS  133 (239)
T ss_dssp             HHHHHTCSEEEEECCTT-CHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSS
T ss_pred             HHHhhCcCEEEEEeCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcc
Confidence            34456788999999874 888999999874 2399999999988877765    3543211111111222122221    


Q ss_pred             ----------C-CCccEEEEccCCh---HHHHHHHHHhccCCceEEEec
Q 016660          267 ----------D-GGADYCFECVGLA---SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       267 ----------~-g~~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~g  301 (385)
                                + +.||+||......   ..++.+.+.|+++ |.++...
T Consensus       134 ~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  181 (239)
T 2hnk_A          134 APSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPG-GLLIADN  181 (239)
T ss_dssp             CCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence                      2 5799998766544   4468889999997 9988653

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.76  E-value=0.013  Score=52.91  Aligned_cols=78  Identities=22%  Similarity=0.216  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCC---C-eE--EeCCCCCchhH-HHHhh--
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV---T-EF--VNSKNCGDKSI-IIDMT--  266 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~---~-~v--v~~~~~~~~~~-i~~~~--  266 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+.   . .+  .|..+...... +.+..  
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            4678999987 9999999999988999 8999999887665432    2233   2 12  23333111111 11111  


Q ss_pred             CCCccEEEEccCC
Q 016660          267 DGGADYCFECVGL  279 (385)
Q Consensus       267 ~g~~d~vid~~g~  279 (385)
                      -+++|++|+++|.
T Consensus       104 ~g~iD~lvnnAG~  116 (297)
T 1xhl_A          104 FGKIDILVNNAGA  116 (297)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1369999999873

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.76  E-value=0.0045  Score=54.37  Aligned_cols=75  Identities=21%  Similarity=0.286  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc--hHHHHHHHcCCCeE---EeCCCCCchhHHHHhh-CCCccEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKRFGVTEF---VNSKNCGDKSIIIDMT-DGGADYC  273 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~lg~~~v---v~~~~~~~~~~i~~~~-~g~~d~v  273 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.++++.  +..+.+++.|....   .|..+.   ..+.... .+++|++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~---~~v~~~~~~g~iDiL   83 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNASALLIDFADP---LAAKDSFTDAGFDIL   83 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTST---TTTTTSSTTTCCCEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCH---HHHHHHHHhCCCCEE
Confidence            5788999987 9999999999999999 888888764  34556667776432   233332   2233332 3489999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      ++++|.
T Consensus        84 VNNAGi   89 (247)
T 4hp8_A           84 VNNAGI   89 (247)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999885

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=96.76  E-value=0.015  Score=51.72  Aligned_cols=101  Identities=20%  Similarity=0.240  Sum_probs=61.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCCchHHHHH----HHcCCCeEEeCCCCCchhHHHHhh------C
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTEFVNSKNCGDKSIIIDMT------D  267 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~~~~------~  267 (385)
                      ..+.++||+|+ |++|...++.+...|+ +|+++ .+++++.+.+    +..+....+-.-+......+.++.      -
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35788999987 9999999988888899 67766 5555544432    334543222112212222222221      1


Q ss_pred             CCccEEEEccCCh-------------------------HHHHHHHHHhccCCceEEEecc
Q 016660          268 GGADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       268 g~~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +++|++|+++|..                         ...+.++..++++ |++|.++.
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~isS  162 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG-GRIINMST  162 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CeEEEEeC
Confidence            3799999999841                         1133556667776 99998875

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.76  E-value=0.0081  Score=53.45  Aligned_cols=79  Identities=16%  Similarity=0.298  Sum_probs=51.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-H----HcCCCeE---EeCCCCCchhH-HHHhh--C
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K----RFGVTEF---VNSKNCGDKSI-IIDMT--D  267 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~----~lg~~~v---v~~~~~~~~~~-i~~~~--~  267 (385)
                      -.+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ +    +.+....   .|..+...... +....  -
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF   97 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35688999987 9999999999999999 899998887765533 2    2354322   23333111111 11111  1


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|+++|.
T Consensus        98 g~iD~lvnnAg~  109 (267)
T 1vl8_A           98 GKLDTVVNAAGI  109 (267)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            369999999874

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.75  E-value=0.0076  Score=53.32  Aligned_cols=75  Identities=16%  Similarity=0.197  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-H---HcCCCe-E--EeCCCCCchhHHHHh-------
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K---RFGVTE-F--VNSKNCGDKSIIIDM-------  265 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~---~lg~~~-v--v~~~~~~~~~~i~~~-------  265 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+ +   +.+... +  .|..+   ...+.+.       
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS---RSERQELMNTVANH   83 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC---HHHHHHHHHHHHHH
Confidence            4678999987 9999999999888999 899998887765532 2   234322 2  23333   2222222       


Q ss_pred             hCCCccEEEEccCC
Q 016660          266 TDGGADYCFECVGL  279 (385)
Q Consensus       266 ~~g~~d~vid~~g~  279 (385)
                      ..+++|++|+++|.
T Consensus        84 ~~g~id~lv~~Ag~   97 (260)
T 2ae2_A           84 FHGKLNILVNNAGI   97 (260)
T ss_dssp             TTTCCCEEEECCCC
T ss_pred             cCCCCCEEEECCCC
Confidence            12579999999883

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.75  E-value=0.0081  Score=53.60  Aligned_cols=78  Identities=18%  Similarity=0.192  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeEEeCCCCCchhHHHHh-------hCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSIIIDM-------TDG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~~~-------~~g  268 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+    ++.+....+..-+......+.++       .++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999987 9999999999999999 899999887765533    22344322111121222222221       226


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        99 ~id~lv~nAg~  109 (273)
T 1ae1_A           99 KLNILVNNAGV  109 (273)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            79999999884

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.75  E-value=0.0074  Score=53.90  Aligned_cols=78  Identities=18%  Similarity=0.160  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc---C---CC-eE--EeCCCCCchhH-HHHhh--
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF---G---VT-EF--VNSKNCGDKSI-IIDMT--  266 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l---g---~~-~v--v~~~~~~~~~~-i~~~~--  266 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. ++   .   .. .+  .|..+...... +....  
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            4678999987 9999999998888999 8999988887765432 23   2   11 12  23333111111 11111  


Q ss_pred             CCCccEEEEccCC
Q 016660          267 DGGADYCFECVGL  279 (385)
Q Consensus       267 ~g~~d~vid~~g~  279 (385)
                      -+++|++|+++|.
T Consensus        84 ~g~id~lv~~Ag~   96 (278)
T 1spx_A           84 FGKLDILVNNAGA   96 (278)
T ss_dssp             HSCCCEEEECCC-
T ss_pred             cCCCCEEEECCCC
Confidence            1369999999874

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.74  E-value=0.0097  Score=52.56  Aligned_cols=77  Identities=16%  Similarity=0.259  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeE---EeCCCCCchhH-HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSI-IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v---v~~~~~~~~~~-i~~~~~--g~  269 (385)
                      +|+++||.|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|.+..   .|..+...... +.+...  |+
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   84 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSR   84 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5788999987 9999999999989999 899999998876543    34565433   23333221111 222111  37


Q ss_pred             ccEEEEccC
Q 016660          270 ADYCFECVG  278 (385)
Q Consensus       270 ~d~vid~~g  278 (385)
                      .|++++++|
T Consensus        85 iDiLVNNAG   93 (254)
T 4fn4_A           85 IDVLCNNAG   93 (254)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999987

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.74  E-value=0.007  Score=56.46  Aligned_cols=128  Identities=19%  Similarity=0.202  Sum_probs=82.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc-CCCEEE-EEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          203 STVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~-G~~~vi-~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      -+|.|+|.|.+|...+..++.. ++ +++ ++++++++.+.++++|+. +  +.+      ..++... .+|+|+.|++.
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~a~~~g~~-~--~~~------~~~ll~~~~~D~V~i~tp~   75 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNL-EVHGVFDILAEKREAAAQKGLK-I--YES------YEAVLADEKVDAVLIATPN   75 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTE-EEEEEECSSHHHHHHHHTTTCC-B--CSC------HHHHHHCTTCCEEEECSCG
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHhcCCc-e--eCC------HHHHhcCCCCCEEEEcCCc
Confidence            3689999999999888877765 67 555 557888888877777763 2  222      2333333 79999999998


Q ss_pred             hHHHHHHHHHhccCCceEEEeccCCCCCcccccHH------HHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          280 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF------EVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~------~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      ....+.+..++..  |+-|++...     +..+..      .+. .++..+.-.  ....+...+..+.+++++|.+
T Consensus        76 ~~h~~~~~~al~a--GkhVl~EKP-----~a~~~~ea~~l~~~a~~~g~~~~v~--~~~r~~p~~~~~k~~i~~g~i  143 (359)
T 3e18_A           76 DSHKELAISALEA--GKHVVCEKP-----VTMTSEDLLAIMDVAKRVNKHFMVH--QNRRWDEDFLIIKEMFEQKTI  143 (359)
T ss_dssp             GGHHHHHHHHHHT--TCEEEEESS-----CCSSHHHHHHHHHHHHHHTCCEEEE--CGGGGCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHC--CCCEEeeCC-----CcCCHHHHHHHHHHHHHhCCeEEEE--eeeccCHHHHHHHHHHHcCCC
Confidence            8878888888888  555666432     222221      111 234443322  122333567888888888855

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.74  E-value=0.0088  Score=52.50  Aligned_cols=78  Identities=21%  Similarity=0.213  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCe-E--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.    +.|... .  .|..+...... +....  -++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   84 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGG   84 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999987 9999999999998999 8999988877665432    234332 2  23333111111 11111  147


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        85 id~lv~nAg~   94 (247)
T 2jah_A           85 LDILVNNAGI   94 (247)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.74  E-value=0.012  Score=52.10  Aligned_cols=40  Identities=33%  Similarity=0.266  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  241 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~   46 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQ   46 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            4678999987 9999999999999999 89999888776543

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.74  E-value=0.0099  Score=51.80  Aligned_cols=76  Identities=17%  Similarity=0.182  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCCCchhHHHHhhCC--CccEEEEc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSIIIDMTDG--GADYCFEC  276 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~~~~~~i~~~~~g--~~d~vid~  276 (385)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+ +.-..++. -+......+.+....  ++|++|++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~~~~~~~~id~vi~~   83 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVC-VDLGDWDATEKALGGIGPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEE-CCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCCcEE-ecCCCHHHHHHHHHHcCCCCEEEEC
Confidence            4678999987 9999999999999999 89999888877654433 32223332 222233334554443  68999999


Q ss_pred             cC
Q 016660          277 VG  278 (385)
Q Consensus       277 ~g  278 (385)
                      +|
T Consensus        84 Ag   85 (244)
T 1cyd_A           84 AA   85 (244)
T ss_dssp             CC
T ss_pred             Cc
Confidence            88

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.73  E-value=0.014  Score=53.50  Aligned_cols=78  Identities=12%  Similarity=0.146  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCC--C-eE--EeCCCCCchhH-HHHhh--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--T-EF--VNSKNCGDKSI-IIDMT--D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~--~-~v--v~~~~~~~~~~-i~~~~--~  267 (385)
                      .+.+|||+|+ |++|...++.+...|+ +|++++++.++.+.+.    ..+.  . .+  .|..+...... +....  -
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            4678999997 9999999999989999 8999999888765432    2232  2 12  23333111111 22111  2


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|+++|.
T Consensus        86 g~id~lv~nAg~   97 (319)
T 3ioy_A           86 GPVSILCNNAGV   97 (319)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999983

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.71  E-value=0.027  Score=50.02  Aligned_cols=75  Identities=23%  Similarity=0.345  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCC--C-eEE--eCCCCCchhHHHHhh------C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGV--T-EFV--NSKNCGDKSIIIDMT------D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~--~-~vv--~~~~~~~~~~i~~~~------~  267 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+. .++++.  . .++  |..+   ...+..+.      -
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~~   90 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK---DEDVRNLVDTTIAKH   90 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC---HHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCC---HHHHHHHHHHHHHHc
Confidence            4678999987 9999999999988999 89999888766543 334432  1 222  3332   22222221      1


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|+++|.
T Consensus        91 ~~id~li~~Ag~  102 (278)
T 2bgk_A           91 GKLDIMFGNVGV  102 (278)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            369999999873

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.70  E-value=0.0093  Score=52.95  Aligned_cols=78  Identities=26%  Similarity=0.255  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc-----CCCe-E--EeCCCCCchhH-HHHhh--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVTE-F--VNSKNCGDKSI-IIDMT--D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l-----g~~~-v--v~~~~~~~~~~-i~~~~--~  267 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. ++     +... .  .|..+...... +....  -
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4678999987 9999999999888999 8999988887655432 22     4332 2  23333111111 22111  1


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|+++|.
T Consensus        91 g~id~lv~nAg~  102 (267)
T 1iy8_A           91 GRIDGFFNNAGI  102 (267)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            369999999873

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.70  E-value=0.009  Score=53.49  Aligned_cols=78  Identities=23%  Similarity=0.229  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeE---EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF---VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~v---v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+ ++++....   .|..+...... +....  -+++|+
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDV  104 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5788999987 9999999999999999 899998888776544 34554322   23333111111 22211  136999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus       105 lv~nAg~  111 (277)
T 4dqx_A          105 LVNNAGF  111 (277)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999984

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.69  E-value=0.0069  Score=52.91  Aligned_cols=75  Identities=24%  Similarity=0.280  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-----cCCCe-EE--eCCCCCchhHHHHhh-----
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVTE-FV--NSKNCGDKSIIIDMT-----  266 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-----lg~~~-vv--~~~~~~~~~~i~~~~-----  266 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.+     .+... ++  |..+   ...+.+..     
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~   81 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLS---EESINKAFEEIYN   81 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCC---HHHHHHHHHHHHH
Confidence            4678999987 9999999999888999 89999888776654322     34332 22  3332   22222221     


Q ss_pred             -CCCccEEEEccCC
Q 016660          267 -DGGADYCFECVGL  279 (385)
Q Consensus       267 -~g~~d~vid~~g~  279 (385)
                       -+++|++|+++|.
T Consensus        82 ~~~~~d~vi~~Ag~   95 (248)
T 2pnf_A           82 LVDGIDILVNNAGI   95 (248)
T ss_dssp             HSSCCSEEEECCCC
T ss_pred             hcCCCCEEEECCCC
Confidence             2479999999874

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.69  E-value=0.01  Score=56.33  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=67.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      ....|+|+|.|.+|...++.++..|. .|++++.++++.+.+++.|...++ -+. .....+....-..+|+||-+++..
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~-GDa-t~~~~L~~agi~~A~~viv~~~~~   79 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFY-GDA-TRMDLLESAGAAKAEVLINAIDDP   79 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEE-SCT-TCHHHHHHTTTTTCSEEEECCSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEE-cCC-CCHHHHHhcCCCccCEEEECCCCh
Confidence            34569999999999999999999999 899999999999999999876443 222 223323333223799999999987


Q ss_pred             HHHHH---HHHHhccCCceEEEec
Q 016660          281 SLVQE---AYACCRKGWGKTIVLG  301 (385)
Q Consensus       281 ~~~~~---~~~~l~~~~G~~v~~g  301 (385)
                      ..-..   ..+.+.+. .+++.-.
T Consensus        80 ~~n~~i~~~ar~~~p~-~~Iiara  102 (413)
T 3l9w_A           80 QTNLQLTEMVKEHFPH-LQIIARA  102 (413)
T ss_dssp             HHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred             HHHHHHHHHHHHhCCC-CeEEEEE
Confidence            63323   33344453 4555443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.68  E-value=0.0071  Score=54.78  Aligned_cols=101  Identities=16%  Similarity=0.243  Sum_probs=72.5

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-eE-EeCCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF-VNSKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~v-v~~~~~~~~~~i~~~~  266 (385)
                      +.....++++.+||-+|+|. |..+..+++..|. +|++++.+++.++.+++    .|.. .+ +...+  .    ..+ 
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~----~~~-  134 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG--W----EEF-  134 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECC--G----GGC-
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC--H----HHc-
Confidence            44556788999999999986 8888999998887 89999999998887765    3432 11 11112  1    223 


Q ss_pred             CCCccEEEEccCC---------------hHHHHHHHHHhccCCceEEEeccC
Q 016660          267 DGGADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       267 ~g~~d~vid~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      .+.||+|+....-               ...++.+.+.|+++ |++++....
T Consensus       135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~  185 (302)
T 3hem_A          135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTIT  185 (302)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT-CEEEEEEEE
T ss_pred             CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC-cEEEEEEEe
Confidence            4589999864321               25578899999997 999877654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.67  E-value=0.0092  Score=54.11  Aligned_cols=79  Identities=25%  Similarity=0.262  Sum_probs=52.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCe-E--EeCCCCCchhH-HHHhh--CC
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~-v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      -.+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+... +  .|..+...... +....  .+
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            36789999987 9999999999999999 8999999888765433    234432 2  23333111111 12111  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus       108 ~id~lvnnAg~  118 (301)
T 3tjr_A          108 GVDVVFSNAGI  118 (301)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999984

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.66  E-value=0.01  Score=53.13  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe-E--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+    ++.|... +  .|..+...... +....  -++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   99 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP   99 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            4678999987 9999999999999999 899998887765432    2235432 2  23333111111 11111  236


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus       100 iD~lv~~Ag~  109 (277)
T 2rhc_B          100 VDVLVNNAGR  109 (277)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.66  E-value=0.008  Score=54.15  Aligned_cols=79  Identities=25%  Similarity=0.207  Sum_probs=54.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEEeCCCCCchhHHHHhhC--CCccEEEE
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSIIIDMTD--GGADYCFE  275 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv~~~~~~~~~~i~~~~~--g~~d~vid  275 (385)
                      -++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. +++....+-.-+......+.++..  +++|++|+
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv~   92 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLIN   92 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEEE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEEE
Confidence            35788999987 9999999999999999 8999999888776554 444332222222223333444433  37899999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      ++|.
T Consensus        93 nAg~   96 (291)
T 3rd5_A           93 NAGI   96 (291)
T ss_dssp             CCCC
T ss_pred             CCcC
Confidence            9884

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.66  E-value=0.0087  Score=52.76  Aligned_cols=78  Identities=24%  Similarity=0.308  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCe-E--EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+ ++++... .  .|..+...... +.+..  -+++|+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4678999987 9999999999999999 899998888776543 3444322 1  23333111111 22111  136999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        83 lv~nAg~   89 (254)
T 1hdc_A           83 LVNNAGI   89 (254)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999874

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.66  E-value=0.0046  Score=51.47  Aligned_cols=99  Identities=14%  Similarity=0.173  Sum_probs=66.5

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCe--EEeCCCCCchhHHHHhhCCC
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~--vv~~~~~~~~~~i~~~~~g~  269 (385)
                      ...++++++||=+|+|. |..+..+++. +. +|++++.+++.++.+++    .|.+.  ++. .+   ...+..+.++.
T Consensus        17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~~---~~~l~~~~~~~   89 (185)
T 3mti_A           17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELIL-DG---HENLDHYVREP   89 (185)
T ss_dssp             HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-SC---GGGGGGTCCSC
T ss_pred             HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-Cc---HHHHHhhccCC
Confidence            34578899999999876 7788888887 66 99999999988877654    34332  232 22   11122233447


Q ss_pred             ccEEEEccCC-----------h----HHHHHHHHHhccCCceEEEecc
Q 016660          270 ADYCFECVGL-----------A----SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       270 ~d~vid~~g~-----------~----~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ||+|+-..+.           .    ..++.+.+.|+++ |+++.+..
T Consensus        90 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~  136 (185)
T 3mti_A           90 IRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG-GRLAIMIY  136 (185)
T ss_dssp             EEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             cCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            9999755321           1    3357888999997 99887654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.65  E-value=0.01  Score=52.38  Aligned_cols=78  Identities=23%  Similarity=0.246  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCe-E--EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+.++||.|+ |++|...++.+...|+ +|++++++.++.+.+ ++++... .  .|..+...... +.+..  -+++|+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   85 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDI   85 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5688999987 9999999999989999 899998888776543 4455432 2  23333111111 22211  237999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        86 lv~~Ag~   92 (259)
T 4e6p_A           86 LVNNAAL   92 (259)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999885

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.65  E-value=0.0056  Score=55.85  Aligned_cols=91  Identities=20%  Similarity=0.184  Sum_probs=63.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHH--HcCCCEEEEEcCCchH--HHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEcc
Q 016660          203 STVVIFGLGSIGLAVAEGAR--LCGATRIIGVDVISEK--FEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECV  277 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~--~~G~~~vi~~~~~~~~--~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~  277 (385)
                      -+|.|+|+|.+|...+..+.  .-+.+.+.++++++++  .++++++|.....   +  ....+.+.+.+ ++|+||+++
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~---~--~~e~ll~~~~~~~iDvV~~at   79 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY---A--GVEGLIKLPEFADIDFVFDAT   79 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES---S--HHHHHHHSGGGGGEEEEEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCccc---C--CHHHHHhccCCCCCcEEEECC
Confidence            47899999999998888874  4467455566666565  5677788875221   1  22223333333 799999999


Q ss_pred             CChHHHHHHHHHhcc--CCceEEE
Q 016660          278 GLASLVQEAYACCRK--GWGKTIV  299 (385)
Q Consensus       278 g~~~~~~~~~~~l~~--~~G~~v~  299 (385)
                      +.....+.+..+++.  | .++++
T Consensus        80 p~~~h~~~a~~al~a~~G-k~Vi~  102 (312)
T 1nvm_B           80 SASAHVQNEALLRQAKPG-IRLID  102 (312)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CEEEE
T ss_pred             ChHHHHHHHHHHHHhCCC-CEEEE
Confidence            987777888888887  7 77665

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.65  E-value=0.01  Score=52.41  Aligned_cols=78  Identities=26%  Similarity=0.273  Sum_probs=49.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc-----CCC-eE--EeCCCCCchhH-HHHhhCC-
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVT-EF--VNSKNCGDKSI-IIDMTDG-  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l-----g~~-~v--v~~~~~~~~~~-i~~~~~g-  268 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. ++     +.. .+  .|..+...... +.+.... 
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            4678999987 9999999999888999 8999988877655432 22     312 22  23333111111 2222222 


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        85 gid~lv~~Ag~   95 (260)
T 2z1n_A           85 GADILVYSTGG   95 (260)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            49999999883

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.65  E-value=0.01  Score=52.20  Aligned_cols=78  Identities=26%  Similarity=0.276  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHHHhh------CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIIIDMT------DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~~~------~g~  269 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+....+-.-+......+.++.      -++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGG   86 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5788999987 9999999999999999 8999999887765443    23432221112212222222211      137


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        87 id~li~~Ag~   96 (253)
T 3qiv_A           87 IDYLVNNAAI   96 (253)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999875

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.64  E-value=0.0089  Score=50.11  Aligned_cols=97  Identities=19%  Similarity=0.248  Sum_probs=62.8

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCC---------CEEEEEcCCchHHHHHHHcCCCeEEeCCCCCch---hHHHHh
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGA---------TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK---SIIIDM  265 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~---------~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~---~~i~~~  265 (385)
                      .++++++||-+|+|. |.+++.+++..|.         .+|++++.++...     +.....+...+....   ..+...
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~   92 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGATFLCPADVTDPRTSQRILEV   92 (196)
T ss_dssp             CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCEEECSCCTTSHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc-----CCCCeEEEeccCCCHHHHHHHHHh
Confidence            367899999999988 9999999998873         4899999887431     111123301111111   112233


Q ss_pred             hCC-CccEEEE-----ccCCh------------HHHHHHHHHhccCCceEEEec
Q 016660          266 TDG-GADYCFE-----CVGLA------------SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       266 ~~g-~~d~vid-----~~g~~------------~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .++ .||+|+.     +++..            ..++.+.+.|+++ |++++..
T Consensus        93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~  145 (196)
T 2nyu_A           93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG-GTFLCKT  145 (196)
T ss_dssp             SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-CEEEEEe
Confidence            444 7999994     33332            4577889999997 9988764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.64  E-value=0.0078  Score=53.07  Aligned_cols=102  Identities=16%  Similarity=0.217  Sum_probs=71.6

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC----eEEeCCCCCchhHHHHhhCC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT----EFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~----~vv~~~~~~~~~~i~~~~~g  268 (385)
                      +.....+.++.+||-+|+| .|..+..+++..+. +|++++.+++.++.+++....    .++..+-...     .+..+
T Consensus        47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-----~~~~~  119 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEANDILTK-----EFPEN  119 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC-----CCCTT
T ss_pred             HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC-----CCCCC
Confidence            4455678899999999987 58888888887787 999999999999998876532    1221111000     11234


Q ss_pred             CccEEEEccCC--------hHHHHHHHHHhccCCceEEEecc
Q 016660          269 GADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       269 ~~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .||+|+....-        ...++.+.+.|+++ |.++....
T Consensus       120 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  160 (266)
T 3ujc_A          120 NFDLIYSRDAILALSLENKNKLFQKCYKWLKPT-GTLLITDY  160 (266)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC-CEEEEEEe
Confidence            79999875332        23468889999997 99887654

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.64  E-value=0.0075  Score=53.65  Aligned_cols=78  Identities=19%  Similarity=0.233  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeE---EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~v---v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+....   .|..+...... +....  -++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   81 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGR   81 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999987 9999999999999999 8999999887765432    2344322   23333111111 22211  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        82 iD~lVnnAG~   91 (264)
T 3tfo_A           82 IDVLVNNAGV   91 (264)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.64  E-value=0.019  Score=51.90  Aligned_cols=78  Identities=18%  Similarity=0.233  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeEE--eCCCCCchhH-HHHhhC--C
Q 016660          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFV--NSKNCGDKSI-IIDMTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vv--~~~~~~~~~~-i~~~~~--g  268 (385)
                      .+.++||+|+ |  ++|...++.+...|+ +|++++++++..+.++    +.+....+  |..+...... +.....  +
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWG  107 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5788999987 5  999999998889999 8999988876544333    34433333  3333111111 222111  4


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus       108 ~iD~lVnnAG~  118 (296)
T 3k31_A          108 SLDFVVHAVAF  118 (296)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999984

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.63  E-value=0.0086  Score=53.40  Aligned_cols=78  Identities=21%  Similarity=0.161  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCeE---EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEF---VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~v---v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+. .++++....   .|..+...... +....  -+++|+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   88 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDI   88 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4788999987 9999999999999999 89999888877654 345554322   23333111111 11111  136999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        89 lv~nAg~   95 (271)
T 3tzq_B           89 VDNNAAH   95 (271)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999874

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.62  E-value=0.0091  Score=50.17  Aligned_cols=102  Identities=20%  Similarity=0.197  Sum_probs=68.4

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHH----cCC-CeE-EeCCCCCchhHHHHhhCC
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGV-TEF-VNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~-~~v-v~~~~~~~~~~i~~~~~g  268 (385)
                      ...++++++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|. ..+ +-..+  .. .+....++
T Consensus        17 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~~-~~~~~~~~   92 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDG--HQ-NMDKYIDC   92 (197)
T ss_dssp             HHHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSC--GG-GGGGTCCS
T ss_pred             HhcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECC--HH-HHhhhccC
Confidence            34678899999999876 788888888764 2289999999988877664    343 222 11111  11 12223334


Q ss_pred             CccEEEEccCC---------------hHHHHHHHHHhccCCceEEEecc
Q 016660          269 GADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       269 ~~d~vid~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .||+|+-..+-               ...++.+.+.|+++ |+++....
T Consensus        93 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~  140 (197)
T 3eey_A           93 PVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG-GIITVVIY  140 (197)
T ss_dssp             CEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             CceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC-CEEEEEEc
Confidence            79999855432               24588999999997 99887643

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.62  E-value=0.012  Score=51.89  Aligned_cols=74  Identities=23%  Similarity=0.302  Sum_probs=49.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe-EE--eCCCCCchhHHHHhh------
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSIIIDMT------  266 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-vv--~~~~~~~~~~i~~~~------  266 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+    ++.+... ++  |..+   ...+.+..      
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~   87 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTN---TESVQNAVRSVHEQ   87 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC---HHHHHHHHHHHHHH
Confidence            4678999987 9999999999988999 899998887765432    2234332 22  3332   22222221      


Q ss_pred             CCCccEEEEccC
Q 016660          267 DGGADYCFECVG  278 (385)
Q Consensus       267 ~g~~d~vid~~g  278 (385)
                      .+++|++|+++|
T Consensus        88 ~~~id~vi~~Ag   99 (260)
T 3awd_A           88 EGRVDILVACAG   99 (260)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            136999999987

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.61  E-value=0.011  Score=53.00  Aligned_cols=96  Identities=15%  Similarity=0.092  Sum_probs=62.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          204 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      +|||+|+ |.+|...++.+... |+ +|+++.+++++...+...++..+ .|..+   ...+.+... ++|+||.+++..
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~~~~~v~~~~~D~~d---~~~l~~~~~-~~d~vi~~a~~~   76 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDDWRGKVSVRQLDYFN---QESMVEAFK-GMDTVVFIPSII   76 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGGGBTTBEEEECCTTC---HHHHHHHTT-TCSEEEECCCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHhhhCCCEEEEcCCCC---HHHHHHHHh-CCCEEEEeCCCC
Confidence            4899997 99999999888877 88 78888888877554444444322 23332   233444443 699999998852


Q ss_pred             -------HHHHHHHHHhccC-CceEEEeccCC
Q 016660          281 -------SLVQEAYACCRKG-WGKTIVLGVDQ  304 (385)
Q Consensus       281 -------~~~~~~~~~l~~~-~G~~v~~g~~~  304 (385)
                             .....+++.++.. -++++.++...
T Consensus        77 ~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           77 HPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             ccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence                   2234455555543 14788887654

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.61  E-value=0.012  Score=51.99  Aligned_cols=78  Identities=18%  Similarity=0.184  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeEEeCCCCCchhHHH----Hhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSIII----DMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vv~~~~~~~~~~i~----~~~--~g~~d~  272 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+ ++++....+-.-+......+.    +..  -+++|+
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   86 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDI   86 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCE
Confidence            4678999987 9999999999999999 899999998876654 345543222112212222222    211  136999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        87 li~~Ag~   93 (261)
T 3n74_A           87 LVNNAGI   93 (261)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999874

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.61  E-value=0.012  Score=52.44  Aligned_cols=78  Identities=19%  Similarity=0.183  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe-EE--eCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-vv--~~~~~~~~~~-i~~~~--~g~  269 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+    ++.+... ++  |..+...... +....  -++
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  108 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD  108 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            4678999987 9999999999999999 899998887765533    2234432 22  3322111111 11111  247


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus       109 iD~li~~Ag~  118 (272)
T 1yb1_A          109 VSILVNNAGV  118 (272)
T ss_dssp             CSEEEECCCC
T ss_pred             CcEEEECCCc
Confidence            9999999974

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.60  E-value=0.0081  Score=53.89  Aligned_cols=78  Identities=21%  Similarity=0.241  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc---CCCeEEeCCCCCchhHHHHhh------CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF---GVTEFVNSKNCGDKSIIIDMT------DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l---g~~~vv~~~~~~~~~~i~~~~------~g~  269 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++   +....+-.-+......+..+.      -++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGG   85 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5788999987 9999999999999999 8999999887765443 22   333222222222222222221      136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        86 iD~lvnnAg~   95 (280)
T 3tox_A           86 LDTAFNNAGA   95 (280)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999883

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.60  E-value=0.0065  Score=52.88  Aligned_cols=94  Identities=18%  Similarity=0.228  Sum_probs=59.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHh-------hC-CCccE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDM-------TD-GGADY  272 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~-------~~-g~~d~  272 (385)
                      +.++||.|+ |++|...++.+...|+ +|+++++++++.+     +....+ .-+......+.++       .+ +++|+
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~g~id~   75 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILV-DGNKNWTEQEQSILEQTASSLQGSQVDG   75 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEEC-CTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCccccc-----cccEEE-eCCCCCHHHHHHHHHHHHHHhCCCCCCE
Confidence            567999987 9999999999999999 8999988776532     111111 1121222222222       12 57999


Q ss_pred             EEEccCC--------hH------------------HHHHHHHHhccCCceEEEeccC
Q 016660          273 CFECVGL--------AS------------------LVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       273 vid~~g~--------~~------------------~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +|+++|.        ..                  ..+.++..++++ |+++.++..
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~  131 (236)
T 1ooe_A           76 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAA  131 (236)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred             EEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccC-CEEEEECch
Confidence            9999983        11                  123445556565 899988753

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.60  E-value=0.012  Score=52.39  Aligned_cols=78  Identities=19%  Similarity=0.202  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEE--eCCCCCchhH-HHHhh--CCCccEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFV--NSKNCGDKSI-IIDMT--DGGADYC  273 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv--~~~~~~~~~~-i~~~~--~g~~d~v  273 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. ++.....+  |..+...... +....  -+++|++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   86 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV   86 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5688999987 9999999999999999 8999988887766543 33322222  3333111111 11111  1369999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      |+++|.
T Consensus        87 v~nAg~   92 (270)
T 1yde_A           87 VNNAGH   92 (270)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999874

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.59  E-value=0.01  Score=53.32  Aligned_cols=78  Identities=9%  Similarity=0.091  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc---CC-C-eE--EeCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF---GV-T-EF--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l---g~-~-~v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. ++   +. . ..  .|..+...... +....  -+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  110 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFA  110 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5788999987 9999999999989999 8999999887765433 22   22 1 22  23333211111 21211  14


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus       111 ~iD~lvnnAG~  121 (281)
T 4dry_A          111 RLDLLVNNAGS  121 (281)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.58  E-value=0.0062  Score=52.56  Aligned_cols=102  Identities=15%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcC-----CCEEEEEcCCchHHHHHHHc----C-----CC--eEEeCCCCCchhH
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCG-----ATRIIGVDVISEKFEIGKRF----G-----VT--EFVNSKNCGDKSI  261 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G-----~~~vi~~~~~~~~~~~~~~l----g-----~~--~vv~~~~~~~~~~  261 (385)
                      .++++++||-+|+|. |..+..+++..+     ..+|++++.+++..+.+++.    +     ..  .++..+-......
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  155 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEE  155 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccc
Confidence            578899999999877 888899999876     12899999999888777642    3     22  2222111001000


Q ss_pred             HHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          262 IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       262 i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                       .....+.||+|+........++.+.+.|+++ |++++.-.
T Consensus       156 -~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lv~~~~  194 (227)
T 2pbf_A          156 -EKKELGLFDAIHVGASASELPEILVDLLAEN-GKLIIPIE  194 (227)
T ss_dssp             -HHHHHCCEEEEEECSBBSSCCHHHHHHEEEE-EEEEEEEE
T ss_pred             -cCccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEEc
Confidence             0012247999998777666678899999997 98876643

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.57  E-value=0.0093  Score=52.66  Aligned_cols=78  Identities=23%  Similarity=0.199  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCe-E--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE-F--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~-v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.+    .+... .  .|..+...... +.+..  -++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGR   83 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4678999987 9999999999999999 89999998887665432    23322 2  23333111111 22111  137


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        84 id~lv~nAg~   93 (257)
T 3imf_A           84 IDILINNAAG   93 (257)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.56  E-value=0.0049  Score=55.90  Aligned_cols=94  Identities=13%  Similarity=0.019  Sum_probs=62.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH-HHHHcCCC--eEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVT--EFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~--~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      .+.+++|+|+|++|.+++..+...|+++|+++.++.++.+ ++++++..  .+++.      ..+.+.. .++|+||+++
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~------~~~~~~~-~~aDivIn~t  212 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSL------AEAETRL-AEYDIIINTT  212 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECH------HHHHHTG-GGCSEEEECS
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeH------HHHHhhh-ccCCEEEECC
Confidence            5789999999999999999999999888999999988865 55566652  22211      1122222 2589999999


Q ss_pred             CChHHH-----HHHHHHhccCCceEEEecc
Q 016660          278 GLASLV-----QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       278 g~~~~~-----~~~~~~l~~~~G~~v~~g~  302 (385)
                      +....-     ......++++ ..++.+..
T Consensus       213 ~~~~~~~~~~~~i~~~~l~~~-~~v~D~~y  241 (297)
T 2egg_A          213 SVGMHPRVEVQPLSLERLRPG-VIVSDIIY  241 (297)
T ss_dssp             CTTCSSCCSCCSSCCTTCCTT-CEEEECCC
T ss_pred             CCCCCCCCCCCCCCHHHcCCC-CEEEEcCC
Confidence            865410     0012345554 55566654

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.55  E-value=0.012  Score=51.79  Aligned_cols=77  Identities=21%  Similarity=0.271  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE--eCCCCCchhH-HHHhh--CCCccEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV--NSKNCGDKSI-IIDMT--DGGADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv--~~~~~~~~~~-i~~~~--~g~~d~vi  274 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+..++++. .++  |..+...... +....  -+++|++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999987 9999999999999999 89999888777444455542 333  3333111111 22111  13699999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      +++|.
T Consensus        83 ~~Ag~   87 (256)
T 2d1y_A           83 NNAAI   87 (256)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99874

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.54  E-value=0.0035  Score=55.25  Aligned_cols=104  Identities=13%  Similarity=0.115  Sum_probs=67.3

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhCC-Cc
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTDG-GA  270 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~g-~~  270 (385)
                      ....++.+||-+|+|. |..++.+|+..+ ..+|++++.+++..+.+++    .|...-+.....+....+..+... .|
T Consensus        59 ~~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~f  137 (248)
T 3tfw_A           59 VRLTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAF  137 (248)
T ss_dssp             HHHHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCC
T ss_pred             HhhcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCe
Confidence            3456789999999875 888889998764 3399999999998887764    354311111111122222233222 79


Q ss_pred             cEEEEccCC---hHHHHHHHHHhccCCceEEEecc
Q 016660          271 DYCFECVGL---ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       271 d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      |+||-....   ...++.+.+.|+++ |.++.-..
T Consensus       138 D~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~~~~  171 (248)
T 3tfw_A          138 DLIFIDADKPNNPHYLRWALRYSRPG-TLIIGDNV  171 (248)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEECC
T ss_pred             EEEEECCchHHHHHHHHHHHHhcCCC-eEEEEeCC
Confidence            999833222   34578889999997 98876543

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.54  E-value=0.0087  Score=52.25  Aligned_cols=72  Identities=15%  Similarity=0.186  Sum_probs=46.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhh-------C-CCc
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMT-------D-GGA  270 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~-------~-g~~  270 (385)
                      ..+.++||.|+ |++|...++.+...|+ +|+++++++++.+     +....+ .-+......+.++.       + +++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~-~~D~~~~~~v~~~~~~~~~~~~~g~i   77 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIV-KMTDSFTEQADQVTAEVGKLLGDQKV   77 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEEC-CCCSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc-----CCcEEE-EcCCCCHHHHHHHHHHHHHHhCCCCC
Confidence            35678999987 9999999999998999 8999988766532     111111 11211222222221       2 579


Q ss_pred             cEEEEccC
Q 016660          271 DYCFECVG  278 (385)
Q Consensus       271 d~vid~~g  278 (385)
                      |++|+++|
T Consensus        78 D~lv~~Ag   85 (241)
T 1dhr_A           78 DAILCVAG   85 (241)
T ss_dssp             EEEEECCC
T ss_pred             CEEEEccc
Confidence            99999988

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.54  E-value=0.014  Score=50.01  Aligned_cols=95  Identities=15%  Similarity=0.087  Sum_probs=61.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCc-hhHHHHhhCCCccEEEEccCChH
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD-KSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~-~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +|||+|+ |.+|...++.+...|+ +|+++++++++.+..  .++ .++..+- .. .+.+.+... ++|+||+++|...
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~--~~~-~~~~~D~-~d~~~~~~~~~~-~~d~vi~~ag~~~   75 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY--NNV-KAVHFDV-DWTPEEMAKQLH-GMDAIINVSGSGG   75 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC--TTE-EEEECCT-TSCHHHHHTTTT-TCSEEEECCCCTT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc--CCc-eEEEecc-cCCHHHHHHHHc-CCCEEEECCcCCC
Confidence            5899997 9999999999999998 899999987764332  122 2222222 22 333454443 6999999998542


Q ss_pred             ---------HHHHHHHHhccC-CceEEEeccCC
Q 016660          282 ---------LVQEAYACCRKG-WGKTIVLGVDQ  304 (385)
Q Consensus       282 ---------~~~~~~~~l~~~-~G~~v~~g~~~  304 (385)
                               ....+++.++.. .++++.++...
T Consensus        76 ~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  108 (219)
T 3dqp_A           76 KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIF  108 (219)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCcEeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence                     122344444432 25888887654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.53  E-value=0.012  Score=52.67  Aligned_cols=78  Identities=22%  Similarity=0.216  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC-eEE--eCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~vv--~~~~~~~~~~-i~~~~--~g~  269 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+.. ..+  |..+...... +.+..  -++
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  109 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGG  109 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5788999987 9999999999999999 8999988877655432    33433 222  3333111111 22211  137


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus       110 iD~lvnnAg~  119 (276)
T 3r1i_A          110 IDIAVCNAGI  119 (276)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.53  E-value=0.013  Score=52.23  Aligned_cols=78  Identities=21%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc---CCCeEEeCCCCCchhHHHHhh-----CCCcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF---GVTEFVNSKNCGDKSIIIDMT-----DGGAD  271 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l---g~~~vv~~~~~~~~~~i~~~~-----~g~~d  271 (385)
                      .+.++||.|+ |++|...++.+...|+ +|++++++++..+.++++   +....+..-+......+..+.     .+++|
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD  108 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVD  108 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCc
Confidence            5788999987 9999999999999999 888888765544444433   332211112212222222111     14799


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++|+++|.
T Consensus       109 ~lv~nAg~  116 (273)
T 3uf0_A          109 VLVNNAGI  116 (273)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999874

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.53  E-value=0.014  Score=52.03  Aligned_cols=78  Identities=23%  Similarity=0.265  Sum_probs=49.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC------------chHHHH----HHHcCCCeEEeCCCCCchhHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI------------SEKFEI----GKRFGVTEFVNSKNCGDKSIII  263 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~------------~~~~~~----~~~lg~~~vv~~~~~~~~~~i~  263 (385)
                      .+.++||.|+ |++|...++.+...|+ +|++++++            .++.+.    ++..+....+-.-+......+.
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   90 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS   90 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            5788999987 9999999999999999 89988876            333332    2334543222222222222222


Q ss_pred             Hhh------CCCccEEEEccCC
Q 016660          264 DMT------DGGADYCFECVGL  279 (385)
Q Consensus       264 ~~~------~g~~d~vid~~g~  279 (385)
                      ++.      -+++|++|+++|.
T Consensus        91 ~~~~~~~~~~g~id~lv~nAg~  112 (278)
T 3sx2_A           91 AALQAGLDELGRLDIVVANAGI  112 (278)
T ss_dssp             HHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCC
Confidence            221      1479999999884

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.52  E-value=0.02  Score=49.39  Aligned_cols=101  Identities=16%  Similarity=0.156  Sum_probs=65.5

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHHH----cCCC--eEEeCCCCCchhHHHHhhCC
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~----lg~~--~vv~~~~~~~~~~i~~~~~g  268 (385)
                      .+.+++.+||=+|+|. |..++.+|+.+  +. +|++++.+++..+.+++    .|..  .+ .....+....+..+..+
T Consensus        52 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~~i-~~~~gda~~~l~~~~~~  128 (221)
T 3dr5_A           52 TNGNGSTGAIAITPAA-GLVGLYILNGLADNT-TLTCIDPESEHQRQAKALFREAGYSPSRV-RFLLSRPLDVMSRLAND  128 (221)
T ss_dssp             SCCTTCCEEEEESTTH-HHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHHHHHHTTCCGGGE-EEECSCHHHHGGGSCTT
T ss_pred             hCCCCCCCEEEEcCCc-hHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcCcE-EEEEcCHHHHHHHhcCC
Confidence            3444566999999876 88888999976  45 99999999998877654    4543  22 11111111112222234


Q ss_pred             CccEEEEccCC---hHHHHHHHHHhccCCceEEEec
Q 016660          269 GADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       269 ~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .||+||--...   ...++.+.+.|+++ |.++.-.
T Consensus       129 ~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~dn  163 (221)
T 3dr5_A          129 SYQLVFGQVSPMDLKALVDAAWPLLRRG-GALVLAD  163 (221)
T ss_dssp             CEEEEEECCCTTTHHHHHHHHHHHEEEE-EEEEETT
T ss_pred             CcCeEEEcCcHHHHHHHHHHHHHHcCCC-cEEEEeC
Confidence            79999754332   23478899999997 8888643

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.52  E-value=0.012  Score=51.88  Aligned_cols=78  Identities=24%  Similarity=0.291  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCeEEeCCCCCchhHHHHhh------CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSIIIDMT------DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~i~~~~------~g~~d~  272 (385)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+. .++++....+-.-+......+.+..      -+++|+
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   89 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDV   89 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            4678999987 9999999999999999 88888887766543 4445543221111212222222221      136999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        90 li~~Ag~   96 (265)
T 2o23_A           90 AVNCAGI   96 (265)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999873

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.51  E-value=0.01  Score=55.08  Aligned_cols=79  Identities=25%  Similarity=0.220  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH-----------HHHHHHcCCCeE---EeCCCCCchhH-HH
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-----------FEIGKRFGVTEF---VNSKNCGDKSI-II  263 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~-----------~~~~~~lg~~~v---v~~~~~~~~~~-i~  263 (385)
                      -.+.++||.|+ +++|...++.+...|+ +|+.+++++++           .+.+++.|....   .|..+...... +.
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~  121 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVE  121 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence            35789999987 9999999999988999 88888887663           233344554322   23333211111 22


Q ss_pred             Hhh--CCCccEEEEccCC
Q 016660          264 DMT--DGGADYCFECVGL  279 (385)
Q Consensus       264 ~~~--~g~~d~vid~~g~  279 (385)
                      +..  -+++|++|+++|.
T Consensus       122 ~~~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          122 KAIKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            221  1379999999984

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.50  E-value=0.014  Score=51.64  Aligned_cols=79  Identities=16%  Similarity=0.142  Sum_probs=52.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeE---EeCCCCCchhH-HHHhh--CC
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~v---v~~~~~~~~~~-i~~~~--~g  268 (385)
                      -.+.++||.|+ +++|...++.+...|+ +|+++++++++.+.+.    +.|....   .|..+...... +.+..  -+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYG   87 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46789999987 9999999999999999 8999999887765432    3344322   23333111111 22211  24


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        88 ~id~lv~nAg~   98 (264)
T 3ucx_A           88 RVDVVINNAFR   98 (264)
T ss_dssp             CCSEEEECCCS
T ss_pred             CCcEEEECCCC
Confidence            79999999864

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.50  E-value=0.015  Score=53.37  Aligned_cols=131  Identities=17%  Similarity=0.181  Sum_probs=80.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCEEE-EEcCCchHHHH-HHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~-G~~~vi-~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      +|.|+|+|.+|...+..++.. ++ +++ +.++++++.+. ++++|+.    +.+      ..++... .+|+|+.|++.
T Consensus         5 ~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~----~~~------~~~~l~~~~~D~V~i~tp~   73 (331)
T 4hkt_A            5 RFGLLGAGRIGKVHAKAVSGNADA-RLVAVADAFPAAAEAIAGAYGCE----VRT------IDAIEAAADIDAVVICTPT   73 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCE----ECC------HHHHHHCTTCCEEEECSCG
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCc-EEEEEECCCHHHHHHHHHHhCCC----cCC------HHHHhcCCCCCEEEEeCCc
Confidence            688999999999888777654 77 555 56777777554 5567764    222      2233333 69999999998


Q ss_pred             hHHHHHHHHHhccCCceEEEeccCCCCCccc-ccHHHHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          280 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      ....+.+..++..  |+-|++.......... ..+.... .++..+.-..  ...+...+..+.+++++|.+
T Consensus        74 ~~h~~~~~~al~~--gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~~~~i~~g~i  141 (331)
T 4hkt_A           74 DTHADLIERFARA--GKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGF--NRRFDPHFMAVRKAIDDGRI  141 (331)
T ss_dssp             GGHHHHHHHHHHT--TCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECC--GGGGCHHHHHHHHHHHTTTT
T ss_pred             hhHHHHHHHHHHc--CCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcc--cccCCHHHHHHHHHHHcCCC
Confidence            8878888888888  4556664321111000 1111122 2344443221  22334568888899998865

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.50  E-value=0.0093  Score=52.40  Aligned_cols=78  Identities=24%  Similarity=0.297  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCC-e--EEeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-E--FVNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~-~--vv~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. .++.. .  ..|..+...... +.+..  -+++|+
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~   86 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDI   86 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5788999987 9999999999999999 8999998887766543 33332 1  223333111111 22211  137999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        87 lv~nAg~   93 (248)
T 3op4_A           87 LVNNAGI   93 (248)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.50  E-value=0.0098  Score=53.11  Aligned_cols=74  Identities=12%  Similarity=0.088  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      ++.+++|+|+|++|.++++.+...|+ +|++++++.++.+ ++++++...-++..+  .. .+.+   +++|++|++++.
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~~~~~~~--~~-~~~~---~~~DivVn~t~~  190 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALS--MD-ELEG---HEFDLIINATSS  190 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECC--SG-GGTT---CCCSEEEECCSC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccCCeeEec--HH-Hhcc---CCCCEEEECCCC
Confidence            57899999999999999999999997 8999999988864 445555310011111  11 1111   579999999997


Q ss_pred             hH
Q 016660          280 AS  281 (385)
Q Consensus       280 ~~  281 (385)
                      ..
T Consensus       191 ~~  192 (271)
T 1nyt_A          191 GI  192 (271)
T ss_dssp             GG
T ss_pred             CC
Confidence            65

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.50  E-value=0.012  Score=51.79  Aligned_cols=78  Identities=18%  Similarity=0.265  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----c--C-CC-eE--EeCCCCCchhH-HHHhh--
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F--G-VT-EF--VNSKNCGDKSI-IIDMT--  266 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----l--g-~~-~v--v~~~~~~~~~~-i~~~~--  266 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.+    .  + .. .+  .|..+...... +.+..  
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            4678999987 9999999998888899 89999998877664432    1  2 21 22  23333111111 22211  


Q ss_pred             CCCccEEEEccCC
Q 016660          267 DGGADYCFECVGL  279 (385)
Q Consensus       267 ~g~~d~vid~~g~  279 (385)
                      -+++|++|+++|.
T Consensus        85 ~g~iD~lvnnAg~   97 (250)
T 3nyw_A           85 YGAVDILVNAAAM   97 (250)
T ss_dssp             HCCEEEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1379999999985

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.49  E-value=0.012  Score=51.33  Aligned_cols=77  Identities=13%  Similarity=0.221  Sum_probs=50.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCe-E--EeCCCCCchhH-HHHhh--CCCccEE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE-F--VNSKNCGDKSI-IIDMT--DGGADYC  273 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~~d~v  273 (385)
                      +.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. +++... .  .|..+...... +....  .+++|++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   81 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELV   81 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEE
Confidence            568999987 9999999998889999 8999999888766543 333221 1  23333111111 11111  1368999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      |+++|.
T Consensus        82 vnnAg~   87 (235)
T 3l6e_A           82 LHCAGT   87 (235)
T ss_dssp             EEECCC
T ss_pred             EECCCC
Confidence            999885

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.49  E-value=0.011  Score=52.43  Aligned_cols=78  Identities=18%  Similarity=0.114  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeEEeCCCCCchhHHHHhh-------CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSIIIDMT-------DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~~~~-------~g  268 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+    ++.+....+..-+......+.+..       .+
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   91 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   91 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            4678999987 9999999999988999 899998887765532    223433211112222222222221       25


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        92 ~id~li~~Ag~  102 (266)
T 1xq1_A           92 KLDILINNLGA  102 (266)
T ss_dssp             CCSEEEEECCC
T ss_pred             CCcEEEECCCC
Confidence            79999999884

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.49  E-value=0.014  Score=52.20  Aligned_cols=79  Identities=18%  Similarity=0.132  Sum_probs=50.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHH----Hhh--CC
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIII----DMT--DG  268 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~----~~~--~g  268 (385)
                      ..+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+....+..-+......+.    ...  -+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            45788999987 9999999998888999 8999999887765432    23443222112222222222    211  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus       101 ~id~lv~nAg~  111 (279)
T 3sju_A          101 PIGILVNSAGR  111 (279)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            69999999884

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.49  E-value=0.019  Score=52.63  Aligned_cols=129  Identities=12%  Similarity=0.145  Sum_probs=77.5

Q ss_pred             EEEEEcCCHHHHHH-HHHHHHcCCCEEEEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCCh
Q 016660          204 TVVIFGLGSIGLAV-AEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLA  280 (385)
Q Consensus       204 ~VlI~G~g~vG~~a-i~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~  280 (385)
                      +|.|+|+|.+|... +..++..+++.+.+.++++++.+ +++++|...++  .+      ..++... .+|+|+.+++..
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~--~~------~~~~l~~~~~D~V~i~tp~~   73 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSV--TS------VEELVGDPDVDAVYVSTTNE   73 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCB--SC------HHHHHTCTTCCEEEECSCGG
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCccc--CC------HHHHhcCCCCCEEEEeCChh
Confidence            58899999999876 54443377833446677777665 45567764322  12      3344443 799999999988


Q ss_pred             HHHHHHHHHhccCCceEEEeccCCCCCcccccHH------HHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          281 SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF------EVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       281 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~------~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      ...+.+..++..  |+-|++...     +..+..      .+. .++..+.-..  ...+...+..+.+++++|.+
T Consensus        74 ~h~~~~~~al~~--Gk~v~~ekP-----~~~~~~~~~~l~~~a~~~g~~~~~~~--~~r~~p~~~~~~~~i~~g~i  140 (332)
T 2glx_A           74 LHREQTLAAIRA--GKHVLCEKP-----LAMTLEDAREMVVAAREAGVVLGTNH--HLRNAAAHRAMRDAIAEGRI  140 (332)
T ss_dssp             GHHHHHHHHHHT--TCEEEECSS-----SCSSHHHHHHHHHHHHHHTCCEEECC--CGGGSHHHHHHHHHHHTTTT
T ss_pred             HhHHHHHHHHHC--CCeEEEeCC-----CcCCHHHHHHHHHHHHHcCCEEEEee--hhhcCHHHHHHHHHHHcCCC
Confidence            767888888887  555555321     222221      111 2344443221  22223457788888888855

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.49  E-value=0.015  Score=52.14  Aligned_cols=78  Identities=17%  Similarity=0.136  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-H---cCCCeE---EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R---FGVTEF---VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~---lg~~~v---v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      ++.++||.|+ |++|...++.+...|+ +|++++++.++.+.+. +   .+....   .|..+...... +.+..  -|+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH  105 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5678999987 9999999999999999 8999998887765433 2   233322   23333111111 22211  137


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus       106 iD~lVnnAg~  115 (283)
T 3v8b_A          106 LDIVVANAGI  115 (283)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.49  E-value=0.01  Score=52.76  Aligned_cols=78  Identities=19%  Similarity=0.296  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-H----cCCCe-E--EeCCCCCchhH-HHHhhC--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R----FGVTE-F--VNSKNCGDKSI-IIDMTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~----lg~~~-v--v~~~~~~~~~~-i~~~~~--g  268 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. +    .+... .  .|..+...... +.....  +
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5688999987 9999999999999999 8999999887765432 1    34432 2  34444222222 222211  3


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        98 ~id~lv~nAg~  108 (266)
T 4egf_A           98 GLDVLVNNAGI  108 (266)
T ss_dssp             SCSEEEEECCC
T ss_pred             CCCEEEECCCc
Confidence            69999999874

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.49  E-value=0.011  Score=52.07  Aligned_cols=78  Identities=22%  Similarity=0.224  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeE---EeCCCCCchhH-HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSI-IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~v---v~~~~~~~~~~-i~~~~~--g~  269 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+....   .|..+...... +.+...  ++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   89 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGK   89 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5788999987 9999999998888899 8999988887665432    3454322   23333111111 222111  37


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        90 id~lv~nAg~   99 (256)
T 3gaf_A           90 ITVLVNNAGG   99 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.48  E-value=0.017  Score=51.67  Aligned_cols=78  Identities=17%  Similarity=0.159  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCC--CeEEeCCCCCchhHHHHhh------CCCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV--TEFVNSKNCGDKSIIIDMT------DGGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~--~~vv~~~~~~~~~~i~~~~------~g~~  270 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+ +++..  ...+-.-+......+.++.      -+++
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARL  106 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            4678999987 9999999999999999 899999887765533 23321  2111111212222222211      2479


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|+++|.
T Consensus       107 D~lvnnAg~  115 (276)
T 2b4q_A          107 DILVNNAGT  115 (276)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.48  E-value=0.012  Score=51.53  Aligned_cols=78  Identities=21%  Similarity=0.225  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHHHH----HHcCCCe-E--EeCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVTE-F--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~~----~~lg~~~-v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++ ++++.+.+    ++.+... .  .|..+...... +....  -+
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFG   81 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4678999987 9999999999999999 8888877 66655432    2235432 2  23333111111 11111  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        82 ~id~lv~nAg~   92 (246)
T 2uvd_A           82 QVDILVNNAGV   92 (246)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999884

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.48  E-value=0.0091  Score=52.69  Aligned_cols=78  Identities=21%  Similarity=0.309  Sum_probs=45.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCC-eE--EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVT-EF--VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~-~v--v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+. .++++.. ..  .|..+...... +....  -+++|+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   84 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHG   84 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5678999987 9999999999999999 89999888776554 3344432 22  23333111111 21111  136999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        85 lv~nAg~   91 (257)
T 3tpc_A           85 LVNCAGT   91 (257)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.47  E-value=0.013  Score=51.44  Aligned_cols=75  Identities=16%  Similarity=0.289  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCe--E--EeCCCCCchhHHHHhh-----CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE--F--VNSKNCGDKSIIIDMT-----DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~--v--v~~~~~~~~~~i~~~~-----~g~  269 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++...  .  .|..+   ...+.+..     .++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~~~   85 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGAAVAARIVADVTD---AEAMTAAAAEAEAVAP   85 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTC---HHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceeEEEEecCC---HHHHHHHHHHHHhhCC
Confidence            4678999987 9999999999988999 899999887766543 3444322  2  23332   22222221     147


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        86 id~li~~Ag~   95 (254)
T 2wsb_A           86 VSILVNSAGI   95 (254)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCcc
Confidence            9999999874

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.47  E-value=0.017  Score=51.63  Aligned_cols=34  Identities=29%  Similarity=0.242  Sum_probs=30.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .+.++||.|+ |++|...++.+...|+ +|++++++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            5788999987 9999999999999999 89998876

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.47  E-value=0.0094  Score=53.38  Aligned_cols=78  Identities=19%  Similarity=0.286  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCe-EE--eCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-FV--NSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-vv--~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+ ++++... .+  |..+...... +....  -+++|+
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  106 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDK  106 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5678999987 9999999999989999 899999888776643 4455432 22  3333111111 22111  136999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus       107 lvnnAg~  113 (277)
T 3gvc_A          107 LVANAGV  113 (277)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999885

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.47  E-value=0.01  Score=52.29  Aligned_cols=75  Identities=13%  Similarity=-0.029  Sum_probs=49.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH---HcCCCeEEeCCCCCchhHHHHhhC--CCccEEEEc
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK---RFGVTEFVNSKNCGDKSIIIDMTD--GGADYCFEC  276 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~---~lg~~~vv~~~~~~~~~~i~~~~~--g~~d~vid~  276 (385)
                      .++||.|+ |++|...++.+...|+ +|+++++++++.+.+.   +.|.+...- +.......+.....  +++|++|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~-d~~~v~~~~~~~~~~~g~iD~lv~n   79 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPM-SEQEPAELIEAVTSAYGQVDVLVSN   79 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEEC-CCCSHHHHHHHHHHHHSCCCEEEEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCcEEEE-CHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            36899987 9999999999999999 8999988877655443   234432211 22122222222221  379999999


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      +|.
T Consensus        80 Ag~   82 (254)
T 1zmt_A           80 DIF   82 (254)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            874

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.46  E-value=0.014  Score=51.65  Aligned_cols=78  Identities=13%  Similarity=0.193  Sum_probs=50.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCC-eE--EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EF--VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~v--v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+ +++... ..  .|..+...... +....  -+++|+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   84 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHV   84 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4678999987 9999999999888999 899998888776543 333321 12  23333111111 21111  136999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        85 lv~~Ag~   91 (260)
T 1nff_A           85 LVNNAGI   91 (260)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999883

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.46  E-value=0.017  Score=52.26  Aligned_cols=78  Identities=21%  Similarity=0.209  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC------------chHHH----HHHHcCCCeEEeCCCCCchhHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI------------SEKFE----IGKRFGVTEFVNSKNCGDKSIII  263 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~------------~~~~~----~~~~lg~~~vv~~~~~~~~~~i~  263 (385)
                      .+.++||.|+ +++|...++.+...|+ +|++++++            .++.+    .+++.|....+-.-+......+.
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~  105 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ  105 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence            5788999987 9999999999999999 88888776            33333    23345544322222222222222


Q ss_pred             Hhh------CCCccEEEEccCC
Q 016660          264 DMT------DGGADYCFECVGL  279 (385)
Q Consensus       264 ~~~------~g~~d~vid~~g~  279 (385)
                      ++.      -+++|++|+++|.
T Consensus       106 ~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          106 AAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHhCCCCEEEECCCC
Confidence            221      1379999998873

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.46  E-value=0.013  Score=51.77  Aligned_cols=78  Identities=17%  Similarity=0.217  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeE---EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v---v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+    ++.+....   .|..+...... +....  -++
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   91 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGG   91 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5688999987 9999999999999999 899998887765432    22343321   23332111111 11111  137


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        92 iD~lv~~Ag~  101 (260)
T 2zat_A           92 VDILVSNAAV  101 (260)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.45  E-value=0.0052  Score=56.22  Aligned_cols=103  Identities=21%  Similarity=0.289  Sum_probs=70.3

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHH----cCCCeE-EeCCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEF-VNSKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~~~v-v~~~~~~~~~~i~~~~  266 (385)
                      +.....++++++||-+|+|. |..++.+++..+. .+|++++.+++..+.+++    .|...+ +...+  .....  ..
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d--~~~~~--~~  141 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGD--GYYGV--PE  141 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC--GGGCC--GG
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECC--hhhcc--cc
Confidence            44556788999999999877 8888888887542 379999999998887765    354332 11111  11100  11


Q ss_pred             CCCccEEEEccCChHHHHHHHHHhccCCceEEEec
Q 016660          267 DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       267 ~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .+.||+|+.........+.+.+.|+++ |+++..-
T Consensus       142 ~~~fD~Iv~~~~~~~~~~~~~~~Lkpg-G~lvi~~  175 (317)
T 1dl5_A          142 FSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVPI  175 (317)
T ss_dssp             GCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEEB
T ss_pred             CCCeEEEEEcCCHHHHHHHHHHhcCCC-cEEEEEE
Confidence            247999998766555457788999997 9987764

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.44  E-value=0.012  Score=51.36  Aligned_cols=74  Identities=19%  Similarity=0.230  Sum_probs=49.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc----CCC-eEE--eCCCCCchhHHHHhh------
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVT-EFV--NSKNCGDKSIIIDMT------  266 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l----g~~-~vv--~~~~~~~~~~i~~~~------  266 (385)
                      +.++||+|+ |++|...+..+...|+ +|+++++++++.+.+. ++    +.. .++  |..+   ...+.+..      
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~   77 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVAD---EGDVNAAIAATMEQ   77 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTC---HHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC---HHHHHHHHHHHHHH
Confidence            568999987 9999999999988999 8999988877665432 22    322 122  3322   22222221      


Q ss_pred             CCCccEEEEccCC
Q 016660          267 DGGADYCFECVGL  279 (385)
Q Consensus       267 ~g~~d~vid~~g~  279 (385)
                      -+++|++|+++|.
T Consensus        78 ~~~id~li~~Ag~   90 (250)
T 2cfc_A           78 FGAIDVLVNNAGI   90 (250)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence            1369999999873

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.43  E-value=0.015  Score=51.74  Aligned_cols=87  Identities=14%  Similarity=0.145  Sum_probs=62.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +.+++|+|+|++|.+++..+...|. +|+++.++.+|.+.+.++++. +..+.+  .        . .+|+||++++...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~~~-~~~~~~--l--------~-~~DiVInaTp~Gm  184 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLGCD-CFMEPP--K--------S-AFDLIINATSASL  184 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHTCE-EESSCC--S--------S-CCSEEEECCTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe-EecHHH--h--------c-cCCEEEEcccCCC
Confidence            8899999999999999999999994 999999999887665578743 333333  1        1 5899999987531


Q ss_pred             ----HH--HHHHHHhccCCceEEEecc
Q 016660          282 ----LV--QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       282 ----~~--~~~~~~l~~~~G~~v~~g~  302 (385)
                          .+  ......++++ ..++.+..
T Consensus       185 ~~~~~l~~~~l~~~l~~~-~~v~D~vY  210 (269)
T 3phh_A          185 HNELPLNKEVLKGYFKEG-KLAYDLAY  210 (269)
T ss_dssp             CCSCSSCHHHHHHHHHHC-SEEEESCC
T ss_pred             CCCCCCChHHHHhhCCCC-CEEEEeCC
Confidence                01  1222356775 66666654

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.43  E-value=0.011  Score=51.72  Aligned_cols=78  Identities=18%  Similarity=0.227  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeEEeCCCCCchhHHHHhh------CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSIIIDMT------DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~~~~------~g~  269 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+    ++.+....+-.-+......+.+..      .++
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   88 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            4678999987 9999999999988999 899998887765432    223433211111212222222221      137


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        89 ~d~vi~~Ag~   98 (255)
T 1fmc_A           89 VDILVNNAGG   98 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.42  E-value=0.011  Score=52.44  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=49.4

Q ss_pred             CCCEEEEEc---CCHHHHHHHHHHHHcCCCEEEEEcCCchH--HHHHHHcCCC-eE--EeCCCCCchhH-HH---HhhC-
Q 016660          201 VGSTVVIFG---LGSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVT-EF--VNSKNCGDKSI-II---DMTD-  267 (385)
Q Consensus       201 ~~~~VlI~G---~g~vG~~ai~la~~~G~~~vi~~~~~~~~--~~~~~~lg~~-~v--v~~~~~~~~~~-i~---~~~~-  267 (385)
                      ++.++||.|   +|++|...++.+...|+ +|+++++++++  .+..++++.. ..  .|..+...... +.   +..+ 
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   84 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            467899998   48999999999989999 89998887765  2334445432 12  23333111111 11   1122 


Q ss_pred             -CCccEEEEccCC
Q 016660          268 -GGADYCFECVGL  279 (385)
Q Consensus       268 -g~~d~vid~~g~  279 (385)
                       +++|++|+++|.
T Consensus        85 ~~~iD~lv~nAg~   97 (269)
T 2h7i_A           85 GNKLDGVVHSIGF   97 (269)
T ss_dssp             TCCEEEEEECCCC
T ss_pred             CCCceEEEECCcc
Confidence             169999999873

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.42  E-value=0.0069  Score=52.29  Aligned_cols=103  Identities=15%  Similarity=0.117  Sum_probs=67.4

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhC----
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTD----  267 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~----  267 (385)
                      ....++.+||-+|+| .|..++.+++..+ ..+|++++.+++..+.+++    .|...-+.....+....+..+..    
T Consensus        65 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~  143 (229)
T 2avd_A           65 ARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA  143 (229)
T ss_dssp             HHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred             HHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCC
Confidence            445678899999987 5888899998763 3399999999998887764    34421111111112222223321    


Q ss_pred             CCccEEEEccCC---hHHHHHHHHHhccCCceEEEec
Q 016660          268 GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       268 g~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +.||+||-....   ...++.+.+.++++ |.++...
T Consensus       144 ~~~D~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~  179 (229)
T 2avd_A          144 GTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLR  179 (229)
T ss_dssp             TCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEC
Confidence            479998754333   24578899999997 9888754

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.42  E-value=0.02  Score=51.16  Aligned_cols=100  Identities=12%  Similarity=0.118  Sum_probs=69.5

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc----CCC-eE-EeCCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT-EF-VNSKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~-~v-v~~~~~~~~~~i~~~~  266 (385)
                      +....++.++.+||-+|+|. |..+..+++..|. +|++++.+++..+.+++.    |.. .+ +...+  .    ..+.
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d--~----~~~~  127 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG--W----EQFD  127 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESC--G----GGCC
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECC--h----hhCC
Confidence            34455678899999999876 7788888977798 999999999988877653    321 11 11111  1    1222


Q ss_pred             CCCccEEEEc-----cC---ChHHHHHHHHHhccCCceEEEecc
Q 016660          267 DGGADYCFEC-----VG---LASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       267 ~g~~d~vid~-----~g---~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                       +.||+|+..     .+   -...++.+.+.|+++ |++++...
T Consensus       128 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  169 (287)
T 1kpg_A          128 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHTI  169 (287)
T ss_dssp             -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred             -CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC-CEEEEEEe
Confidence             579999865     22   134578899999997 99887543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.42  E-value=0.035  Score=50.29  Aligned_cols=87  Identities=22%  Similarity=0.208  Sum_probs=63.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE-eCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv-~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      .+|.|+|.|.+|...+..+...|+ .|++.++++++.+.+.+.|...+. +..+  .       . ...|+||-|++.+.
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~e--~-------~-~~aDvvi~~vp~~~   76 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACGAAASARE--F-------A-GVVDALVILVVNAA   76 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEESSSTT--T-------T-TTCSEEEECCSSHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCccccCCHHH--H-------H-hcCCEEEEECCCHH
Confidence            579999999999999998888999 899999999999988888876422 2222  1       0 14789999998875


Q ss_pred             HHHHHH-------HHhccCCceEEEec
Q 016660          282 LVQEAY-------ACCRKGWGKTIVLG  301 (385)
Q Consensus       282 ~~~~~~-------~~l~~~~G~~v~~g  301 (385)
                      .++..+       ..++++ ..++..+
T Consensus        77 ~~~~v~~~~~~l~~~l~~g-~ivv~~s  102 (303)
T 3g0o_A           77 QVRQVLFGEDGVAHLMKPG-SAVMVSS  102 (303)
T ss_dssp             HHHHHHC--CCCGGGSCTT-CEEEECS
T ss_pred             HHHHHHhChhhHHhhCCCC-CEEEecC
Confidence            455554       345553 4555554

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.41  E-value=0.014  Score=50.07  Aligned_cols=96  Identities=17%  Similarity=0.227  Sum_probs=61.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh-
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA-  280 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~-  280 (385)
                      .+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+. -++ .++ .-+......+.+... ++|+||+++|.. 
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~-~~~-~~Dl~d~~~~~~~~~-~~d~vi~~a~~~~   79 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN-EHL-KVK-KADVSSLDEVCEVCK-GADAVISAFNPGW   79 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC-TTE-EEE-CCCTTCHHHHHHHHT-TCSEEEECCCC--
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc-Cce-EEE-EecCCCHHHHHHHhc-CCCEEEEeCcCCC
Confidence            57999997 9999999999999998 8999999877643221 111 222 222223333455444 599999999864 


Q ss_pred             ----------HHHHHHHHHhccC-CceEEEeccC
Q 016660          281 ----------SLVQEAYACCRKG-WGKTIVLGVD  303 (385)
Q Consensus       281 ----------~~~~~~~~~l~~~-~G~~v~~g~~  303 (385)
                                .....+++.+++. -.+++.++..
T Consensus        80 ~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~  113 (227)
T 3dhn_A           80 NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA  113 (227)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred             CChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCCh
Confidence                      1123445555443 1378888754

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.41  E-value=0.016  Score=52.00  Aligned_cols=78  Identities=19%  Similarity=0.205  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeE---EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF---VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~v---v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+.++||.|+ +++|...++.+...|+ +|++++++.++.+.+. +++....   .|..+...... +.+..  -+++|+
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   82 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDT   82 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            4678999987 9999999999999999 8999999888766543 4444322   23333111111 22221  137999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        83 lvnnAg~   89 (281)
T 3zv4_A           83 LIPNAGI   89 (281)
T ss_dssp             EECCCCC
T ss_pred             EEECCCc
Confidence            9999884

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.40  E-value=0.013  Score=52.69  Aligned_cols=78  Identities=23%  Similarity=0.261  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH-----------HHHHHHcCCCeEE---eCCCCCchhH-HHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-----------FEIGKRFGVTEFV---NSKNCGDKSI-IID  264 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~-----------~~~~~~lg~~~vv---~~~~~~~~~~-i~~  264 (385)
                      .+.++||+|+ +++|...++.+...|+ +|+++++++++           .+.+++.+....+   |..+...... +.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   86 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK   86 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence            4678999987 9999999999988999 89999887652           2233344543222   3333111111 222


Q ss_pred             hh--CCCccEEEEccCC
Q 016660          265 MT--DGGADYCFECVGL  279 (385)
Q Consensus       265 ~~--~g~~d~vid~~g~  279 (385)
                      ..  -+++|++|+++|.
T Consensus        87 ~~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           87 TVEQFGGIDICVNNASA  103 (285)
T ss_dssp             HHHHHSCCSEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence            21  1379999999884

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.39  E-value=0.011  Score=52.71  Aligned_cols=71  Identities=8%  Similarity=0.052  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCC--CeEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGV--TEFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~--~~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      .+.+++|+|+|++|.+++..+...|+++|+++.++.++.+. +++++.  ..++...+         +....+|+||+++
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~---------l~~~~~DivInaT  189 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEA---------LEGQSFDIVVNAT  189 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGG---------GTTCCCSEEEECS
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHH---------hcccCCCEEEECC
Confidence            67899999999999999999999998799999999888664 455553  22332222         1113699999998


Q ss_pred             CCh
Q 016660          278 GLA  280 (385)
Q Consensus       278 g~~  280 (385)
                      +..
T Consensus       190 p~g  192 (272)
T 3pwz_A          190 SAS  192 (272)
T ss_dssp             SGG
T ss_pred             CCC
Confidence            754

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.39  E-value=0.019  Score=50.70  Aligned_cols=78  Identities=18%  Similarity=0.150  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCC-eE--EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EF--VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~-~v--v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. ++... ..  .|..+...... +.+..  -+++|+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~   89 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDL   89 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4678999987 9999999999999999 8999988887766543 33221 12  23333111111 11111  136999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        90 lv~~Ag~   96 (263)
T 3ak4_A           90 LCANAGV   96 (263)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999883

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.39  E-value=0.022  Score=49.81  Aligned_cols=75  Identities=24%  Similarity=0.244  Sum_probs=49.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCC--C-eEE--eCCCCCchhHHHHhh------C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV--T-EFV--NSKNCGDKSIIIDMT------D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~--~-~vv--~~~~~~~~~~i~~~~------~  267 (385)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ +++..  . .++  |..+   ...+.++.      -
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~~   80 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD---EDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC---HHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCC---HHHHHHHHHHHHHHh
Confidence            4678999987 9999999999988999 899998887765543 33321  1 222  3332   22222211      1


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +.+|++|+++|.
T Consensus        81 ~~id~li~~Ag~   92 (251)
T 1zk4_A           81 GPVSTLVNNAGI   92 (251)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            369999999874

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.38  E-value=0.015  Score=54.02  Aligned_cols=134  Identities=16%  Similarity=0.154  Sum_probs=81.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCchHHHH-HHHcCCCeEEeCCCCCchhHHHHhhC-CCccEEEEccCC
Q 016660          203 STVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSIIIDMTD-GGADYCFECVGL  279 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~i~~~~~-g~~d~vid~~g~  279 (385)
                      -+|.|+|.|.+|...+..++.. +++-+.+.++++++.+. ++++|+..   +.+      ..++.. ..+|+|+.|++.
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~---~~~------~~~~l~~~~~D~V~i~tp~   76 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAG---DAT------MEALLAREDVEMVIITVPN   76 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCC---CSS------HHHHHHCSSCCEEEECSCT
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCC---cCC------HHHHhcCCCCCEEEEeCCh
Confidence            3689999999999888777765 77334456777777654 45677653   222      233332 379999999999


Q ss_pred             hHHHHHHHHHhccCCceEEEeccCCCCCccc-ccHHHHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          280 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      ....+.+..++..  |+-|++.......... ..+.... .++..+.-.  ..+.+...+..+.+++++|.+
T Consensus        77 ~~h~~~~~~al~~--gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~--~~~R~~p~~~~~k~~i~~g~i  144 (354)
T 3db2_A           77 DKHAEVIEQCARS--GKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCG--HSSRRLGALRKMKEMIDTKEI  144 (354)
T ss_dssp             TSHHHHHHHHHHT--TCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEE--CGGGGSHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHc--CCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEe--echhcCHHHHHHHHHHhcCCC
Confidence            8878888888888  4556664321111000 1111111 234444322  223334568888888988865

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.38  E-value=0.013  Score=52.21  Aligned_cols=78  Identities=23%  Similarity=0.274  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeEEeCCCCCchhHHHHhh------CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSIIIDMT------DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~~~~------~g~  269 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+    ++.|....+-.-+......+.++.      .++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            5788999987 9999999999999999 899998888765543    233543322222222222222221      237


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus       104 iD~lv~nAg~  113 (271)
T 4ibo_A          104 VDILVNNAGI  113 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.37  E-value=0.024  Score=52.56  Aligned_cols=133  Identities=11%  Similarity=0.057  Sum_probs=81.0

Q ss_pred             CEEEEEcCCHHHH-HHHHHHHHc-CCCEEE-EEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEcc
Q 016660          203 STVVIFGLGSIGL-AVAEGARLC-GATRII-GVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECV  277 (385)
Q Consensus       203 ~~VlI~G~g~vG~-~ai~la~~~-G~~~vi-~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~  277 (385)
                      -+|.|+|+|.+|. ..+..++.. ++ .++ +.++++++.+ +++++|+...   .+      ..++... .+|+|+.|+
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~g~~~~---~~------~~~ll~~~~~D~V~i~t   97 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLT-EVTAIASRRWDRAKRFTERFGGEPV---EG------YPALLERDDVDAVYVPL   97 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTE-EEEEEEESSHHHHHHHHHHHCSEEE---ES------HHHHHTCTTCSEEEECC
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCe-EEEEEEcCCHHHHHHHHHHcCCCCc---CC------HHHHhcCCCCCEEEECC
Confidence            3689999999998 566666555 77 554 5577766655 4566787543   12      3344444 799999999


Q ss_pred             CChHHHHHHHHHhccCCceEEEeccCCCCCccc-ccHHHHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          278 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       278 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      ......+.+..++..  |+-|++.......... ..+.... .++..+.-.  ..+.+...+..+-+++++|.+
T Consensus        98 p~~~h~~~~~~al~a--Gk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~--~~~R~~p~~~~~k~~i~~G~i  167 (350)
T 3rc1_A           98 PAVLHAEWIDRALRA--GKHVLAEKPLTTDRPQAERLFAVARERGLLLMEN--FMFLHHPQHRQVADMLDEGVI  167 (350)
T ss_dssp             CGGGHHHHHHHHHHT--TCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEE--CGGGGCTHHHHHHHHHHTTTT
T ss_pred             CcHHHHHHHHHHHHC--CCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE--ecccCCHHHHHHHHHHhcCCC
Confidence            998878888888888  5556664321111000 1111122 234444322  123334678888899998865

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.37  E-value=0.011  Score=52.30  Aligned_cols=79  Identities=22%  Similarity=0.227  Sum_probs=51.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHHHh----h--CC
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIIIDM----T--DG  268 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~~----~--~g  268 (385)
                      -++.++||+|+ |++|...++.+...|+ +|++++++.++.+.+.    +.+....+..-+......+..+    .  .+
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            35788999987 9999999998888999 8999999887765432    2343322211221222222221    1  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      .+|++|+++|.
T Consensus       106 ~id~lv~~Ag~  116 (262)
T 3rkr_A          106 RCDVLVNNAGV  116 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            69999999885

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.36  E-value=0.013  Score=52.36  Aligned_cols=77  Identities=26%  Similarity=0.215  Sum_probs=48.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe-EE--eCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-vv--~~~~~~~~~~-i~~~~--~g~  269 (385)
                      .+.++||+|+ |++|...+..+...|+ +|+++++++++.+.+    ++.+... ++  |..+...... +....  -+.
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  111 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGT  111 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            4678999987 9999998888888899 898888877654433    2234332 22  3332111111 11111  136


Q ss_pred             ccEEEEccC
Q 016660          270 ADYCFECVG  278 (385)
Q Consensus       270 ~d~vid~~g  278 (385)
                      +|++|+++|
T Consensus       112 id~li~~Ag  120 (279)
T 3ctm_A          112 IDVFVANAG  120 (279)
T ss_dssp             CSEEEECGG
T ss_pred             CCEEEECCc
Confidence            999999887

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.36  E-value=0.0091  Score=52.06  Aligned_cols=77  Identities=17%  Similarity=0.160  Sum_probs=50.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC--CCEEEEEcCCchHHHHHHHc-CCC-eE--EeCCCCCchhH-HH---HhhCC-C
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKRF-GVT-EF--VNSKNCGDKSI-II---DMTDG-G  269 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G--~~~vi~~~~~~~~~~~~~~l-g~~-~v--v~~~~~~~~~~-i~---~~~~g-~  269 (385)
                      +.++||+|+ |++|...++.+...|  + +|++++++.++.+.++++ +.. .+  .|..+...... +.   +..+. +
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~   81 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence            568999987 999999999998899  7 899999988877766655 322 22  23322111111 11   11121 6


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        82 id~li~~Ag~   91 (250)
T 1yo6_A           82 LSLLINNAGV   91 (250)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCcc
Confidence            9999999873

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.35  E-value=0.016  Score=51.69  Aligned_cols=78  Identities=21%  Similarity=0.187  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH-------HH----HHHHcCCCeE---EeCCCCCchhH-HHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------FE----IGKRFGVTEF---VNSKNCGDKSI-IID  264 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~-------~~----~~~~lg~~~v---v~~~~~~~~~~-i~~  264 (385)
                      ++.++||.|+ +++|...++.+...|+ +|+.++++.++       .+    .++..+....   .|..+...... +.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   83 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA   83 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4688999987 9999999999989999 89998887643       11    2233354322   23333111111 222


Q ss_pred             hh--CCCccEEEEccCC
Q 016660          265 MT--DGGADYCFECVGL  279 (385)
Q Consensus       265 ~~--~g~~d~vid~~g~  279 (385)
                      ..  -+++|++|+++|.
T Consensus        84 ~~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           84 TVDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCc
Confidence            21  1379999999984

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.35  E-value=0.014  Score=52.02  Aligned_cols=78  Identities=14%  Similarity=0.016  Sum_probs=49.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHHHHH-Hc----CCCe-E--EeCCCCCch-hHHHHh----
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGK-RF----GVTE-F--VNSKNCGDK-SIIIDM----  265 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~~~-~l----g~~~-v--v~~~~~~~~-~~i~~~----  265 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++ ++++.+.+. ++    +... +  .|..+.... ..+..+    
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   88 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS   88 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHH
Confidence            4678999987 9999999999988999 8999988 776654332 22    4332 2  233332000 222211    


Q ss_pred             h--CCCccEEEEccCC
Q 016660          266 T--DGGADYCFECVGL  279 (385)
Q Consensus       266 ~--~g~~d~vid~~g~  279 (385)
                      .  -+++|++|+++|.
T Consensus        89 ~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           89 FRAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCC
Confidence            1  1369999999883

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.34  E-value=0.021  Score=51.28  Aligned_cols=73  Identities=19%  Similarity=0.166  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcC-----CC-eEEeCCCCCchhHHHHhhCCCccE
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG-----VT-EFVNSKNCGDKSIIIDMTDGGADY  272 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg-----~~-~vv~~~~~~~~~~i~~~~~g~~d~  272 (385)
                      -.+.++||+|+|++|.+++..+...|+++|+++.++.++.+.+ ++++     .. ..++..+  .    .+.. ..+|+
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~--l----~~~l-~~~Di  197 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARG--I----EDVI-AAADG  197 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTT--H----HHHH-HHSSE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHH--H----HHHH-hcCCE
Confidence            4678999999999999999999999998899999998887643 3333     11 1222212  1    1111 14899


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      ||++++.
T Consensus       198 VInaTp~  204 (283)
T 3jyo_A          198 VVNATPM  204 (283)
T ss_dssp             EEECSST
T ss_pred             EEECCCC
Confidence            9999874

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.34  E-value=0.012  Score=55.03  Aligned_cols=92  Identities=18%  Similarity=0.167  Sum_probs=67.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLV  283 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~  283 (385)
                      +|+|+|+|.+|..+++.+.. .. .|.+++++.++.+.++++.....+|..+   ...+.++.. +.|+|++|++.....
T Consensus        18 kilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~d---~~~l~~~~~-~~DvVi~~~p~~~~~   91 (365)
T 3abi_A           18 KVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVDASN---FDKLVEVMK-EFELVIGALPGFLGF   91 (365)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECCTTC---HHHHHHHHT-TCSEEEECCCGGGHH
T ss_pred             EEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEecCC---HHHHHHHHh-CCCEEEEecCCcccc
Confidence            59999999999998887753 45 7888889998888877654333344433   223444443 589999999987656


Q ss_pred             HHHHHHhccCCceEEEecc
Q 016660          284 QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       284 ~~~~~~l~~~~G~~v~~g~  302 (385)
                      ..+..|+..+ -.++.++.
T Consensus        92 ~v~~~~~~~g-~~yvD~s~  109 (365)
T 3abi_A           92 KSIKAAIKSK-VDMVDVSF  109 (365)
T ss_dssp             HHHHHHHHHT-CEEEECCC
T ss_pred             hHHHHHHhcC-cceEeeec
Confidence            7777888886 78888764

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.34  E-value=0.014  Score=52.01  Aligned_cols=78  Identities=19%  Similarity=0.183  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCC-eE--EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v--v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+    ++.+.. ..  .|..+...... +.+..  -++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            5678999987 9999999999989999 899999888766543    233432 22  23333111111 22211  136


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus       106 iD~lvnnAg~  115 (270)
T 3ftp_A          106 LNVLVNNAGI  115 (270)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999883

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.33  E-value=0.024  Score=50.82  Aligned_cols=78  Identities=28%  Similarity=0.325  Sum_probs=48.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHHHHH----Hc-CCCeEEeCCCCCchhHHHHhh------C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGK----RF-GVTEFVNSKNCGDKSIIIDMT------D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~~~----~l-g~~~vv~~~~~~~~~~i~~~~------~  267 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++ ++++.+.+.    +. +....+-.-+......+.++.      -
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            4678999987 9999999999999999 8999887 444443322    22 332222222222222222211      2


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|+++|.
T Consensus       103 g~iD~lv~nAg~  114 (281)
T 3v2h_A          103 GGADILVNNAGV  114 (281)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999885

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.33  E-value=0.015  Score=52.11  Aligned_cols=78  Identities=14%  Similarity=0.176  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHHHhh------CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIIIDMT------DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~~~------~g~  269 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.    +.+....+-.-+......+.+..      .++
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~  121 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN  121 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            4678999987 9999999998888899 7888887776654322    23443221111212222222221      247


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus       122 id~li~~Ag~  131 (285)
T 2c07_A          122 VDILVNNAGI  131 (285)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.32  E-value=0.018  Score=52.01  Aligned_cols=40  Identities=18%  Similarity=0.248  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  241 (385)
                      ++.++||+|+ |++|...++.+...|+ +|++++++.++.+.
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~   57 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKS   57 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4678999987 9999999999988999 89999888776553

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.32  E-value=0.019  Score=51.27  Aligned_cols=78  Identities=14%  Similarity=0.126  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-H----HcCCCeE---EeCCCCCchhH-HHHhhC--
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K----RFGVTEF---VNSKNCGDKSI-IIDMTD--  267 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~----~lg~~~v---v~~~~~~~~~~-i~~~~~--  267 (385)
                      -++.++||.|+ |++|...++.+...|+ +|++++++.++.+.. +    ..|....   .|..+...... +.....  
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~  103 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEF  103 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35789999987 9999999999999999 899998887765432 2    2344322   23333111111 222211  


Q ss_pred             CCccEEEEccC
Q 016660          268 GGADYCFECVG  278 (385)
Q Consensus       268 g~~d~vid~~g  278 (385)
                      +++|++|+++|
T Consensus       104 g~id~lv~nAg  114 (277)
T 4fc7_A          104 GRIDILINCAA  114 (277)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            37999999998

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.32  E-value=0.0057  Score=52.87  Aligned_cols=96  Identities=21%  Similarity=0.197  Sum_probs=67.3

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCC------CEEEEEcCCchHHHHHHHc----C-----CC--eEEeCCCCCchh
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGA------TRIIGVDVISEKFEIGKRF----G-----VT--EFVNSKNCGDKS  260 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~------~~vi~~~~~~~~~~~~~~l----g-----~~--~vv~~~~~~~~~  260 (385)
                      .++++++||-+|+|. |..+..+++..+.      .+|++++.+++..+.+++.    +     ..  .++..+-   ..
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~  156 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG---RK  156 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG---GG
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCc---cc
Confidence            578899999999876 8888888887662      3899999999887776542    2     11  2222111   10


Q ss_pred             HHHHhhC-CCccEEEEccCChHHHHHHHHHhccCCceEEEec
Q 016660          261 IIIDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       261 ~i~~~~~-g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                         .+.. +.||+|+.........+.+.+.|+++ |+++..-
T Consensus       157 ---~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lvi~~  194 (227)
T 1r18_A          157 ---GYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVPV  194 (227)
T ss_dssp             ---CCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             ---CCCcCCCccEEEECCchHHHHHHHHHHhcCC-CEEEEEE
Confidence               1122 37999998777666678899999997 9887643

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.32  E-value=0.019  Score=50.64  Aligned_cols=77  Identities=18%  Similarity=0.180  Sum_probs=48.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH--HHH-HHH---cCCCe-E--EeCCCCCchhH-HHHhh--CC
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEI-GKR---FGVTE-F--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~--~~~-~~~---lg~~~-v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      +.++||.|+ |++|...++.+...|+ +|+++++++++  .+. .++   .+... .  .|..+...... +.+..  -+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG   80 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            568999987 9999999988888899 89988887766  332 222   24332 2  23333111111 11111  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        81 ~iD~lv~nAg~   91 (258)
T 3a28_C           81 GFDVLVNNAGI   91 (258)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999874

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.31  E-value=0.022  Score=50.06  Aligned_cols=79  Identities=15%  Similarity=0.214  Sum_probs=48.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch--HHHHHHHc--CCC-eE--EeCCCC-CchhH-HHHhhC--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRF--GVT-EF--VNSKNC-GDKSI-IIDMTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~--~~~~~~~l--g~~-~v--v~~~~~-~~~~~-i~~~~~--g  268 (385)
                      ++.++||+|+ |++|...++.+...|+++|++++++++  ..+.+.+.  +.. .+  .|..+. ..... +.....  +
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   83 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcC
Confidence            4678999987 999999999999999954888877753  33333333  222 12  233331 11111 222111  3


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        84 ~id~lv~~Ag~   94 (254)
T 1sby_A           84 TVDILINGAGI   94 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            69999999984

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.31  E-value=0.0087  Score=52.42  Aligned_cols=75  Identities=20%  Similarity=0.276  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE--EeCCCCCchhHHHHhh--CCCccEEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF--VNSKNCGDKSIIIDMT--DGGADYCFE  275 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v--v~~~~~~~~~~i~~~~--~g~~d~vid  275 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.++.-...  .|..+   ...+.+..  -+++|++|+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~id~lv~   80 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK---KKQIDQFANEVERLDVLFN   80 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC---HHHHHHHHHHCSCCSEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhccCceEEEeeCCC---HHHHHHHHHHhCCCCEEEE
Confidence            4678999987 9999999999999999 89999888777654443321122  23322   22233322  247999999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      ++|.
T Consensus        81 ~Ag~   84 (246)
T 2ag5_A           81 VAGF   84 (246)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9884

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.31  E-value=0.016  Score=51.83  Aligned_cols=78  Identities=18%  Similarity=0.225  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCe-E--EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+.++||.|+ |++|...++.+...|+ +|++++++.++.+.+ .+++... .  .|..+...... +.+..  .+++|+
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~   82 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDV   82 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            4578999987 9999999999999999 899998888776554 3444332 2  23333111111 11111  136999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        83 lv~~Ag~   89 (281)
T 3m1a_A           83 LVNNAGR   89 (281)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999884

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.31  E-value=0.017  Score=50.01  Aligned_cols=77  Identities=18%  Similarity=0.132  Sum_probs=49.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEE--eCCCCCchhH-HHHhh--CCCccEEE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFV--NSKNCGDKSI-IIDMT--DGGADYCF  274 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv--~~~~~~~~~~-i~~~~--~g~~d~vi  274 (385)
                      +.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. +++....+  |..+...... +....  -+++|++|
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV   83 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            567999987 9999999999989999 8999988877765443 34322222  3333111111 11111  13699999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      +++|.
T Consensus        84 ~~Ag~   88 (234)
T 2ehd_A           84 NNAGV   88 (234)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99873

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.30  E-value=0.03  Score=48.42  Aligned_cols=102  Identities=12%  Similarity=0.167  Sum_probs=68.3

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC--CeE--EeCCCCCchhHHHHhhCCCc
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEF--VNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--~~v--v~~~~~~~~~~i~~~~~g~~  270 (385)
                      ....+.++++||-+|+|. |..+..+++..|..+|++++.+++..+.+++.-.  +.+  +..+. ........+ .+.|
T Consensus        68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~-~~~~~~~~~-~~~~  144 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA-NKPQEYANI-VEKV  144 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT-TCGGGGTTT-SCCE
T ss_pred             cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC-CCccccccc-CccE
Confidence            344677899999999887 8888899998874499999999988877664321  222  21111 110000111 2469


Q ss_pred             cEEEEccCCh---H-HHHHHHHHhccCCceEEEe
Q 016660          271 DYCFECVGLA---S-LVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       271 d~vid~~g~~---~-~~~~~~~~l~~~~G~~v~~  300 (385)
                      |+|+.....+   . .++.+.+.|+++ |+++..
T Consensus       145 D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  177 (230)
T 1fbn_A          145 DVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA  177 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEEEecCChhHHHHHHHHHHHhCCCC-cEEEEE
Confidence            9999665554   3 378889999997 998875

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.30  E-value=0.014  Score=51.14  Aligned_cols=77  Identities=22%  Similarity=0.212  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC-chHHHHH----HHcCCCe-EEeCCCCCchhHHHHhh------C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEIG----KRFGVTE-FVNSKNCGDKSIIIDMT------D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~-~~~~~~~----~~lg~~~-vv~~~~~~~~~~i~~~~------~  267 (385)
                      ++.++||+|+ |.+|...++.+...|+ +|++++++ +++.+.+    +..+... ++. -+......+.+..      -
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~~~~~~~~~~   83 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFA-ADLATSEACQQLVDEFVAKF   83 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEE-CCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEE-CCCCCHHHHHHHHHHHHHHc
Confidence            4678999987 9999999999888999 89988887 6555432    2234321 221 1212222222221      1


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|+++|.
T Consensus        84 g~id~vi~~Ag~   95 (258)
T 3afn_B           84 GGIDVLINNAGG   95 (258)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            369999999884

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.30  E-value=0.024  Score=51.55  Aligned_cols=89  Identities=25%  Similarity=0.259  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.+.+|.|+|.|.+|...++.++.+|+ +|++.+++.++ +.+.++|+..+    +  ..+ +..    ..|+|+-+++.
T Consensus       140 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~~----~--l~e-ll~----~aDvV~l~~p~  206 (307)
T 1wwk_A          140 LEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGKFV----D--LET-LLK----ESDVVTIHVPL  206 (307)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCEEC----C--HHH-HHH----HCSEEEECCCC
T ss_pred             cCCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCcccc----C--HHH-HHh----hCCEEEEecCC
Confidence            357899999999999999999999999 89999988877 56667786421    1  111 111    37999998875


Q ss_pred             hH----HH-HHHHHHhccCCceEEEecc
Q 016660          280 AS----LV-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~----~~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      ..    .+ ...+..++++ +.++.++.
T Consensus       207 ~~~t~~li~~~~l~~mk~g-a~lin~ar  233 (307)
T 1wwk_A          207 VESTYHLINEERLKLMKKT-AILINTSR  233 (307)
T ss_dssp             STTTTTCBCHHHHHHSCTT-CEEEECSC
T ss_pred             ChHHhhhcCHHHHhcCCCC-eEEEECCC
Confidence            32    12 3567888996 88888865

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.30  E-value=0.018  Score=50.85  Aligned_cols=78  Identities=23%  Similarity=0.295  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeEEeCCCCCchhH----HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSI----IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~----i~~~~~--g~  269 (385)
                      +|+++||.|+ +++|.+.++.+...|+ +|+.+++++++.+..    ++.|.+...-.-+-.....    +.+...  |+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   86 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIH   86 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            5788999987 9999999999999999 899999988775533    3455543322222222222    222222  37


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      .|++++++|.
T Consensus        87 iDiLVNNAG~   96 (255)
T 4g81_D           87 VDILINNAGI   96 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999885

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.29  E-value=0.026  Score=49.97  Aligned_cols=78  Identities=18%  Similarity=0.090  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-----cCCC-e-E--EeCCCCCchhH-HHHhh--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVT-E-F--VNSKNCGDKSI-IIDMT--D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-----lg~~-~-v--v~~~~~~~~~~-i~~~~--~  267 (385)
                      .+.++||.|+ +++|...++.+...|+ +|+++++++++.+.+.+     .+.. . .  .|..+...... +....  -
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4788999987 9999999999999999 89999998877654321     3332 2 1  23333111111 22211  1


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|+++|.
T Consensus        86 g~id~lvnnAg~   97 (265)
T 3lf2_A           86 GCASILVNNAGQ   97 (265)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            369999999984

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.28  E-value=0.012  Score=52.20  Aligned_cols=78  Identities=18%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcC--CCeEEeCCCCCchhHHHHhhC--CCcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFG--VTEFVNSKNCGDKSIIIDMTD--GGAD  271 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg--~~~vv~~~~~~~~~~i~~~~~--g~~d  271 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+...    +.+  ........+......+.+...  +++|
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            4678999987 9999999999989999 8999998877654332    222  211111122222333333322  3799


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++|+++|.
T Consensus        88 ~lv~nAg~   95 (267)
T 3t4x_A           88 ILINNLGI   95 (267)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999884

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.27  E-value=0.016  Score=51.01  Aligned_cols=78  Identities=21%  Similarity=0.143  Sum_probs=48.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHHHH----HHcCCCe-EE--eCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVTE-FV--NSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~~----~~lg~~~-vv--~~~~~~~~~~-i~~~~--~g  268 (385)
                      ++.++||+|+ |++|...++.+...|+ +|+++++ ++++.+.+    ++.+... ++  |..+...... +.+..  -+
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4678999987 9999999998888999 8888888 66554432    2234322 22  3222111111 22111  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        85 ~id~li~~Ag~   95 (261)
T 1gee_A           85 KLDVMINNAGL   95 (261)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999873

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.27  E-value=0.0094  Score=51.81  Aligned_cols=97  Identities=12%  Similarity=0.068  Sum_probs=62.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .+|||+|+ |.+|...++.+...| + +|+++++++++.+.+...++. ++. -+......+.+... ++|+||.+.+..
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~~-~~~-~Dl~d~~~~~~~~~-~~D~vv~~a~~~   99 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNSQ-IIM-GDVLNHAALKQAMQ-GQDIVYANLTGE   99 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTEE-EEE-CCTTCHHHHHHHHT-TCSEEEEECCST
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCcE-EEE-ecCCCHHHHHHHhc-CCCEEEEcCCCC
Confidence            57999997 999999999999999 7 899998887765432222222 221 12122333444443 589999998875


Q ss_pred             HH---HHHHHHHhccC-CceEEEeccC
Q 016660          281 SL---VQEAYACCRKG-WGKTIVLGVD  303 (385)
Q Consensus       281 ~~---~~~~~~~l~~~-~G~~v~~g~~  303 (385)
                      ..   .+.+++.++.. .+++|.++..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~iV~iSS~  126 (236)
T 3qvo_A          100 DLDIQANSVIAAMKACDVKRLIFVLSL  126 (236)
T ss_dssp             THHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             chhHHHHHHHHHHHHcCCCEEEEEecc
Confidence            31   34455555442 2588888763

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.26  E-value=0.015  Score=51.20  Aligned_cols=76  Identities=18%  Similarity=0.316  Sum_probs=47.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhh-----CCCccEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMT-----DGGADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~-----~g~~d~vi  274 (385)
                      .+.++||.|+ +++|...++.+...|+ +|+++++..+  +..++++....+-.-+......+..+.     -+++|++|
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv   84 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGE--DVVADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVV   84 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCH--HHHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchH--HHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            4678999987 9999999998888999 8888887544  334455543222112212222222211     24799999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      +++|.
T Consensus        85 ~nAg~   89 (257)
T 3tl3_A           85 NCAGT   89 (257)
T ss_dssp             ECGGG
T ss_pred             ECCCC
Confidence            99984

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.25  E-value=0.023  Score=50.81  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCC---Ce-E--EeCCCCCchhH-HHHhh--
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGV---TE-F--VNSKNCGDKSI-IIDMT--  266 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~---~~-v--v~~~~~~~~~~-i~~~~--  266 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+    ++.+.   .. .  .|..+...... +....  
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4788999987 9999999999989999 899999888765533    23343   11 1  23332111111 22211  


Q ss_pred             CCCccEEEEccCC
Q 016660          267 DGGADYCFECVGL  279 (385)
Q Consensus       267 ~g~~d~vid~~g~  279 (385)
                      -+++|++|+++|.
T Consensus        89 ~g~id~lv~nAg~  101 (281)
T 3svt_A           89 HGRLHGVVHCAGG  101 (281)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1369999999985

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.25  E-value=0.014  Score=54.28  Aligned_cols=48  Identities=23%  Similarity=0.285  Sum_probs=41.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH-HHHHcCCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVT  248 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~  248 (385)
                      -+|.+|+|.|.|.+|..+++.+...|+ +|++++++.++.+ +++++|++
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            578999999999999999999999999 8999999888766 45566764

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=96.25  E-value=0.024  Score=52.31  Aligned_cols=133  Identities=14%  Similarity=0.082  Sum_probs=80.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCEEE-EEcCCchHHHH-HHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~-G~~~vi-~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      +|.|+|+|.+|...+..++.. ++ .++ +.++++++.+. ++++|+ .++  .+      ..++... .+|+|+.|+..
T Consensus         6 rvgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~g~-~~~--~~------~~~~l~~~~~D~V~i~tp~   75 (344)
T 3euw_A            6 RIALFGAGRIGHVHAANIAANPDL-ELVVIADPFIEGAQRLAEANGA-EAV--AS------PDEVFARDDIDGIVIGSPT   75 (344)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHTTTC-EEE--SS------HHHHTTCSCCCEEEECSCG
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHcCC-cee--CC------HHHHhcCCCCCEEEEeCCc
Confidence            689999999999888777765 67 555 66777777554 556773 232  22      3344444 79999999999


Q ss_pred             hHHHHHHHHHhccCCceEEEeccCCCCCccc-ccHHHHhh-cCcEEEEeeecCCCCCCcHHHHHHHHHcCCCC
Q 016660          280 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVLH-SGKILMGSLFGGLKAKSDIPILLKRYMDKELE  350 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~  350 (385)
                      ....+.+..++..  |+-|++.......... ..+..... ++..+.-..  ...+...+..+.+++++|.+-
T Consensus        76 ~~h~~~~~~al~~--gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~k~~i~~g~iG  144 (344)
T 3euw_A           76 STHVDLITRAVER--GIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGF--NRRFDPSFAAINARVANQEIG  144 (344)
T ss_dssp             GGHHHHHHHHHHT--TCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECC--GGGGCHHHHHHHHHHHTTTTS
T ss_pred             hhhHHHHHHHHHc--CCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecc--hhhcCHHHHHHHHHHhcCCCC
Confidence            8878888888887  4555554321111000 11111122 233333221  223335678888889988653

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.25  E-value=0.019  Score=50.00  Aligned_cols=78  Identities=22%  Similarity=0.259  Sum_probs=47.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCCchHHHHH----HHcCCCeEEeCCCCCchhHHHHhh------CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTEFVNSKNCGDKSIIIDMT------DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~~~~------~g  268 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++ .+++++.+.+    ++.+....+-.-+......+.+..      -+
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG   82 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4678999987 9999999999999999 78887 5665554332    233543221111212222222221      13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        83 ~~d~vi~~Ag~   93 (247)
T 2hq1_A           83 RIDILVNNAGI   93 (247)
T ss_dssp             CCCEEEECC--
T ss_pred             CCCEEEECCCC
Confidence            79999999875

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.24  E-value=0.071  Score=48.99  Aligned_cols=76  Identities=22%  Similarity=0.273  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch----HHHHHHHc------CCCeEEeCCCCCchhHHHHhhCCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE----KFEIGKRF------GVTEFVNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~----~~~~~~~l------g~~~vv~~~~~~~~~~i~~~~~g~  269 (385)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++...    ..+.+..+      .--.++.. +......+.+... +
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~d~~~~~~~~~-~  100 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG-DIRDLTTCEQVMK-G  100 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEEC-CTTCHHHHHHHTT-T
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEc-cCCCHHHHHHHhc-C
Confidence            4678999997 9999999999999998 8999887543    23333332      21122222 2122333445444 7


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|+||++++.
T Consensus       101 ~d~Vih~A~~  110 (351)
T 3ruf_A          101 VDHVLHQAAL  110 (351)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999985

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.24  E-value=0.023  Score=48.28  Aligned_cols=97  Identities=16%  Similarity=0.178  Sum_probs=68.1

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFEC  276 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~  276 (385)
                      .+.++.+||-+|+|. |..+..+++. |. +|++++.+++.++.+++.+...+ +...+  ... .  ...+.||+|+..
T Consensus        43 ~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d--~~~-~--~~~~~~D~v~~~  114 (218)
T 3ou2_A           43 AGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQD--LFD-W--TPDRQWDAVFFA  114 (218)
T ss_dssp             TTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEECC--TTS-C--CCSSCEEEEEEE
T ss_pred             cCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEecc--ccc-C--CCCCceeEEEEe
Confidence            467888999999876 7777777777 77 99999999999999988664322 11111  111 1  223479999864


Q ss_pred             cCC--------hHHHHHHHHHhccCCceEEEeccC
Q 016660          277 VGL--------ASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       277 ~g~--------~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ..-        ...++.+.+.|+++ |.+++....
T Consensus       115 ~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  148 (218)
T 3ou2_A          115 HWLAHVPDDRFEAFWESVRSAVAPG-GVVEFVDVT  148 (218)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred             chhhcCCHHHHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence            422        34578889999997 998877543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.24  E-value=0.014  Score=52.16  Aligned_cols=78  Identities=23%  Similarity=0.140  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeE---EeCCCCCchhH-HHHhh-CCCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSI-IIDMT-DGGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v---v~~~~~~~~~~-i~~~~-~g~~  270 (385)
                      .+.++||.|+ +++|...++.+...|+ +|+++++++++.+.+    ++.+....   .|..+...... +.... .+++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i  110 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPV  110 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            5788999987 9999999999999999 899998887664433    22344322   23333222222 11111 1579


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|+++|.
T Consensus       111 D~lvnnAg~  119 (275)
T 4imr_A          111 DILVINASA  119 (275)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.24  E-value=0.02  Score=50.77  Aligned_cols=78  Identities=15%  Similarity=0.150  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCe-E--EeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-v--v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++... .  .|..+...... +....  -+.+|+
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   83 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   83 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcE
Confidence            4678999987 9999999999999999 899999988776654 3444221 2  23333111111 21111  136899


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus        84 lvnnAg~   90 (263)
T 2a4k_A           84 VAHFAGV   90 (263)
T ss_dssp             EEEGGGG
T ss_pred             EEECCCC
Confidence            9999874

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.24  E-value=0.016  Score=50.60  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeE---EeCCCCCchhH-HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~v---v~~~~~~~~~~-i~~~~--~g~  269 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+.+++++++.+.+.    +.+....   .|..+...... +.+..  .++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLA   82 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4678999987 9999999998888999 8999988887665433    3354322   23333111111 22221  236


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        83 id~li~~Ag~   92 (247)
T 3lyl_A           83 IDILVNNAGI   92 (247)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.23  E-value=0.015  Score=50.64  Aligned_cols=74  Identities=18%  Similarity=0.184  Sum_probs=50.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe-EEeCCCCCchhH-HHHhh--CCCccEEEEc
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSI-IIDMT--DGGADYCFEC  276 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vv~~~~~~~~~~-i~~~~--~g~~d~vid~  276 (385)
                      +.++||.|+ |++|...++.+...|+ +|+++++++++  ..+++++.. ..|..+ ..... +.+..  -+++|++|++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~g~id~lv~~   77 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGAVPLPTDLEK-DDPKGLVKRALEALGGLHVLVHA   77 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTCEEEECCTTT-SCHHHHHHHHHHHHTSCCEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCcEEEecCCch-HHHHHHHHHHHHHcCCCCEEEEC
Confidence            468999987 9999999999999999 89999888776  344456322 234433 22222 22221  1369999999


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      +|.
T Consensus        78 Ag~   80 (239)
T 2ekp_A           78 AAV   80 (239)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            874

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.23  E-value=0.026  Score=50.55  Aligned_cols=34  Identities=29%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .+.++||+|+ +++|...++.+...|+ +|++++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence            5788999987 9999999999999999 89888765

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.22  E-value=0.028  Score=49.36  Aligned_cols=42  Identities=21%  Similarity=0.169  Sum_probs=35.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  242 (385)
                      -.+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   52 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQV   52 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            45789999987 9999999999989999 899999988776543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.22  E-value=0.027  Score=50.27  Aligned_cols=79  Identities=20%  Similarity=0.245  Sum_probs=50.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-------------CchHHHHH----HHcCCCeEEeCCCCCchhH
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-------------ISEKFEIG----KRFGVTEFVNSKNCGDKSI  261 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-------------~~~~~~~~----~~lg~~~vv~~~~~~~~~~  261 (385)
                      -.+.++||.|+ |++|...++.+...|+ +|+++++             ++++.+.+    ++.|....+-.-+......
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~   91 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA   91 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence            46789999987 9999999999999999 8888876             44444432    2344432221122122222


Q ss_pred             HHHhh------CCCccEEEEccCC
Q 016660          262 IIDMT------DGGADYCFECVGL  279 (385)
Q Consensus       262 i~~~~------~g~~d~vid~~g~  279 (385)
                      +.++.      -+++|++|+++|.
T Consensus        92 v~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           92 LRELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            22221      1379999999884

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.22  E-value=0.041  Score=48.42  Aligned_cols=41  Identities=20%  Similarity=0.162  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  242 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQET   47 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            4678999987 9999999998888999 899998888776543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.20  E-value=0.056  Score=49.24  Aligned_cols=91  Identities=20%  Similarity=0.280  Sum_probs=64.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHHcCCC-eEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~lg~~-~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .+|.|+|.|.+|...++.++..|+. .|++.++++++.+.+.++|+. ......+        ++.-...|+||-|+...
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~--------~~~~~~aDvVilavp~~  105 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA--------KVEDFSPDFVMLSSPVR  105 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTT--------GGGGGCCSEEEECSCGG
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHH--------HHhhccCCEEEEeCCHH
Confidence            5799999999999999999988874 799999999999999988863 2221111        10012589999999876


Q ss_pred             HH---HHHHHHHhccCCceEEEecc
Q 016660          281 SL---VQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       281 ~~---~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ..   +++....++++ ..++.++.
T Consensus       106 ~~~~vl~~l~~~l~~~-~iv~d~~S  129 (314)
T 3ggo_A          106 TFREIAKKLSYILSED-ATVTDQGS  129 (314)
T ss_dssp             GHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred             HHHHHHHHHhhccCCC-cEEEECCC
Confidence            42   33444556664 55555553

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.20  E-value=0.018  Score=51.42  Aligned_cols=75  Identities=20%  Similarity=0.259  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCe-E--EeCCCCCchhH-HHHhhC-CCccEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSI-IIDMTD-GGADYC  273 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-v--v~~~~~~~~~~-i~~~~~-g~~d~v  273 (385)
                      .+.++||+|+ |++|...++.+...|+ +|++++++.++.+.+ ++++... +  .|..+...... +..... ++.|++
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~l  107 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYA  107 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeE
Confidence            5678999987 9999999999888999 899999988876654 4455432 2  23333111111 222211 268999


Q ss_pred             EEc
Q 016660          274 FEC  276 (385)
Q Consensus       274 id~  276 (385)
                      |.+
T Consensus       108 v~~  110 (281)
T 3ppi_A          108 VVA  110 (281)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            988

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.20  E-value=0.022  Score=52.07  Aligned_cols=35  Identities=26%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      -.+.++||.|+ |++|...++.+...|+ +|++++++
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~   79 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLC   79 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence            35788999987 9999999999999999 88888765

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.20  E-value=0.0068  Score=52.27  Aligned_cols=85  Identities=12%  Similarity=0.107  Sum_probs=56.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhC--CCccEEEEcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTD--GGADYCFECV  277 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~--g~~d~vid~~  277 (385)
                      .+.++||.|+ |++|...++.+...|+ +|++++++++             .|..+   ...+.++..  +++|++|+++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~-------------~D~~~---~~~v~~~~~~~g~id~lv~nA   67 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG-------------LDISD---EKSVYHYFETIGAFDHLIVTA   67 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT-------------CCTTC---HHHHHHHHHHHCSEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc-------------cCCCC---HHHHHHHHHHhCCCCEEEECC
Confidence            4678999987 9999999998888899 8999877654             23322   222222222  4689999888


Q ss_pred             CCh--------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          278 GLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       278 g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      |..                          ...+.+++.++++ |+++.++..
T Consensus        68 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~~sS~  118 (223)
T 3uce_A           68 GSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQG-GSITLTSGM  118 (223)
T ss_dssp             CCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEE-EEEEEECCG
T ss_pred             CCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCC-eEEEEecch
Confidence            742                          1123445566675 899988754

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.19  E-value=0.021  Score=51.57  Aligned_cols=77  Identities=10%  Similarity=0.119  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc----CCCe-E--EeCCCCCchhH-HHHh--hCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVTE-F--VNSKNCGDKSI-IIDM--TDG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l----g~~~-v--v~~~~~~~~~~-i~~~--~~g  268 (385)
                      .+.++||+|+ |++|...+..+...|+ +|+++++++++.+.+. ++    +... +  .|..+...... +...  ..+
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  103 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  103 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            4678999987 9999999999999999 8999988877655332 22    4332 2  23332111111 1111  123


Q ss_pred             CccEEEEccC
Q 016660          269 GADYCFECVG  278 (385)
Q Consensus       269 ~~d~vid~~g  278 (385)
                      .+|++|+++|
T Consensus       104 ~id~li~~Ag  113 (302)
T 1w6u_A          104 HPNIVINNAA  113 (302)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899999998

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.19  E-value=0.02  Score=51.24  Aligned_cols=78  Identities=23%  Similarity=0.164  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-H---cCC---C-eE--EeCCCCCchhH-HHHhh--
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R---FGV---T-EF--VNSKNCGDKSI-IIDMT--  266 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~---lg~---~-~v--v~~~~~~~~~~-i~~~~--  266 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. +   .+.   . .+  .|..+...... +....  
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            4678999987 9999999999988999 8999999887665432 2   232   2 12  23333111111 22111  


Q ss_pred             CCCccEEEEccCC
Q 016660          267 DGGADYCFECVGL  279 (385)
Q Consensus       267 ~g~~d~vid~~g~  279 (385)
                      -+++|++|+++|.
T Consensus        84 ~g~iD~lv~nAg~   96 (280)
T 1xkq_A           84 FGKIDVLVNNAGA   96 (280)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1369999999873

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.19  E-value=0.019  Score=52.59  Aligned_cols=79  Identities=24%  Similarity=0.254  Sum_probs=50.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC----------chHHH----HHHHcCCCeEEeCCCCCchhHHHH
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI----------SEKFE----IGKRFGVTEFVNSKNCGDKSIIID  264 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~----------~~~~~----~~~~lg~~~vv~~~~~~~~~~i~~  264 (385)
                      -.+.++||+|+ |++|...++.+...|+ +|++++++          .++.+    .+++.|....+..-+......+.+
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  103 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAG  103 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHH
Confidence            35788999987 9999999998888999 89998775          33332    233345433332333223332222


Q ss_pred             hh------CCCccEEEEccCC
Q 016660          265 MT------DGGADYCFECVGL  279 (385)
Q Consensus       265 ~~------~g~~d~vid~~g~  279 (385)
                      +.      -+++|++|+++|.
T Consensus       104 ~~~~~~~~~g~iD~lv~nAg~  124 (322)
T 3qlj_A          104 LIQTAVETFGGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHHHSCCCEEECCCCC
T ss_pred             HHHHHHHHcCCCCEEEECCCC
Confidence            21      1379999999984

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.19  E-value=0.054  Score=43.48  Aligned_cols=77  Identities=5%  Similarity=0.072  Sum_probs=51.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC-chHHHHHHH---cCCCeEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI-SEKFEIGKR---FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~-~~~~~~~~~---lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      ..+|+|+|+|.+|...++.+...|. .|++++++ +++.+.+..   .|.. ++.-+. .....+.+..-.++|+|+-++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~~-~i~gd~-~~~~~l~~a~i~~ad~vi~~~   79 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNAD-VIPGDS-NDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCE-EEESCT-TSHHHHHHHTTTTCSEEEECS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCCe-EEEcCC-CCHHHHHHcChhhCCEEEEec
Confidence            4568999999999999999999998 78888886 455544432   2443 333222 222223333223799999999


Q ss_pred             CChH
Q 016660          278 GLAS  281 (385)
Q Consensus       278 g~~~  281 (385)
                      +...
T Consensus        80 ~~d~   83 (153)
T 1id1_A           80 DNDA   83 (153)
T ss_dssp             SCHH
T ss_pred             CChH
Confidence            8875

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.18  E-value=0.021  Score=50.56  Aligned_cols=78  Identities=19%  Similarity=0.177  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcC-CC-eEE--eCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFG-VT-EFV--NSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg-~~-~vv--~~~~~~~~~~-i~~~~--~g  268 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+.+++++++.+.+.    +.+ .. ..+  |..+...... +....  -+
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5788999987 9999999999999999 8999999887765432    233 22 122  3332111111 11111  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        88 ~id~lvnnAg~   98 (262)
T 3pk0_A           88 GIDVVCANAGV   98 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999883

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.18  E-value=0.03  Score=51.77  Aligned_cols=133  Identities=9%  Similarity=0.028  Sum_probs=82.0

Q ss_pred             EEEEEcCCHHHHH-HHHHHHH-cCCCEEE-EEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccC
Q 016660          204 TVVIFGLGSIGLA-VAEGARL-CGATRII-GVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG  278 (385)
Q Consensus       204 ~VlI~G~g~vG~~-ai~la~~-~G~~~vi-~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g  278 (385)
                      +|-|+|+|.+|.. .+..++. -++ +++ ++++++++.+ +++++|+..+++  +      ..++... .+|+|+-|++
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~g~~~~y~--d------~~ell~~~~iDaV~I~tP   95 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENC-VVTAIASRDLTRAREMADRFSVPHAFG--S------YEEMLASDVIDAVYIPLP   95 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSE-EEEEEECSSHHHHHHHHHHHTCSEEES--S------HHHHHHCSSCSEEEECSC
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHHHHcCCCeeeC--C------HHHHhcCCCCCEEEEeCC
Confidence            6899999999975 4555554 477 555 5566666654 567789876653  2      2333333 7999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCCCCCcccc-cHHHHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFEVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      .....+.+..++..  |+-|++-.......... .+.... .++..+.-..  .+.+...+..+-+++++|.+
T Consensus        96 ~~~H~~~~~~al~a--GkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~--~~R~~p~~~~~k~~i~~G~i  164 (350)
T 4had_A           96 TSQHIEWSIKAADA--GKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAY--MITYSPVWQKVRSLIDEGAI  164 (350)
T ss_dssp             GGGHHHHHHHHHHT--TCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECC--GGGGSHHHHHHHHHHHTTTT
T ss_pred             CchhHHHHHHHHhc--CCEEEEeCCcccchhhHHHHHHHHHHcCCceeEee--eeecCHHHHHhhHhhhcCCC
Confidence            88878889999988  67777754321111111 111111 2344443221  22334567888889998865

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.17  E-value=0.008  Score=52.78  Aligned_cols=100  Identities=22%  Similarity=0.255  Sum_probs=69.0

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC---eEEeCCCCCchhHHHHh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSIIIDM  265 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vv~~~~~~~~~~i~~~  265 (385)
                      +.....+.++.+||-+|+|. |..+..+++..|. +|++++.+++.++.+++    .|..   .++..+-   .. . ..
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~---~~-~-~~  100 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---AG-Y-VA  100 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---TT-C-CC
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh---Hh-C-Cc
Confidence            34556788999999999877 7888899988888 89999999988777654    3432   1222111   11 0 11


Q ss_pred             hCCCccEEEEcc------CChHHHHHHHHHhccCCceEEEec
Q 016660          266 TDGGADYCFECV------GLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       266 ~~g~~d~vid~~------g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                       ++.||+|+...      .....++++.+.|+++ |++++..
T Consensus       101 -~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~~~~  140 (256)
T 1nkv_A          101 -NEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE  140 (256)
T ss_dssp             -SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             -CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC-eEEEEec
Confidence             34799998521      2345578899999997 9888754

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.17  E-value=0.028  Score=47.17  Aligned_cols=97  Identities=16%  Similarity=0.161  Sum_probs=59.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      .+|||+|+ |.+|...++.+...|+ +|+++++++++.+.....++ +++.. +......+.+... ++|+||++++...
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~-D~~~~~~~~~~~~-~~d~vi~~a~~~~   79 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPA-HVVVG-DVLQAADVDKTVA-GQDAVIVLLGTRN   79 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCS-EEEES-CTTSHHHHHHHHT-TCSEEEECCCCTT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccccCCce-EEEEe-cCCCHHHHHHHHc-CCCEEEECccCCC
Confidence            57999997 9999999999998998 89999888776432211122 22222 2122333444443 5899999998532


Q ss_pred             ----------HHHHHHHHhcc-CCceEEEeccC
Q 016660          282 ----------LVQEAYACCRK-GWGKTIVLGVD  303 (385)
Q Consensus       282 ----------~~~~~~~~l~~-~~G~~v~~g~~  303 (385)
                                ....+++.+.+ +.++++.++..
T Consensus        80 ~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~  112 (206)
T 1hdo_A           80 DLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (206)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             CCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence                      12333444433 22578877653

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.17  E-value=0.02  Score=51.77  Aligned_cols=79  Identities=14%  Similarity=0.084  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HH---cCC-C-eE--EeCCCC-CchhHH-HHhh--
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KR---FGV-T-EF--VNSKNC-GDKSII-IDMT--  266 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~---lg~-~-~v--v~~~~~-~~~~~i-~~~~--  266 (385)
                      ..+.++||+|+ |++|...++.+...|+ +|++++++.++.+.+ ++   .+. . .+  .|..+. .....+ ....  
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            35788999997 9999999998888999 899999988765432 22   232 2 12  233331 111111 1111  


Q ss_pred             CCCccEEEEccCC
Q 016660          267 DGGADYCFECVGL  279 (385)
Q Consensus       267 ~g~~d~vid~~g~  279 (385)
                      .+++|++|+++|.
T Consensus        89 ~g~iD~lv~nAg~  101 (311)
T 3o26_A           89 FGKLDILVNNAGV  101 (311)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            1379999999985

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.17  E-value=0.021  Score=55.19  Aligned_cols=91  Identities=19%  Similarity=0.188  Sum_probs=68.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.|.+|.|+|.|.+|..+++.++.+|+ +|++++++..+...+...|.. +.   +      +.++.. ..|+|+-+++.
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~-~~---~------l~ell~-~aDiVi~~~~t  342 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYR-VV---T------MEYAAD-KADIFVTATGN  342 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCE-EC---C------HHHHTT-TCSEEEECSSS
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCE-eC---C------HHHHHh-cCCEEEECCCc
Confidence            578999999999999999999999999 899999888765444455653 21   1      222222 58999999876


Q ss_pred             hHHH-HHHHHHhccCCceEEEeccC
Q 016660          280 ASLV-QEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       280 ~~~~-~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ...+ .+.+..|+++ ..++.+|..
T Consensus       343 ~~lI~~~~l~~MK~g-AilINvgrg  366 (494)
T 3d64_A          343 YHVINHDHMKAMRHN-AIVCNIGHF  366 (494)
T ss_dssp             SCSBCHHHHHHCCTT-EEEEECSSS
T ss_pred             ccccCHHHHhhCCCC-cEEEEcCCC
Confidence            6544 4678899997 888888864

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.15  E-value=0.015  Score=51.50  Aligned_cols=78  Identities=13%  Similarity=0.022  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH-HHHHHHcCCCeE-EeCCCCCchhH-HHHhh--CCCccEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGVTEF-VNSKNCGDKSI-IIDMT--DGGADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~lg~~~v-v~~~~~~~~~~-i~~~~--~g~~d~vi  274 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++ .+.+++.++..+ .|..+...... +....  -+++|++|
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv  104 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVV  104 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            4678999987 9999999999988999 78888887765 344555665322 23333111111 22111  24799999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      +++|.
T Consensus       105 ~nAg~  109 (260)
T 3gem_A          105 HNASE  109 (260)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99884

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.15  E-value=0.025  Score=49.94  Aligned_cols=78  Identities=18%  Similarity=0.144  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCCchHHHHHH----HcCCCeEEeCCCCCchhHHHH----hh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIGK----RFGVTEFVNSKNCGDKSIIID----MT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~----~~--~g  268 (385)
                      ++.++||.|+ |++|...++.+...|+ +|+++ .+++++.+.+.    +.+....+-.-+......+.+    ..  -+
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG   81 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5778999987 9999999999999999 77775 77776654432    335432221122222222222    11  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        82 ~id~lv~nAg~   92 (258)
T 3oid_A           82 RLDVFVNNAAS   92 (258)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999999973

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.15  E-value=0.024  Score=50.42  Aligned_cols=78  Identities=23%  Similarity=0.277  Sum_probs=48.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC-chHHHH----HHHcCCCeEEeCCCCCchhHHH----Hhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEI----GKRFGVTEFVNSKNCGDKSIII----DMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~-~~~~~~----~~~lg~~~vv~~~~~~~~~~i~----~~~--~g  268 (385)
                      .+.++||.|+ |++|...++.+...|+ +|++++++ ++..+.    +++.+....+-.-+......+.    +..  .+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  106 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG  106 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5788999987 9999999998889999 78888774 333332    2334543222112212222222    221  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus       107 ~id~li~nAg~  117 (271)
T 4iin_A          107 GLSYLVNNAGV  117 (271)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999885

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.14  E-value=0.034  Score=49.72  Aligned_cols=79  Identities=15%  Similarity=0.206  Sum_probs=49.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHHH----HHHcCCCeE---EeCCCCCchhH-HHHhhC--
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI----GKRFGVTEF---VNSKNCGDKSI-IIDMTD--  267 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~----~~~lg~~~v---v~~~~~~~~~~-i~~~~~--  267 (385)
                      ..+.++||.|+ |++|...++.+...|+ +|+++++ ++++.+.    +++.|....   .|..+...... +.....  
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35788999987 9999999999999999 7888874 5554432    233454322   24433222222 222211  


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|+++|.
T Consensus       106 g~iD~lvnnAg~  117 (280)
T 4da9_A          106 GRIDCLVNNAGI  117 (280)
T ss_dssp             SCCCEEEEECC-
T ss_pred             CCCCEEEECCCc
Confidence            369999999985

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.14  E-value=0.034  Score=49.56  Aligned_cols=33  Identities=36%  Similarity=0.371  Sum_probs=29.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~  234 (385)
                      .+.++||.|+ +++|...++.+...|+ +|+++++
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r   43 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDI   43 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEec
Confidence            5788999987 9999999999999999 8988876

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=96.13  E-value=0.021  Score=52.81  Aligned_cols=134  Identities=16%  Similarity=0.241  Sum_probs=80.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCEEE-EEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~-G~~~vi-~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      +|.|+|+|.+|...+..++.. ++ .++ +.++++++.+ +++++|...+++  +      ..++... .+|+|+.|++.
T Consensus         4 rvgiIG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~~~~~--~------~~~ll~~~~~D~V~i~tp~   74 (344)
T 3ezy_A            4 RIGVIGLGRIGTIHAENLKMIDDA-ILYAISDVREDRLREMKEKLGVEKAYK--D------PHELIEDPNVDAVLVCSST   74 (344)
T ss_dssp             EEEEECCSHHHHHHHHHGGGSTTE-EEEEEECSCHHHHHHHHHHHTCSEEES--S------HHHHHHCTTCCEEEECSCG
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHhCCCceeC--C------HHHHhcCCCCCEEEEcCCC
Confidence            588999999998877766544 66 555 5677777755 456677654442  2      2233333 79999999998


Q ss_pred             hHHHHHHHHHhccCCceEEEeccCCCCCccc-ccHHHHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCC
Q 016660          280 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  350 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~  350 (385)
                      ....+.+..++..  |+-|++.......... ..+..+. .++..+.-..  .+.+...+..+.+++++|.+-
T Consensus        75 ~~h~~~~~~al~~--gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~--~~R~~p~~~~~k~~i~~G~iG  143 (344)
T 3ezy_A           75 NTHSELVIACAKA--KKHVFCEKPLSLNLADVDRMIEETKKADVILFTGF--NRRFDRNFKKLKEAVENGTIG  143 (344)
T ss_dssp             GGHHHHHHHHHHT--TCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEEC--GGGGCHHHHHHHHHHHTTTTS
T ss_pred             cchHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEee--cccCCHHHHHHHHHHHcCCCC
Confidence            8878888888887  4555564321111000 1111121 2344443221  233345688888899988653

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.13  E-value=0.027  Score=49.09  Aligned_cols=78  Identities=17%  Similarity=0.168  Sum_probs=51.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCC--CeEE--eCCCCCchhHHH----Hhh
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--TEFV--NSKNCGDKSIII----DMT  266 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~--~~vv--~~~~~~~~~~i~----~~~  266 (385)
                      -++.++||.|+ |++|...++.+...|+ +|+.+++++++.+.+.    +.+.  ..++  +.+. .....+.    ...
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~-~~~~~~~~~~~~~~   89 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLEN-ATAQQYRELAARVE   89 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTT-CCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEecccc-CCHHHHHHHHHHHH
Confidence            35788999987 9999999999999999 8999999887765433    3332  1222  2211 1222222    111


Q ss_pred             --CCCccEEEEccCC
Q 016660          267 --DGGADYCFECVGL  279 (385)
Q Consensus       267 --~g~~d~vid~~g~  279 (385)
                        -+++|++|+++|.
T Consensus        90 ~~~g~id~lv~nAg~  104 (247)
T 3i1j_A           90 HEFGRLDGLLHNASI  104 (247)
T ss_dssp             HHHSCCSEEEECCCC
T ss_pred             HhCCCCCEEEECCcc
Confidence              1379999999884

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.12  E-value=0.023  Score=51.04  Aligned_cols=78  Identities=18%  Similarity=0.074  Sum_probs=49.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc-hHHHHH-H----HcCCCe-E--EeCCCCCc-hhHHHHhh---
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIG-K----RFGVTE-F--VNSKNCGD-KSIIIDMT---  266 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~~~-~----~lg~~~-v--v~~~~~~~-~~~i~~~~---  266 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++ ++.+.+ +    +.+... +  .|..+... ...+.++.   
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~  100 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC  100 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence            4678999987 9999999998888999 898888887 554432 2    234332 2  23222000 22222211   


Q ss_pred             ---CCCccEEEEccCC
Q 016660          267 ---DGGADYCFECVGL  279 (385)
Q Consensus       267 ---~g~~d~vid~~g~  279 (385)
                         -+++|++|+++|.
T Consensus       101 ~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A          101 FRAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCC
Confidence               1379999999873

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.11  E-value=0.026  Score=49.38  Aligned_cols=78  Identities=19%  Similarity=0.225  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeE-EeCCCCCchhH-HHHhh--CCCccEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF-VNSKNCGDKSI-IIDMT--DGGADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~v-v~~~~~~~~~~-i~~~~--~g~~d~vi  274 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+ +++|+..+ .|..+...... +....  -+++|++|
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv   82 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999987 9999999999999999 899998888776644 34453222 23333111111 21111  13699999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      +++|.
T Consensus        83 n~Ag~   87 (245)
T 1uls_A           83 HYAGI   87 (245)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99984

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.11  E-value=0.059  Score=46.41  Aligned_cols=108  Identities=15%  Similarity=0.071  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch-HHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~-~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      .+.+|||+|+|.+|...++.+...|+ .|++++.... .++.+.+.+--..+ ..+  +.+   ... .++|+||-+.+.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~l~~~~~i~~i-~~~--~~~---~dL-~~adLVIaAT~d  101 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSAEINEWEAKGQLRVK-RKK--VGE---EDL-LNVFFIVVATND  101 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCHHHHHHHHTTSCEEE-CSC--CCG---GGS-SSCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHcCCcEEE-ECC--CCH---hHh-CCCCEEEECCCC
Confidence            46789999999999999999999999 7777765432 23322222322222 122  111   111 269999999998


Q ss_pred             hHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcC
Q 016660          280 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSG  320 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  320 (385)
                      +. ++..+...++. |..|.....+  ..-++.+..++.++
T Consensus       102 ~~-~N~~I~~~ak~-gi~VNvvD~p--~~~~f~~Paiv~rg  138 (223)
T 3dfz_A          102 QA-VNKFVKQHIKN-DQLVNMASSF--SDGNIQIPAQFSRG  138 (223)
T ss_dssp             TH-HHHHHHHHSCT-TCEEEC-------CCSEECCEEEEET
T ss_pred             HH-HHHHHHHHHhC-CCEEEEeCCc--ccCeEEEeeEEEeC
Confidence            88 66666666665 8888776543  22333333444544

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.11  E-value=0.038  Score=48.43  Aligned_cols=74  Identities=22%  Similarity=0.139  Sum_probs=49.4

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE-eCCCCCchhHHHHhhCCCccEEEEc
Q 016660          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSIIIDMTDGGADYCFEC  276 (385)
Q Consensus       199 ~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv-~~~~~~~~~~i~~~~~g~~d~vid~  276 (385)
                      ..++.++||.|+ |++|...++.+...|+ +|++++++++.   +++++...++ |. . .....+.+... ++|++|++
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~---~~~~~~~~~~~D~-~-~~~~~~~~~~~-~iD~lv~~   88 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVVCDL-R-KDLDLLFEKVK-EVDILVLN   88 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEECCT-T-TCHHHHHHHSC-CCSEEEEC
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHH---HHhhCCeEEEeeH-H-HHHHHHHHHhc-CCCEEEEC
Confidence            346788999987 9999999999988999 89999887643   3445532222 22 1 12222222222 69999999


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      +|.
T Consensus        89 Ag~   91 (249)
T 1o5i_A           89 AGG   91 (249)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            874

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.10  E-value=0.029  Score=49.48  Aligned_cols=77  Identities=16%  Similarity=0.125  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-H---cCCCe-E--EeCCCCCchhH-HHHh---hCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R---FGVTE-F--VNSKNCGDKSI-IIDM---TDG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~---lg~~~-v--v~~~~~~~~~~-i~~~---~~g  268 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+. +   .+... .  .|..+...... +...   ..+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   82 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQG   82 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            4678999987 9999999999999999 8999988877655332 2   24322 2  23333111111 2222   135


Q ss_pred             CccEEEEccC
Q 016660          269 GADYCFECVG  278 (385)
Q Consensus       269 ~~d~vid~~g  278 (385)
                      .+|++|+++|
T Consensus        83 ~id~lvnnAg   92 (260)
T 2qq5_A           83 RLDVLVNNAY   92 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CceEEEECCc
Confidence            7999999994

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.09  E-value=0.011  Score=51.47  Aligned_cols=102  Identities=18%  Similarity=0.159  Sum_probs=66.7

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhh--C-
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMT--D-  267 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~--~-  267 (385)
                      ....++.+||-+|+| .|..++.+++..  +. +|++++.+++..+.+++    .|...-+.....+....+..+.  + 
T Consensus        68 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~  145 (232)
T 3cbg_A           68 ISLTGAKQVLEIGVF-RGYSALAMALQLPPDG-QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKP  145 (232)
T ss_dssp             HHHHTCCEEEEECCT-TSHHHHHHHTTSCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSS
T ss_pred             HHhcCCCEEEEecCC-CCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCC
Confidence            344577899999987 688899999876  45 89999999988887764    3543211111111222233332  2 


Q ss_pred             -CCccEEEEccCC---hHHHHHHHHHhccCCceEEEec
Q 016660          268 -GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       268 -g~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                       +.||+||-....   ...++.+.+.|+++ |.++.-.
T Consensus       146 ~~~fD~V~~d~~~~~~~~~l~~~~~~Lkpg-G~lv~~~  182 (232)
T 3cbg_A          146 LPEFDLIFIDADKRNYPRYYEIGLNLLRRG-GLMVIDN  182 (232)
T ss_dssp             CCCEEEEEECSCGGGHHHHHHHHHHTEEEE-EEEEEEC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence             579999843322   34478899999997 9888653

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.08  E-value=0.019  Score=50.86  Aligned_cols=78  Identities=22%  Similarity=0.288  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHHH----HHHcCCCeEEeCCCCCchhHHHHhhC------C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI----GKRFGVTEFVNSKNCGDKSIIIDMTD------G  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~----~~~lg~~~vv~~~~~~~~~~i~~~~~------g  268 (385)
                      ++.+|||+|+ |++|...++.+...|+ +|+++++ ++++.+.    +++.+....+-.-+......+.++..      +
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   98 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   98 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4678999987 9999999999998999 7888877 6555432    23345432221112122222222211      3


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        99 ~~d~vi~~Ag~  109 (274)
T 1ja9_A           99 GLDFVMSNSGM  109 (274)
T ss_dssp             CEEEEECCCCC
T ss_pred             CCCEEEECCCC
Confidence            69999998874

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.08  E-value=0.014  Score=49.23  Aligned_cols=60  Identities=27%  Similarity=0.341  Sum_probs=41.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhC--CCccEEEEccC
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTD--GGADYCFECVG  278 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~--g~~d~vid~~g  278 (385)
                      ++||.|+ |.+|...++.+. .|+ +|++++++++          ....|..+   ...+.+...  +++|++|+++|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~----------~~~~D~~~---~~~~~~~~~~~~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSG----------DVTVDITN---IDSIKKMYEQVGKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSS----------SEECCTTC---HHHHHHHHHHHCCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCcc----------ceeeecCC---HHHHHHHHHHhCCCCEEEECCC
Confidence            6999987 999999998888 899 8998887754          12233333   222222222  36899999987

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.08  E-value=0.015  Score=50.00  Aligned_cols=97  Identities=22%  Similarity=0.242  Sum_probs=67.3

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHH----cC-----CCe--EEeCCCCCchhHHHHh
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR----FG-----VTE--FVNSKNCGDKSIIIDM  265 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~----lg-----~~~--vv~~~~~~~~~~i~~~  265 (385)
                      .++++++||-+|+|. |..+..+++..|.. +|++++.+++..+.+++    .|     .+.  ++.. +  ....  ..
T Consensus        74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d--~~~~--~~  147 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG-D--GRMG--YA  147 (226)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES-C--GGGC--CG
T ss_pred             hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC-C--cccC--cc
Confidence            377899999999876 88888888887632 89999999988877654    22     122  2221 1  1100  01


Q ss_pred             hCCCccEEEEccCChHHHHHHHHHhccCCceEEEec
Q 016660          266 TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       266 ~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ..+.||+|+........+..+.+.|+++ |++++.-
T Consensus       148 ~~~~fD~i~~~~~~~~~~~~~~~~Lkpg-G~lv~~~  182 (226)
T 1i1n_A          148 EEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILPV  182 (226)
T ss_dssp             GGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             cCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEE
Confidence            1237999987776666678899999997 9987754

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.08  E-value=0.014  Score=51.90  Aligned_cols=78  Identities=21%  Similarity=0.128  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe-EEeCCCCCchhH-HHHhh--CCCccEEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSI-IIDMT--DGGADYCFE  275 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vv~~~~~~~~~~-i~~~~--~g~~d~vid  275 (385)
                      .+.++||.|+ |++|...++.+...|+ +|++++++.++.+.+..-.+.. ..|..+...... +....  -+++|++|+
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn   93 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVN   93 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            4678999987 9999999999999999 7888888877655432211111 123333111111 22111  137999999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      ++|.
T Consensus        94 nAg~   97 (266)
T 3p19_A           94 NAGM   97 (266)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9984

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.07  E-value=0.025  Score=51.90  Aligned_cols=77  Identities=18%  Similarity=0.148  Sum_probs=47.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC-----chHHHHH----HHcCCCe-E--EeCCCCCchhH-HHHhh-
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-----SEKFEIG----KRFGVTE-F--VNSKNCGDKSI-IIDMT-  266 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~-----~~~~~~~----~~lg~~~-v--v~~~~~~~~~~-i~~~~-  266 (385)
                      +.++||+|+ |++|...++.+...|+ +|+++.++     .++.+.+    +..+... +  .|..+...... +.... 
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            578999987 9999999999999999 88887654     3333332    2334332 2  23333111111 22221 


Q ss_pred             -CCCccEEEEccCC
Q 016660          267 -DGGADYCFECVGL  279 (385)
Q Consensus       267 -~g~~d~vid~~g~  279 (385)
                       -|++|++|+++|.
T Consensus        84 ~~g~iD~lVnnAG~   97 (324)
T 3u9l_A           84 EDGRIDVLIHNAGH   97 (324)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence             1479999999983

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.07  E-value=0.031  Score=50.98  Aligned_cols=89  Identities=16%  Similarity=0.259  Sum_probs=65.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++. .+.++|+.. .   +  ..+ +..    ..|+|+-+++.
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~-~---~--l~e-ll~----~aDvVvl~~P~  206 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAKA-V---S--LEE-LLK----NSDVISLHVTV  206 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCEE-C---C--HHH-HHH----HCSEEEECCCC
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCcee-c---C--HHH-HHh----hCCEEEEeccC
Confidence            467899999999999999999999999 899999887764 456778642 1   1  211 111    37999998874


Q ss_pred             hH----HH-HHHHHHhccCCceEEEecc
Q 016660          280 AS----LV-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~----~~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      ..    .+ +..+..++++ +.++.++.
T Consensus       207 ~~~t~~li~~~~l~~mk~g-a~lIn~ar  233 (313)
T 2ekl_A          207 SKDAKPIIDYPQFELMKDN-VIIVNTSR  233 (313)
T ss_dssp             CTTSCCSBCHHHHHHSCTT-EEEEESSC
T ss_pred             ChHHHHhhCHHHHhcCCCC-CEEEECCC
Confidence            32    12 4567888996 88887765

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.06  E-value=0.024  Score=50.76  Aligned_cols=41  Identities=22%  Similarity=0.257  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  242 (385)
                      ++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKV   68 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4678999997 9999999999988999 899999988776543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.05  E-value=0.045  Score=46.86  Aligned_cols=75  Identities=15%  Similarity=0.091  Sum_probs=54.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +|+|+|+|.+|...++.+...|. .|+++++++++.+.+. .++.. ++..+. .....+.+..-..+|+++-+++...
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~-~i~gd~-~~~~~l~~a~i~~ad~vi~~~~~d~   77 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKAT-IIHGDG-SHKEILRDAEVSKNDVVVILTPRDE   77 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSE-EEESCT-TSHHHHHHHTCCTTCEEEECCSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCe-EEEcCC-CCHHHHHhcCcccCCEEEEecCCcH
Confidence            48899999999999999999999 8999999999887754 45654 333322 2233233332237999999999876

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.05  E-value=0.023  Score=50.91  Aligned_cols=71  Identities=13%  Similarity=0.089  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCC---CeEEeCCCCCchhHHHHhhCCCccEEEEc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGV---TEFVNSKNCGDKSIIIDMTDGGADYCFEC  276 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~---~~vv~~~~~~~~~~i~~~~~g~~d~vid~  276 (385)
                      .+.+++|+|+|++|.+++..+...|+++|+++.++.++.+. +++++.   ..+....+         + ...+|+||++
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~---------l-~~~aDiIIna  194 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQ---------L-KQSYDVIINS  194 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG---------C-CSCEEEEEEC
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHH---------h-cCCCCEEEEc
Confidence            67899999999999999998888998789999999888654 444442   12333222         1 1369999999


Q ss_pred             cCChH
Q 016660          277 VGLAS  281 (385)
Q Consensus       277 ~g~~~  281 (385)
                      ++...
T Consensus       195 Tp~gm  199 (281)
T 3o8q_A          195 TSASL  199 (281)
T ss_dssp             SCCCC
T ss_pred             CcCCC
Confidence            98653

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.04  E-value=0.025  Score=53.02  Aligned_cols=131  Identities=13%  Similarity=0.027  Sum_probs=81.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHH--------cCCCEEEEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCC-CccE
Q 016660          203 STVVIFGLGSIGLAVAEGARL--------CGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADY  272 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~--------~G~~~vi~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~  272 (385)
                      =+|.|+|+|.+|...+...+.        -+++-|-++++++++.+ .++++|...+++  +      ..++... .+|+
T Consensus        26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~--d------~~ell~~~~iDa   97 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATA--D------WRALIADPEVDV   97 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEES--C------HHHHHHCTTCCE
T ss_pred             ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecC--C------HHHHhcCCCCcE
Confidence            479999999999876554432        25633445566666654 567789876642  2      2333333 7999


Q ss_pred             EEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHH------Hh-hcCcEEEEeeecCCCCCCcHHHHHHHHH
Q 016660          273 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------VL-HSGKILMGSLFGGLKAKSDIPILLKRYM  345 (385)
Q Consensus       273 vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~  345 (385)
                      |+-|+......+.+..++..  |+-|++-..     +..+...      .. .++..+.-.  ..+.+...+..+-++++
T Consensus        98 V~IatP~~~H~~~a~~al~a--GkhVl~EKP-----la~~~~ea~~l~~~a~~~g~~l~vg--~~~R~~p~~~~~k~~i~  168 (393)
T 4fb5_A           98 VSVTTPNQFHAEMAIAALEA--GKHVWCEKP-----MAPAYADAERMLATAERSGKVAALG--YNYIQNPVMRHIRKLVG  168 (393)
T ss_dssp             EEECSCGGGHHHHHHHHHHT--TCEEEECSC-----SCSSHHHHHHHHHHHHHSSSCEEEC--CGGGGCHHHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHhc--CCeEEEccC-----CcccHHHHHHhhhhHHhcCCccccc--cccccChHHHHHHHHHH
Confidence            99999988878899999988  677777542     3333222      11 234443322  22333456888889999


Q ss_pred             cCCCC
Q 016660          346 DKELE  350 (385)
Q Consensus       346 ~g~~~  350 (385)
                      +|.+-
T Consensus       169 ~G~iG  173 (393)
T 4fb5_A          169 DGVIG  173 (393)
T ss_dssp             TTTTC
T ss_pred             cCCCc
Confidence            88553

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.04  E-value=0.022  Score=49.22  Aligned_cols=75  Identities=12%  Similarity=0.068  Sum_probs=50.1

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEEeCCCCCchhHHHHhh---CCCccEEEEccC
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSIIIDMT---DGGADYCFECVG  278 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv~~~~~~~~~~i~~~~---~g~~d~vid~~g  278 (385)
                      ++||.|+ |++|...+..+...|+ +|+++++++++.+.+. +++....+..-+......+.++.   ...+|++|+++|
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag   81 (230)
T 3guy_A            3 LIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAG   81 (230)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCC
T ss_pred             EEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCC
Confidence            5899987 9999999999999999 7999999888776554 34432111112222333344333   234699999988


Q ss_pred             C
Q 016660          279 L  279 (385)
Q Consensus       279 ~  279 (385)
                      .
T Consensus        82 ~   82 (230)
T 3guy_A           82 S   82 (230)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.03  E-value=0.024  Score=50.95  Aligned_cols=87  Identities=16%  Similarity=0.192  Sum_probs=61.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASL  282 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~  282 (385)
                      .+|.|+|.|.+|...++.+...|+ .|++.++++++.+.+.+.|+...   .+  ..+ +..    ..|+||-|++.+..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~~--~~~-~~~----~aDvvi~~vp~~~~   70 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAERA---AT--PCE-VVE----SCPVTFAMLADPAA   70 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC---SS--HHH-HHH----HCSEEEECCSSHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec---CC--HHH-HHh----cCCEEEEEcCCHHH
Confidence            368999999999999999988998 89999999999888887775321   11  111 111    36899999987644


Q ss_pred             HHHHH-------HHhccCCceEEEec
Q 016660          283 VQEAY-------ACCRKGWGKTIVLG  301 (385)
Q Consensus       283 ~~~~~-------~~l~~~~G~~v~~g  301 (385)
                      ++..+       ..++++ ..++..+
T Consensus        71 ~~~v~~~~~~l~~~l~~~-~~vi~~s   95 (287)
T 3pef_A           71 AEEVCFGKHGVLEGIGEG-RGYVDMS   95 (287)
T ss_dssp             HHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred             HHHHHcCcchHhhcCCCC-CEEEeCC
Confidence            55544       455664 5555554

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.02  E-value=0.042  Score=48.34  Aligned_cols=94  Identities=21%  Similarity=0.348  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-eEEeCCCCCchhHHHH-hhCCCccE
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSIIID-MTDGGADY  272 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~vv~~~~~~~~~~i~~-~~~g~~d~  272 (385)
                      +.++++||-+|+|. |.+++.+++ .|. +|++++.++...+.+++    .+.. .++. .+      +.. +..+.||+
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~-~d------~~~~~~~~~fD~  187 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE-GS------LEAALPFGPFDL  187 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE-SC------HHHHGGGCCEEE
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEE-CC------hhhcCcCCCCCE
Confidence            67889999999876 777777776 577 99999999988877765    3432 2221 11      122 22347999


Q ss_pred             EEEccCC---hHHHHHHHHHhccCCceEEEeccC
Q 016660          273 CFECVGL---ASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       273 vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      |+.....   ...+..+.+.++++ |++++.+..
T Consensus       188 Vv~n~~~~~~~~~l~~~~~~Lkpg-G~lils~~~  220 (254)
T 2nxc_A          188 LVANLYAELHAALAPRYREALVPG-GRALLTGIL  220 (254)
T ss_dssp             EEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEEE
T ss_pred             EEECCcHHHHHHHHHHHHHHcCCC-CEEEEEeec
Confidence            9865422   24467888899997 999887653

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.01  E-value=0.026  Score=50.77  Aligned_cols=40  Identities=15%  Similarity=0.136  Sum_probs=33.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc-CCchHHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEI  241 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~-~~~~~~~~  241 (385)
                      .+.++||.|+ |++|...++.+...|+ +|++++ +++++.+.
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~   49 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANA   49 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHH
Confidence            4678999987 9999999999999999 899988 88776553

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.01  E-value=0.041  Score=52.84  Aligned_cols=102  Identities=16%  Similarity=0.213  Sum_probs=65.4

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHHHhhCCCcc
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIIIDMTDGGAD  271 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~~~~g~~d  271 (385)
                      ..++++++||=.|+|+ |..++++|..++ ...|++++.++++.+.++    .+|...+.-...  +...+.....+.||
T Consensus       101 L~~~~g~~VLDlcaGp-Ggkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~--Da~~l~~~~~~~FD  177 (456)
T 3m4x_A          101 AAAKPGEKVLDLCAAP-GGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNH--APAELVPHFSGFFD  177 (456)
T ss_dssp             HCCCTTCEEEESSCTT-CHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECC--CHHHHHHHHTTCEE
T ss_pred             cCCCCCCEEEEECCCc-CHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeC--CHHHhhhhccccCC
Confidence            4578899988887654 445566666543 238999999999887665    467654322222  22223333345799


Q ss_pred             EEEE---ccCCh-------------------------HHHHHHHHHhccCCceEEEecc
Q 016660          272 YCFE---CVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       272 ~vid---~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .|+-   |+|..                         ..+..++++|+++ |++++...
T Consensus       178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYsTC  235 (456)
T 3m4x_A          178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNK-GQLIYSTC  235 (456)
T ss_dssp             EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEE-EEEEEEES
T ss_pred             EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            9864   44432                         4467888999997 99886543

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.00  E-value=0.02  Score=51.62  Aligned_cols=87  Identities=18%  Similarity=0.202  Sum_probs=61.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLV  283 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~  283 (385)
                      +|.|+|+|.+|...+..+...|. .|++.++++++.+.+.+.|...   ..+  ..+.+ .    ..|+||.|++.+..+
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~---~~~--~~~~~-~----~~D~vi~~v~~~~~~   75 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET---AST--AKAIA-E----QCDVIITMLPNSPHV   75 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE---CSS--HHHHH-H----HCSEEEECCSSHHHH
T ss_pred             eEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCee---cCC--HHHHH-h----CCCEEEEECCCHHHH
Confidence            69999999999999888888898 8999999999888877766531   111  11111 1    379999999976545


Q ss_pred             HHHH-------HHhccCCceEEEecc
Q 016660          284 QEAY-------ACCRKGWGKTIVLGV  302 (385)
Q Consensus       284 ~~~~-------~~l~~~~G~~v~~g~  302 (385)
                      +..+       ..++++ ..++.++.
T Consensus        76 ~~~~~~~~~l~~~l~~~-~~vv~~s~  100 (299)
T 1vpd_A           76 KEVALGENGIIEGAKPG-TVLIDMSS  100 (299)
T ss_dssp             HHHHHSTTCHHHHCCTT-CEEEECSC
T ss_pred             HHHHhCcchHhhcCCCC-CEEEECCC
Confidence            5554       456664 55665543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.00  E-value=0.031  Score=50.91  Aligned_cols=77  Identities=14%  Similarity=0.171  Sum_probs=51.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC---chHHHHH-HH----cCCC-eEEeCCCCCchhHHHHhhCCCc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---SEKFEIG-KR----FGVT-EFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~---~~~~~~~-~~----lg~~-~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      -.+.++||+|+|++|.+++..+...|+++|+++.++   .++.+.+ ++    ++.. .+++..+   ...+.+.. ..+
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~---~~~l~~~l-~~a  227 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED---HEQLRKEI-AES  227 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC---HHHHHHHH-HTC
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch---HHHHHhhh-cCC
Confidence            367899999999999999999999999889999898   5555433 22    2322 2344433   11122211 158


Q ss_pred             cEEEEccCCh
Q 016660          271 DYCFECVGLA  280 (385)
Q Consensus       271 d~vid~~g~~  280 (385)
                      |+||++++..
T Consensus       228 DiIINaTp~G  237 (315)
T 3tnl_A          228 VIFTNATGVG  237 (315)
T ss_dssp             SEEEECSSTT
T ss_pred             CEEEECccCC
Confidence            9999998743

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.99  E-value=0.016  Score=49.94  Aligned_cols=100  Identities=14%  Similarity=0.219  Sum_probs=69.6

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC---C-eEEeCCCCCchhHHHHh-hC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV---T-EFVNSKNCGDKSIIIDM-TD  267 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~---~-~vv~~~~~~~~~~i~~~-~~  267 (385)
                      +.....+.++++||-+|+|. |..+..+++.. . +|++++.+++..+.+++...   . .++..+-   ..   .+ ..
T Consensus        62 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~---~~---~~~~~  132 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILGDG---TL---GYEEE  132 (231)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG---GG---CCGGG
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCc---cc---ccccC
Confidence            34555778899999999876 88888888874 4 99999999998888776421   1 2222211   11   11 12


Q ss_pred             CCccEEEEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          268 GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       268 g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +.||+|+...........+.+.|+++ |+++..-.
T Consensus       133 ~~fD~v~~~~~~~~~~~~~~~~L~pg-G~l~~~~~  166 (231)
T 1vbf_A          133 KPYDRVVVWATAPTLLCKPYEQLKEG-GIMILPIG  166 (231)
T ss_dssp             CCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEEC
T ss_pred             CCccEEEECCcHHHHHHHHHHHcCCC-cEEEEEEc
Confidence            47999997766555457889999997 99887643

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.99  E-value=0.028  Score=51.36  Aligned_cols=76  Identities=17%  Similarity=0.146  Sum_probs=50.8

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc-----CCC-eEE---eCCCCCchhHHHHhhCC
Q 016660          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-----GVT-EFV---NSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       199 ~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-----g~~-~vv---~~~~~~~~~~i~~~~~g  268 (385)
                      ..++.+|||+|+ |.+|...+..+...|+ +|++++++.++.+.+.+.     +.. .++   |..+   ...+.+... 
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d---~~~~~~~~~-   82 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK---QGAYDEVIK-   82 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS---TTTTTTTTT-
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC---hHHHHHHHc-
Confidence            345678999997 9999999998888899 899998887765544321     221 222   3332   111223222 


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|+||++++.
T Consensus        83 ~~d~vih~A~~   93 (342)
T 1y1p_A           83 GAAGVAHIASV   93 (342)
T ss_dssp             TCSEEEECCCC
T ss_pred             CCCEEEEeCCC
Confidence            69999999874

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=95.99  E-value=0.024  Score=52.55  Aligned_cols=134  Identities=14%  Similarity=0.109  Sum_probs=80.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHH-HHHcCCCeEEeCCCCCchhHHHHhhC-CCccEEEEccC
Q 016660          203 STVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSIIIDMTD-GGADYCFECVG  278 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~i~~~~~-g~~d~vid~~g  278 (385)
                      -+|.|+|+|.+|...+..++..  +++-+.+.++++++.+. ++++|+ .++  .+      ..++.. ..+|+|+.|+.
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~-~~~--~~------~~~ll~~~~~D~V~i~tp   84 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGA-RGH--AS------LTDMLAQTDADIVILTTP   84 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCC-EEE--SC------HHHHHHHCCCSEEEECSC
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCC-cee--CC------HHHHhcCCCCCEEEECCC
Confidence            4699999999998877777765  67334466777777554 556786 332  22      222222 36999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCCCCCcc-cccHHHHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQPGSQL-SLSSFEVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      .....+.+..++..  |+-|++......... ...+.... .++..+.-.  ..+.+...+..+.+++++|.+
T Consensus        85 ~~~h~~~~~~al~~--gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~--~~~r~~p~~~~~k~~i~~g~i  153 (354)
T 3q2i_A           85 SGLHPTQSIECSEA--GFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVV--KQNRRNATLQLLKRAMQEKRF  153 (354)
T ss_dssp             GGGHHHHHHHHHHT--TCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEEC--CGGGGSHHHHHHHHHHHTTTT
T ss_pred             cHHHHHHHHHHHHC--CCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEE--EcccCCHHHHHHHHHHhcCCC
Confidence            88778888888887  566666432111100 01111111 234444322  122233567888888988855

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=95.98  E-value=0.057  Score=48.26  Aligned_cols=78  Identities=18%  Similarity=0.141  Sum_probs=48.0

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCCch---HHHHHH-HcCCCeEE--eCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIGK-RFGVTEFV--NSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~~---~~~~~~-~lg~~~vv--~~~~~~~~~~-i~~~~--~g  268 (385)
                      .+.++||+|+   |++|...++.+...|+ +|++++++++   ..+.+. +.+...++  |..+...... +....  -+
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4678999985   6999999998888999 8998888765   222222 23422222  3333111111 11111  24


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        99 ~iD~lv~~Ag~  109 (285)
T 2p91_A           99 SLDIIVHSIAY  109 (285)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=95.98  E-value=0.03  Score=49.76  Aligned_cols=78  Identities=17%  Similarity=0.147  Sum_probs=48.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHHH----HHHcCCCeEEeCCCCCchhHHHH----hh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI----GKRFGVTEFVNSKNCGDKSIIID----MT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~----~~~lg~~~vv~~~~~~~~~~i~~----~~--~g  268 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++ +.++.+.    +++.+....+-.-+......+.+    ..  -+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g  105 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWG  105 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5778999987 9999999999999999 7877766 4444433    23345432221222222222222    11  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus       106 ~id~lv~nAg~  116 (269)
T 4dmm_A          106 RLDVLVNNAGI  116 (269)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999875

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.96  E-value=0.0099  Score=51.84  Aligned_cols=98  Identities=13%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC----CeEEeCCCCCchhHHHHhhCCCccEE-
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV----TEFVNSKNCGDKSIIIDMTDGGADYC-  273 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~----~~vv~~~~~~~~~~i~~~~~g~~d~v-  273 (385)
                      ..+|.+||-+|.|. |..+..+++..+. +|++++.+++-++.+++...    ...+...+  .......+..+.||.| 
T Consensus        58 ~~~G~rVLdiG~G~-G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~--a~~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           58 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGL--WEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESC--HHHHGGGSCTTCEEEEE
T ss_pred             ccCCCeEEEECCCc-cHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeeh--HHhhcccccccCCceEE
Confidence            46889999999874 7788888877666 89999999998888876432    11111111  1111222333479887 


Q ss_pred             EEccCC----------hHHHHHHHHHhccCCceEEEec
Q 016660          274 FECVGL----------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       274 id~~g~----------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +|++..          ...++++.+.|++| |+++++.
T Consensus       134 ~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG-G~l~f~~  170 (236)
T 3orh_A          134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCN  170 (236)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred             EeeeecccchhhhcchhhhhhhhhheeCCC-CEEEEEe
Confidence            565543          13467789999997 9998764

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=95.96  E-value=0.025  Score=49.63  Aligned_cols=75  Identities=16%  Similarity=0.274  Sum_probs=48.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeEEeCCCCCchhHHHHh----hC--CCccEEEE
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSIIIDM----TD--GGADYCFE  275 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vv~~~~~~~~~~i~~~----~~--g~~d~vid  275 (385)
                      ++||.|+ |++|...++.+...|+ +|+++++++++.+.+ ++++....+-.-+......+.++    ..  +++|++|+
T Consensus         2 ~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            6888887 9999999999988999 899998888776544 34443221111121222222222    12  36999999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      ++|.
T Consensus        81 nAg~   84 (248)
T 3asu_A           81 NAGL   84 (248)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9873

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=95.95  E-value=0.026  Score=50.29  Aligned_cols=102  Identities=10%  Similarity=0.030  Sum_probs=68.0

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHHHc-----CCCeE-EeCCCCCchhHHHH
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRF-----GVTEF-VNSKNCGDKSIIID  264 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~l-----g~~~v-v~~~~~~~~~~i~~  264 (385)
                      +.....+.++++||-+|+| .|..+..+++..  +. +|++++.+++..+.+++.     |.+.+ +...+  ...   .
T Consensus       102 ~~~~~~~~~~~~VLD~G~G-~G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d--~~~---~  174 (275)
T 1yb2_A          102 IIMRCGLRPGMDILEVGVG-SGNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD--IAD---F  174 (275)
T ss_dssp             ----CCCCTTCEEEEECCT-TSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSC--TTT---C
T ss_pred             HHHHcCCCCcCEEEEecCC-CCHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECc--hhc---c
Confidence            3345678899999999987 477888888873  45 999999999988877653     54322 11111  111   1


Q ss_pred             hhCCCccEEEEccCCh-HHHHHHHHHhccCCceEEEecc
Q 016660          265 MTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       265 ~~~g~~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +.++.||+|+-..... ..++.+.+.|+++ |+++....
T Consensus       175 ~~~~~fD~Vi~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~  212 (275)
T 1yb2_A          175 ISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP  212 (275)
T ss_dssp             CCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred             CcCCCccEEEEcCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence            1123699998755544 5578999999997 99887753

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=95.94  E-value=0.04  Score=50.02  Aligned_cols=100  Identities=19%  Similarity=0.279  Sum_probs=68.6

Q ss_pred             hhcc-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC---eEEeCCCCCchhHHHHhh
Q 016660          195 RTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSIIIDMT  266 (385)
Q Consensus       195 ~~~~-~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vv~~~~~~~~~~i~~~~  266 (385)
                      +... +.++++||-+|+|. |..+..+++..|. +|++++.+++..+.+++    .|..   .++..+-...     .+.
T Consensus       110 ~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~  182 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-----PFD  182 (312)
T ss_dssp             TTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CCC
T ss_pred             HHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-----CCC
Confidence            3344 78899999999875 7788888887787 89999999988877664    3432   2222111000     122


Q ss_pred             CCCccEEEEc-----cCChHHHHHHHHHhccCCceEEEecc
Q 016660          267 DGGADYCFEC-----VGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       267 ~g~~d~vid~-----~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .+.||+|+..     .+-...++.+.+.|+++ |++++...
T Consensus       183 ~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  222 (312)
T 3vc1_A          183 KGAVTASWNNESTMYVDLHDLFSEHSRFLKVG-GRYVTITG  222 (312)
T ss_dssp             TTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCEeEEEECCchhhCCHHHHHHHHHHHcCCC-cEEEEEEc
Confidence            3479999863     23345688999999997 99987654

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=95.94  E-value=0.031  Score=48.57  Aligned_cols=78  Identities=17%  Similarity=0.137  Sum_probs=48.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCC------EEEEEcCCchHHHHHH-Hc---CCCeEEeCCCCCchhHHHHhh----
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGAT------RIIGVDVISEKFEIGK-RF---GVTEFVNSKNCGDKSIIIDMT----  266 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~------~vi~~~~~~~~~~~~~-~l---g~~~vv~~~~~~~~~~i~~~~----  266 (385)
                      +.+|||+|+ |++|...++.+...|+.      +|+++++++++.+.+. ++   +....+-.-+......+....    
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            467999987 99999988888888874      6888888877665433 22   432111111212222222211    


Q ss_pred             --CCCccEEEEccCC
Q 016660          267 --DGGADYCFECVGL  279 (385)
Q Consensus       267 --~g~~d~vid~~g~  279 (385)
                        -+++|++|+++|.
T Consensus        82 ~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           82 ERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHTSCCSEEEECCCC
T ss_pred             HhCCCCCEEEEcCCc
Confidence              2379999999873

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.93  E-value=0.048  Score=45.01  Aligned_cols=100  Identities=16%  Similarity=0.135  Sum_probs=67.5

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCC-CeE-EeCCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEF-VNSKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~-~~v-v~~~~~~~~~~i~~~~  266 (385)
                      +.....+.++.+||-+|+|. |..+..+++.. . +|++++.+++..+.+++    .+. +.+ +...+  ..   ..+.
T Consensus        25 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d--~~---~~~~   96 (192)
T 1l3i_A           25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD--AP---EALC   96 (192)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESC--HH---HHHT
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHHHHHHcCCCcceEEEecC--HH---Hhcc
Confidence            33455678899999999877 88888888766 4 99999999988887765    443 221 11111  11   1122


Q ss_pred             C-CCccEEEEccCC---hHHHHHHHHHhccCCceEEEec
Q 016660          267 D-GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       267 ~-g~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      . +.+|+|+.....   ...++.+.+.++++ |.++...
T Consensus        97 ~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~g-G~l~~~~  134 (192)
T 1l3i_A           97 KIPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA  134 (192)
T ss_dssp             TSCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             cCCCCCEEEECCchHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence            2 379999865432   35577888999997 9887754

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.93  E-value=0.026  Score=50.02  Aligned_cols=73  Identities=18%  Similarity=0.180  Sum_probs=46.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe-EEeCCCCCchhH-HHHhh--CCCccEEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSI-IIDMT--DGGADYCFE  275 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vv~~~~~~~~~~-i~~~~--~g~~d~vid  275 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++     .-.+.. ..|..+...... +....  -+++|++|+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----EAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4678999987 9999999999999999 89988887655     111111 123333111111 21111  136999999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      ++|.
T Consensus        81 ~Ag~   84 (264)
T 2dtx_A           81 NAGI   84 (264)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9884

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.93  E-value=0.023  Score=49.94  Aligned_cols=96  Identities=13%  Similarity=0.111  Sum_probs=60.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhH-HHHhhC--CCccEEEEc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSI-IIDMTD--GGADYCFEC  276 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~-i~~~~~--g~~d~vid~  276 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.     ....++..+...... +.....  +++|++|++
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~   94 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNAD-----HSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCA   94 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTSS-----EEEECSCSSHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----cceEEEeCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            3678999987 9999999999999999 89999888765321     111223222111111 222222  368999999


Q ss_pred             cCCh--------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          277 VGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       277 ~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +|..                          ...+.+...++++ |+++.++..
T Consensus        95 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~  146 (251)
T 3orf_A           95 AGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG-GLFVLTGAS  146 (251)
T ss_dssp             CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred             CccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC-CEEEEEech
Confidence            9831                          0123455566675 899988754

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=95.92  E-value=0.029  Score=54.04  Aligned_cols=92  Identities=20%  Similarity=0.257  Sum_probs=68.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      .-.|.+|.|+|.|.+|..+++.++.+|+ +|++++++..+...+...|+. +.   +      +.+.. ...|+|+-+.+
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~-~~---~------l~ell-~~aDiVi~~~~  321 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-VV---T------LDEIV-DKGDFFITCTG  321 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-EC---C------HHHHT-TTCSEEEECCS
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCE-ec---C------HHHHH-hcCCEEEECCC
Confidence            3578999999999999999999999999 999999888775445556652 21   1      22222 24899998877


Q ss_pred             ChHHH-HHHHHHhccCCceEEEeccC
Q 016660          279 LASLV-QEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       279 ~~~~~-~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ....+ ...+..|+++ ..++.+|..
T Consensus       322 t~~lI~~~~l~~MK~g-ailiNvgrg  346 (479)
T 1v8b_A          322 NVDVIKLEHLLKMKNN-AVVGNIGHF  346 (479)
T ss_dssp             SSSSBCHHHHTTCCTT-CEEEECSST
T ss_pred             hhhhcCHHHHhhcCCC-cEEEEeCCC
Confidence            66544 3677888996 888888753

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.90  E-value=0.047  Score=50.39  Aligned_cols=79  Identities=22%  Similarity=0.196  Sum_probs=52.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHH-HcCCC--eEEeCCCCCchhHHHHhhCCCccEEE
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGK-RFGVT--EFVNSKNCGDKSIIIDMTDGGADYCF  274 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~-~lg~~--~vv~~~~~~~~~~i~~~~~g~~d~vi  274 (385)
                      -.+.+|||+|+ |.+|...++.+... |+.+|+++++++++.+.+. .+...  .++. -+......+.+... ++|+||
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~-~Dl~d~~~l~~~~~-~~D~Vi   96 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFI-GDVRDLERLNYALE-GVDICI   96 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEE-CCTTCHHHHHHHTT-TCSEEE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEE-CCCCCHHHHHHHHh-cCCEEE
Confidence            35678999997 99999998888877 8768999988887765443 33221  1221 12122333444443 699999


Q ss_pred             EccCCh
Q 016660          275 ECVGLA  280 (385)
Q Consensus       275 d~~g~~  280 (385)
                      ++++..
T Consensus        97 h~Aa~~  102 (344)
T 2gn4_A           97 HAAALK  102 (344)
T ss_dssp             ECCCCC
T ss_pred             ECCCCC
Confidence            999753

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=95.89  E-value=0.02  Score=50.61  Aligned_cols=79  Identities=13%  Similarity=0.184  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcC---CCEEEEEcCCchHHHHHHHc---CCC-eE--EeCCCCCchhH-HH---Hh
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCG---ATRIIGVDVISEKFEIGKRF---GVT-EF--VNSKNCGDKSI-II---DM  265 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G---~~~vi~~~~~~~~~~~~~~l---g~~-~v--v~~~~~~~~~~-i~---~~  265 (385)
                      .++.++||+|+ |++|...++.+...|   + +|++++++.++.+.++++   +.. .+  .|..+...... +.   +.
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence            35678999987 999999999998889   7 899998887654433332   322 22  23333222211 11   11


Q ss_pred             hCC-CccEEEEccCC
Q 016660          266 TDG-GADYCFECVGL  279 (385)
Q Consensus       266 ~~g-~~d~vid~~g~  279 (385)
                      .+. ++|++|+++|.
T Consensus        98 ~g~~~id~li~~Ag~  112 (267)
T 1sny_A           98 TKDQGLNVLFNNAGI  112 (267)
T ss_dssp             HGGGCCSEEEECCCC
T ss_pred             cCCCCccEEEECCCc
Confidence            222 59999999873

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.031  Score=50.26  Aligned_cols=79  Identities=20%  Similarity=0.157  Sum_probs=49.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCC--EEEEEcCCchHHHHHHH-c-----CCCe-E--EeCCCCCchhH-HHHhhC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGAT--RIIGVDVISEKFEIGKR-F-----GVTE-F--VNSKNCGDKSI-IIDMTD  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~--~vi~~~~~~~~~~~~~~-l-----g~~~-v--v~~~~~~~~~~-i~~~~~  267 (385)
                      .+.++||+|+ |++|...++.+...|+.  +|+.++++.++.+.+.+ +     +... .  .|..+...... +.....
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            4678999987 99999988776655542  78888888877665432 2     3321 1  24433222222 222212


Q ss_pred             --CCccEEEEccCC
Q 016660          268 --GGADYCFECVGL  279 (385)
Q Consensus       268 --g~~d~vid~~g~  279 (385)
                        +++|++|+++|.
T Consensus       112 ~~g~iD~lVnnAG~  125 (287)
T 3rku_A          112 EFKDIDILVNNAGK  125 (287)
T ss_dssp             GGCSCCEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence              369999999883

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.89  E-value=0.045  Score=51.85  Aligned_cols=95  Identities=14%  Similarity=0.106  Sum_probs=64.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCC--CEEEEEcCCchHHHHHH-HcC------CCe-EEeCCCCCchhHHHHhhCC-CccE
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGA--TRIIGVDVISEKFEIGK-RFG------VTE-FVNSKNCGDKSIIIDMTDG-GADY  272 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~--~~vi~~~~~~~~~~~~~-~lg------~~~-vv~~~~~~~~~~i~~~~~g-~~d~  272 (385)
                      +|+|+|+|.+|..+++.+...|.  ..|++++++.++.+.+. +++      +.. .+|..+   ...+.++..+ ++|+
T Consensus         3 kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d---~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            3 KVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADS---IEELVALINEVKPQI   79 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTC---HHHHHHHHHHHCCSE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCC---HHHHHHHHHhhCCCE
Confidence            68999999999999998887773  38889999888866543 332      211 123222   2334444444 6899


Q ss_pred             EEEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          273 CFECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       273 vid~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ||++++.......+..++..+ -.++.++.
T Consensus        80 Vin~ag~~~~~~v~~a~l~~g-~~vvD~a~  108 (405)
T 4ina_A           80 VLNIALPYQDLTIMEACLRTG-VPYLDTAN  108 (405)
T ss_dssp             EEECSCGGGHHHHHHHHHHHT-CCEEESSC
T ss_pred             EEECCCcccChHHHHHHHHhC-CCEEEecC
Confidence            999998765456666777775 66776544

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=95.88  E-value=0.03  Score=48.66  Aligned_cols=76  Identities=22%  Similarity=0.147  Sum_probs=47.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCCchHHHHH----HHcCCCeEE-eCCCCCchhHHHHhh------CCC
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTEFV-NSKNCGDKSIIIDMT------DGG  269 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~----~~lg~~~vv-~~~~~~~~~~i~~~~------~g~  269 (385)
                      .++||.|+ |++|...++.+...|+ +|+++ ++++++.+.+    ++.+..... -.-+......+....      -++
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG   80 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence            57899987 9999999999988999 78887 7777665533    223433211 111212222222221      137


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        81 ~d~li~~Ag~   90 (245)
T 2ph3_A           81 LDTLVNNAGI   90 (245)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.88  E-value=0.053  Score=50.46  Aligned_cols=113  Identities=15%  Similarity=0.151  Sum_probs=73.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC----chH---------HHHHHHcCCCeEEeCCCCCchhHHHHhh
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI----SEK---------FEIGKRFGVTEFVNSKNCGDKSIIIDMT  266 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~----~~~---------~~~~~~lg~~~vv~~~~~~~~~~i~~~~  266 (385)
                      -++.+|+|.|+|..|..+++++..+|+++|++++++    .+|         .+++++...     ...   ...+.+..
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~-----~~~---~~~L~eav  261 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP-----ERL---SGDLETAL  261 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT-----TCC---CSCHHHHH
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc-----cCc---hhhHHHHH
Confidence            467899999999999999999999999899999987    544         334443221     001   11133333


Q ss_pred             CCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEe
Q 016660          267 DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  326 (385)
Q Consensus       267 ~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  326 (385)
                      . ++|++|-+++....-++.++.|+++ ..++.+++..    .+..+......+..+..+
T Consensus       262 ~-~ADVlIG~Sap~l~t~emVk~Ma~~-pIIfalSNPt----~E~~p~~a~~~g~~i~at  315 (388)
T 1vl6_A          262 E-GADFFIGVSRGNILKPEWIKKMSRK-PVIFALANPV----PEIDPELAREAGAFIVAT  315 (388)
T ss_dssp             T-TCSEEEECSCSSCSCHHHHTTSCSS-CEEEECCSSS----CSSCHHHHHHTTCSEEEE
T ss_pred             c-cCCEEEEeCCCCccCHHHHHhcCCC-CEEEEcCCCC----CCCCHHHHHHhcCeEEEe
Confidence            3 3799999988433235777888885 7666666532    244555554445455555

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.88  E-value=0.058  Score=48.06  Aligned_cols=85  Identities=19%  Similarity=0.218  Sum_probs=59.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eEEeCCCCCchhHHHHhhCCCccEEEEccCChHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSIIIDMTDGGADYCFECVGLASL  282 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~  282 (385)
                      +|.|+|+|.+|...+..+...|. .|++.++++++.+.+.+.|.. .+..  +      ..+.  ...|+||-++.... 
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~--~------~~~~--~~~D~vi~av~~~~-   69 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQ--D------LSLL--QTAKIIFLCTPIQL-   69 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEES--C------GGGG--TTCSEEEECSCHHH-
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCccccC--C------HHHh--CCCCEEEEECCHHH-
Confidence            58899999999999998888898 899999999988888887764 2221  1      1122  35899999998754 


Q ss_pred             HHHHHH----HhccCCceEEEec
Q 016660          283 VQEAYA----CCRKGWGKTIVLG  301 (385)
Q Consensus       283 ~~~~~~----~l~~~~G~~v~~g  301 (385)
                      ....++    .++++ ..++.++
T Consensus        70 ~~~~~~~l~~~~~~~-~~vv~~~   91 (279)
T 2f1k_A           70 ILPTLEKLIPHLSPT-AIVTDVA   91 (279)
T ss_dssp             HHHHHHHHGGGSCTT-CEEEECC
T ss_pred             HHHHHHHHHhhCCCC-CEEEECC
Confidence            333333    34453 4555553

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=95.88  E-value=0.031  Score=51.29  Aligned_cols=40  Identities=15%  Similarity=0.136  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc-CCchHHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEI  241 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~-~~~~~~~~  241 (385)
                      .+.++||.|+ |++|...++.+...|+ +|++++ +++++.+.
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~   86 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANA   86 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHH
Confidence            4678999987 9999999999999999 898888 88776554

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.87  E-value=0.038  Score=50.22  Aligned_cols=77  Identities=19%  Similarity=0.188  Sum_probs=50.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC---chHHHHH-HHc----CCC-eEEeCCCCCchhHHHHhhCCCc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---SEKFEIG-KRF----GVT-EFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~---~~~~~~~-~~l----g~~-~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      -.+.++||+|+|++|.+++..+...|+++|+++.++   .+|.+.+ +++    +.. .+++..+  . ....+.. ..+
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~--l-~~~~~~l-~~~  221 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLAD--Q-HAFTEAL-ASA  221 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTC--H-HHHHHHH-HHC
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHh--h-hhhHhhc-cCc
Confidence            357899999999999999999999999889999999   5544432 222    222 2333333  1 0001111 148


Q ss_pred             cEEEEccCCh
Q 016660          271 DYCFECVGLA  280 (385)
Q Consensus       271 d~vid~~g~~  280 (385)
                      |+||++++..
T Consensus       222 DiIINaTp~G  231 (312)
T 3t4e_A          222 DILTNGTKVG  231 (312)
T ss_dssp             SEEEECSSTT
T ss_pred             eEEEECCcCC
Confidence            9999998754

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=95.87  E-value=0.041  Score=48.07  Aligned_cols=78  Identities=23%  Similarity=0.214  Sum_probs=47.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHHH----HHHcCCCeEEeCCCCCchhHHHHhh------CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI----GKRFGVTEFVNSKNCGDKSIIIDMT------DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~----~~~lg~~~vv~~~~~~~~~~i~~~~------~g  268 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++ +.++.+.    +++.+....+-.-+......+.++.      -+
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   81 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG   81 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3578999987 9999999999999999 7777655 4444432    2334544322122222222222211      13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        82 ~id~lv~nAg~   92 (246)
T 3osu_A           82 SLDVLVNNAGI   92 (246)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.86  E-value=0.036  Score=50.95  Aligned_cols=89  Identities=29%  Similarity=0.442  Sum_probs=65.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.+.+|.|+|.|.+|...++.++.+|+ +|++.+++.++ +.+.++|+..    .+      +.++.. ..|+|+.+++.
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~----~~------l~ell~-~aDvV~l~~P~  229 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQQ----LP------LEEIWP-LCDFITVHTPL  229 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCEE----CC------HHHHGG-GCSEEEECCCC
T ss_pred             CCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCcee----CC------HHHHHh-cCCEEEEecCC
Confidence            467899999999999999999999999 89999887766 4566778642    11      112221 47999998876


Q ss_pred             hH----HH-HHHHHHhccCCceEEEecc
Q 016660          280 AS----LV-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~----~~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      ..    .+ ...+..++++ +.++.++.
T Consensus       230 t~~t~~li~~~~l~~mk~g-ailIN~ar  256 (335)
T 2g76_A          230 LPSTTGLLNDNTFAQCKKG-VRVVNCAR  256 (335)
T ss_dssp             CTTTTTSBCHHHHTTSCTT-EEEEECSC
T ss_pred             CHHHHHhhCHHHHhhCCCC-cEEEECCC
Confidence            43    12 4677888996 88888875

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=95.86  E-value=0.023  Score=50.08  Aligned_cols=95  Identities=14%  Similarity=0.049  Sum_probs=61.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCC--------------------CeE-EeCCCC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV--------------------TEF-VNSKNC  256 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~--------------------~~v-v~~~~~  256 (385)
                      ..++.+||.+|+|. |..+..||+. |+ .|++++.++.-++.+++ .+.                    ..+ +-..+ 
T Consensus        66 ~~~~~~vLD~GCG~-G~~~~~La~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D-  141 (252)
T 2gb4_A           66 GQSGLRVFFPLCGK-AIEMKWFADR-GH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS-  141 (252)
T ss_dssp             TCCSCEEEETTCTT-CTHHHHHHHT-TC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC-
T ss_pred             CCCCCeEEEeCCCC-cHHHHHHHHC-CC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECc-
Confidence            45788999999865 7777777765 88 89999999998888754 321                    111 11111 


Q ss_pred             CchhHHHHhhC-CCccEEEEccCC--------hHHHHHHHHHhccCCceEEEec
Q 016660          257 GDKSIIIDMTD-GGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       257 ~~~~~i~~~~~-g~~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                       ...  ..... +.||+|++...-        ...++.+.+.|+++ |+++++.
T Consensus       142 -~~~--l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG-G~l~l~~  191 (252)
T 2gb4_A          142 -IFD--LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE-FQYLVAV  191 (252)
T ss_dssp             -TTT--GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             -ccc--CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC-eEEEEEE
Confidence             110  11122 479999975321        13467888999997 9986543

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=95.85  E-value=0.035  Score=48.24  Aligned_cols=77  Identities=18%  Similarity=0.224  Sum_probs=47.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEE-EcCCchHHHHH----HHcCCCeEEeCCCCCchhHHHHhh------CCC
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKFEIG----KRFGVTEFVNSKNCGDKSIIIDMT------DGG  269 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~-~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~~~~------~g~  269 (385)
                      +.++||.|+ |++|...++.+...|+ +|++ ..+++++.+.+    ++.+....+-.-+......+....      -++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            467899987 9999999999999999 7777 47776665433    223432211111212222222211      237


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++|+++|.
T Consensus        80 id~li~~Ag~   89 (244)
T 1edo_A           80 IDVVVNNAGI   89 (244)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=95.85  E-value=0.019  Score=52.61  Aligned_cols=133  Identities=12%  Similarity=0.075  Sum_probs=76.6

Q ss_pred             EEEEEcCCHHHH-HHHHHHHH-cCCCEEEEEcCCchHHH-HHHHcCCCe-EEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          204 TVVIFGLGSIGL-AVAEGARL-CGATRIIGVDVISEKFE-IGKRFGVTE-FVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~g~vG~-~ai~la~~-~G~~~vi~~~~~~~~~~-~~~~lg~~~-vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      +|.|+|+|.+|. ..+..++. -++ ++++.++++++.+ +++++|+.. ..++.     +   .+ ...+|+|+.+++.
T Consensus         4 ~igiIG~G~ig~~~~~~~l~~~~~~-~l~v~d~~~~~~~~~a~~~g~~~~~~~~~-----~---~l-~~~~D~V~i~tp~   73 (323)
T 1xea_A            4 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCTDYR-----D---VL-QYGVDAVMIHAAT   73 (323)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCSSTT-----G---GG-GGCCSEEEECSCG
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHcCCCccccCHH-----H---Hh-hcCCCEEEEECCc
Confidence            588999999997 46665554 467 5558888887765 455677653 22211     1   12 2369999999998


Q ss_pred             hHHHHHHHHHhccCCceEEEeccCCCCCc-ccccHHHHhh-cCcEEEEeeecCCCCCCcHHHHHHHHHcCCCC
Q 016660          280 ASLVQEAYACCRKGWGKTIVLGVDQPGSQ-LSLSSFEVLH-SGKILMGSLFGGLKAKSDIPILLKRYMDKELE  350 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~  350 (385)
                      ....+.+..+++.  |+-|++........ ....+..+.. ++..+.-..  .+.+...+..+.+++++|.+-
T Consensus        74 ~~h~~~~~~al~~--Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~~~~i~~g~iG  142 (323)
T 1xea_A           74 DVHSTLAAFFLHL--GIPTFVDKPLAASAQECENLYELAEKHHQPLYVGF--NRRHIPLYNQHLSELAQQECG  142 (323)
T ss_dssp             GGHHHHHHHHHHT--TCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEEC--GGGCCHHHHHHCHHHHHTSCT
T ss_pred             hhHHHHHHHHHHC--CCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEee--ccccCHHHHHHHHHHhcCCcC
Confidence            8767778788887  45444532110000 0011112222 344443321  222235677778888888653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.84  E-value=0.027  Score=51.52  Aligned_cols=76  Identities=22%  Similarity=0.254  Sum_probs=50.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHH--HHHHHcCC--C-eEEeCCCCCchhHHHHhhCC-CccEEE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF--EIGKRFGV--T-EFVNSKNCGDKSIIIDMTDG-GADYCF  274 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~--~~~~~lg~--~-~vv~~~~~~~~~~i~~~~~g-~~d~vi  274 (385)
                      +.+|||+|+ |.+|...++.+...|+ +|+++++++++.  +.++.++.  . .++ .-+......+.+...+ ++|+||
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELGIENDVKII-HMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTTCTTTEEEC-CCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcccccccHhhccccCceeEE-ECCCCCHHHHHHHHHhcCCCEEE
Confidence            568999997 9999999998888899 899998876543  23344431  1 122 1222223334454444 689999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      ++++.
T Consensus        81 h~A~~   85 (345)
T 2z1m_A           81 NLAAQ   85 (345)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99884

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.84  E-value=0.029  Score=51.05  Aligned_cols=87  Identities=15%  Similarity=0.144  Sum_probs=60.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASL  282 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~  282 (385)
                      .+|.|+|.|.+|...++.+...|+ .|++.++++++.+.+.+.|+...   .+  ..+.+ .    ..|+||-|++.+..
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~---~~--~~~~~-~----~aDvvi~~vp~~~~   90 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGASVC---ES--PAEVI-K----KCKYTIAMLSDPCA   90 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC---SS--HHHHH-H----HCSEEEECCSSHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCeEc---CC--HHHHH-H----hCCEEEEEcCCHHH
Confidence            579999999999999999999999 89999999999888888776321   11  11111 1    26888888887654


Q ss_pred             HHHHH-------HHhccCCceEEEec
Q 016660          283 VQEAY-------ACCRKGWGKTIVLG  301 (385)
Q Consensus       283 ~~~~~-------~~l~~~~G~~v~~g  301 (385)
                      ++..+       ..++++ ..++.++
T Consensus        91 ~~~v~~~~~~l~~~l~~g-~~vv~~s  115 (310)
T 3doj_A           91 ALSVVFDKGGVLEQICEG-KGYIDMS  115 (310)
T ss_dssp             HHHHHHSTTCGGGGCCTT-CEEEECS
T ss_pred             HHHHHhCchhhhhccCCC-CEEEECC
Confidence            55554       234453 4455554

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=95.83  E-value=0.036  Score=54.15  Aligned_cols=81  Identities=19%  Similarity=0.229  Sum_probs=53.4

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH-------HHHHHHcCCCeEEeCCCCCchhHHHHhhC-CC
Q 016660          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------FEIGKRFGVTEFVNSKNCGDKSIIIDMTD-GG  269 (385)
Q Consensus       199 ~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~-------~~~~~~lg~~~vv~~~~~~~~~~i~~~~~-g~  269 (385)
                      ++++.++||+|+ |++|...+..+...|+++|+.+.++...       .+.+++.|....+-.-+......+.++.. +.
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~  335 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYP  335 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCC
Confidence            567899999987 9999999988888899778888777531       22334456542222222223333444333 47


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|+||++.|.
T Consensus       336 ld~VVh~AGv  345 (511)
T 2z5l_A          336 PNAVFHTAGI  345 (511)
T ss_dssp             CSEEEECCCC
T ss_pred             CcEEEECCcc
Confidence            9999999884

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.81  E-value=0.025  Score=51.72  Aligned_cols=89  Identities=17%  Similarity=0.195  Sum_probs=62.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      ..+|.|+|.|.+|...++.+...|+ .|++.++++++.+.+.+.|+...-   +      ..+.. ...|+||-|++.+.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~---~------~~e~~-~~aDvVi~~vp~~~   99 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGATIHE---Q------ARAAA-RDADIVVSMLENGA   99 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCEEES---S------HHHHH-TTCSEEEECCSSHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCEeeC---C------HHHHH-hcCCEEEEECCCHH
Confidence            3579999999999999999888999 899999999998888777753221   1      11111 14789999988765


Q ss_pred             HHHHHH------HHhccCCceEEEecc
Q 016660          282 LVQEAY------ACCRKGWGKTIVLGV  302 (385)
Q Consensus       282 ~~~~~~------~~l~~~~G~~v~~g~  302 (385)
                      .++..+      ..+.++ ..++..+.
T Consensus       100 ~~~~v~~~~~~~~~l~~~-~~vi~~st  125 (320)
T 4dll_A          100 VVQDVLFAQGVAAAMKPG-SLFLDMAS  125 (320)
T ss_dssp             HHHHHHTTTCHHHHCCTT-CEEEECSC
T ss_pred             HHHHHHcchhHHhhCCCC-CEEEecCC
Confidence            455444      245564 55555543

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=95.81  E-value=0.037  Score=49.33  Aligned_cols=91  Identities=11%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      ...+.+++|+|+|++|.+++..+...|+++|+++.++.+|.+ ++++++.. . .. +  .     .  ...+|+||+++
T Consensus       116 ~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~-~-~~-~--~-----~--~~~~DivInaT  183 (271)
T 1npy_A          116 LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-Y-IN-S--L-----E--NQQADILVNVT  183 (271)
T ss_dssp             CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-E-ES-C--C-----T--TCCCSEEEECS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-c-ch-h--h-----h--cccCCEEEECC
Confidence            445678999999999999999999999878999999987754 55566642 1 11 1  0     0  12589999999


Q ss_pred             CChHHH-------HHHHHHhccCCceEEEecc
Q 016660          278 GLASLV-------QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       278 g~~~~~-------~~~~~~l~~~~G~~v~~g~  302 (385)
                      +.....       ......+.++ ..++.+..
T Consensus       184 p~gm~~~~~~~~~~~~~~~l~~~-~~v~DlvY  214 (271)
T 1npy_A          184 SIGMKGGKEEMDLAFPKAFIDNA-SVAFDVVA  214 (271)
T ss_dssp             STTCTTSTTTTSCSSCHHHHHHC-SEEEECCC
T ss_pred             CCCccCccccCCCCCCHHHcCCC-CEEEEeec
Confidence            865411       1112455664 55665543

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=95.80  E-value=0.087  Score=49.01  Aligned_cols=128  Identities=15%  Similarity=0.101  Sum_probs=78.6

Q ss_pred             CEEEEEcCCHHHHH-HHHHHHHc-CCCEEE-EEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccC
Q 016660          203 STVVIFGLGSIGLA-VAEGARLC-GATRII-GVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG  278 (385)
Q Consensus       203 ~~VlI~G~g~vG~~-ai~la~~~-G~~~vi-~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g  278 (385)
                      -+|.|+|+|.+|.. .+..++.. ++ +++ ++++++++.+  ++++...++  .+      ..++... .+|+|+.|++
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~--~~~~~~~~~--~~------~~~ll~~~~~D~V~i~tp   76 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGL-NLAFVASRDEEKVK--RDLPDVTVI--AS------PEAAVQHPDVDLVVIASP   76 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTE-EEEEEECSCHHHHH--HHCTTSEEE--SC------HHHHHTCTTCSEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCe-EEEEEEcCCHHHHH--hhCCCCcEE--CC------HHHHhcCCCCCEEEEeCC
Confidence            36899999999984 67666654 77 555 5566665543  445443343  22      3444444 7999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCCCCCcccccHH------HHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF------EVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  350 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~------~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~  350 (385)
                      .....+.+..++..  |+-|++...     +..+..      ... .++..+.-.  ....+...+..+.+++++|.+-
T Consensus        77 ~~~H~~~~~~al~a--Gk~Vl~EKP-----la~~~~e~~~l~~~a~~~g~~~~v~--~~~r~~p~~~~~~~~i~~g~iG  146 (364)
T 3e82_A           77 NATHAPLARLALNA--GKHVVVDKP-----FTLDMQEARELIALAEEKQRLLSVF--HNRRWDSDYLGIRQVIEQGTLG  146 (364)
T ss_dssp             GGGHHHHHHHHHHT--TCEEEECSC-----SCSSHHHHHHHHHHHHHTTCCEEEC--CCCTTCHHHHHHHHHHHHTTTC
T ss_pred             hHHHHHHHHHHHHC--CCcEEEeCC-----CcCCHHHHHHHHHHHHHhCCeEEEE--eecccCHHHHHHHHHHHcCCCc
Confidence            88878888888888  566666432     222222      112 234444322  2233345678888889888553

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=95.80  E-value=0.025  Score=51.97  Aligned_cols=135  Identities=13%  Similarity=0.030  Sum_probs=80.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc-CCCEEE-EEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccC
Q 016660          203 STVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG  278 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~-G~~~vi-~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g  278 (385)
                      -+|.|+|+|.+|...+..++.. ++ .++ +.++++++.+ +++++|+..++  .+      ..++... .+|+|+.|+.
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~~~~--~~------~~~ll~~~~~D~V~i~tp   76 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQA-EVRGIASRRLENAQKMAKELAIPVAY--GS------YEELCKDETIDIIYIPTY   76 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSE-EEEEEBCSSSHHHHHHHHHTTCCCCB--SS------HHHHHHCTTCSEEEECCC
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCc-EEEEEEeCCHHHHHHHHHHcCCCcee--CC------HHHHhcCCCCCEEEEcCC
Confidence            3689999999998877777764 66 555 5567777655 45567764332  11      2333333 7999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCCCCCccc-ccHHHHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  350 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~  350 (385)
                      .....+.+..++..  |+-|++.......... ..+.... .++..+.-..  ...+...+..+.+++++|.+-
T Consensus        77 ~~~h~~~~~~al~~--gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~k~~i~~g~iG  146 (330)
T 3e9m_A           77 NQGHYSAAKLALSQ--GKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQ--KSVFLPITQKVKATIQEGGLG  146 (330)
T ss_dssp             GGGHHHHHHHHHHT--TCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECC--SGGGCHHHHHHHHHHHTTTTC
T ss_pred             CHHHHHHHHHHHHC--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEE--hhhhCHHHHHHHHHHhCCCCC
Confidence            98878888888888  4555554321111000 1111122 2344443221  222335678888899988653

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=95.80  E-value=0.02  Score=50.07  Aligned_cols=74  Identities=8%  Similarity=-0.044  Sum_probs=49.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-c--CCchHHHHH-HHc-CCCeEEeCCCCCchhHHHHhhC--CCccEE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-D--VISEKFEIG-KRF-GVTEFVNSKNCGDKSIIIDMTD--GGADYC  273 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~-~--~~~~~~~~~-~~l-g~~~vv~~~~~~~~~~i~~~~~--g~~d~v  273 (385)
                      +.++||.|+ |++|...++.+...|+ +|+++ +  +++++.+.+ +++ +. .+.+..+  ....+.....  +++|++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~--v~~~~~~~~~~~g~iD~l   76 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGT-IALAEQK--PERLVDATLQHGEAIDTI   76 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTE-EECCCCC--GGGHHHHHGGGSSCEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCC-cccCHHH--HHHHHHHHHHHcCCCCEE
Confidence            357899987 9999999999999999 89998 6  887776544 344 32 2333322  3333333322  379999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      |+++|.
T Consensus        77 v~~Ag~   82 (244)
T 1zmo_A           77 VSNDYI   82 (244)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999873

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=95.80  E-value=0.053  Score=47.51  Aligned_cols=101  Identities=16%  Similarity=0.242  Sum_probs=65.3

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhh-----
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMT-----  266 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~-----  266 (385)
                      ...++.+||-+|+|. |..++.+|+.+  +. +|++++.+++..+.+++    .|...-+.....+....+..+.     
T Consensus        76 ~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~  153 (247)
T 1sui_A           76 KLINAKNTMEIGVYT-GYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKN  153 (247)
T ss_dssp             HHTTCCEEEEECCGG-GHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGG
T ss_pred             HhhCcCEEEEeCCCc-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCC
Confidence            445678999999865 77888888876  45 99999999998887764    4542111111111222222221     


Q ss_pred             CCCccEEEEccCC---hHHHHHHHHHhccCCceEEEec
Q 016660          267 DGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       267 ~g~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .+.||+||--...   ...++.+.+.|+++ |.++.-.
T Consensus       154 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d~  190 (247)
T 1sui_A          154 HGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN  190 (247)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEEC
T ss_pred             CCCEEEEEEcCchHHHHHHHHHHHHhCCCC-eEEEEec
Confidence            3479999743322   34577899999997 9887643

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.80  E-value=0.025  Score=54.12  Aligned_cols=103  Identities=16%  Similarity=0.184  Sum_probs=69.9

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHH-HcCCC--EEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEE
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGAR-LCGAT--RIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYC  273 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~-~~G~~--~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~v  273 (385)
                      .+....+|||+|+|+||..++.++. ..++.  .|++++..+.+.+..+.+|...+ ...+..+....+..+..++ |+|
T Consensus         9 ~~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~-DvV   87 (480)
T 2ph5_A            9 KILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEEN-DFL   87 (480)
T ss_dssp             CBCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCTT-CEE
T ss_pred             eecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcCC-CEE
Confidence            3455677999999999999887776 45553  67777777666666666775432 2222322223244455544 999


Q ss_pred             EEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          274 FECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       274 id~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ++++-....+..+-.|+..| -.++..+.
T Consensus        88 IN~s~~~~~l~Im~acleaG-v~YlDTa~  115 (480)
T 2ph5_A           88 IDVSIGISSLALIILCNQKG-ALYINAAT  115 (480)
T ss_dssp             EECCSSSCHHHHHHHHHHHT-CEEEESSC
T ss_pred             EECCccccCHHHHHHHHHcC-CCEEECCC
Confidence            99887666677788888886 78888775

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=95.79  E-value=0.019  Score=53.25  Aligned_cols=130  Identities=8%  Similarity=0.025  Sum_probs=76.8

Q ss_pred             EEEEEcCCHHHH-HHHHHHHHc-CCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCCh
Q 016660          204 TVVIFGLGSIGL-AVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLA  280 (385)
Q Consensus       204 ~VlI~G~g~vG~-~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~  280 (385)
                      +|.|+|+|.+|. ..+..++.. ++ +++++.......+++++++...+-.+.+      +.++... .+|+|+.|++..
T Consensus         4 rvgiiG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~a~~~~~~~~~~~~~------~~~ll~~~~~D~V~i~tp~~   76 (349)
T 3i23_A            4 KMGFIGFGKSANRYHLPYVMIRETL-EVKTIFDLHVNEKAAAPFKEKGVNFTAD------LNELLTDPEIELITICTPAH   76 (349)
T ss_dssp             EEEEECCSHHHHHTTHHHHTTCTTE-EEEEEECTTCCHHHHHHHHTTTCEEESC------THHHHSCTTCCEEEECSCGG
T ss_pred             EEEEEccCHHHHHHHHHHHhhCCCe-EEEEEECCCHHHHHHHhhCCCCCeEECC------HHHHhcCCCCCEEEEeCCcH
Confidence            588999999998 677766544 67 5655533334445555543221111222      2344444 799999999988


Q ss_pred             HHHHHHHHHhccCCceEEEeccCCCCCcccccHH------HHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          281 SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF------EVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       281 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~------~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      ...+.+..++..  |+-|++..     ++..+..      ... .++..+.-.  ....+...+..+.+++++|.+
T Consensus        77 ~h~~~~~~al~a--Gk~Vl~EK-----P~a~~~~e~~~l~~~a~~~g~~~~v~--~~~r~~p~~~~~~~~i~~g~i  143 (349)
T 3i23_A           77 THYDLAKQAILA--GKSVIVEK-----PFCDTLEHAEELFALGQEKGVVVMPY--QNRRFDGDYLAMKQVVEQGFL  143 (349)
T ss_dssp             GHHHHHHHHHHT--TCEEEECS-----CSCSSHHHHHHHHHHHHHTTCCEEEC--CGGGGCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHc--CCEEEEEC-----CCcCCHHHHHHHHHHHHHcCCeEEEE--ecccCCHHHHHHHHHHhcCCC
Confidence            878888888888  56666643     2222222      122 234544322  122233567788888888855

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.77  E-value=0.094  Score=46.61  Aligned_cols=90  Identities=14%  Similarity=0.112  Sum_probs=62.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEccCCh-
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFECVGLA-  280 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~~g~~-  280 (385)
                      .+|||+|+|.+|...+..+...|+ +|+++++++++.+.+...++..+ .|..+  .    .   -.++|+||++++.. 
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d--~----~---~~~~d~vi~~a~~~~   75 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLLWPGEE--P----S---LDGVTHLLISTAPDS   75 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTEEEEESSSSC--C----C---CTTCCEEEECCCCBT
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCCeEEEecccc--c----c---cCCCCEEEECCCccc
Confidence            579999999999999999988899 89999999988877776665433 23322  1    1   23799999999753 


Q ss_pred             ---HHHHHHHHHhcc---CCceEEEecc
Q 016660          281 ---SLVQEAYACCRK---GWGKTIVLGV  302 (385)
Q Consensus       281 ---~~~~~~~~~l~~---~~G~~v~~g~  302 (385)
                         ...+..++.++.   +-.+++.++.
T Consensus        76 ~~~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           76 GGDPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             TBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             cccHHHHHHHHHHHhhcCCceEEEEeec
Confidence               212334444433   1157887664

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=95.77  E-value=0.021  Score=51.16  Aligned_cols=94  Identities=16%  Similarity=0.206  Sum_probs=62.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc-----C---------CCe--EEeCCCCCchhHHH
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-----G---------VTE--FVNSKNCGDKSIII  263 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-----g---------~~~--vv~~~~~~~~~~i~  263 (385)
                      ..+.+||++|+|. |..+..+++. +..+|++++.+++..+.+++.     +         ...  ++. .+  ....+.
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~-~D--~~~~l~  148 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-GD--GFEFIK  148 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-SC--HHHHHH
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEE-Cc--hHHHhc
Confidence            4568999998765 6677777777 766999999999988887753     1         111  111 11  111122


Q ss_pred             HhhCCCccEEEEccC----------ChHHHHHHHHHhccCCceEEEec
Q 016660          264 DMTDGGADYCFECVG----------LASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       264 ~~~~g~~d~vid~~g----------~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .  .+.||+|+--..          ....++.+.+.|+++ |.++...
T Consensus       149 ~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~~  193 (281)
T 1mjf_A          149 N--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQA  193 (281)
T ss_dssp             H--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             c--cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            2  457999874332          245578999999997 9988753

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.77  E-value=0.014  Score=54.19  Aligned_cols=91  Identities=19%  Similarity=0.188  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..+   .+      +.++.. ..|+|+-+++.
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~~------l~ell~-~aDvV~l~~Pl  230 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAKFV---ED------LNEMLP-KCDVIVINMPL  230 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCEEC---SC------HHHHGG-GCSEEEECSCC
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCeEc---CC------HHHHHh-cCCEEEECCCC
Confidence            468899999999999999999999999 89999988767777777786432   11      122221 37899888774


Q ss_pred             h-HH---H-HHHHHHhccCCceEEEecc
Q 016660          280 A-SL---V-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~-~~---~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      . .+   + ...+..|+++ ..++.++.
T Consensus       231 t~~t~~li~~~~l~~mk~g-ailIN~aR  257 (351)
T 3jtm_A          231 TEKTRGMFNKELIGKLKKG-VLIVNNAR  257 (351)
T ss_dssp             CTTTTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred             CHHHHHhhcHHHHhcCCCC-CEEEECcC
Confidence            2 11   1 4677888886 78887764

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.74  E-value=0.022  Score=52.02  Aligned_cols=81  Identities=11%  Similarity=0.099  Sum_probs=49.3

Q ss_pred             ccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH--HHHHHHcC--CC-eEEeCCCCCchhHHHHhhCC-C
Q 016660          197 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFG--VT-EFVNSKNCGDKSIIIDMTDG-G  269 (385)
Q Consensus       197 ~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~--~~~~~~lg--~~-~vv~~~~~~~~~~i~~~~~g-~  269 (385)
                      -...++.+|||+|+ |.+|...++.+...|+ +|+++++++++  .+.++.+.  .. .++. -+......+.+...+ +
T Consensus         9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~~~~   86 (335)
T 1rpn_A            9 HHGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGIEGDIQYED-GDMADACSVQRAVIKAQ   86 (335)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTCGGGEEEEE-CCTTCHHHHHHHHHHHC
T ss_pred             cccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCccccccchhhccccCceEEEE-CCCCCHHHHHHHHHHcC
Confidence            34578899999987 9999999999988998 89998877653  12223331  11 1221 121223335555555 6


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|+||++++.
T Consensus        87 ~d~Vih~A~~   96 (335)
T 1rpn_A           87 PQEVYNLAAQ   96 (335)
T ss_dssp             CSEEEECCSC
T ss_pred             CCEEEECccc
Confidence            8999999874

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.74  E-value=0.041  Score=47.76  Aligned_cols=73  Identities=18%  Similarity=0.018  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFEC  276 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~  276 (385)
                      .+.+|||+|+ |.+|...++.+...  |+ +|+++++++++.+.+ .-++..+ .|..   ....+.+... ++|+||++
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~~~~~D~~---d~~~~~~~~~-~~d~vi~~   76 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEADVFIGDIT---DADSINPAFQ-GIDALVIL   76 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTTEEECCTT---SHHHHHHHHT-TCSEEEEC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCeeEEEecCC---CHHHHHHHHc-CCCEEEEe
Confidence            4578999997 99999999988888  78 899998887665433 1122222 2322   2333445443 58999998


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      +|.
T Consensus        77 a~~   79 (253)
T 1xq6_A           77 TSA   79 (253)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            873

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.74  E-value=0.076  Score=47.33  Aligned_cols=89  Identities=17%  Similarity=0.262  Sum_probs=61.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHHcCCCe-EEeCCCCCchhHHHHhhCC-CccEEEEccCCh
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSIIIDMTDG-GADYCFECVGLA  280 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~lg~~~-vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~  280 (385)
                      +|.|+|+|.+|...++.++..|.. +|++.++++++.+.++++|... ..  .+  ..+    .. . ..|+||.|++..
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~--~~--~~~----~~-~~~aDvVilavp~~   73 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGT--TS--IAK----VE-DFSPDFVMLSSPVR   73 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEE--SC--GGG----GG-GTCCSEEEECSCHH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCccccc--CC--HHH----Hh-cCCCCEEEEcCCHH
Confidence            689999999999999998888863 6999999999988888888642 22  11  111    11 2 489999999876


Q ss_pred             HHH---HHHHHHhccCCceEEEecc
Q 016660          281 SLV---QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       281 ~~~---~~~~~~l~~~~G~~v~~g~  302 (385)
                      ...   ......++++ ..++.++.
T Consensus        74 ~~~~v~~~l~~~l~~~-~iv~~~~~   97 (281)
T 2g5c_A           74 TFREIAKKLSYILSED-ATVTDQGS   97 (281)
T ss_dssp             HHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred             HHHHHHHHHHhhCCCC-cEEEECCC
Confidence            532   2333456664 55665554

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.73  E-value=0.036  Score=52.59  Aligned_cols=130  Identities=13%  Similarity=0.055  Sum_probs=82.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc---------CCCEEEEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCC-Ccc
Q 016660          203 STVVIFGLGSIGLAVAEGARLC---------GATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GAD  271 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~---------G~~~vi~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d  271 (385)
                      =+|-|+|+|.+|...+..++..         +++-|-++++++++.+ .++++|...++.  +      ..++... .+|
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~--d------~~~ll~~~~vD   98 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYG--D------WRELVNDPQVD   98 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEES--S------HHHHHHCTTCC
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEEC--C------HHHHhcCCCCC
Confidence            3689999999998877666543         4533444566666655 567788876652  2      2333333 799


Q ss_pred             EEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHH---H---h-hcCcEEEEeeecCCCCCCcHHHHHHHH
Q 016660          272 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE---V---L-HSGKILMGSLFGGLKAKSDIPILLKRY  344 (385)
Q Consensus       272 ~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~---~-~~~~~i~g~~~~~~~~~~~~~~~~~~~  344 (385)
                      +|+-|+......+.+..++..  |+-|++-..     +..+...   +   . .++..+.-.  ..+.+...+..+-+++
T Consensus        99 ~V~I~tp~~~H~~~~~~al~a--GkhVl~EKP-----~a~~~~ea~~l~~~a~~~g~~~~v~--~~~R~~p~~~~~k~~i  169 (412)
T 4gqa_A           99 VVDITSPNHLHYTMAMAAIAA--GKHVYCEKP-----LAVNEQQAQEMAQAARRAGVKTMVA--FNNIKTPAALLAKQII  169 (412)
T ss_dssp             EEEECSCGGGHHHHHHHHHHT--TCEEEEESC-----SCSSHHHHHHHHHHHHHHTCCEEEE--CGGGTSHHHHHHHHHH
T ss_pred             EEEECCCcHHHHHHHHHHHHc--CCCeEeecC-----CcCCHHHHHHHHHHHHHhCCeeeec--cceecCHHHHHHHHHH
Confidence            999999988878899999988  567777543     2222221   1   1 234433322  1233345678888888


Q ss_pred             HcCCC
Q 016660          345 MDKEL  349 (385)
Q Consensus       345 ~~g~~  349 (385)
                      ++|.+
T Consensus       170 ~~G~i  174 (412)
T 4gqa_A          170 ARGDI  174 (412)
T ss_dssp             HHTTT
T ss_pred             hcCCc
Confidence            88865

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.71  E-value=0.027  Score=50.27  Aligned_cols=93  Identities=14%  Similarity=0.254  Sum_probs=59.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      ..+|||+|+|.+|...++.+...|+ +|+++++++++.    .-++..+ .|..+   ...+.+...+.+|+||++++..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----~~~~~~~~~Dl~d---~~~~~~~~~~~~d~vih~a~~~   74 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSAQPM----PAGVQTLIADVTR---PDTLASIVHLRPEILVYCVAAS   74 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTTSCC----CTTCCEEECCTTC---GGGCTTGGGGCCSEEEECHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcccc----ccCCceEEccCCC---hHHHHHhhcCCCCEEEEeCCCC
Confidence            3579999999999999999999999 788888876652    1233322 23333   2223333334599999998642


Q ss_pred             ------------HHHHHHHHHhccC-CceEEEecc
Q 016660          281 ------------SLVQEAYACCRKG-WGKTIVLGV  302 (385)
Q Consensus       281 ------------~~~~~~~~~l~~~-~G~~v~~g~  302 (385)
                                  .....+++.++.. -++++.++.
T Consensus        75 ~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS  109 (286)
T 3gpi_A           75 EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSS  109 (286)
T ss_dssp             HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence                        1133455555543 147887664

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.70  E-value=0.042  Score=48.56  Aligned_cols=79  Identities=23%  Similarity=0.307  Sum_probs=50.4

Q ss_pred             CCCCEEEEEcC-C-HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-H---cCC-C-eE--EeCCCCCchhH-HHHhh--
Q 016660          200 EVGSTVVIFGL-G-SIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R---FGV-T-EF--VNSKNCGDKSI-IIDMT--  266 (385)
Q Consensus       200 ~~~~~VlI~G~-g-~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~---lg~-~-~v--v~~~~~~~~~~-i~~~~--  266 (385)
                      -.+.++||+|+ | ++|...++.+...|+ +|++++++.++.+.+. +   .+. . .+  .|..+...... +.+..  
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            35788999997 7 799999998888999 8999998887755432 2   222 2 12  23333111111 22211  


Q ss_pred             CCCccEEEEccCC
Q 016660          267 DGGADYCFECVGL  279 (385)
Q Consensus       267 ~g~~d~vid~~g~  279 (385)
                      -+.+|++|+++|.
T Consensus        99 ~g~id~li~~Ag~  111 (266)
T 3o38_A           99 AGRLDVLVNNAGL  111 (266)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCcEEEECCCc
Confidence            1369999999984

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.70  E-value=0.062  Score=51.60  Aligned_cols=93  Identities=8%  Similarity=0.031  Sum_probs=58.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEE--eCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFV--NSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv--~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      +.+|+|+|+|.+|..+++.+...|+ +|++++++.++.+.+. +++....+  |..+   ...+.+... ++|+|+++++
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d---~~~l~~~l~-~~DvVIn~a~   77 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVND---DAALDAEVA-KHDLVISLIP   77 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCTTC---HHHHHHHHT-TSSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeecCC---HHHHHHHHc-CCcEEEECCc
Confidence            4679999999999999888888898 7888888877765443 23321122  3222   222334333 6999999998


Q ss_pred             ChHHHHHHHHHhccCCceEEEe
Q 016660          279 LASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      ..........++..+ ..++..
T Consensus        78 ~~~~~~i~~a~l~~g-~~vvd~   98 (450)
T 1ff9_A           78 YTFHATVIKSAIRQK-KHVVTT   98 (450)
T ss_dssp             --CHHHHHHHHHHHT-CEEEES
T ss_pred             cccchHHHHHHHhCC-CeEEEe
Confidence            643233344556664 455444

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.69  E-value=0.028  Score=51.46  Aligned_cols=77  Identities=18%  Similarity=0.200  Sum_probs=49.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH----HHHH-cCCC-eEEeCCCCCchhHHHHhhC-CCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE----IGKR-FGVT-EFVNSKNCGDKSIIIDMTD-GGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~----~~~~-lg~~-~vv~~~~~~~~~~i~~~~~-g~~d~  272 (385)
                      .+.+|||+|+ |.+|...++.+...|+ +|++++++.++..    .+.+ .+.. .++ .-+......+.+... +++|+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d~   81 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNSKREAIARIEKITGKTPAFH-ETDVSDERALARIFDAHPITA   81 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSSCTHHHHHHHHHHSCCCEEE-CCCTTCHHHHHHHHHHSCCCE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcchHHHHHHHHhhcCCCceEE-EeecCCHHHHHHHHhccCCcE
Confidence            4568999997 9999999999999999 8999887654322    1111 1322 222 222223333444443 37999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      ||++++.
T Consensus        82 vih~A~~   88 (341)
T 3enk_A           82 AIHFAAL   88 (341)
T ss_dssp             EEECCCC
T ss_pred             EEECccc
Confidence            9999975

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.68  E-value=0.031  Score=49.80  Aligned_cols=95  Identities=15%  Similarity=0.075  Sum_probs=61.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          204 TVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      +|||+|+ |.+|...++.+...  |+ +|+++++++++.+.+...++..+ .|..+   ...+.+... ++|+||++++.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~D~~d---~~~l~~~~~-~~d~vi~~a~~   76 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGVEVRHGDYNQ---PESLQKAFA-GVSKLLFISGP   76 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTCEEEECCTTC---HHHHHHHTT-TCSEEEECCCC
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCCeEEEeccCC---HHHHHHHHh-cCCEEEEcCCC
Confidence            5899997 99999999888877  88 78888888777665554454332 23322   233444443 59999999874


Q ss_pred             h-------HHHHHHHHHhccC-CceEEEeccC
Q 016660          280 A-------SLVQEAYACCRKG-WGKTIVLGVD  303 (385)
Q Consensus       280 ~-------~~~~~~~~~l~~~-~G~~v~~g~~  303 (385)
                      .       .....+++.+... -++++.++..
T Consensus        77 ~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~  108 (287)
T 2jl1_A           77 HYDNTLLIVQHANVVKAARDAGVKHIAYTGYA  108 (287)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred             CcCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            2       1123344444432 1478887754

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.67  E-value=0.056  Score=52.13  Aligned_cols=94  Identities=10%  Similarity=0.087  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHH-cCCCe-EEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR-FGVTE-FVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~-lg~~~-vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      ++.+|+|+|+|.+|..++..+... |+ +|++++++.++.+.+.+ .+... .+|..+   ...+.+... ++|+||+++
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~~~~~D~~d---~~~l~~~l~-~~DvVIn~t   96 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSKAISLDVTD---DSALDKVLA-DNDVVISLI   96 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCEEEECCTTC---HHHHHHHHH-TSSEEEECS
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCcEEEEecCC---HHHHHHHHc-CCCEEEECC
Confidence            356799999999999988888877 67 79999998888765543 34322 223322   122333222 699999999


Q ss_pred             CChHHHHHHHHHhccCCceEEEe
Q 016660          278 GLASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       278 g~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      +..........++..+ ..++..
T Consensus        97 p~~~~~~v~~a~l~~g-~~vvd~  118 (467)
T 2axq_A           97 PYTFHPNVVKSAIRTK-TDVVTS  118 (467)
T ss_dssp             CGGGHHHHHHHHHHHT-CEEEEC
T ss_pred             chhhhHHHHHHHHhcC-CEEEEe
Confidence            8764333445566664 555554

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.67  E-value=0.075  Score=50.92  Aligned_cols=134  Identities=13%  Similarity=0.099  Sum_probs=81.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHH----HcCC--CeEEeCCCCCchhHHHHhhCC-CccEEE
Q 016660          203 STVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGK----RFGV--TEFVNSKNCGDKSIIIDMTDG-GADYCF  274 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~----~lg~--~~vv~~~~~~~~~~i~~~~~g-~~d~vi  274 (385)
                      -+|.|+|.|.+|...+..++.. +++-+.+.++++++.+.+.    ++|.  ..++...+ .   ...++... .+|+|+
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~-~---~~~~ll~~~~vD~V~   96 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGN-D---DYKNMLKDKNIDAVF   96 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSST-T---THHHHTTCTTCCEEE
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCC-C---CHHHHhcCCCCCEEE
Confidence            3689999999998877766654 6734456677777766543    3454  33443111 0   13455554 799999


Q ss_pred             EccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHH---HH---h-hcCcEEEEeeecCCCCCCcHHHHHHHHHcC
Q 016660          275 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF---EV---L-HSGKILMGSLFGGLKAKSDIPILLKRYMDK  347 (385)
Q Consensus       275 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~---~~---~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g  347 (385)
                      .|++.....+.+..+++.  |+-|++...     +..+..   .+   . .++..+.-.  ....+...+..+.+++++|
T Consensus        97 i~tp~~~h~~~~~~al~a--GkhV~~EKP-----~a~~~~ea~~l~~~a~~~g~~~~v~--~~~r~~p~~~~~~~~i~~G  167 (444)
T 2ixa_A           97 VSSPWEWHHEHGVAAMKA--GKIVGMEVS-----GAITLEECWDYVKVSEQTGVPLMAL--ENVCYRRDVMAILNMVRKG  167 (444)
T ss_dssp             ECCCGGGHHHHHHHHHHT--TCEEEECCC-----CCSSHHHHHHHHHHHHHHCCCEEEC--CGGGGCHHHHHHHHHHHTT
T ss_pred             EcCCcHHHHHHHHHHHHC--CCeEEEeCC-----CcCCHHHHHHHHHHHHHhCCeEEEE--eccccCHHHHHHHHHHHcC
Confidence            999988878888889988  566666432     222221   11   1 234443322  1222334577788889888


Q ss_pred             CC
Q 016660          348 EL  349 (385)
Q Consensus       348 ~~  349 (385)
                      .+
T Consensus       168 ~i  169 (444)
T 2ixa_A          168 MF  169 (444)
T ss_dssp             TT
T ss_pred             CC
Confidence            55

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.66  E-value=0.03  Score=49.87  Aligned_cols=95  Identities=18%  Similarity=0.218  Sum_probs=62.0

Q ss_pred             ccccchhhhhhhhhhhccCCCCCEEEEEcCC-HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCch
Q 016660          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK  259 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g-~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~  259 (385)
                      .+||....+...+.+..---.|.+++|+|.| .+|..+++++...|+ +|+++.+....                     
T Consensus       140 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~---------------------  197 (285)
T 3l07_A          140 LESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFTTD---------------------  197 (285)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSS---------------------
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchh---------------------
Confidence            3555444444333222223588999999985 489999999999999 78887543211                     


Q ss_pred             hHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          260 SIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       260 ~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                        +.+.+. .+|+||.++|.+..+.  .+.++++ ..++.+|..
T Consensus       198 --L~~~~~-~ADIVI~Avg~p~~I~--~~~vk~G-avVIDvgi~  235 (285)
T 3l07_A          198 --LKSHTT-KADILIVAVGKPNFIT--ADMVKEG-AVVIDVGIN  235 (285)
T ss_dssp             --HHHHHT-TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCE
T ss_pred             --HHHhcc-cCCEEEECCCCCCCCC--HHHcCCC-cEEEEeccc
Confidence              122221 4899999999876443  3567886 777888753

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=95.65  E-value=0.0098  Score=55.50  Aligned_cols=92  Identities=20%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.|.+|.|+|.|.+|...++.++.+|+++|++.+++..+.+.+.++|+..+   .+  .    .++.. ..|+|+.+++.
T Consensus       162 l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~---~~--l----~ell~-~aDvV~l~~P~  231 (364)
T 2j6i_A          162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRV---EN--I----EELVA-QADIVTVNAPL  231 (364)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEEC---SS--H----HHHHH-TCSEEEECCCC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEec---CC--H----HHHHh-cCCEEEECCCC
Confidence            468899999999999999999999999339999888766666777775421   11  1    11111 47888888775


Q ss_pred             h----HHH-HHHHHHhccCCceEEEecc
Q 016660          280 A----SLV-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~----~~~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      .    ..+ ...+..|+++ +.++.++.
T Consensus       232 t~~t~~li~~~~l~~mk~g-a~lIn~ar  258 (364)
T 2j6i_A          232 HAGTKGLINKELLSKFKKG-AWLVNTAR  258 (364)
T ss_dssp             STTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred             ChHHHHHhCHHHHhhCCCC-CEEEECCC
Confidence            4    112 3466778886 77777764

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=95.64  E-value=0.016  Score=54.57  Aligned_cols=91  Identities=18%  Similarity=0.096  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.|.+|.|+|.|.+|...++.++.+|. +|++.+++.++.+..+++|+...   .+      +.++.. ..|+|+.++..
T Consensus       189 l~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~~~---~~------l~ell~-~aDvV~l~~Pl  257 (393)
T 2nac_A          189 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH---AT------REDMYP-VCDVVTLNCPL  257 (393)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC---SS------HHHHGG-GCSEEEECSCC
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCceec---CC------HHHHHh-cCCEEEEecCC
Confidence            367899999999999999999999999 89999888766666777776421   11      112211 47888888774


Q ss_pred             hH----HH-HHHHHHhccCCceEEEecc
Q 016660          280 AS----LV-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~----~~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      ..    .+ ...+..|+++ ..++.++.
T Consensus       258 t~~t~~li~~~~l~~mk~g-ailIN~aR  284 (393)
T 2nac_A          258 HPETEHMINDETLKLFKRG-AYIVNTAR  284 (393)
T ss_dssp             CTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             chHHHHHhhHHHHhhCCCC-CEEEECCC
Confidence            31    12 3566778886 77777763

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.64  E-value=0.057  Score=48.92  Aligned_cols=74  Identities=16%  Similarity=0.224  Sum_probs=48.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEc
Q 016660          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFEC  276 (385)
Q Consensus       199 ~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~  276 (385)
                      -++..+|||+|+ |.+|...++.+...|+ +|+++++++++ +.   +++. ++. -+......+.+...+ ++|+||++
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~-~~---l~~~-~~~-~Dl~d~~~~~~~~~~~~~d~vih~   81 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRNNEA-KL---PNVE-MIS-LDIMDSQRVKKVISDIKPDYIFHL   81 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCTTC-CC---TTEE-EEE-CCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCcc-cc---ceee-EEE-CCCCCHHHHHHHHHhcCCCEEEEc
Confidence            356678999987 9999999999988999 89999887654 21   2322 221 121223334444444 69999999


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      ++.
T Consensus        82 A~~   84 (321)
T 2pk3_A           82 AAK   84 (321)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            885

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=95.64  E-value=0.027  Score=50.46  Aligned_cols=90  Identities=17%  Similarity=0.062  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      -.+.++||+|+|++|.+++..+...|+++|+++.++.+|.+.+.+ +.   .+.+.+      +.. .  .+|+||++++
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~---~~~~~~------l~~-l--~~DivInaTp  187 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFK---VISYDE------LSN-L--KGDVIINCTP  187 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSE---EEEHHH------HTT-C--CCSEEEECSS
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcC---cccHHH------HHh-c--cCCEEEECCc
Confidence            357899999999999999999999999889999999888755432 21   222211      222 1  6899999986


Q ss_pred             ChHH-----HHHHHHHhccCCceEEEecc
Q 016660          279 LASL-----VQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       279 ~~~~-----~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ....     .......++++ ..++.+..
T Consensus       188 ~Gm~~~~~~~pi~~~~l~~~-~~v~DlvY  215 (282)
T 3fbt_A          188 KGMYPKEGESPVDKEVVAKF-SSAVDLIY  215 (282)
T ss_dssp             TTSTTSTTCCSSCHHHHTTC-SEEEESCC
T ss_pred             cCccCCCccCCCCHHHcCCC-CEEEEEee
Confidence            4210     01124456664 55555543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=95.63  E-value=0.047  Score=48.31  Aligned_cols=100  Identities=13%  Similarity=0.092  Sum_probs=65.0

Q ss_pred             hhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE--EeCCCCCchhHHHHhhCCCcc
Q 016660          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF--VNSKNCGDKSIIIDMTDGGAD  271 (385)
Q Consensus       194 ~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v--v~~~~~~~~~~i~~~~~g~~d  271 (385)
                      .....+.++.+||=+|+|. |..++.+++. |+ +|++++.+++.++.+++.-....  .+..+....  ......+.||
T Consensus        38 l~~l~l~~g~~VLDlGcGt-G~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~--~~~~~~~~fD  112 (261)
T 3iv6_A           38 IFLENIVPGSTVAVIGAST-RFLIEKALER-GA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAE--IPKELAGHFD  112 (261)
T ss_dssp             HHTTTCCTTCEEEEECTTC-HHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSC--CCGGGTTCCS
T ss_pred             HHhcCCCCcCEEEEEeCcc-hHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHHHhccceeeeeecccc--cccccCCCcc
Confidence            3456778999999999875 7788888875 77 89999999999988876432211  222221110  0011134799


Q ss_pred             EEEEccCC--------hHHHHHHHHHhccCCceEEEe
Q 016660          272 YCFECVGL--------ASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       272 ~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      +|+-...-        ...+..+.+++ ++ |++++.
T Consensus       113 ~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG-G~l~lS  147 (261)
T 3iv6_A          113 FVLNDRLINRFTTEEARRACLGMLSLV-GS-GTVRAS  147 (261)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred             EEEEhhhhHhCCHHHHHHHHHHHHHhC-cC-cEEEEE
Confidence            99864321        13467777888 97 988754

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.63  E-value=0.048  Score=48.39  Aligned_cols=79  Identities=20%  Similarity=0.138  Sum_probs=48.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCCchHHHHH----HHcCCCeEEeCCCCCchhHHH----HhhC--
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTEFVNSKNCGDKSIII----DMTD--  267 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~----~~~~--  267 (385)
                      ..+.++||+|+ |++|...++.+...|+ +|+++ .+++++.+.+    ++.+....+-.-+......+.    ....  
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            45678999987 9999999999999999 67665 6666655433    233433222111212222222    2111  


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|+++|.
T Consensus       103 g~id~li~nAg~  114 (272)
T 4e3z_A          103 GRLDGLVNNAGI  114 (272)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            369999999873

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=95.63  E-value=0.038  Score=49.39  Aligned_cols=95  Identities=14%  Similarity=0.107  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc------CC--C--eEEeCCCCCchhHHHHhhCCCc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF------GV--T--EFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l------g~--~--~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      .+.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.      +.  .  .++..+   ....+. ...+.|
T Consensus        75 ~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D---~~~~l~-~~~~~f  149 (275)
T 1iy9_A           75 NPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD---GFMHIA-KSENQY  149 (275)
T ss_dssp             SCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESC---SHHHHH-TCCSCE
T ss_pred             CCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECc---HHHHHh-hCCCCe
Confidence            568999998764 66677788776766999999999988887752      11  1  222221   111122 223479


Q ss_pred             cEEEEccCC----------hHHHHHHHHHhccCCceEEEec
Q 016660          271 DYCFECVGL----------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       271 d~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      |+|+--...          ...++.+.+.|+++ |.++...
T Consensus       150 D~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pg-G~lv~~~  189 (275)
T 1iy9_A          150 DVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT  189 (275)
T ss_dssp             EEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            999753322          45688999999997 9988764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.61  E-value=0.021  Score=48.99  Aligned_cols=103  Identities=15%  Similarity=0.140  Sum_probs=66.2

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhC----
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTD----  267 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~----  267 (385)
                      ....++.+||=+|+|. |..++.+++..+ ..+|++++.+++..+.+++    .|...-+.....+....+..+..    
T Consensus        60 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  138 (225)
T 3tr6_A           60 VKLMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQA  138 (225)
T ss_dssp             HHHHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCT
T ss_pred             HHhhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCC
Confidence            3456788999999875 788888888763 3399999999988877664    35432111111112222223322    


Q ss_pred             CCccEEEEccCC---hHHHHHHHHHhccCCceEEEec
Q 016660          268 GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       268 g~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +.||+||-....   ...++.+.+.|+++ |.++.-.
T Consensus       139 ~~fD~v~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  174 (225)
T 3tr6_A          139 WQYDLIYIDADKANTDLYYEESLKLLREG-GLIAVDN  174 (225)
T ss_dssp             TCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCccEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEeC
Confidence            579999843332   34478889999997 9888654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=95.59  E-value=0.027  Score=48.51  Aligned_cols=96  Identities=14%  Similarity=0.125  Sum_probs=68.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eEEeCCCCCchhHHHHhh-CCCccEEEEc
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSIIIDMT-DGGADYCFEC  276 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vv~~~~~~~~~~i~~~~-~g~~d~vid~  276 (385)
                      +.++.+||=+|+|. |..+..+++. |. +|++++.++..++.+++.... .++..+-...    ..+. .+.||+|+..
T Consensus        46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~----~~~~~~~~fD~v~~~  118 (226)
T 3m33_A           46 LTPQTRVLEAGCGH-GPDAARFGPQ-AA-RWAAYDFSPELLKLARANAPHADVYEWNGKGE----LPAGLGAPFGLIVSR  118 (226)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHCTTSEEEECCSCSS----CCTTCCCCEEEEEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHc-CC-EEEEEECCHHHHHHHHHhCCCceEEEcchhhc----cCCcCCCCEEEEEeC
Confidence            46789999999865 6777777777 77 999999999998888775322 2222211011    1122 3479999988


Q ss_pred             cCChHHHHHHHHHhccCCceEEEecc
Q 016660          277 VGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       277 ~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ..-...+..+.+.|+++ |+++..+.
T Consensus       119 ~~~~~~l~~~~~~Lkpg-G~l~~~~~  143 (226)
T 3m33_A          119 RGPTSVILRLPELAAPD-AHFLYVGP  143 (226)
T ss_dssp             SCCSGGGGGHHHHEEEE-EEEEEEES
T ss_pred             CCHHHHHHHHHHHcCCC-cEEEEeCC
Confidence            76667789999999997 99995543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=95.59  E-value=0.058  Score=47.33  Aligned_cols=101  Identities=20%  Similarity=0.336  Sum_probs=67.3

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc----CCCe--EEeCCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTE--FVNSKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~~--vv~~~~~~~~~~i~~~~  266 (385)
                      +.......++.+||-+|+| .|..+..+++.. . +|++++.+++.++.+++.    |...  ++..+- ..    ..+.
T Consensus        29 l~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~~-~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~----l~~~  100 (260)
T 1vl5_A           29 LMQIAALKGNEEVLDVATG-GGHVANAFAPFV-K-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQ----MPFT  100 (260)
T ss_dssp             HHHHHTCCSCCEEEEETCT-TCHHHHHHGGGS-S-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--C----CCSC
T ss_pred             HHHHhCCCCCCEEEEEeCC-CCHHHHHHHHhC-C-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH-Hh----CCCC
Confidence            3445567789999999987 477777777764 4 899999999888877653    3322  222111 01    0122


Q ss_pred             CCCccEEEEccCC------hHHHHHHHHHhccCCceEEEecc
Q 016660          267 DGGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       267 ~g~~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ++.||+|+....-      ...+.++.+.|+++ |+++....
T Consensus       101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~~~~~  141 (260)
T 1vl5_A          101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVDN  141 (260)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC-CEEEEEEc
Confidence            3479999876432      35578999999997 99887643

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=95.59  E-value=0.032  Score=51.14  Aligned_cols=135  Identities=13%  Similarity=0.101  Sum_probs=78.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc-CCCEEE-EEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccC
Q 016660          203 STVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG  278 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~-G~~~vi-~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g  278 (385)
                      -+|.|+|+|.+|...+..++.. ++ .++ +.++++++.+ +++++|...+++  +      ..++... .+|+|+.+++
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~-~~~av~d~~~~~~~~~a~~~~~~~~~~--~------~~~ll~~~~~D~V~i~tp   76 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNG-EVVAVSSRTLESAQAFANKYHLPKAYD--K------LEDMLADESIDVIYVATI   76 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSE-EEEEEECSCSSTTCC---CCCCSCEES--C------HHHHHTCTTCCEEEECSC
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHHHcCCCcccC--C------HHHHhcCCCCCEEEECCC
Confidence            3689999999998777666644 56 444 5566666544 445566643331  1      3344444 7999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCCCCCccc-ccHHHHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  350 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~  350 (385)
                      .....+.+..++..  |+-|++.......... ..+.... .++..+.-.  ....+...+..+.+++++|.+-
T Consensus        77 ~~~h~~~~~~al~a--Gk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~--~~~r~~p~~~~~~~~i~~g~iG  146 (329)
T 3evn_A           77 NQDHYKVAKAALLA--GKHVLVEKPFTLTYDQANELFALAESCNLFLMEA--QKSVFIPMTQVIKKLLASGEIG  146 (329)
T ss_dssp             GGGHHHHHHHHHHT--TCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEE--CSSCSSHHHHHHHHHHHTTTTC
T ss_pred             cHHHHHHHHHHHHC--CCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEE--EcccCCHHHHHHHHHHhCCCCC
Confidence            88878888888888  5656664321111000 1111122 234444322  2233345678888899888653

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.58  E-value=0.049  Score=48.58  Aligned_cols=79  Identities=16%  Similarity=0.211  Sum_probs=49.1

Q ss_pred             CCCCEEEEEcC-CH--HHHHHHHHHHHcCCCEEEEEcCCc--hHHHHHH-HcCCCeEE--eCCCCCchhH-HHHhh--CC
Q 016660          200 EVGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVIS--EKFEIGK-RFGVTEFV--NSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       200 ~~~~~VlI~G~-g~--vG~~ai~la~~~G~~~vi~~~~~~--~~~~~~~-~lg~~~vv--~~~~~~~~~~-i~~~~--~g  268 (385)
                      -++.++||+|+ |.  +|...++.+...|+ +|++++++.  +..+.+. +.+...++  |..+...... +.+..  -+
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWD  102 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcC
Confidence            45788999985 44  99999998888999 899988876  4444443 33332232  3333111111 22211  23


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      .+|++|+++|.
T Consensus       103 ~id~li~nAg~  113 (280)
T 3nrc_A          103 GLDAIVHSIAF  113 (280)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            69999999874

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=95.58  E-value=0.048  Score=50.07  Aligned_cols=130  Identities=8%  Similarity=0.069  Sum_probs=80.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC---CCEEEEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccC
Q 016660          204 TVVIFGLGSIGLAVAEGARLCG---ATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG  278 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G---~~~vi~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g  278 (385)
                      +|.|+|+|.+|...+..++...   ++-+.+.++++++.+ +++++|...++.  +      ..++... .+|+|+-++.
T Consensus         4 rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~--~------~~~ll~~~~vD~V~i~tp   75 (334)
T 3ohs_X            4 RWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYG--S------YEELAKDPNVEVAYVGTQ   75 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEES--S------HHHHHHCTTCCEEEECCC
T ss_pred             EEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccC--C------HHHHhcCCCCCEEEECCC
Confidence            5889999999998777666543   323444566666654 556788754432  2      2333333 7999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCCCCCcccccHH------HHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF------EVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  350 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~------~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~  350 (385)
                      .....+.+..++..  |+-|++-..     +..+..      ... .++..+.-..  ...+...+..+.+++++|.+-
T Consensus        76 ~~~H~~~~~~al~~--GkhVl~EKP-----~a~~~~e~~~l~~~a~~~~~~~~v~~--~~r~~p~~~~~k~~i~~g~iG  145 (334)
T 3ohs_X           76 HPQHKAAVMLCLAA--GKAVLCEKP-----MGVNAAEVREMVTEARSRGLFLMEAI--WTRFFPASEALRSVLAQGTLG  145 (334)
T ss_dssp             GGGHHHHHHHHHHT--TCEEEEESS-----SSSSHHHHHHHHHHHHHTTCCEEEEC--GGGGSHHHHHHHHHHHHTTTC
T ss_pred             cHHHHHHHHHHHhc--CCEEEEECC-----CCCCHHHHHHHHHHHHHhCCEEEEEE--hHhcCHHHHHHHHHHhcCCCC
Confidence            88878888888888  566666532     222221      122 2344443221  222335678888888888653

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=95.58  E-value=0.052  Score=45.91  Aligned_cols=97  Identities=15%  Similarity=0.138  Sum_probs=62.3

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc-CC---------------C--eEEeCCCC
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV---------------T--EFVNSKNC  256 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-g~---------------~--~vv~~~~~  256 (385)
                      ....+.++.+||-+|+|. |..+..+++. |+ +|+++|.+++-++.+++. +.               .  .++..+-.
T Consensus        16 ~~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~   92 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   92 (203)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HhcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence            344567889999999865 6677778876 88 999999999988887653 11               1  11111110


Q ss_pred             CchhHHHHhhC-CCccEEEEccCC--------hHHHHHHHHHhccCCceEEEe
Q 016660          257 GDKSIIIDMTD-GGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       257 ~~~~~i~~~~~-g~~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      ...     ... +.||+|++...-        ...++++.+.|+++ |+++++
T Consensus        93 ~l~-----~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg-G~~~l~  139 (203)
T 1pjz_A           93 ALT-----ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLI  139 (203)
T ss_dssp             SST-----HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEE
T ss_pred             cCC-----cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC-cEEEEE
Confidence            110     111 369999974321        12467889999997 984444

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=95.58  E-value=0.022  Score=48.79  Aligned_cols=103  Identities=15%  Similarity=0.162  Sum_probs=65.8

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhC---
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTD---  267 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~---  267 (385)
                      ....++.+||-+|+|. |..++.+++..  +. +|++++.+++..+.+++    .|...-+.....+....+..+..   
T Consensus        54 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  131 (223)
T 3duw_A           54 VQIQGARNILEIGTLG-GYSTIWLARGLSSGG-RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKY  131 (223)
T ss_dssp             HHHHTCSEEEEECCTT-SHHHHHHHTTCCSSC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTC
T ss_pred             HHhhCCCEEEEecCCc-cHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCC
Confidence            3456788999999874 78888888876  45 99999999988877653    45432111111112222222221   


Q ss_pred             CCccEEEEccCC---hHHHHHHHHHhccCCceEEEecc
Q 016660          268 GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       268 g~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +.||+||-....   ...++.+.+.|+++ |.++.-..
T Consensus       132 ~~fD~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~~  168 (223)
T 3duw_A          132 EPFDFIFIDADKQNNPAYFEWALKLSRPG-TVIIGDNV  168 (223)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEESC
T ss_pred             CCcCEEEEcCCcHHHHHHHHHHHHhcCCC-cEEEEeCC
Confidence            369999843322   34578889999997 97776543

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.56  E-value=0.034  Score=49.49  Aligned_cols=94  Identities=18%  Similarity=0.194  Sum_probs=61.9

Q ss_pred             cccchhhhhhhhhhhccCCCCCEEEEEcCC-HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchh
Q 016660          182 LSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS  260 (385)
Q Consensus       182 l~~~~~ta~~al~~~~~~~~~~~VlI~G~g-~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~  260 (385)
                      +||....+...+.+..---.|.+++|+|.| .+|..+++++...|+ +|+++.+..+.                      
T Consensus       140 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t~~----------------------  196 (285)
T 3p2o_A          140 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKTKD----------------------  196 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSC----------------------
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCchh----------------------
Confidence            454433333323222223589999999985 589999999999999 88888643221                      


Q ss_pred             HHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          261 IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       261 ~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                       +.+.+. .+|+||.++|.+..+.  .+.++++ ..++.+|..
T Consensus       197 -L~~~~~-~ADIVI~Avg~p~~I~--~~~vk~G-avVIDVgi~  234 (285)
T 3p2o_A          197 -LSLYTR-QADLIIVAAGCVNLLR--SDMVKEG-VIVVDVGIN  234 (285)
T ss_dssp             -HHHHHT-TCSEEEECSSCTTCBC--GGGSCTT-EEEEECCCE
T ss_pred             -HHHHhh-cCCEEEECCCCCCcCC--HHHcCCC-eEEEEeccC
Confidence             122221 4899999999876443  3567886 777888754

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.55  E-value=0.093  Score=47.13  Aligned_cols=36  Identities=28%  Similarity=0.412  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .+.+|+|+|+|++|-.+++.+-..|+.++..+|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            457899999999999999999999999999998654

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.55  E-value=0.017  Score=50.64  Aligned_cols=74  Identities=20%  Similarity=0.175  Sum_probs=47.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhH-HHHhh--CCCccEEEEc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSI-IIDMT--DGGADYCFEC  276 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~-i~~~~--~g~~d~vid~  276 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+.  +  ...|..+...... +....  -+++|++|++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~--~--~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~   88 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF--G--VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   88 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE--E--EECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHhc--C--eeccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            4678999987 9999999999989999 8999888765433221  1  2234433211111 21111  1368999999


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      +|.
T Consensus        89 Ag~   91 (247)
T 1uzm_A           89 AGL   91 (247)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            884

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=95.55  E-value=0.044  Score=52.37  Aligned_cols=132  Identities=17%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             EEEEEcCCHHHH-HHHHHHHHc-CCCEEEEEcCCchHHH-HHHHcCCCe--EEeCCCCCchhHHHHhhCC-CccEEEEcc
Q 016660          204 TVVIFGLGSIGL-AVAEGARLC-GATRIIGVDVISEKFE-IGKRFGVTE--FVNSKNCGDKSIIIDMTDG-GADYCFECV  277 (385)
Q Consensus       204 ~VlI~G~g~vG~-~ai~la~~~-G~~~vi~~~~~~~~~~-~~~~lg~~~--vv~~~~~~~~~~i~~~~~g-~~d~vid~~  277 (385)
                      +|.|+|+|.+|. ..+..++.. +++-+.++++++++.+ +++++|...  +..+.+      ..++... .+|+|+.|+
T Consensus        85 rigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~------~~~ll~~~~vD~V~iat  158 (433)
T 1h6d_A           85 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN------FDKIAKDPKIDAVYIIL  158 (433)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSS------GGGGGGCTTCCEEEECS
T ss_pred             EEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCC------HHHHhcCCCCCEEEEcC
Confidence            689999999996 566555543 5633456677776655 455677642  222333      2333333 799999999


Q ss_pred             CChHHHHHHHHHhccCCceEEEeccCCCCCcccccHH---HH---h-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCC
Q 016660          278 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF---EV---L-HSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  350 (385)
Q Consensus       278 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~---~~---~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~  350 (385)
                      ......+.+..++..  |+-|++...     +..+..   .+   . .++..+.-.  ..+.+...+..+.+++++|.+-
T Consensus       159 p~~~h~~~~~~al~a--Gk~Vl~EKP-----la~~~~e~~~l~~~a~~~g~~~~v~--~~~R~~p~~~~~k~~i~~G~iG  229 (433)
T 1h6d_A          159 PNSLHAEFAIRAFKA--GKHVMCEKP-----MATSVADCQRMIDAAKAANKKLMIG--YRCHYDPMNRAAVKLIRENQLG  229 (433)
T ss_dssp             CGGGHHHHHHHHHHT--TCEEEECSS-----CCSSHHHHHHHHHHHHHHTCCEEEC--CGGGGCHHHHHHHHHHHTTSSC
T ss_pred             CchhHHHHHHHHHHC--CCcEEEcCC-----CCCCHHHHHHHHHHHHHhCCeEEEE--echhcCHHHHHHHHHHHcCCCC
Confidence            988878888888888  455555432     222221   11   1 234444322  1223335678888899888553

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=95.54  E-value=0.071  Score=47.93  Aligned_cols=45  Identities=22%  Similarity=0.271  Sum_probs=36.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l  245 (385)
                      .++.+||=+|+|. |..++.+++..+..+|++++.++.-++.+++.
T Consensus        45 ~~~~~VLDiGCG~-G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           45 FRGRDVLDLGCNV-GHLTLSIACKWGPSRMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             TTTSEEEEESCTT-CHHHHHHHHHTCCSEEEEEESCHHHHHHHHHT
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence            4678999999865 78888999987655999999999888877753

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.53  E-value=0.11  Score=45.58  Aligned_cols=35  Identities=29%  Similarity=0.338  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .+.+|+|+|+|++|..++..+...|+.++..++.+
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35789999999999999999999999889888654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.53  E-value=0.037  Score=46.83  Aligned_cols=96  Identities=15%  Similarity=0.108  Sum_probs=64.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC----eEEeCCCCCchhHHHHhhCCCccEEE
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT----EFVNSKNCGDKSIIIDMTDGGADYCF  274 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~----~vv~~~~~~~~~~i~~~~~g~~d~vi  274 (385)
                      +.++.+||-+|+|. |..+..+++. |..+|++++.++...+.+++....    .++..+-...     .+..+.||+|+
T Consensus        40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~v~  112 (215)
T 2pxx_A           40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKL-----DFPSASFDVVL  112 (215)
T ss_dssp             CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSC-----CSCSSCEEEEE
T ss_pred             cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcC-----CCCCCcccEEE
Confidence            47889999999876 7777777776 544899999999988888764321    2222211000     12234799999


Q ss_pred             EccC---------------------ChHHHHHHHHHhccCCceEEEecc
Q 016660          275 ECVG---------------------LASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       275 d~~g---------------------~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ....                     ....++.+.+.|+++ |++++...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~  160 (215)
T 2pxx_A          113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG-GRFISMTS  160 (215)
T ss_dssp             EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             ECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC-CEEEEEeC
Confidence            6321                     134578889999997 99988754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=95.52  E-value=0.068  Score=45.86  Aligned_cols=102  Identities=16%  Similarity=0.205  Sum_probs=64.5

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhCCC
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~g~  269 (385)
                      ....+.++++||-+|+|. |..+..+++..|. .+|++++.+++..+.+++    ..--.++..+- .... ......+.
T Consensus        67 ~~~~~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~-~~~~-~~~~~~~~  143 (227)
T 1g8a_A           67 KNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA-TKPE-EYRALVPK  143 (227)
T ss_dssp             CCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT-TCGG-GGTTTCCC
T ss_pred             HhcCCCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccC-CCcc-hhhcccCC
Confidence            334578899999999876 8888888887652 389999999876554433    21112222211 1100 00111236


Q ss_pred             ccEEEEccCCh----HHHHHHHHHhccCCceEEEe
Q 016660          270 ADYCFECVGLA----SLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       270 ~d~vid~~g~~----~~~~~~~~~l~~~~G~~v~~  300 (385)
                      ||+|+-....+    ..+..+.+.|+++ |.++..
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~  177 (227)
T 1g8a_A          144 VDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ceEEEECCCCHhHHHHHHHHHHHhcCCC-CEEEEE
Confidence            99998655443    2277889999997 998876

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=95.51  E-value=0.037  Score=49.93  Aligned_cols=78  Identities=15%  Similarity=0.146  Sum_probs=50.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHc---CC-C-eE--EeCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF---GV-T-EF--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l---g~-~-~v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      .+.++||.|+ |++|...++.+...|+ +|+++++++++.+.+ +++   +. . ..  .|..+...... +....  -+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            5778999987 9999999999999999 899998888765543 222   31 1 12  23333111111 22221  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus       119 ~iD~lvnnAg~  129 (293)
T 3rih_A          119 ALDVVCANAGI  129 (293)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999884

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.51  E-value=0.059  Score=49.64  Aligned_cols=133  Identities=10%  Similarity=-0.041  Sum_probs=82.1

Q ss_pred             CCCCEEEEEcCC-HHHHHHHHHHHHc--CCCEEEEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEE
Q 016660          200 EVGSTVVIFGLG-SIGLAVAEGARLC--GATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCF  274 (385)
Q Consensus       200 ~~~~~VlI~G~g-~vG~~ai~la~~~--G~~~vi~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vi  274 (385)
                      ...-+|.|+|+| .+|...+..++..  +++-+.++++++++.+ +++++|...+++  +      ..++... .+|+|+
T Consensus        16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~--~------~~~ll~~~~vD~V~   87 (340)
T 1zh8_A           16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD--S------YEELLESGLVDAVD   87 (340)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES--C------HHHHHHSSCCSEEE
T ss_pred             CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccC--C------HHHHhcCCCCCEEE
Confidence            334468899999 7898777777655  5634456666777665 456677644432  2      3333333 799999


Q ss_pred             EccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHH------Hh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcC
Q 016660          275 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------VL-HSGKILMGSLFGGLKAKSDIPILLKRYMDK  347 (385)
Q Consensus       275 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g  347 (385)
                      .+++.....+.+..+++.  |+-|++...     +..+...      .. .++..+.-.  ....+...+..+.+++++|
T Consensus        88 i~tp~~~H~~~~~~al~a--GkhVl~EKP-----la~~~~ea~~l~~~a~~~g~~~~v~--~~~R~~p~~~~~k~~i~~g  158 (340)
T 1zh8_A           88 LTLPVELNLPFIEKALRK--GVHVICEKP-----ISTDVETGKKVVELSEKSEKTVYIA--ENFRHVPAFWKAKELVESG  158 (340)
T ss_dssp             ECCCGGGHHHHHHHHHHT--TCEEEEESS-----SSSSHHHHHHHHHHHHHCSSCEEEE--CGGGGCHHHHHHHHHHHTT
T ss_pred             EeCCchHHHHHHHHHHHC--CCcEEEeCC-----CCCCHHHHHHHHHHHHHcCCeEEEE--ecccCCHHHHHHHHHHhcC
Confidence            999988778888888888  566666432     2222221      12 234443322  1233345678888889888


Q ss_pred             CC
Q 016660          348 EL  349 (385)
Q Consensus       348 ~~  349 (385)
                      .+
T Consensus       159 ~i  160 (340)
T 1zh8_A          159 AI  160 (340)
T ss_dssp             TT
T ss_pred             CC
Confidence            55

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.50  E-value=0.0097  Score=52.34  Aligned_cols=91  Identities=24%  Similarity=0.321  Sum_probs=56.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhC---CCccEEEEccC
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTD---GGADYCFECVG  278 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~---g~~d~vid~~g  278 (385)
                      .++||+|+ |++|...++.+...|+ +|+++++++++.+.      ....|..+   ...+.+...   +++|++|+++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~------~~~~Dl~~---~~~v~~~~~~~~~~id~lv~~Ag   71 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA------DLSTAEGR---KQAIADVLAKCSKGMDGLVLCAG   71 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------CTTSHHHH---HHHHHHHHTTCTTCCSEEEECCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc------ccccCCCC---HHHHHHHHHHhCCCCCEEEECCC
Confidence            36899987 9999999999988999 89998887654221      10011111   111333222   46899999988


Q ss_pred             ChH------------------HHHHHHHHhcc-CCceEEEeccC
Q 016660          279 LAS------------------LVQEAYACCRK-GWGKTIVLGVD  303 (385)
Q Consensus       279 ~~~------------------~~~~~~~~l~~-~~G~~v~~g~~  303 (385)
                      ...                  ..+.++..+.+ +.|++|.++..
T Consensus        72 ~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~  115 (257)
T 1fjh_A           72 LGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSV  115 (257)
T ss_dssp             CCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             CCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECCh
Confidence            532                  13344555533 22789988754

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=95.50  E-value=0.065  Score=46.44  Aligned_cols=96  Identities=16%  Similarity=0.130  Sum_probs=63.8

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      .++++.+||=+|+|. |..+..+++. |+ +|++++.+++..+.+++.  ..++.. +  .......+.++.||+|+...
T Consensus        38 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~~~--~~~~~~-d--~~~~~~~~~~~~fD~i~~~~  109 (240)
T 3dli_A           38 YFKGCRRVLDIGCGR-GEFLELCKEE-GI-ESIGVDINEDMIKFCEGK--FNVVKS-D--AIEYLKSLPDKYLDGVMISH  109 (240)
T ss_dssp             GTTTCSCEEEETCTT-THHHHHHHHH-TC-CEEEECSCHHHHHHHHTT--SEEECS-C--HHHHHHTSCTTCBSEEEEES
T ss_pred             hhcCCCeEEEEeCCC-CHHHHHHHhC-CC-cEEEEECCHHHHHHHHhh--cceeec-c--HHHHhhhcCCCCeeEEEECC
Confidence            356789999998764 5556666665 87 799999999998888875  222211 1  11111123334799998632


Q ss_pred             -----CC---hHHHHHHHHHhccCCceEEEecc
Q 016660          278 -----GL---ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       278 -----g~---~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                           +.   ...++++.+.|+++ |.++....
T Consensus       110 ~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  141 (240)
T 3dli_A          110 FVEHLDPERLFELLSLCYSKMKYS-SYIVIESP  141 (240)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHBCTT-CCEEEEEE
T ss_pred             chhhCCcHHHHHHHHHHHHHcCCC-cEEEEEeC
Confidence                 22   35578899999997 99886543

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.49  E-value=0.043  Score=48.27  Aligned_cols=78  Identities=21%  Similarity=0.258  Sum_probs=48.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH-HHH----HcCCCe-E--EeCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGK----RFGVTE-F--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~----~lg~~~-v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      .+.++||+|+ |++|...++.+...|+ +|++++++.++.+ ..+    +.+... .  .|..+...... +....  -+
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   91 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG   91 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            4568999987 9999999999888999 8988888554332 222    234332 2  23333111111 22211  23


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      .+|++|+++|.
T Consensus        92 ~id~li~~Ag~  102 (265)
T 1h5q_A           92 PISGLIANAGV  102 (265)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            69999999874

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.48  E-value=0.08  Score=48.69  Aligned_cols=88  Identities=25%  Similarity=0.358  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.+.+|.|+|.|.+|...++.++..|. +|++.+++.++ +.+.++|+..    .+  ..+.+ .    ..|+|+.+++.
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~----~~--l~~~l-~----~aDvVil~vp~  214 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNAEF----KP--LEDLL-R----ESDFVVLAVPL  214 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCCEE----CC--HHHHH-H----HCSEEEECCCC
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCccc----CC--HHHHH-h----hCCEEEECCCC
Confidence            356789999999999999999999999 89999988877 5566666531    11  11111 1    36889888875


Q ss_pred             hH----HH-HHHHHHhccCCceEEEec
Q 016660          280 AS----LV-QEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       280 ~~----~~-~~~~~~l~~~~G~~v~~g  301 (385)
                      ..    .+ ......++++ ..++.++
T Consensus       215 ~~~t~~~i~~~~~~~mk~~-ailIn~s  240 (334)
T 2dbq_A          215 TRETYHLINEERLKLMKKT-AILINIA  240 (334)
T ss_dssp             CTTTTTCBCHHHHHHSCTT-CEEEECS
T ss_pred             ChHHHHhhCHHHHhcCCCC-cEEEECC
Confidence            43    12 3556778885 7777665

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=95.46  E-value=0.049  Score=47.37  Aligned_cols=102  Identities=17%  Similarity=0.195  Sum_probs=65.0

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhh----
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMT----  266 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~----  266 (385)
                      ....++.+||-+|+|. |..++.+|+.+  +. +|++++.+++..+.+++    .|...-+.....+....+..+.    
T Consensus        66 ~~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~  143 (237)
T 3c3y_A           66 LKLVNAKKTIEVGVFT-GYSLLLTALSIPDDG-KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQE  143 (237)
T ss_dssp             HHHTTCCEEEEECCTT-SHHHHHHHHHSCTTC-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTT
T ss_pred             HHhhCCCEEEEeCCCC-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccC
Confidence            3445678999998864 77788888876  44 99999999998887754    4543211111111222222231    


Q ss_pred             -CCCccEEEEccCC---hHHHHHHHHHhccCCceEEEec
Q 016660          267 -DGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       267 -~g~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                       .+.||+||--...   ...++.+.+.|++| |.++.-.
T Consensus       144 ~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pG-G~lv~d~  181 (237)
T 3c3y_A          144 SEGSYDFGFVDADKPNYIKYHERLMKLVKVG-GIVAYDN  181 (237)
T ss_dssp             CTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCCcCEEEECCchHHHHHHHHHHHHhcCCC-eEEEEec
Confidence             3479999744332   34478889999997 9887643

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.45  E-value=0.063  Score=49.68  Aligned_cols=91  Identities=20%  Similarity=0.272  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~-~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      -.+.+|.|+|.|.+|...++.++ ..|. +|++.+++.++.+...++|+..+   .+  ..+ +..    ..|+|+.++.
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---~~--l~e-ll~----~aDvVil~vp  229 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAERV---DS--LEE-LAR----RSDCVSVSVP  229 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCEEC---SS--HHH-HHH----HCSEEEECCC
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcEEe---CC--HHH-Hhc----cCCEEEEeCC
Confidence            45789999999999999999999 9999 89999988777666666675421   11  111 111    3688888876


Q ss_pred             ChH----HH-HHHHHHhccCCceEEEecc
Q 016660          279 LAS----LV-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       279 ~~~----~~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      ...    .+ ...+..++++ ..++.++.
T Consensus       230 ~~~~t~~li~~~~l~~mk~g-ailin~sr  257 (348)
T 2w2k_A          230 YMKLTHHLIDEAFFAAMKPG-SRIVNTAR  257 (348)
T ss_dssp             CSGGGTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred             CChHHHHHhhHHHHhcCCCC-CEEEECCC
Confidence            532    12 3456677775 66666553

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.45  E-value=0.047  Score=48.96  Aligned_cols=97  Identities=19%  Similarity=0.221  Sum_probs=62.7

Q ss_pred             ccccchhhhhhhhhhhccCCCCCEEEEEcCC-HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCch
Q 016660          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK  259 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g-~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~  259 (385)
                      .+||....+...+.+..---.|.+++|+|.| .+|..+++++...|+ .|+++.+....+++                  
T Consensus       144 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~~l~l------------------  204 (300)
T 4a26_A          144 FTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTSTEDM------------------  204 (300)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSCHHHH------------------
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCCCchh------------------
Confidence            3455444444333333233589999999985 589999999999999 88888763332220                  


Q ss_pred             hHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          260 SIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       260 ~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                         .+.+. .+|+||.++|.+..+..  +.++++ ..++.+|..
T Consensus       205 ---~~~~~-~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~  241 (300)
T 4a26_A          205 ---IDYLR-TADIVIAAMGQPGYVKG--EWIKEG-AAVVDVGTT  241 (300)
T ss_dssp             ---HHHHH-TCSEEEECSCCTTCBCG--GGSCTT-CEEEECCCE
T ss_pred             ---hhhhc-cCCEEEECCCCCCCCcH--HhcCCC-cEEEEEecc
Confidence               01111 37999999998764432  457886 777888753

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.40  E-value=0.063  Score=47.68  Aligned_cols=95  Identities=13%  Similarity=0.114  Sum_probs=59.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          204 TVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      +|||+|+ |.+|...++.+...  |+ +|+++++++++.+.+...++..+ .|..+   ...+.+... ++|+||++++.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d---~~~~~~~~~-~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGITVRQADYGD---EAALTSALQ-GVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTCHHHHHTTCEEEECCTTC---HHHHHHHTT-TCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChHhhhhhhcCCCeEEEcCCCC---HHHHHHHHh-CCCEEEEeCCC
Confidence            4899997 99999999888877  88 78888888776655544454322 23322   233444443 58999999875


Q ss_pred             h-----HHHHHHHHHhcc-CCceEEEeccC
Q 016660          280 A-----SLVQEAYACCRK-GWGKTIVLGVD  303 (385)
Q Consensus       280 ~-----~~~~~~~~~l~~-~~G~~v~~g~~  303 (385)
                      .     .....+++.+.. +-++++.++..
T Consensus        76 ~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~  105 (286)
T 2zcu_A           76 EVGQRAPQHRNVINAAKAAGVKFIAYTSLL  105 (286)
T ss_dssp             ------CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             CchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            2     112334444433 21578887754

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.40  E-value=0.025  Score=52.31  Aligned_cols=76  Identities=13%  Similarity=0.128  Sum_probs=49.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHc--CC-CeEEeCCCCCchhHHHHhhCC-CccEEEE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF--GV-TEFVNSKNCGDKSIIIDMTDG-GADYCFE  275 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l--g~-~~vv~~~~~~~~~~i~~~~~g-~~d~vid  275 (385)
                      +.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+ ..+  +. -.++.. +......+.+...+ ++|+||+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-Dl~d~~~~~~~~~~~~~d~vih   86 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIG-DIRDQNKLLESIREFQPEIVFH   86 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEEC-CTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcccchhhHhhccCCceEEEEc-cccCHHHHHHHHHhcCCCEEEE
Confidence            568999997 9999999999988999 899998876543222 211  11 122221 21223334454444 6999999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      +++.
T Consensus        87 ~A~~   90 (357)
T 1rkx_A           87 MAAQ   90 (357)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            9984

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=95.39  E-value=0.12  Score=47.03  Aligned_cols=101  Identities=17%  Similarity=0.207  Sum_probs=65.6

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHH----cCCCeE-EeCCCCCchhHHHHhhCCC
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEF-VNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~~v-v~~~~~~~~~~i~~~~~g~  269 (385)
                      ...++++++||=+|+|+ |..++++++.++ ..+|++++.++++.+.+++    +|...+ +...+  ... +.. ..+.
T Consensus       113 ~l~~~~g~~VLDlg~G~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D--~~~-~~~-~~~~  187 (315)
T 1ixk_A          113 ALDPKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSS--SLH-IGE-LNVE  187 (315)
T ss_dssp             HHCCCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSC--GGG-GGG-GCCC
T ss_pred             HhCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECC--hhh-ccc-cccc
Confidence            44678899999888765 666777887653 2389999999998887654    465332 21222  111 111 2347


Q ss_pred             ccEEE-E--ccCC-------------------------hHHHHHHHHHhccCCceEEEecc
Q 016660          270 ADYCF-E--CVGL-------------------------ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       270 ~d~vi-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ||.|+ |  |+|.                         ...++.+.+.|+++ |++++...
T Consensus       188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpG-G~lv~stc  247 (315)
T 1ixk_A          188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG-GILVYSTC  247 (315)
T ss_dssp             EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEEeC
Confidence            99886 4  3332                         24567899999997 99887543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=95.38  E-value=0.1  Score=46.80  Aligned_cols=97  Identities=13%  Similarity=0.103  Sum_probs=66.5

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC---eEEeCCCCCchhHHHHhhCCCc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      .+.++.+||-+|+|. |..+..+++..|. +|++++.++..++.+++    .|..   .++..+- ...    .+.++.|
T Consensus        79 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~----~~~~~~f  151 (297)
T 2o57_A           79 VLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF-LEI----PCEDNSY  151 (297)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT-TSC----SSCTTCE
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc-ccC----CCCCCCE
Confidence            678899999999874 7788888887788 99999999988776654    3331   2222111 000    1122379


Q ss_pred             cEEEEccCC------hHHHHHHHHHhccCCceEEEecc
Q 016660          271 DYCFECVGL------ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       271 d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      |+|+....-      ...++++.+.|+++ |++++...
T Consensus       152 D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  188 (297)
T 2o57_A          152 DFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP  188 (297)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             eEEEecchhhhcCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence            999864332      34578999999997 99887643

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=95.38  E-value=0.044  Score=47.96  Aligned_cols=74  Identities=18%  Similarity=0.268  Sum_probs=47.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe-EEeCCCCCchhH-HHHhh--CCCccEEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSI-IIDMT--DGGADYCFE  275 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vv~~~~~~~~~~-i~~~~--~g~~d~vid  275 (385)
                      ++.++||.|+ |++|...++.+...|+ +|++++++++.    ++.++.. ..|..+...... +....  -+++|++|+
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~   80 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ----EQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVN   80 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS----SCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh----hcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4678999987 9999999999999999 89988887653    2234221 123333111111 22111  247999999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      ++|.
T Consensus        81 ~Ag~   84 (250)
T 2fwm_X           81 AAGI   84 (250)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9874

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.05  Score=47.76  Aligned_cols=77  Identities=16%  Similarity=0.203  Sum_probs=47.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHH-HcCCCeE---EeCCCCCchhH-HHHhh--CCCcc
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGK-RFGVTEF---VNSKNCGDKSI-IIDMT--DGGAD  271 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~-~lg~~~v---v~~~~~~~~~~-i~~~~--~g~~d  271 (385)
                      +.++||+|+ +++|...++.+...  |+ +|+.+++++++.+.+. +++....   .|..+...... +.+..  -+++|
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   80 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKID   80 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCcc
Confidence            568999987 99999888766655  46 8888888887766543 3443322   23333111111 21111  13799


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++|+++|.
T Consensus        81 ~lvnnAg~   88 (254)
T 3kzv_A           81 SLVANAGV   88 (254)
T ss_dssp             EEEEECCC
T ss_pred             EEEECCcc
Confidence            99999885

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.34  E-value=0.044  Score=47.09  Aligned_cols=99  Identities=19%  Similarity=0.294  Sum_probs=65.8

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCC-CeEEeCCCCCchhHHHHhhCCCc
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~-~~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      ...++++.+||=+|+|..|..++.+++..+. +|++++.+++..+.+++    .+. -.++..+-...    ..+.++.|
T Consensus        50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~----~~~~~~~f  124 (230)
T 3evz_A           50 KTFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGII----KGVVEGTF  124 (230)
T ss_dssp             HTTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSS----TTTCCSCE
T ss_pred             HhhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhh----hhcccCce
Confidence            3446789999999988568888888887666 99999999988877664    343 22332221001    11223479


Q ss_pred             cEEEEccCC-------------------------hHHHHHHHHHhccCCceEEEe
Q 016660          271 DYCFECVGL-------------------------ASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       271 d~vid~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      |+|+-.-.-                         ...++.+.+.|+++ |+++++
T Consensus       125 D~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~  178 (230)
T 3evz_A          125 DVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG-GKVALY  178 (230)
T ss_dssp             EEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE-EEEEEE
T ss_pred             eEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC-eEEEEE
Confidence            999843110                         34477888889997 988875

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.34  E-value=0.099  Score=46.84  Aligned_cols=75  Identities=16%  Similarity=0.241  Sum_probs=51.5

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHc----CCC-eEEeCCCCCchhHHHHhhCCCccE
Q 016660          200 EVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF----GVT-EFVNSKNCGDKSIIIDMTDGGADY  272 (385)
Q Consensus       200 ~~~~~VlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l----g~~-~vv~~~~~~~~~~i~~~~~g~~d~  272 (385)
                      .++.++||+| +|++|.+++..+...|+ +|++++++.++.+.+ +++    ++. ...|..+   ...+.+... .+|+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~---~~~~~~~~~-~~Dv  191 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD---DASRAEAVK-GAHF  191 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS---HHHHHHHTT-TCSE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCC---HHHHHHHHH-hCCE
Confidence            3678999999 59999999999999999 699998887776533 222    322 2234333   222333332 4899


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +|+++|.
T Consensus       192 lVn~ag~  198 (287)
T 1lu9_A          192 VFTAGAI  198 (287)
T ss_dssp             EEECCCT
T ss_pred             EEECCCc
Confidence            9999974

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.32  E-value=0.046  Score=48.63  Aligned_cols=94  Identities=19%  Similarity=0.266  Sum_probs=62.3

Q ss_pred             ccccchhhhhhhhhhhccC-CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCc
Q 016660          181 LLSCGVSTGVGAAWRTANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  258 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~~-~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~  258 (385)
                      .+||........+ +..++ -.|.+++|+|. +.+|..+++++...|+ +|+++.+....                    
T Consensus       140 ~~PcTp~gv~~lL-~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~T~~--------------------  197 (286)
T 4a5o_A          140 LRPCTPKGIMTLL-ASTGADLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRFTRD--------------------  197 (286)
T ss_dssp             SCCHHHHHHHHHH-HHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTTCSC--------------------
T ss_pred             CCCCCHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCCcC--------------------
Confidence            3555444344323 33333 47999999997 5589999999999999 88888643211                    


Q ss_pred             hhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          259 KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       259 ~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                         +.+.+. .+|+||.++|.+..+.  .+.++++ ..++.+|..
T Consensus       198 ---L~~~~~-~ADIVI~Avg~p~~I~--~~~vk~G-avVIDvgi~  235 (286)
T 4a5o_A          198 ---LADHVS-RADLVVVAAGKPGLVK--GEWIKEG-AIVIDVGIN  235 (286)
T ss_dssp             ---HHHHHH-TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCSC
T ss_pred             ---HHHHhc-cCCEEEECCCCCCCCC--HHHcCCC-eEEEEeccc
Confidence               111111 4899999999876443  3567886 778888864

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.32  E-value=0.12  Score=46.46  Aligned_cols=92  Identities=14%  Similarity=0.157  Sum_probs=57.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC-----chHHHHHHH---cCCCeEEeCCCCCchhHHHHhhCCCccEE
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-----SEKFEIGKR---FGVTEFVNSKNCGDKSIIIDMTDGGADYC  273 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~-----~~~~~~~~~---lg~~~vv~~~~~~~~~~i~~~~~g~~d~v  273 (385)
                      .+|||+|+ |.+|...++.+...|+ +|++++++     +++.+.++.   .++. ++. -+......+.+... ++|+|
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~~-~~~-~D~~d~~~l~~~~~-~~d~v   80 (313)
T 1qyd_A            5 SRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQMLLYFKQLGAK-LIE-ASLDDHQRLVDALK-QVDVV   80 (313)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHHHHHHHHTTTCE-EEC-CCSSCHHHHHHHHT-TCSEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCcccchhHHHHHHHHHhCCeE-EEe-CCCCCHHHHHHHHh-CCCEE
Confidence            56999997 9999999999988898 78888887     344444332   3443 221 12122333444444 59999


Q ss_pred             EEccCCh------HHHHHHHHHhccC--CceEE
Q 016660          274 FECVGLA------SLVQEAYACCRKG--WGKTI  298 (385)
Q Consensus       274 id~~g~~------~~~~~~~~~l~~~--~G~~v  298 (385)
                      |++++..      .....+++.++..  -.+++
T Consensus        81 i~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           81 ISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             EECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             EECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            9998753      1233455555443  13666

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=95.32  E-value=0.056  Score=51.12  Aligned_cols=82  Identities=18%  Similarity=0.169  Sum_probs=51.2

Q ss_pred             ccC-CCCCEEEEEcC-CHHHHHHHHHHHH-cCCCEEEEEcCCchH----------------HHHHHHcCCCeE-E--eCC
Q 016660          197 ANV-EVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEK----------------FEIGKRFGVTEF-V--NSK  254 (385)
Q Consensus       197 ~~~-~~~~~VlI~G~-g~vG~~ai~la~~-~G~~~vi~~~~~~~~----------------~~~~~~lg~~~v-v--~~~  254 (385)
                      ..+ +.+.++||+|+ +++|.+.+..+.. .|+ +|++++++.+.                .+.+++.|.... +  |..
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvt  133 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAF  133 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCC
Confidence            344 45788899987 9999998777777 999 88888765432                134556675432 2  322


Q ss_pred             CCCchhH----HHHhhCCCccEEEEccCC
Q 016660          255 NCGDKSI----IIDMTDGGADYCFECVGL  279 (385)
Q Consensus       255 ~~~~~~~----i~~~~~g~~d~vid~~g~  279 (385)
                      +......    +.+..+|++|++++++|.
T Consensus       134 d~~~v~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          134 SDAARAQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             SHHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence            2111111    222222679999998875

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=95.30  E-value=0.064  Score=47.13  Aligned_cols=41  Identities=15%  Similarity=0.049  Sum_probs=33.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH---cCCCEEEEEcCCchHHHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARL---CGATRIIGVDVISEKFEIG  242 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~---~G~~~vi~~~~~~~~~~~~  242 (385)
                      ++.++||.|+ |++|...++.+..   .|+ +|+++++++++.+.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~   49 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHH
Confidence            4567899987 9999998887776   899 899999888766543

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.30  E-value=0.037  Score=49.02  Aligned_cols=93  Identities=12%  Similarity=0.086  Sum_probs=61.9

Q ss_pred             ccccchhhhhhhhhhhccCCCCCEEEEEcCC-HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCch
Q 016660          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK  259 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g-~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~  259 (385)
                      .+||........+ +..+ -.|.+++|+|.| .+|..+++++...|+ +|+++.+..+.                   ..
T Consensus       131 ~~PcTp~gv~~lL-~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~t~~-------------------L~  188 (276)
T 3ngx_A          131 LVPATPRAVIDIM-DYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSKTKD-------------------IG  188 (276)
T ss_dssp             SCCHHHHHHHHHH-HHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSC-------------------HH
T ss_pred             CCCCcHHHHHHHH-HHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCCccc-------------------HH
Confidence            3455444444433 3334 789999999985 689999999999999 88888643211                   11


Q ss_pred             hHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          260 SIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       260 ~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +.++     .+|+||.++|.+..+..  +.++++ ..++.+|..
T Consensus       189 ~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~  224 (276)
T 3ngx_A          189 SMTR-----SSKIVVVAVGRPGFLNR--EMVTPG-SVVIDVGIN  224 (276)
T ss_dssp             HHHH-----HSSEEEECSSCTTCBCG--GGCCTT-CEEEECCCE
T ss_pred             Hhhc-----cCCEEEECCCCCccccH--hhccCC-cEEEEeccC
Confidence            1111     37999999998764432  456785 777788754

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=95.29  E-value=0.064  Score=46.34  Aligned_cols=102  Identities=16%  Similarity=0.229  Sum_probs=66.3

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eE-EeCCCCCchhHHHHhhCCCc
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EF-VNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~v-v~~~~~~~~~~i~~~~~g~~  270 (385)
                      +.......++.+||-+|+|. |..+..+++. |..+|++++.+++..+.+++.... .+ +...+  ...  ..+..+.|
T Consensus        35 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d--~~~--~~~~~~~f  108 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERAD--LDK--LHLPQDSF  108 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECC--GGG--CCCCTTCE
T ss_pred             HHHhccccCCCEEEEEcCcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcC--hhh--ccCCCCCc
Confidence            33445556889999999865 6667777765 655899999999998888875432 11 11111  111  01123379


Q ss_pred             cEEEEccCC------hHHHHHHHHHhccCCceEEEec
Q 016660          271 DYCFECVGL------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       271 d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      |+|+....-      ...++.+.+.|+++ |++++.-
T Consensus       109 D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~  144 (243)
T 3bkw_A          109 DLAYSSLALHYVEDVARLFRTVHQALSPG-GHFVFST  144 (243)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             eEEEEeccccccchHHHHHHHHHHhcCcC-cEEEEEe
Confidence            999865331      34578889999997 9988653

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.29  E-value=0.018  Score=51.07  Aligned_cols=71  Identities=17%  Similarity=0.161  Sum_probs=48.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      +.+|||+|+ |.+|...++.+...|+ +|+++++++.+.+     +....+-.-+......+.++.. ++|+||+++|.
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~-~~D~vi~~Ag~   74 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPLDPA-----GPNEECVQCDLADANAVNAMVA-GCDGIVHLGGI   74 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSCCCCC-----CTTEEEEECCTTCHHHHHHHHT-TCSEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCCcccc-----CCCCEEEEcCCCCHHHHHHHHc-CCCEEEECCCC
Confidence            357999997 9999999999888898 8999988876543     2221111222223333555544 69999999874

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=95.29  E-value=0.026  Score=52.00  Aligned_cols=98  Identities=17%  Similarity=0.227  Sum_probs=63.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc------CC--CeE-EeCCCCCchhHHHHhhCCC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF------GV--TEF-VNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l------g~--~~v-v~~~~~~~~~~i~~~~~g~  269 (385)
                      ...+.+||.+|+|. |..+..+++..+..+|++++.+++-.+.+++.      |.  ..+ +-..+  ....+.....+.
T Consensus       118 ~~~~~~VLdIG~G~-G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D--~~~~l~~~~~~~  194 (334)
T 1xj5_A          118 IPNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGD--GVAFLKNAAEGS  194 (334)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESC--HHHHHHTSCTTC
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECC--HHHHHHhccCCC
Confidence            35668999998764 66777888776545999999999988887753      11  111 11111  111122222347


Q ss_pred             ccEEEEccC----------ChHHHHHHHHHhccCCceEEEe
Q 016660          270 ADYCFECVG----------LASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       270 ~d~vid~~g----------~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      ||+|+--..          ....++.+.+.|+++ |.++.-
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~  234 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQ  234 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence            999984222          245688999999997 999875

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=95.29  E-value=0.064  Score=49.65  Aligned_cols=127  Identities=15%  Similarity=0.068  Sum_probs=76.5

Q ss_pred             CEEEEEcCCHHHHH-HHHHHHHc-CCCEEE-EEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccC
Q 016660          203 STVVIFGLGSIGLA-VAEGARLC-GATRII-GVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG  278 (385)
Q Consensus       203 ~~VlI~G~g~vG~~-ai~la~~~-G~~~vi-~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g  278 (385)
                      -+|.|+|.|.+|.. .+..++.. ++ .++ +.++++++.+  ++++...++  .+      ..++... .+|+|+.|++
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~-~l~av~d~~~~~~~--~~~~~~~~~--~~------~~~ll~~~~vD~V~i~tp   76 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGL-ELAGVSSSDASKVH--ADWPAIPVV--SD------PQMLFNDPSIDLIVIPTP   76 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTE-EEEEEECSCHHHHH--TTCSSCCEE--SC------HHHHHHCSSCCEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCc-EEEEEECCCHHHHH--hhCCCCceE--CC------HHHHhcCCCCCEEEEeCC
Confidence            46899999999985 66666654 77 555 5566665554  334322232  12      3344434 7999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCCCCCcccccHH------HHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF------EVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~------~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      .....+.+..++..  |+-|++...     +..+..      ... .++..+.-.  ....+...+..+.+++++|.+
T Consensus        77 ~~~H~~~~~~al~a--GkhV~~EKP-----la~~~~e~~~l~~~a~~~g~~~~v~--~~~r~~p~~~~~~~~i~~g~i  145 (352)
T 3kux_A           77 NDTHFPLAQSALAA--GKHVVVDKP-----FTVTLSQANALKEHADDAGLLLSVF--HNRRWDSDFLTLKTLLAEGSL  145 (352)
T ss_dssp             TTTHHHHHHHHHHT--TCEEEECSS-----CCSCHHHHHHHHHHHHHTTCCEEEC--CGGGGCHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHC--CCcEEEECC-----CcCCHHHHHHHHHHHHHcCCeEEEE--eecccCHHHHHHHHHHhcCCC
Confidence            88778888889888  566666432     222221      112 234444332  122233567788888888755

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.28  E-value=0.038  Score=48.48  Aligned_cols=80  Identities=19%  Similarity=0.166  Sum_probs=46.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc-CCchHH----HHHHHcCCCe-EE--eCCCCCchhH-HHHhh--
Q 016660          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKF----EIGKRFGVTE-FV--NSKNCGDKSI-IIDMT--  266 (385)
Q Consensus       199 ~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~-~~~~~~----~~~~~lg~~~-vv--~~~~~~~~~~-i~~~~--  266 (385)
                      ..++.+|||+|+ |++|...++.+...|+ +|++++ ++.++.    +.+++.+... ++  |..+...... +....  
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE   88 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            456788999987 9999999999888999 777765 444332    2233445432 22  2322111111 22211  


Q ss_pred             CCCccEEEEccCC
Q 016660          267 DGGADYCFECVGL  279 (385)
Q Consensus       267 ~g~~d~vid~~g~  279 (385)
                      -+++|++|+++|.
T Consensus        89 ~g~id~lv~~Ag~  101 (256)
T 3ezl_A           89 VGEIDVLVNNAGI  101 (256)
T ss_dssp             TCCEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2369999999884

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.28  E-value=0.076  Score=46.76  Aligned_cols=78  Identities=18%  Similarity=0.294  Sum_probs=47.9

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCCch---HHHHH-HHcCCCeEE--eCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIG-KRFGVTEFV--NSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~~---~~~~~-~~lg~~~vv--~~~~~~~~~~-i~~~~--~g  268 (385)
                      .+.++||.|+   |++|...++.+...|+ +|++++++++   ..+.+ .+.+...++  |..+...... +....  -+
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4678999985   6999999988888899 8999888775   22222 223432222  3333111111 11111  13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        86 ~iD~lv~~Ag~   96 (261)
T 2wyu_A           86 GLDYLVHAIAF   96 (261)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999874

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.27  E-value=0.03  Score=51.45  Aligned_cols=89  Identities=20%  Similarity=0.237  Sum_probs=61.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .+.+|.|+|.|.+|...++.++..|. +|++.+++.++.+.+.++|+..+    +  ..+.+ .    ..|+|+.+++..
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~--l~e~l-~----~aDvVi~~vp~~  221 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQAEFV----S--TPELA-A----QSDFIVVACSLT  221 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTCEEC----C--HHHHH-H----HCSEEEECCCCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCceeC----C--HHHHH-h----hCCEEEEeCCCC
Confidence            47789999999999999999999999 79999887766666666664321    1  11111 1    378999888753


Q ss_pred             H----HH-HHHHHHhccCCceEEEecc
Q 016660          281 S----LV-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       281 ~----~~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      .    .+ ......++++ ..++.++.
T Consensus       222 ~~t~~~i~~~~~~~mk~g-ailIn~sr  247 (330)
T 2gcg_A          222 PATEGLCNKDFFQKMKET-AVFINISR  247 (330)
T ss_dssp             TTTTTCBSHHHHHHSCTT-CEEEECSC
T ss_pred             hHHHHhhCHHHHhcCCCC-cEEEECCC
Confidence            2    12 3566778885 66666653

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=95.26  E-value=0.075  Score=49.32  Aligned_cols=126  Identities=17%  Similarity=0.214  Sum_probs=76.2

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHc-CCCEEEE-EcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          204 TVVIFGLGSIGLA-VAEGARLC-GATRIIG-VDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~g~vG~~-ai~la~~~-G~~~vi~-~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      +|.|+|.|.+|.. .+..++.. ++ .+++ .++++++  ..++++...+++  +      ..++... .+|+|+.|++.
T Consensus         7 rvgiiG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~--~~~~~~~~~~~~--~------~~~ll~~~~vD~V~i~tp~   75 (358)
T 3gdo_A            7 KVGILGYGLSGSVFHGPLLDVLDEY-QISKIMTSRTEE--VKRDFPDAEVVH--E------LEEITNDPAIELVIVTTPS   75 (358)
T ss_dssp             EEEEECCSHHHHHTTHHHHTTCTTE-EEEEEECSCHHH--HHHHCTTSEEES--S------THHHHTCTTCCEEEECSCT
T ss_pred             eEEEEccCHHHHHHHHHHHhhCCCe-EEEEEEcCCHHH--HHhhCCCCceEC--C------HHHHhcCCCCCEEEEcCCc
Confidence            6899999999984 66666544 77 5554 4555544  455665444432  2      2333343 79999999999


Q ss_pred             hHHHHHHHHHhccCCceEEEeccCCCCCcccccHH------HHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          280 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF------EVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~------~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      ....+.+..++..  |+-|++...     +..+..      ... .++..+.-.  ....+...+..+.+++++|.+
T Consensus        76 ~~H~~~~~~al~a--GkhVl~EKP-----la~~~~e~~~l~~~a~~~g~~~~v~--~~~r~~p~~~~~k~~i~~g~i  143 (358)
T 3gdo_A           76 GLHYEHTMACIQA--GKHVVMEKP-----MTATAEEGETLKRAADEKGVLLSVY--HNRRWDNDFLTIKKLISEGSL  143 (358)
T ss_dssp             TTHHHHHHHHHHT--TCEEEEESS-----CCSSHHHHHHHHHHHHHHTCCEEEE--CGGGGSHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHc--CCeEEEecC-----CcCCHHHHHHHHHHHHHcCCeEEEe--eecccCHHHHHHHHHHhcCCC
Confidence            8878888889888  566666432     222221      111 234444322  122233567788888888865

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=95.26  E-value=0.063  Score=51.36  Aligned_cols=135  Identities=11%  Similarity=-0.082  Sum_probs=80.8

Q ss_pred             CEEEEEcC----CHHHHHHHHHHHHc--CCCEEEEEcCCchHHH-HHHHcCCC--eEEeCCCCCchhHHHHhhCC-CccE
Q 016660          203 STVVIFGL----GSIGLAVAEGARLC--GATRIIGVDVISEKFE-IGKRFGVT--EFVNSKNCGDKSIIIDMTDG-GADY  272 (385)
Q Consensus       203 ~~VlI~G~----g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~-~~~~lg~~--~vv~~~~~~~~~~i~~~~~g-~~d~  272 (385)
                      -+|.|+|+    |.+|...+..++..  +++-|.++++++++.+ +++++|+.  .++  .+      +.++... .+|+
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~--~~------~~~ll~~~~vD~   92 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAF--PT------LESFASSSTIDM   92 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEE--SS------HHHHHHCSSCSE
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceee--CC------HHHHhcCCCCCE
Confidence            36899998    88888777777765  6733456666776654 45567765  232  22      3344433 7999


Q ss_pred             EEEccCChHHHHHHHHHhccCCc------eEEEeccCCCCCcc-cccHHHHhh-cCcEEEEeeecCCCCCCcHHHHHHHH
Q 016660          273 CFECVGLASLVQEAYACCRKGWG------KTIVLGVDQPGSQL-SLSSFEVLH-SGKILMGSLFGGLKAKSDIPILLKRY  344 (385)
Q Consensus       273 vid~~g~~~~~~~~~~~l~~~~G------~~v~~g~~~~~~~~-~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~  344 (385)
                      |+.|+......+.+..++..  |      +-|++......... ...+..... ++..+.-.  ....+...+..+.+++
T Consensus        93 V~i~tp~~~H~~~~~~al~a--G~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~--~~~R~~p~~~~~k~~i  168 (438)
T 3btv_A           93 IVIAIQVASHYEVVMPLLEF--SKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTIIS--LQGRKSPYILRAKELI  168 (438)
T ss_dssp             EEECSCHHHHHHHHHHHHHH--GGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEEEE--CGGGGCHHHHHHHHHH
T ss_pred             EEEeCCcHHHHHHHHHHHHC--CCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEEEe--cccccCHHHHHHHHHH
Confidence            99999988778888888887  5      66777532111100 011112222 34443322  2233335677888889


Q ss_pred             HcCCC
Q 016660          345 MDKEL  349 (385)
Q Consensus       345 ~~g~~  349 (385)
                      ++|.+
T Consensus       169 ~~G~i  173 (438)
T 3btv_A          169 SQGYI  173 (438)
T ss_dssp             HTTTT
T ss_pred             HcCCC
Confidence            88865

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=95.26  E-value=0.037  Score=49.00  Aligned_cols=101  Identities=17%  Similarity=0.228  Sum_probs=68.3

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc----CCC---eEEeCCCCCchhHHHHh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT---EFVNSKNCGDKSIIIDM  265 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~---~vv~~~~~~~~~~i~~~  265 (385)
                      +.....+.++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++.    |..   .++..+-...     .+
T Consensus        53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~  125 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-----PF  125 (273)
T ss_dssp             HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CS
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-----CC
Confidence            44556778999999999876 7788888887787 999999999887776642    421   2222111000     11


Q ss_pred             hCCCccEEEEccC------ChHHHHHHHHHhccCCceEEEec
Q 016660          266 TDGGADYCFECVG------LASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       266 ~~g~~d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .++.||+|+..-.      ....++.+.+.|+++ |++++..
T Consensus       126 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~  166 (273)
T 3bus_A          126 EDASFDAVWALESLHHMPDRGRALREMARVLRPG-GTVAIAD  166 (273)
T ss_dssp             CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred             CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC-eEEEEEE
Confidence            2237999985321      234578899999997 9987654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.25  E-value=0.069  Score=46.19  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=59.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      .+.+|||+|+ |.+|...++.+...|+. +|+++++++++.+....-++..+ .|..+   ...+.+... ++|+||+++
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d---~~~~~~~~~-~~d~vi~~a   92 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK---LDDYASAFQ-GHDVGFCCL   92 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG---GGGGGGGGS-SCSEEEECC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCC---HHHHHHHhc-CCCEEEECC
Confidence            3578999997 99999999988888872 68888777654332211122211 22222   122333333 699999999


Q ss_pred             CChH--------------HHHHHHHHhcc-CCceEEEeccCC
Q 016660          278 GLAS--------------LVQEAYACCRK-GWGKTIVLGVDQ  304 (385)
Q Consensus       278 g~~~--------------~~~~~~~~l~~-~~G~~v~~g~~~  304 (385)
                      |...              ....+++.+.+ +.++++.++...
T Consensus        93 g~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~  134 (242)
T 2bka_A           93 GTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG  134 (242)
T ss_dssp             CCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCc
Confidence            8642              11233334433 225888887643

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=95.24  E-value=0.12  Score=49.20  Aligned_cols=103  Identities=9%  Similarity=0.126  Sum_probs=67.7

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-eEEeCCCCCchhHHHHhhCCC
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~vv~~~~~~~~~~i~~~~~g~  269 (385)
                      .....+++++||=.|+|+ |..+.++++..+-.+|++++.++.+.+.+++    +|.. .++..+.....   ..+.++.
T Consensus       240 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~---~~~~~~~  315 (429)
T 1sqg_A          240 TWLAPQNGEHILDLCAAP-GGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS---QWCGEQQ  315 (429)
T ss_dssp             HHHCCCTTCEEEEESCTT-CHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTH---HHHTTCC
T ss_pred             HHcCCCCcCeEEEECCCc-hHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhch---hhcccCC
Confidence            344678899999998876 6677788887642389999999998887654    4543 33322221111   1122347


Q ss_pred             ccEEEE---ccCCh-------------------------HHHHHHHHHhccCCceEEEecc
Q 016660          270 ADYCFE---CVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       270 ~d~vid---~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ||.|+-   |+|..                         ..+..+++.++++ |++++...
T Consensus       316 fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpG-G~lvystc  375 (429)
T 1sqg_A          316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVYATC  375 (429)
T ss_dssp             EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEEEES
T ss_pred             CCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEEC
Confidence            999974   44422                         4467788899997 99887643

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=95.23  E-value=0.053  Score=48.99  Aligned_cols=96  Identities=17%  Similarity=0.138  Sum_probs=61.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC--------CC--eEEeCCCCCchhHHHHhhCCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--------VT--EFVNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg--------~~--~vv~~~~~~~~~~i~~~~~g~  269 (385)
                      ..+.+||++|+|. |..+..+++..+..+|++++.+++..+.+++.-        ..  .++. .+  ... ......+.
T Consensus        89 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~-~D--~~~-~l~~~~~~  163 (296)
T 1inl_A           89 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI-AN--GAE-YVRKFKNE  163 (296)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-SC--HHH-HGGGCSSC
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEE-Cc--HHH-HHhhCCCC
Confidence            3568999998765 666777787766569999999999888776521        11  1221 11  111 11112347


Q ss_pred             ccEEEE-ccCC----------hHHHHHHHHHhccCCceEEEec
Q 016660          270 ADYCFE-CVGL----------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       270 ~d~vid-~~g~----------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ||+|+- ....          ...++.+.+.|+++ |.++...
T Consensus       164 fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  205 (296)
T 1inl_A          164 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAET  205 (296)
T ss_dssp             EEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             ceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            999973 3211          35578899999997 9988764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.22  E-value=0.045  Score=49.81  Aligned_cols=88  Identities=16%  Similarity=0.274  Sum_probs=60.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASL  282 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~  282 (385)
                      .+|.|+|+|.+|...+..+...|. .|++.++++++.+.+.+.|.. +  ..+  ..+.+ .    ..|+||.|+..+..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~--~~~--~~~~~-~----~~DvVi~av~~~~~   99 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGAR-L--GRT--PAEVV-S----TCDITFACVSDPKA   99 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTCE-E--CSC--HHHHH-H----HCSEEEECCSSHHH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCCE-E--cCC--HHHHH-h----cCCEEEEeCCCHHH
Confidence            469999999999998888888898 799999999888877777753 1  111  11111 1    37999999997655


Q ss_pred             HHHHHH-------HhccCCceEEEecc
Q 016660          283 VQEAYA-------CCRKGWGKTIVLGV  302 (385)
Q Consensus       283 ~~~~~~-------~l~~~~G~~v~~g~  302 (385)
                      +...+.       .+.++ ..++.++.
T Consensus       100 ~~~v~~~~~~~~~~l~~~-~~vv~~s~  125 (316)
T 2uyy_A          100 AKDLVLGPSGVLQGIRPG-KCYVDMST  125 (316)
T ss_dssp             HHHHHHSTTCGGGGCCTT-CEEEECSC
T ss_pred             HHHHHcCchhHhhcCCCC-CEEEECCC
Confidence            665553       34454 55555553

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.21  E-value=0.046  Score=49.99  Aligned_cols=71  Identities=15%  Similarity=0.147  Sum_probs=47.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      +|||+|+ |.+|...++.+...|+ +|+++++++++.+.+...++..+ .|..   ....+.+... ++|+||++++.
T Consensus        15 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~Dl~---d~~~~~~~~~-~~d~vih~a~~   87 (342)
T 2x4g_A           15 KYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRLAYLEPECRVAEML---DHAGLERALR-GLDGVIFSAGY   87 (342)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGGGGGCCEEEECCTT---CHHHHHHHTT-TCSEEEEC---
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhhccCCeEEEEecCC---CHHHHHHHHc-CCCEEEECCcc
Confidence            7999997 9999999999988998 89999887765443333344322 1222   2233444443 59999999874

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.20  E-value=0.092  Score=49.00  Aligned_cols=130  Identities=14%  Similarity=0.107  Sum_probs=82.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc--------CCCEEEEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEE
Q 016660          204 TVVIFGLGSIGLAVAEGARLC--------GATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYC  273 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~--------G~~~vi~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~v  273 (385)
                      +|-|+|+|.+|...+..++..        +++-+.++++++++.+ .++++|...++.  +      ..++... .+|+|
T Consensus         8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~--d------~~~ll~~~~iDaV   79 (390)
T 4h3v_A            8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTET--D------WRTLLERDDVQLV   79 (390)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEES--C------HHHHTTCTTCSEE
T ss_pred             cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccC--C------HHHHhcCCCCCEE
Confidence            588999999998766655533        2333445566776655 566788776542  2      3455544 79999


Q ss_pred             EEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHH---HH---hh----cCcEEEEeeecCCCCCCcHHHHHHH
Q 016660          274 FECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF---EV---LH----SGKILMGSLFGGLKAKSDIPILLKR  343 (385)
Q Consensus       274 id~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~---~~---~~----~~~~i~g~~~~~~~~~~~~~~~~~~  343 (385)
                      +-|+......+.+..++..  |+-|++-..     +..+..   .+   ..    ++..+.-..  .+.+...+..+.++
T Consensus        80 ~I~tP~~~H~~~~~~al~a--GkhVl~EKP-----la~t~~ea~~l~~~~~~~~~~g~~~~v~~--~~R~~p~~~~~k~~  150 (390)
T 4h3v_A           80 DVCTPGDSHAEIAIAALEA--GKHVLCEKP-----LANTVAEAEAMAAAAAKAAAGGIRSMVGF--TYRRVPAIALARKL  150 (390)
T ss_dssp             EECSCGGGHHHHHHHHHHT--TCEEEEESS-----SCSSHHHHHHHHHHHHHHHHTTCCEEEEC--GGGGSHHHHHHHHH
T ss_pred             EEeCChHHHHHHHHHHHHc--CCCceeecC-----cccchhHHHHHHHHHHHHHhcCCceEEEe--eeccCchHHHHHHH
Confidence            9999988878899999998  577777543     222221   11   11    234333221  22233568888899


Q ss_pred             HHcCCCC
Q 016660          344 YMDKELE  350 (385)
Q Consensus       344 ~~~g~~~  350 (385)
                      +++|.+-
T Consensus       151 i~~g~iG  157 (390)
T 4h3v_A          151 VADGKIG  157 (390)
T ss_dssp             HHTTSSC
T ss_pred             HHcCCCC
Confidence            9998653

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=95.20  E-value=0.028  Score=52.09  Aligned_cols=88  Identities=18%  Similarity=0.182  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++. +.+.+.+.|+..+   .+  ..+ +..    ..|+|+-+++..
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~~~---~~--l~e-ll~----~aDiV~l~~Plt  226 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFAVA---ES--KDA-LFE----QSDVLSVHLRLN  226 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCEEC---SS--HHH-HHH----HCSEEEECCCCS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCceEe---CC--HHH-HHh----hCCEEEEeccCc
Confidence            57899999999999999999999999 899998764 3455566776421   11  111 111    368888777633


Q ss_pred             H-H----HHHHHHHhccCCceEEEec
Q 016660          281 S-L----VQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       281 ~-~----~~~~~~~l~~~~G~~v~~g  301 (385)
                      . +    -...+..|+++ ..++.++
T Consensus       227 ~~t~~li~~~~l~~mk~g-ailIN~a  251 (352)
T 3gg9_A          227 DETRSIITVADLTRMKPT-ALFVNTS  251 (352)
T ss_dssp             TTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred             HHHHHhhCHHHHhhCCCC-cEEEECC
Confidence            1 1    13567778886 7777776

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=95.20  E-value=0.049  Score=49.67  Aligned_cols=98  Identities=12%  Similarity=0.068  Sum_probs=62.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC--------CeEEeCCCCCchhHHHHhhCCCcc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--------TEFVNSKNCGDKSIIIDMTDGGAD  271 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--------~~vv~~~~~~~~~~i~~~~~g~~d  271 (385)
                      ..+.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-.        .++ .....+....+. ...+.||
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv-~~~~~D~~~~l~-~~~~~fD  183 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL-DLFCGDGFEFLK-NHKNEFD  183 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTE-EEECSCHHHHHH-HCTTCEE
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCE-EEEEChHHHHHH-hcCCCce
Confidence            4567999998765 6677778876654599999999998888876321        111 111111111122 2334799


Q ss_pred             EEEEccCC----------hHHHHHHHHHhccCCceEEEec
Q 016660          272 YCFECVGL----------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       272 ~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +||--...          ...++.+.+.|+++ |.++.-.
T Consensus       184 ~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg-G~lv~~~  222 (314)
T 2b2c_A          184 VIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQG  222 (314)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEE-EEEEEEC
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHhhcCCC-eEEEEEC
Confidence            99843311          35578899999997 9988764

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.19  E-value=0.045  Score=49.53  Aligned_cols=67  Identities=16%  Similarity=0.207  Sum_probs=38.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      +.+|||+|+ |.+|...++.+...|+ +|++++++.++.      + ....|..+...   +.+...+ ++|+||++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~------~-~~~~Dl~d~~~---~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW-HAVGCGFRRARP------K-FEQVNLLDSNA---VHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEC----------------------------CHHHHHHHCCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC-eEEEEccCCCCC------C-eEEecCCCHHH---HHHHHHhhCCCEEEECCcc
Confidence            467999997 9999999999988898 899998655431      1 11123222111   2233333 68999999874

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.19  E-value=0.031  Score=50.19  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=52.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLV  283 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~  283 (385)
                      +|.|+|.|.+|...++.+...|+ .|++.++++++.+.+.+.|+...   .+  ..+ +..    ..|+||-|+..+..+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~~--~~~-~~~----~advvi~~v~~~~~~   71 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGARQA---SS--PAE-VCA----ACDITIAMLADPAAA   71 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTCEEC---SC--HHH-HHH----HCSEEEECCSSHHHH
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec---CC--HHH-HHH----cCCEEEEEcCCHHHH
Confidence            58899999999998888888898 79999999999888877775321   11  111 111    368888888877445


Q ss_pred             HHHH
Q 016660          284 QEAY  287 (385)
Q Consensus       284 ~~~~  287 (385)
                      +..+
T Consensus        72 ~~v~   75 (287)
T 3pdu_A           72 REVC   75 (287)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=95.19  E-value=0.049  Score=48.33  Aligned_cols=76  Identities=20%  Similarity=0.274  Sum_probs=48.5

Q ss_pred             cCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE--EeCCCCCchhH-HHHhh--CCCcc
Q 016660          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF--VNSKNCGDKSI-IIDMT--DGGAD  271 (385)
Q Consensus       198 ~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v--v~~~~~~~~~~-i~~~~--~g~~d  271 (385)
                      ...++.+|||.|+ |++|...++.+...|+ +|+++++++++..     +....  .|..+...... +....  -+++|
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   83 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDV-----NVSDHFKIDVTNEEEVKEAVEKTTKKYGRID   83 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CT-----TSSEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhcc-----CceeEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            3457899999987 9999999999989999 8999988765431     11122  23333111111 22211  13799


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++|+++|.
T Consensus        84 ~lv~nAg~   91 (269)
T 3vtz_A           84 ILVNNAGI   91 (269)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999884

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=95.18  E-value=0.036  Score=50.67  Aligned_cols=90  Identities=17%  Similarity=0.137  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC-CchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      -.+.+|.|+|.|.+|...++.++.+|+ +|++.++ +.++ +.+.++|+.. .  .+  ..+ +..    ..|+|+-++.
T Consensus       144 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~-~--~~--l~e-ll~----~aDvVil~~p  211 (320)
T 1gdh_A          144 LDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQATF-H--DS--LDS-LLS----VSQFFSLNAP  211 (320)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCEE-C--SS--HHH-HHH----HCSEEEECCC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcEE-c--CC--HHH-HHh----hCCEEEEecc
Confidence            467899999999999999999999999 8999998 7766 3556677642 1  11  111 111    3789998887


Q ss_pred             ChH----HH-HHHHHHhccCCceEEEecc
Q 016660          279 LAS----LV-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       279 ~~~----~~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      ...    .+ ...+..++++ ..++.++.
T Consensus       212 ~~~~t~~~i~~~~l~~mk~g-ailIn~ar  239 (320)
T 1gdh_A          212 STPETRYFFNKATIKSLPQG-AIVVNTAR  239 (320)
T ss_dssp             CCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             CchHHHhhcCHHHHhhCCCC-cEEEECCC
Confidence            532    12 3466788886 77777764

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.18  E-value=0.044  Score=49.18  Aligned_cols=94  Identities=13%  Similarity=0.209  Sum_probs=62.5

Q ss_pred             ccccchhhhhhhhhhhcc-CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCc
Q 016660          181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  258 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~-~~~~~~VlI~G~g-~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~  258 (385)
                      .+||........+ +..+ --.+.+++|+|.| .+|.-+++++...|+ +|+++.+..+.                    
T Consensus       144 ~~PcTp~gi~~ll-~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~--------------------  201 (301)
T 1a4i_A          144 FIPCTPKGCLELI-KETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAH--------------------  201 (301)
T ss_dssp             CCCHHHHHHHHHH-HTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSS--------------------
T ss_pred             ccCchHHHHHHHH-HHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECCccc--------------------
Confidence            4565433333322 3333 3478999999997 589999999999999 88888533211                    


Q ss_pred             hhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          259 KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       259 ~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                         +.+.+. .+|+||-++|.+..+.  .+.++++ ..++.+|..
T Consensus       202 ---L~~~~~-~ADIVI~Avg~p~~I~--~~~vk~G-avVIDVgi~  239 (301)
T 1a4i_A          202 ---LDEEVN-KGDILVVATGQPEMVK--GEWIKPG-AIVIDCGIN  239 (301)
T ss_dssp             ---HHHHHT-TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCB
T ss_pred             ---HHHHhc-cCCEEEECCCCcccCC--HHHcCCC-cEEEEccCC
Confidence               222222 4899999999886433  2447786 788888864

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=95.17  E-value=0.065  Score=47.31  Aligned_cols=78  Identities=14%  Similarity=0.172  Sum_probs=48.3

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCCc---hHHHHHH-HcCCCeEE--eCCCCCchhH-HHHhhC--C
Q 016660          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS---EKFEIGK-RFGVTEFV--NSKNCGDKSI-IIDMTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~---~~~~~~~-~lg~~~vv--~~~~~~~~~~-i~~~~~--g  268 (385)
                      .+.++||.|+   |++|...++.+...|+ +|+++++++   +..+.+. +.+...++  |..+...... +.....  +
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4678999985   6999999999988999 898888876   2222222 23432333  3333111111 222222  3


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        87 ~iD~lv~~Ag~   97 (265)
T 1qsg_A           87 KFDGFVHSIGF   97 (265)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999999873

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=95.17  E-value=0.075  Score=48.15  Aligned_cols=99  Identities=17%  Similarity=0.093  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC--------CCeE-EeCCCCCchhHHHHhhCCCc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--------VTEF-VNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg--------~~~v-v~~~~~~~~~~i~~~~~g~~  270 (385)
                      .++.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-        ...+ +...+  ..........+.|
T Consensus        94 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D--~~~~~~~~~~~~f  170 (304)
T 3bwc_A           94 PKPERVLIIGGGD-GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGD--GLAFVRQTPDNTY  170 (304)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC--HHHHHHSSCTTCE
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECc--HHHHHHhccCCce
Confidence            5678999998765 667777787655559999999998888777532        1111 11111  1111111123479


Q ss_pred             cEEEEccCC----------hHHHHHHHHHhccCCceEEEecc
Q 016660          271 DYCFECVGL----------ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       271 d~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      |+|+-....          ...++.+.+.|+++ |.++....
T Consensus       171 DvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~~  211 (304)
T 3bwc_A          171 DVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD-GICCNQGE  211 (304)
T ss_dssp             EEEEEECC---------CCHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             eEEEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence            999743321          35578899999997 99887643

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.16  E-value=0.17  Score=45.18  Aligned_cols=41  Identities=20%  Similarity=0.444  Sum_probs=36.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  244 (385)
                      .+|.|+|+|.+|...++.+...|+ +|++.++++++.+.+.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~   45 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKK   45 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH
Confidence            579999999999999999999999 89999999988776654

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=95.16  E-value=0.095  Score=50.86  Aligned_cols=81  Identities=16%  Similarity=0.161  Sum_probs=51.7

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH-------HHHHHHcCCCeEEeCCCCCchhHHHHhh---C
Q 016660          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------FEIGKRFGVTEFVNSKNCGDKSIIIDMT---D  267 (385)
Q Consensus       199 ~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~-------~~~~~~lg~~~vv~~~~~~~~~~i~~~~---~  267 (385)
                      ++++.++||+|+ |++|...++.+...|+++|+.+.++...       .+.+++.|....+-.-+......+..+.   .
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~  302 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIG  302 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence            567899999987 9999998888888899778888887641       1234455654222112212222222221   1


Q ss_pred             --CCccEEEEccCC
Q 016660          268 --GGADYCFECVGL  279 (385)
Q Consensus       268 --g~~d~vid~~g~  279 (385)
                        +.+|+||++.|.
T Consensus       303 ~~g~ld~VIh~AG~  316 (486)
T 2fr1_A          303 DDVPLSAVFHAAAT  316 (486)
T ss_dssp             TTSCEEEEEECCCC
T ss_pred             hcCCCcEEEECCcc
Confidence              268999999984

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.16  E-value=0.074  Score=47.08  Aligned_cols=79  Identities=13%  Similarity=0.164  Sum_probs=47.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc-CCchHHHHH----HHcCCC-eE--EeCCCCCchhH-HHHhhC--
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEIG----KRFGVT-EF--VNSKNCGDKSI-IIDMTD--  267 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~-~~~~~~~~~----~~lg~~-~v--v~~~~~~~~~~-i~~~~~--  267 (385)
                      ..+.++||.|+ |++|...++.+...|+ +|++++ +..++.+..    ++.+.. .+  .|..+...... +.....  
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35678899987 9999999999999999 788876 444433322    223432 22  23333111111 111111  


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|++|+++|.
T Consensus       102 g~id~li~nAg~  113 (269)
T 3gk3_A          102 GKVDVLINNAGI  113 (269)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            369999999884

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.16  E-value=0.028  Score=51.76  Aligned_cols=87  Identities=18%  Similarity=0.062  Sum_probs=55.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc----hHHHHHH---HcCCCeE-EeCCCCCchhHHHHhhCC-Ccc
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS----EKFEIGK---RFGVTEF-VNSKNCGDKSIIIDMTDG-GAD  271 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~----~~~~~~~---~lg~~~v-v~~~~~~~~~~i~~~~~g-~~d  271 (385)
                      ..+|||+|+ |.+|...++.+...|+ +|+++.+++    ++.+.++   ..++..+ .|..   ....+.+.... ++|
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~---d~~~l~~~~~~~~~d   85 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR-PTYILARPGPRSPSKAKIFKALEDKGAIIVYGLIN---EQEAMEKILKEHEID   85 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTT---CHHHHHHHHHHTTCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecC---CHHHHHHHHhhCCCC
Confidence            357999998 9999999999988898 788888866    4554333   3454432 2332   23334444443 799


Q ss_pred             EEEEccCChH--HHHHHHHHhcc
Q 016660          272 YCFECVGLAS--LVQEAYACCRK  292 (385)
Q Consensus       272 ~vid~~g~~~--~~~~~~~~l~~  292 (385)
                      +||.+++...  ....+++.++.
T Consensus        86 ~Vi~~a~~~n~~~~~~l~~aa~~  108 (346)
T 3i6i_A           86 IVVSTVGGESILDQIALVKAMKA  108 (346)
T ss_dssp             EEEECCCGGGGGGHHHHHHHHHH
T ss_pred             EEEECCchhhHHHHHHHHHHHHH
Confidence            9999998632  12344555544

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=95.16  E-value=0.041  Score=48.15  Aligned_cols=100  Identities=14%  Similarity=0.021  Sum_probs=67.4

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHHcCCC-eEEeCCCCCchhHHHHhhCCCc
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~-~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      +.......++.+||-+|+|. |..+..+++.. +. +|++++.+++..+.+++.... .++..+-...    .  ..+.|
T Consensus        25 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~----~--~~~~f   96 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGP-GNSTELLTDRYGVN-VITGIDSDDDMLEKAADRLPNTNFGKADLATW----K--PAQKA   96 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTT-THHHHHHHHHHCTT-SEEEEESCHHHHHHHHHHSTTSEEEECCTTTC----C--CSSCE
T ss_pred             HHHhcCCCCCCEEEEecCcC-CHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHhCCCcEEEECChhhc----C--ccCCc
Confidence            44555677889999999874 77777888765 55 899999999988888765322 2222211011    1  13379


Q ss_pred             cEEEEccC------ChHHHHHHHHHhccCCceEEEec
Q 016660          271 DYCFECVG------LASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       271 d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      |+|+....      ....++.+.+.|+++ |.+++.-
T Consensus        97 D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~  132 (259)
T 2p35_A           97 DLLYANAVFQWVPDHLAVLSQLMDQLESG-GVLAVQM  132 (259)
T ss_dssp             EEEEEESCGGGSTTHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             CEEEEeCchhhCCCHHHHHHHHHHhcCCC-eEEEEEe
Confidence            99986542      134467888999997 9887654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=95.15  E-value=0.071  Score=45.70  Aligned_cols=95  Identities=18%  Similarity=0.272  Sum_probs=64.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-----------eEEeCCCCCchhHHHHhhC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-----------EFVNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-----------~vv~~~~~~~~~~i~~~~~  267 (385)
                      ++++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++....           .++..+-...     .+..
T Consensus        28 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~   99 (235)
T 3sm3_A           28 LQEDDEILDIGCGS-GKISLELASK-GY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-----SFHD   99 (235)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-----CSCT
T ss_pred             CCCCCeEEEECCCC-CHHHHHHHhC-CC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-----CCCC
Confidence            56889999999875 7777777776 77 899999999988888763221           1221111000     1122


Q ss_pred             CCccEEEEccC-----Ch----HHHHHHHHHhccCCceEEEecc
Q 016660          268 GGADYCFECVG-----LA----SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       268 g~~d~vid~~g-----~~----~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +.||+|+-...     ..    ..++.+.+.|+++ |+++....
T Consensus       100 ~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  142 (235)
T 3sm3_A          100 SSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPG-AYLYLVEF  142 (235)
T ss_dssp             TCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCC-eEEEEEEC
Confidence            37999985321     22    4578899999997 99887754

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.15  E-value=0.062  Score=47.33  Aligned_cols=77  Identities=16%  Similarity=0.117  Sum_probs=46.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC-chHHHHHHH----cCCCe-E--EeCCCCCchhH-HHHhhC--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEIGKR----FGVTE-F--VNSKNCGDKSI-IIDMTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~-~~~~~~~~~----lg~~~-v--v~~~~~~~~~~-i~~~~~--g  268 (385)
                      .+.++||+|+ |++|...++.+...|+ +|+++.+. ++..+.+++    .+... +  .|..+...... +.+...  +
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   84 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG   84 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            3578999987 9999999999999999 78777554 343443332    23221 2  23333111111 222211  3


Q ss_pred             CccEEEEccC
Q 016660          269 GADYCFECVG  278 (385)
Q Consensus       269 ~~d~vid~~g  278 (385)
                      ++|++|+++|
T Consensus        85 ~id~lv~~Ag   94 (264)
T 3i4f_A           85 KIDFLINNAG   94 (264)
T ss_dssp             CCCEEECCCC
T ss_pred             CCCEEEECCc
Confidence            7999999999

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.15  E-value=0.032  Score=51.51  Aligned_cols=91  Identities=11%  Similarity=0.093  Sum_probs=61.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASL  282 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~  282 (385)
                      .+|.|+|.|.+|...+..++..|+ .|++.++++++.+.+.++|+...   .+  ..+.+... ..+.|+||-++.... 
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~~~---~~--~~e~~~~a-~~~aDlVilavP~~~-   80 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFDVS---AD--LEATLQRA-AAEDALIVLAVPMTA-   80 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCCEE---SC--HHHHHHHH-HHTTCEEEECSCHHH-
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeee---CC--HHHHHHhc-ccCCCEEEEeCCHHH-
Confidence            569999999999999999999998 89999999999999999997422   11  11112111 114699999998653 


Q ss_pred             HHHHHHH---hccCCceEEEecc
Q 016660          283 VQEAYAC---CRKGWGKTIVLGV  302 (385)
Q Consensus       283 ~~~~~~~---l~~~~G~~v~~g~  302 (385)
                      ....++.   ++++ ..++.++.
T Consensus        81 ~~~vl~~l~~~~~~-~iv~Dv~S  102 (341)
T 3ktd_A           81 IDSLLDAVHTHAPN-NGFTDVVS  102 (341)
T ss_dssp             HHHHHHHHHHHCTT-CCEEECCS
T ss_pred             HHHHHHHHHccCCC-CEEEEcCC
Confidence            3333322   3453 45555554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=95.14  E-value=0.04  Score=49.09  Aligned_cols=91  Identities=13%  Similarity=0.030  Sum_probs=57.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCC--C-eEEeCCCCCchhHHHHhhCCCccEEEEc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV--T-EFVNSKNCGDKSIIIDMTDGGADYCFEC  276 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~--~-~vv~~~~~~~~~~i~~~~~g~~d~vid~  276 (385)
                      ++.+++|+|+|++|.+++..+...|. +|+++.++.++.+.+ ++++.  . .+.+..         .+..+.+|+||++
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~-~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~---------~~~~~~~DivIn~  187 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTKELAERFQPYGNIQAVSMD---------SIPLQTYDLVINA  187 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGSCEEEEEGG---------GCCCSCCSEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHccccCCeEEeeHH---------HhccCCCCEEEEC
Confidence            57899999999999999999989996 899999998876544 44442  1 122211         1101369999999


Q ss_pred             cCChHHHH---HHHHHhccCCceEEEecc
Q 016660          277 VGLASLVQ---EAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       277 ~g~~~~~~---~~~~~l~~~~G~~v~~g~  302 (385)
                      ++....-.   .....+.++ ..++.+..
T Consensus       188 t~~~~~~~~~~i~~~~l~~~-~~v~D~~y  215 (272)
T 1p77_A          188 TSAGLSGGTASVDAEILKLG-SAFYDMQY  215 (272)
T ss_dssp             CCC-------CCCHHHHHHC-SCEEESCC
T ss_pred             CCCCCCCCCCCCCHHHcCCC-CEEEEeeC
Confidence            99765211   012344554 55555544

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=95.13  E-value=0.08  Score=45.02  Aligned_cols=99  Identities=16%  Similarity=0.176  Sum_probs=66.4

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHH--HhhCC-CccE
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIII--DMTDG-GADY  272 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~--~~~~g-~~d~  272 (385)
                      .....++.+||=+|+|. |..+..+++. |. +|++++.+++.++.+++.+...+...+-    ..+.  ....+ .||+
T Consensus        47 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~fD~  119 (227)
T 3e8s_A           47 AILGRQPERVLDLGCGE-GWLLRALADR-GI-EAVGVDGDRTLVDAARAAGAGEVHLASY----AQLAEAKVPVGKDYDL  119 (227)
T ss_dssp             HHHHTCCSEEEEETCTT-CHHHHHHHTT-TC-EEEEEESCHHHHHHHHHTCSSCEEECCH----HHHHTTCSCCCCCEEE
T ss_pred             HhhcCCCCEEEEeCCCC-CHHHHHHHHC-CC-EEEEEcCCHHHHHHHHHhcccccchhhH----HhhcccccccCCCccE
Confidence            33445678999998865 6666777766 77 8999999999999888874333322111    1111  11233 5999


Q ss_pred             EEEccC-----ChHHHHHHHHHhccCCceEEEecc
Q 016660          273 CFECVG-----LASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       273 vid~~g-----~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      |+....     -...++.+.+.|+++ |.+++...
T Consensus       120 v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~~  153 (227)
T 3e8s_A          120 ICANFALLHQDIIELLSAMRTLLVPG-GALVIQTL  153 (227)
T ss_dssp             EEEESCCCSSCCHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             EEECchhhhhhHHHHHHHHHHHhCCC-eEEEEEec
Confidence            986432     235688999999997 99887643

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.13  E-value=0.017  Score=50.43  Aligned_cols=66  Identities=23%  Similarity=0.305  Sum_probs=43.1

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhh---CCCccEEEEccCC
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMT---DGGADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~---~g~~d~vid~~g~  279 (385)
                      +|||+|+ |.+|...+..+...|+ +|+++++++++.+.      ....|..+   ...+....   .+++|+||+++|.
T Consensus         3 ~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~~~~D~~~---~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            3 VIAITGSASGIGAALKELLARAGH-TVIGIDRGQADIEA------DLSTPGGR---ETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------CTTSHHHH---HHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChhHccc------cccCCccc---HHHHHHHHHHcCCCccEEEECCCC
Confidence            6899987 9999999998888999 89999887654211      00011111   11122222   2579999999874

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.13  E-value=0.12  Score=49.96  Aligned_cols=135  Identities=5%  Similarity=-0.094  Sum_probs=80.7

Q ss_pred             CEEEEEcC----CHHHHHHHHHHHHc--CCCEEEEEcCCchHHH-HHHHcCCC--eEEeCCCCCchhHHHHhhCC-CccE
Q 016660          203 STVVIFGL----GSIGLAVAEGARLC--GATRIIGVDVISEKFE-IGKRFGVT--EFVNSKNCGDKSIIIDMTDG-GADY  272 (385)
Q Consensus       203 ~~VlI~G~----g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~-~~~~lg~~--~vv~~~~~~~~~~i~~~~~g-~~d~  272 (385)
                      -+|.|+|+    |.+|...+..++..  +++-+.++++++++.+ .++++|+.  .++  .+      +.++... .+|+
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~--~d------~~ell~~~~vD~  111 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGF--DS------LESFAQYKDIDM  111 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEE--SC------HHHHHHCTTCSE
T ss_pred             CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceee--CC------HHHHhcCCCCCE
Confidence            36899998    88898777777665  6733445666776655 45667865  333  22      3344433 7999


Q ss_pred             EEEccCChHHHHHHHHHhccCCc------eEEEeccCCCCCcc-cccHHHHhh-cC-cEEEEeeecCCCCCCcHHHHHHH
Q 016660          273 CFECVGLASLVQEAYACCRKGWG------KTIVLGVDQPGSQL-SLSSFEVLH-SG-KILMGSLFGGLKAKSDIPILLKR  343 (385)
Q Consensus       273 vid~~g~~~~~~~~~~~l~~~~G------~~v~~g~~~~~~~~-~~~~~~~~~-~~-~~i~g~~~~~~~~~~~~~~~~~~  343 (385)
                      |+.|+......+.+..++..  |      +-|++......... ...+..... ++ ..+.-.  ..+.+...+..+.++
T Consensus       112 V~I~tp~~~H~~~~~~al~a--G~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~~v~--~~~R~~p~~~~~k~~  187 (479)
T 2nvw_A          112 IVVSVKVPEHYEVVKNILEH--SSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIIC--LQGRKSPYIVRAKEL  187 (479)
T ss_dssp             EEECSCHHHHHHHHHHHHHH--SSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEE--CGGGGCHHHHHHHHH
T ss_pred             EEEcCCcHHHHHHHHHHHHC--CCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEEE--eccccCHHHHHHHHH
Confidence            99999988878888888888  5      66666432111000 011112222 34 443222  223334567888888


Q ss_pred             HHcCCC
Q 016660          344 YMDKEL  349 (385)
Q Consensus       344 ~~~g~~  349 (385)
                      +++|.+
T Consensus       188 i~~G~i  193 (479)
T 2nvw_A          188 ISEGCI  193 (479)
T ss_dssp             HHTTTT
T ss_pred             HHcCCC
Confidence            988865

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=95.11  E-value=0.17  Score=43.03  Aligned_cols=100  Identities=14%  Similarity=0.145  Sum_probs=61.8

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH----HHHHcCCCeEEeCCCCCchhHHHHhhCCCccE
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE----IGKRFGVTEFVNSKNCGDKSIIIDMTDGGADY  272 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~----~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~  272 (385)
                      ..++++++||=+|+|. |..+..+++..+..+|++++.+++.++    .+++...-..+.. +....... ....+.||+
T Consensus        53 ~~~~~g~~VLDlGcGt-G~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~-d~~~~~~~-~~~~~~fD~  129 (210)
T 1nt2_A           53 LKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLF-DASKPWKY-SGIVEKVDL  129 (210)
T ss_dssp             CCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECS-CTTCGGGT-TTTCCCEEE
T ss_pred             cCCCCCCEEEEECCcC-CHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEc-CCCCchhh-cccccceeE
Confidence            4578899999999875 777888888775338999999987543    3333321111211 11110000 011246999


Q ss_pred             EEEccCChH----HHHHHHHHhccCCceEEEe
Q 016660          273 CFECVGLAS----LVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       273 vid~~g~~~----~~~~~~~~l~~~~G~~v~~  300 (385)
                      |+-....+.    .+.++.+.|+++ |+++..
T Consensus       130 V~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~i~  160 (210)
T 1nt2_A          130 IYQDIAQKNQIEILKANAEFFLKEK-GEVVIM  160 (210)
T ss_dssp             EEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEeccChhHHHHHHHHHHHHhCCC-CEEEEE
Confidence            986654331    257788999997 998877

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=95.11  E-value=0.066  Score=49.61  Aligned_cols=76  Identities=17%  Similarity=0.172  Sum_probs=44.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHH--HHHHHc-------CCCeEEeCCCCCchhHHHHhhCC-Ccc
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF--EIGKRF-------GVTEFVNSKNCGDKSIIIDMTDG-GAD  271 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~--~~~~~l-------g~~~vv~~~~~~~~~~i~~~~~g-~~d  271 (385)
                      .+|||+|+ |.+|...++.+...|+ +|+++++++++.  +.++.+       +....+-.-+......+.+...+ .+|
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence            47999997 9999999998888898 899998775531  222222       11111112222233335555545 689


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      +||++++.
T Consensus        81 ~vih~A~~   88 (372)
T 1db3_A           81 EVYNLGAM   88 (372)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999874

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=95.11  E-value=0.16  Score=43.77  Aligned_cols=101  Identities=18%  Similarity=0.224  Sum_probs=62.6

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchH----HHHHHHcCCCeEEeCCCCCchhHHHHhhCCCc
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEK----FEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~----~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      ...++++++||-+|+|. |..+..+++..| ..+|++++.+++.    .+.++....-.++..+- .... ......+.|
T Consensus        72 ~~~~~~~~~vLDlG~G~-G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~-~~~~-~~~~~~~~~  148 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAAS-GTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDA-RHPH-KYRMLIAMV  148 (233)
T ss_dssp             CCCCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCT-TCGG-GGGGGCCCE
T ss_pred             eecCCCCCEEEEEcccC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEccc-CChh-hhcccCCcE
Confidence            45678899999999876 888888898864 2389999998653    33444432112222211 1100 011223479


Q ss_pred             cEEEEccCCh-H---HHHHHHHHhccCCceEEEe
Q 016660          271 DYCFECVGLA-S---LVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       271 d~vid~~g~~-~---~~~~~~~~l~~~~G~~v~~  300 (385)
                      |+|+...... .   .+..+.+.|+++ |.++..
T Consensus       149 D~V~~~~~~~~~~~~~~~~~~~~Lkpg-G~l~i~  181 (233)
T 2ipx_A          149 DVIFADVAQPDQTRIVALNAHTFLRNG-GHFVIS  181 (233)
T ss_dssp             EEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEEEcCCCccHHHHHHHHHHHHcCCC-eEEEEE
Confidence            9998655443 1   255688999997 988763

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.11  E-value=0.053  Score=50.45  Aligned_cols=127  Identities=13%  Similarity=0.070  Sum_probs=77.5

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHc-CCCEEE-EEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          204 TVVIFGLGSIGLA-VAEGARLC-GATRII-GVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~g~vG~~-ai~la~~~-G~~~vi-~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      +|.|+|+|.+|.. .+..++.. ++ .++ ++++++++  ..++++...+++  +      +.++... .+|+|+.|+..
T Consensus         7 rvgiiG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~--~~~~~~~~~~~~--~------~~~ll~~~~vD~V~i~tp~   75 (362)
T 3fhl_A            7 KTGLAAFGMSGQVFHAPFISTNPHF-ELYKIVERSKEL--SKERYPQASIVR--S------FKELTEDPEIDLIVVNTPD   75 (362)
T ss_dssp             EEEESCCSHHHHHTTHHHHHHCTTE-EEEEEECSSCCG--GGTTCTTSEEES--C------SHHHHTCTTCCEEEECSCG
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCCe-EEEEEEcCCHHH--HHHhCCCCceEC--C------HHHHhcCCCCCEEEEeCCh
Confidence            6889999999985 66666544 77 554 55666655  334554333432  2      2333444 79999999999


Q ss_pred             hHHHHHHHHHhccCCceEEEeccCCCCCcccccHH------HHh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCCC
Q 016660          280 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF------EVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  350 (385)
Q Consensus       280 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~------~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~  350 (385)
                      ....+.+..++..  |+-|++...     +..+..      ... .++..+.-.  ....+...+..+.+++++|.+-
T Consensus        76 ~~H~~~~~~al~a--GkhVl~EKP-----~a~~~~ea~~l~~~a~~~g~~~~v~--~~~R~~p~~~~~k~~i~~G~iG  144 (362)
T 3fhl_A           76 NTHYEYAGMALEA--GKNVVVEKP-----FTSTTKQGEELIALAKKKGLMLSVY--QNRRWDADFLTVRDILAKSLLG  144 (362)
T ss_dssp             GGHHHHHHHHHHT--TCEEEEESS-----CCSSHHHHHHHHHHHHHHTCCEEEE--CGGGGSHHHHHHHHHHHTTTTS
T ss_pred             HHHHHHHHHHHHC--CCeEEEecC-----CCCCHHHHHHHHHHHHHcCCEEEEE--ecceeCHHHHHHHHHHHcCCCC
Confidence            8878888889988  566666432     222221      111 234444322  1223345678888999998653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=95.10  E-value=0.055  Score=47.23  Aligned_cols=100  Identities=18%  Similarity=0.242  Sum_probs=66.0

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC-C--eEEeCCCCCchhHHHHhhCCC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-T--EFVNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~--~vv~~~~~~~~~~i~~~~~g~  269 (385)
                      +.......++.+||=+|+|. |..+..+++. |..+|++++.+++.++.+++... .  .++. .+  ...  ..+..+.
T Consensus        36 l~~~~~~~~~~~vLD~GcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~d--~~~--~~~~~~~  108 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGF-GWHCIYAAEH-GAKKVLGIDLSERMLTEAKRKTTSPVVCYEQ-KA--IED--IAIEPDA  108 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHCCCTTEEEEE-CC--GGG--CCCCTTC
T ss_pred             HHHhhhccCCCEEEEECCCC-CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhhccCCeEEEE-cc--hhh--CCCCCCC
Confidence            44444556889999999866 6777777776 55589999999998888876532 1  1221 11  110  0112347


Q ss_pred             ccEEEEccCC------hHHHHHHHHHhccCCceEEEe
Q 016660          270 ADYCFECVGL------ASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       270 ~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      ||+|+....-      ...++.+.+.|+++ |.+++.
T Consensus       109 fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~  144 (253)
T 3g5l_A          109 YNVVLSSLALHYIASFDDICKKVYINLKSS-GSFIFS  144 (253)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             eEEEEEchhhhhhhhHHHHHHHHHHHcCCC-cEEEEE
Confidence            9999864421      34578899999997 998875

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=95.10  E-value=0.1  Score=46.18  Aligned_cols=95  Identities=21%  Similarity=0.277  Sum_probs=64.2

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHc---CCCEEEEEcCCchHHHHHHH----cCCC-e--EEeCCCCCchhHHHHhhC
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLC---GATRIIGVDVISEKFEIGKR----FGVT-E--FVNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~---G~~~vi~~~~~~~~~~~~~~----lg~~-~--vv~~~~~~~~~~i~~~~~  267 (385)
                      .++++.+||=+|+|. |..+..+++..   |+ +|++++.+++-++.+++    .+.. .  ++.. +      +..+..
T Consensus        67 ~~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~-D------~~~~~~  137 (261)
T 4gek_A           67 FVQPGTQVYDLGCSL-GAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG-D------IRDIAI  137 (261)
T ss_dssp             HCCTTCEEEEETCTT-THHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-C------TTTCCC
T ss_pred             hCCCCCEEEEEeCCC-CHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEeec-c------cccccc
Confidence            378999999999865 77777888864   56 89999999998887764    3332 1  2211 1      112222


Q ss_pred             CCccEEEEccCC--------hHHHHHHHHHhccCCceEEEecc
Q 016660          268 GGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       268 g~~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +.+|+|+-...-        ...++++.+.|++| |++++.-.
T Consensus       138 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG-G~lii~e~  179 (261)
T 4gek_A          138 ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG-GALVLSEK  179 (261)
T ss_dssp             CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cccccceeeeeeeecCchhHhHHHHHHHHHcCCC-cEEEEEec
Confidence            368888754321        13478899999997 99887643

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=95.10  E-value=0.099  Score=46.14  Aligned_cols=78  Identities=15%  Similarity=0.057  Sum_probs=46.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEE-EcCCchHHHH----HHHcCCCeEEeCCCCCchhHHHHhh------CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKFEI----GKRFGVTEFVNSKNCGDKSIIIDMT------DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~-~~~~~~~~~~----~~~lg~~~vv~~~~~~~~~~i~~~~------~g  268 (385)
                      .+.++||+|+ |++|...++.+...|+ +|++ ..++.++.+.    +++.+....+-.-+......+.+..      .+
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  103 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHG  103 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4578999987 9999999999999999 6644 5555554432    2233433222111212222222211      13


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      .+|++|+++|.
T Consensus       104 ~id~li~nAg~  114 (267)
T 4iiu_A          104 AWYGVVSNAGI  114 (267)
T ss_dssp             CCSEEEECCCC
T ss_pred             CccEEEECCCC
Confidence            79999999874

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=95.08  E-value=0.069  Score=52.37  Aligned_cols=82  Identities=12%  Similarity=0.012  Sum_probs=51.8

Q ss_pred             cCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCCc-------------h----HHHHHHHcCCCeEEeCCCCCc
Q 016660          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVIS-------------E----KFEIGKRFGVTEFVNSKNCGD  258 (385)
Q Consensus       198 ~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~-~~~~-------------~----~~~~~~~lg~~~vv~~~~~~~  258 (385)
                      .++++.++||+|+ |++|...++.+...|+++|+.+ .++.             +    ..+.+++.|....+-.-+...
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd  326 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD  326 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC
Confidence            3567899999987 9999998888888899667777 7763             1    223344557643222222222


Q ss_pred             hhHHHHh----h-CCCccEEEEccCC
Q 016660          259 KSIIIDM----T-DGGADYCFECVGL  279 (385)
Q Consensus       259 ~~~i~~~----~-~g~~d~vid~~g~  279 (385)
                      ...+..+    . .+.+|+||++.|.
T Consensus       327 ~~~v~~~~~~i~~~g~id~vVh~AGv  352 (525)
T 3qp9_A          327 AEAAARLLAGVSDAHPLSAVLHLPPT  352 (525)
T ss_dssp             HHHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEECCcC
Confidence            2222222    1 1368999999984

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.07  E-value=0.084  Score=47.63  Aligned_cols=69  Identities=14%  Similarity=0.079  Sum_probs=46.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      .+|||+|+ |.+|...++.+...|+ +|+++++++.+.+ +.  ++. ++.. +.. ...+.+... ++|+||++++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~--~~~-~~~~-Dl~-~~~~~~~~~-~~d~Vih~a~~   72 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIGNKA-IN--DYE-YRVS-DYT-LEDLINQLN-DVDAVVHLAAT   72 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC--------CCE-EEEC-CCC-HHHHHHHTT-TCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCCccc-CC--ceE-EEEc-ccc-HHHHHHhhc-CCCEEEEcccc
Confidence            57999997 9999999999999999 8999988865554 33  333 2222 222 333555444 79999999875

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.07  E-value=0.03  Score=49.46  Aligned_cols=75  Identities=15%  Similarity=0.072  Sum_probs=46.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe-EEeCCCCCchhH-HHHhh--CCCccEEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSI-IIDMT--DGGADYCFE  275 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vv~~~~~~~~~~-i~~~~--~g~~d~vid  275 (385)
                      .+.++||.|+ |++|...++.+...|+ +|++++++.++.+.   ..+.. ..|..+...... +.+..  -+++|++|+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~  102 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPSAD---PDIHTVAGDISKPETADRIVREGIERFGRIDSLVN  102 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCCSS---TTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccc---CceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            5678999987 9999999999999999 89999887654221   11111 123333111111 22111  137999999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      ++|.
T Consensus       103 nAg~  106 (260)
T 3un1_A          103 NAGV  106 (260)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9874

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=95.05  E-value=0.032  Score=48.64  Aligned_cols=76  Identities=12%  Similarity=0.107  Sum_probs=46.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCch---hHHHHhhC--CCccEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK---SIIIDMTD--GGADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~---~~i~~~~~--g~~d~vi  274 (385)
                      .+.++||.|+ |++|...++.+.. |+ +|+++++++++.+.+.++.....+..+- ...   ..+.+...  +++|++|
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~~~id~lv   80 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEIEGVEPIESDI-VKEVLEEGGVDKLKNLDHVDTLV   80 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTSTTEEEEECCH-HHHHHTSSSCGGGTTCSCCSEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhhcCCcceeccc-chHHHHHHHHHHHHhcCCCCEEE
Confidence            3678999987 9999988777655 87 8999999988887766543222221111 000   00111111  3699999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      +++|.
T Consensus        81 ~~Ag~   85 (245)
T 3e9n_A           81 HAAAV   85 (245)
T ss_dssp             ECC--
T ss_pred             ECCCc
Confidence            99985

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=95.05  E-value=0.24  Score=44.02  Aligned_cols=101  Identities=17%  Similarity=0.206  Sum_probs=64.0

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHH----cCCCeE--EeCCCCCchhHHHHh---
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR----FGVTEF--VNSKNCGDKSIIIDM---  265 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~----lg~~~v--v~~~~~~~~~~i~~~---  265 (385)
                      ...++++++||=.|+|+ |..++++++.+ +..+|++++.++++.+.+++    +|...+  +.. +  ... ....   
T Consensus        78 ~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~-D--~~~-~~~~~~~  152 (274)
T 3ajd_A           78 VLNPREDDFILDMCAAP-GGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINA-D--MRK-YKDYLLK  152 (274)
T ss_dssp             HHCCCTTCEEEETTCTT-CHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-C--HHH-HHHHHHH
T ss_pred             HhCCCCcCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeC-C--hHh-cchhhhh
Confidence            34578899988888765 55666777754 43499999999998887654    465332  221 1  111 1111   


Q ss_pred             hCCCccEEE-E--ccCC---------------------hHHHHHHHHHhccCCceEEEecc
Q 016660          266 TDGGADYCF-E--CVGL---------------------ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       266 ~~g~~d~vi-d--~~g~---------------------~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ..+.||+|+ |  |.|.                     ...++.+++.++++ |++++...
T Consensus       153 ~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~stc  212 (274)
T 3ajd_A          153 NEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD-GELVYSTC  212 (274)
T ss_dssp             TTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             ccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEC
Confidence            134799886 4  3332                     34477888899997 99887543

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=95.05  E-value=0.1  Score=47.69  Aligned_cols=72  Identities=21%  Similarity=0.199  Sum_probs=45.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHHcCCCeEE--eCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          204 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFV--NSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~~vv--~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      +|||+|+ |.+|...++.+... |+ +|+++++++++.+.+....--.++  |..+  ....+.+... ++|+||++++.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~-~~d~vih~A~~   77 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDAISRFLNHPHFHFVEGDISI--HSEWIEYHVK-KCDVVLPLVAI   77 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGGGGGGTTCTTEEEEECCTTT--CSHHHHHHHH-HCSEEEECBCC
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCCcchHHHhhcCCCeEEEeccccC--cHHHHHhhcc-CCCEEEEcccc
Confidence            6899997 99999999988887 88 899998887664332211111222  2222  1122333222 58999999874

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=95.05  E-value=0.1  Score=44.38  Aligned_cols=99  Identities=15%  Similarity=0.123  Sum_probs=65.1

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC--CeEEeCCCCCchhHHHHhhCCCc
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--~~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      +.......++.+||=+|+|. |..+..+++. |. ++++++.+++..+.+++.-.  -.++..+-...     .. .+.|
T Consensus        37 ~l~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~-----~~-~~~f  107 (220)
T 3hnr_A           37 ILEDVVNKSFGNVLEFGVGT-GNLTNKLLLA-GR-TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSF-----EV-PTSI  107 (220)
T ss_dssp             HHHHHHHTCCSEEEEECCTT-SHHHHHHHHT-TC-EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSC-----CC-CSCC
T ss_pred             HHHHhhccCCCeEEEeCCCC-CHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhc-----CC-CCCe
Confidence            33444556889999999865 6667777766 77 99999999998888876532  12222111011     01 1479


Q ss_pred             cEEEEccCC-----h---HHHHHHHHHhccCCceEEEec
Q 016660          271 DYCFECVGL-----A---SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       271 d~vid~~g~-----~---~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      |+|+....-     .   ..++.+.+.|+++ |.++...
T Consensus       108 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  145 (220)
T 3hnr_A          108 DTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG-GKIVFAD  145 (220)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             EEEEECcchhcCChHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            999865321     1   1578999999997 9988764

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=95.04  E-value=0.15  Score=49.33  Aligned_cols=97  Identities=12%  Similarity=0.205  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHHHH----cCCCeE-EeCCCCCchhHHHHhhCCCccEEE
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEF-VNSKNCGDKSIIIDMTDGGADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vi  274 (385)
                      ++++||=+|+|+ |..++++|+.++ -..|++++.++++.+.+++    +|...+ +...+  .. .+.....+.||.|+
T Consensus       117 ~g~~VLDl~aGp-G~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D--~~-~~~~~~~~~fD~Il  192 (479)
T 2frx_A          117 APQRVMDVAAAP-GSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD--GR-VFGAAVPEMFDAIL  192 (479)
T ss_dssp             CCSEEEESSCTT-SHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCC--ST-THHHHSTTCEEEEE
T ss_pred             CCCEEEEeCCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCC--HH-HhhhhccccCCEEE
Confidence            899998888765 666777887764 2389999999999887653    576433 22222  11 12222234799986


Q ss_pred             E---ccCCh-------------------------HHHHHHHHHhccCCceEEEecc
Q 016660          275 E---CVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       275 d---~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      -   |+|..                         ..+..++++|+++ |++++...
T Consensus       193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG-G~LvysTc  247 (479)
T 2frx_A          193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG-GTLVYSTC  247 (479)
T ss_dssp             EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCC-CEEEEecc
Confidence            4   55431                         2366788999997 99987543

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.04  E-value=0.069  Score=47.72  Aligned_cols=85  Identities=19%  Similarity=0.107  Sum_probs=56.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLV  283 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~  283 (385)
                      +|.|+|+|.+|...+..+.. |+ .|++.++++++.+.+.+.|+.. .+  .   .    +.. ...|+||.|+..+..+
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~~~~~~~~~~g~~~-~~--~---~----~~~-~~~D~vi~~v~~~~~~   69 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTFEKALRHQEEFGSE-AV--P---L----ERV-AEARVIFTCLPTTREV   69 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TS-CEEEECSSTHHHHHHHHHHCCE-EC--C---G----GGG-GGCSEEEECCSSHHHH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHCCCcc-cC--H---H----HHH-hCCCEEEEeCCChHHH
Confidence            58899999999988877777 98 7999999988888776666542 21  1   1    111 1479999999877545


Q ss_pred             HHHHH----HhccCCceEEEecc
Q 016660          284 QEAYA----CCRKGWGKTIVLGV  302 (385)
Q Consensus       284 ~~~~~----~l~~~~G~~v~~g~  302 (385)
                      ...++    .++++ ..++.++.
T Consensus        70 ~~v~~~l~~~l~~~-~~vv~~s~   91 (289)
T 2cvz_A           70 YEVAEALYPYLREG-TYWVDATS   91 (289)
T ss_dssp             HHHHHHHTTTCCTT-EEEEECSC
T ss_pred             HHHHHHHHhhCCCC-CEEEECCC
Confidence            44443    34453 45555543

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.04  E-value=0.083  Score=47.46  Aligned_cols=92  Identities=14%  Similarity=0.167  Sum_probs=57.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc-------hHHHHHH---HcCCCeE-EeCCCCCchhHHHHhhCCC
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-------EKFEIGK---RFGVTEF-VNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~-------~~~~~~~---~lg~~~v-v~~~~~~~~~~i~~~~~g~  269 (385)
                      ..+|||+|+ |.+|...++.+...|+ +|+++++++       ++.+.++   ..++..+ .|..+   ...+.+... +
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~~l~~~~~-~   76 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIND---HETLVKAIK-Q   76 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTC---HHHHHHHHT-T
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCC---HHHHHHHHh-C
Confidence            356999997 9999999998888898 788887876       5544333   3455432 23333   333444444 5


Q ss_pred             ccEEEEccCCh--HHHHHHHHHhccC--CceEE
Q 016660          270 ADYCFECVGLA--SLVQEAYACCRKG--WGKTI  298 (385)
Q Consensus       270 ~d~vid~~g~~--~~~~~~~~~l~~~--~G~~v  298 (385)
                      +|+||++++..  .....+++.++..  -.+++
T Consensus        77 ~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           77 VDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             CSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             CCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence            99999999853  2233444444432  14665

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=95.04  E-value=0.059  Score=48.86  Aligned_cols=97  Identities=13%  Similarity=0.172  Sum_probs=62.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC--------CC--eEEeCCCCCchhHHHHhhCC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--------VT--EFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg--------~~--~vv~~~~~~~~~~i~~~~~g  268 (385)
                      ...+.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-        ..  .++. .+  ... ......+
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~-~D--a~~-~l~~~~~  167 (304)
T 2o07_A           93 HPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV-GD--GFE-FMKQNQD  167 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-SC--HHH-HHHTCSS
T ss_pred             CCCCCEEEEECCCc-hHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE-Cc--HHH-HHhhCCC
Confidence            34668999998764 667777887665559999999998888777531        11  1221 11  111 1122234


Q ss_pred             CccEEE-EccC---------ChHHHHHHHHHhccCCceEEEec
Q 016660          269 GADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       269 ~~d~vi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .||+|| |...         ....++.+.+.|+++ |.++.-.
T Consensus       168 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  209 (304)
T 2o07_A          168 AFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQG  209 (304)
T ss_dssp             CEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CceEEEECCCCCCCcchhhhHHHHHHHHHhccCCC-eEEEEec
Confidence            799997 4332         134588999999997 9988754

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.03  E-value=0.081  Score=46.98  Aligned_cols=78  Identities=14%  Similarity=0.131  Sum_probs=48.4

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCCch---HHHHHH-HcCCCeE--EeCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIGK-RFGVTEF--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~~---~~~~~~-~lg~~~v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      .+.++||+|+   |++|...++.+...|+ +|++++++++   ..+.+. +.+...+  .|..+...... +....  -+
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4678999985   6999999999988999 8999888765   233222 2342222  23333111111 22111  23


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++|+++|.
T Consensus        84 ~id~lv~nAg~   94 (275)
T 2pd4_A           84 SLDFIVHSVAF   94 (275)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999999874

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=95.02  E-value=0.053  Score=46.88  Aligned_cols=95  Identities=18%  Similarity=0.239  Sum_probs=64.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC---eEEeCCCCCchhHHHHhhCCCccEEEE
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT---EFVNSKNCGDKSIIIDMTDGGADYCFE  275 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~---~vv~~~~~~~~~~i~~~~~g~~d~vid  275 (385)
                      +.++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++....   .++..+-...     .+..+.||+|+.
T Consensus        51 ~~~~~~vLDiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~  122 (242)
T 3l8d_A           51 VKKEAEVLDVGCGD-GYGTYKLSRT-GY-KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSL-----PFENEQFEAIMA  122 (242)
T ss_dssp             SCTTCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBC-----SSCTTCEEEEEE
T ss_pred             cCCCCeEEEEcCCC-CHHHHHHHHc-CC-eEEEEECCHHHHHHHHhhcccCCceEEEcchhcC-----CCCCCCccEEEE
Confidence            56889999999865 6667777776 77 899999999999888875321   1221111000     112337999986


Q ss_pred             ccCC------hHHHHHHHHHhccCCceEEEecc
Q 016660          276 CVGL------ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       276 ~~g~------~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ...-      ...++.+.+.|+++ |.+++...
T Consensus       123 ~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~  154 (242)
T 3l8d_A          123 INSLEWTEEPLRALNEIKRVLKSD-GYACIAIL  154 (242)
T ss_dssp             ESCTTSSSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cChHhhccCHHHHHHHHHHHhCCC-eEEEEEEc
Confidence            4432      24578899999997 98887653

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=95.02  E-value=0.03  Score=51.71  Aligned_cols=128  Identities=10%  Similarity=0.057  Sum_probs=77.2

Q ss_pred             EEEEEcCCHHHH-HHHH-HHH-HcCCCEEE-EEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccC
Q 016660          204 TVVIFGLGSIGL-AVAE-GAR-LCGATRII-GVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG  278 (385)
Q Consensus       204 ~VlI~G~g~vG~-~ai~-la~-~~G~~~vi-~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g  278 (385)
                      +|.|+|.|.+|. +++. +++ .-++ +++ ++++++++.+.+.+++...++  .+      +.++... .+|+|+.|++
T Consensus         4 rvgiiG~G~~g~~~~~~~~~~~~~~~-~l~av~d~~~~~~~~~~~~~~~~~~--~~------~~~ll~~~~~D~V~i~tp   74 (345)
T 3f4l_A            4 NCAFIGFGKSTTRYHLPYVLNRKDSW-HVAHIFRRHAKPEEQAPIYSHIHFT--SD------LDEVLNDPDVKLVVVCTH   74 (345)
T ss_dssp             EEEEECCSHHHHHHTHHHHTTCTTTE-EEEEEECSSCCGGGGSGGGTTCEEE--SC------THHHHTCTTEEEEEECSC
T ss_pred             EEEEEecCHHHHHHHHHHHHhcCCCe-EEEEEEcCCHhHHHHHHhcCCCceE--CC------HHHHhcCCCCCEEEEcCC
Confidence            588999999997 4666 433 4477 555 666666665555555433333  22      2333444 7999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHH------Hh-hcCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------VL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      .....+.+..++..  |+-|++-..     +..+...      .. .++..+.-.  ....+...+..+.+++++|.+
T Consensus        75 ~~~h~~~~~~al~a--Gk~Vl~EKP-----~a~~~~e~~~l~~~a~~~g~~~~v~--~~~r~~p~~~~~~~~i~~g~i  143 (345)
T 3f4l_A           75 ADSHFEYAKRALEA--GKNVLVEKP-----FTPTLAQAKELFALAKSKGLTVTPY--QNRRFDSCFLTAKKAIESGKL  143 (345)
T ss_dssp             GGGHHHHHHHHHHT--TCEEEECSS-----SCSSHHHHHHHHHHHHHHTCCEEEC--CGGGGCHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHHHHHHc--CCcEEEeCC-----CCCCHHHHHHHHHHHHHcCCeEEEE--echhcCHHHHHHHHHHhcCCC
Confidence            88878888888888  566666432     2222221      11 234544322  222233567788888888755

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=95.01  E-value=0.12  Score=50.25  Aligned_cols=77  Identities=18%  Similarity=0.243  Sum_probs=50.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch-------HHHHHHHcCCCeEEeCCCCCchhHHHHhh----C-CC
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-------KFEIGKRFGVTEFVNSKNCGDKSIIIDMT----D-GG  269 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~-------~~~~~~~lg~~~vv~~~~~~~~~~i~~~~----~-g~  269 (385)
                      .++||.|+ |++|...++.+...|+++|+.+.++..       ..+.+++.|....+-.-+......+..+.    . ++
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g~  319 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDAP  319 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTSC
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            89999987 999999888888889978888877532       22334556764332222222223222221    2 36


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|+||++.|.
T Consensus       320 ld~vVh~AGv  329 (496)
T 3mje_A          320 LTAVFHSAGV  329 (496)
T ss_dssp             EEEEEECCCC
T ss_pred             CeEEEECCcc
Confidence            8999999885

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.00  E-value=0.1  Score=45.07  Aligned_cols=96  Identities=15%  Similarity=0.042  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      .....|+|+|+|.+|...++.+...|.  |+++++++++.+.+. .|.. ++.-+. .....+.+..-.++|.||-+++.
T Consensus         7 ~~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~~~~~~~-~~~~-~i~gd~-~~~~~l~~a~i~~ad~vi~~~~~   81 (234)
T 2aef_A            7 AKSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKKVLR-SGAN-FVHGDP-TRVSDLEKANVRGARAVIVDLES   81 (234)
T ss_dssp             ---CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGGHHHHHH-TTCE-EEESCT-TCHHHHHHTTCTTCSEEEECCSC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHHHHHHHh-cCCe-EEEcCC-CCHHHHHhcCcchhcEEEEcCCC
Confidence            456789999999999999988888886  888888888887777 6643 333222 22222333322379999999988


Q ss_pred             hHHH---HHHHHHhccCCceEEEec
Q 016660          280 ASLV---QEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       280 ~~~~---~~~~~~l~~~~G~~v~~g  301 (385)
                      ...-   ....+.+.++ .+++...
T Consensus        82 d~~n~~~~~~a~~~~~~-~~iia~~  105 (234)
T 2aef_A           82 DSETIHCILGIRKIDES-VRIIAEA  105 (234)
T ss_dssp             HHHHHHHHHHHHHHCSS-SEEEEEC
T ss_pred             cHHHHHHHHHHHHHCCC-CeEEEEE
Confidence            7421   2333444453 4555543

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=94.99  E-value=0.021  Score=52.43  Aligned_cols=89  Identities=24%  Similarity=0.325  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++.+....+|+...    +  ..+ +..    ..|+|+-++...
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~--l~e-ll~----~aDvV~l~~P~t  211 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGLRQV----A--CSE-LFA----SSDFILLALPLN  211 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTEEEC----C--HHH-HHH----HCSEEEECCCCS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCceeC----C--HHH-HHh----hCCEEEEcCCCC
Confidence            57899999999999999999999999 89999988756666666665211    1  111 111    257777776632


Q ss_pred             H----HH-HHHHHHhccCCceEEEecc
Q 016660          281 S----LV-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       281 ~----~~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      .    .+ ...+..|+++ ..++.++.
T Consensus       212 ~~t~~li~~~~l~~mk~g-ailIN~ar  237 (330)
T 4e5n_A          212 ADTLHLVNAELLALVRPG-ALLVNPCR  237 (330)
T ss_dssp             TTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred             HHHHHHhCHHHHhhCCCC-cEEEECCC
Confidence            1    11 3566777775 66776653

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=94.98  E-value=0.14  Score=42.10  Aligned_cols=101  Identities=13%  Similarity=0.115  Sum_probs=66.7

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc----CCC----eEEeCCCCCchhHHHH
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT----EFVNSKNCGDKSIIID  264 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~----~vv~~~~~~~~~~i~~  264 (385)
                      +.......++.+||-+|+|. |..+..+++. +. ++++++.+++..+.+++.    +..    .++..+-   ..   .
T Consensus        44 l~~~~~~~~~~~vLdiG~G~-G~~~~~~~~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~---~  114 (194)
T 1dus_A           44 LVENVVVDKDDDILDLGCGY-GVIGIALADE-VK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL---YE---N  114 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST---TT---T
T ss_pred             HHHHcccCCCCeEEEeCCCC-CHHHHHHHHc-CC-eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECch---hc---c
Confidence            44555667889999999864 7777777777 66 999999999888776642    432    2222211   10   1


Q ss_pred             hhCCCccEEEEccCC-------hHHHHHHHHHhccCCceEEEeccC
Q 016660          265 MTDGGADYCFECVGL-------ASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       265 ~~~g~~d~vid~~g~-------~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ...+.+|+|+-...-       ...++.+.+.|+++ |.++.....
T Consensus       115 ~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  159 (194)
T 1dus_A          115 VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVVIQT  159 (194)
T ss_dssp             CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEEEES
T ss_pred             cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCC-CEEEEEECC
Confidence            113379999864431       24467788899997 998877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	385
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	1e-41
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	6e-37
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	7e-37
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	2e-36
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	1e-34
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	5e-33
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	2e-32
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	2e-32
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	5e-31
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	3e-30
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	4e-30
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	3e-28
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	8e-22
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	2e-19
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	3e-19
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	7e-19
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	6e-18
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	7e-18
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	1e-17
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	1e-14
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	2e-14
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	9e-14
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	6e-13
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	7e-13
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	6e-12
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	1e-11
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	2e-11
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	7e-10
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	7e-10
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	6e-08
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	2e-07
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	1e-06
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	1e-05
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	0.002

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  143 bits (360), Expect = 1e-41
 Identities = 70/199 (35%), Positives = 109/199 (54%), Gaps = 1/199 (0%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AA+A    +PLVI+E+ VD P+++E+R++II T +CH+D+           
Sbjct: 2   TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE  G+VESVG  V     G+ VIP F++ C EC  C+S K N C       SP
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+V  +        + + 
Sbjct: 122 DVMSPKETRF-TCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESV 180

Query: 190 VGAAWRTANVEVGSTVVIF 208
             A     + +   TV+  
Sbjct: 181 NDAIDLMKHGKCIRTVLSL 199

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  130 bits (328), Expect = 6e-37
 Identities = 76/197 (38%), Positives = 107/197 (54%), Gaps = 1/197 (0%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGH   G+VESVGE V  +  GD VIP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP +  +     +       
Sbjct: 121 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEIN 179

Query: 191 GAAWRTANVEVGSTVVI 207
            A     + +   TVV 
Sbjct: 180 KAFELMHSGKSIRTVVK 196

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  130 bits (327), Expect = 7e-37
 Identities = 74/208 (35%), Positives = 108/208 (51%), Gaps = 12/208 (5%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I C+AA+A  P +PL ++ + V PP +HEVR++I+ + +C SD +    +  P+ 
Sbjct: 2   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVL-KEIIPSK 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA+GVVES+G  V  V  GD VIP F+  C  C  C+S   N C         
Sbjct: 61  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKT 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP +  N            
Sbjct: 121 GLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFL---------- 169

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAV 217
           V        +     ++  G G   + +
Sbjct: 170 VSTKLTLDQINKAFELLSSGQGVRSIMI 197

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  128 bits (323), Expect = 2e-36
 Identities = 66/176 (37%), Positives = 102/176 (57%), Gaps = 3/176 (1%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
            PP + CL+ CG STG GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D
Sbjct: 2   APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61

Query: 234 VISEKFEIGKRFGVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCR 291
           +  +KFE     G TE ++ K+       ++ +MT     Y FE +G    + +A A C 
Sbjct: 62  LNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCH 121

Query: 292 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK 347
             +G ++V+GV      L+     +L +G+   G +FGGLK++ D+P L+  ++ K
Sbjct: 122 MNYGTSVVVGVPPSAKMLTYDPM-LLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAK 176

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  124 bits (311), Expect = 1e-34
 Identities = 68/175 (38%), Positives = 95/175 (54%), Gaps = 4/175 (2%)

Query: 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235
           P  +CL+ CG +TG GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV   
Sbjct: 2   PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH 61

Query: 236 SEKFEIGKRFGVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 293
            +KF      G TE +N K+       +I + T+GG DY  EC G    +  A      G
Sbjct: 62  KDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCG 121

Query: 294 WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 348
            G T+VLG+  P  +L L    +L +G+ L GS+FGG K + ++  L+  YM K+
Sbjct: 122 SGVTVVLGLASPNERLPLDPL-LLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKK 174

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  120 bits (302), Expect = 5e-33
 Identities = 69/201 (34%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +C +D+         A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINAT-DPKKKAL 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC---SAFPFK 126
           FP +LGHE  G+VESVG  V     GD VIP F   C  C  C S   NLC     F + 
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
                  +  +     +G +I+HF+ VSSFS+YTV+  A++ +VD     +     +   
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPF 180

Query: 187 STGVGAAWRTANVEVGSTVVI 207
            +   A      ++ G ++  
Sbjct: 181 ESINDAI---DLMKEGKSIRT 198

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  118 bits (295), Expect = 2e-32
 Identities = 67/176 (38%), Positives = 106/176 (60%), Gaps = 3/176 (1%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
           P  + CL+ CG STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+
Sbjct: 2   PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI 61

Query: 235 ISEKFEIGKRFGVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRK 292
             +KF   K  G TE VN ++     + ++ +M++GG D+ FE +G    +  A +CC++
Sbjct: 62  NKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 121

Query: 293 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 348
            +G ++++G   P SQ    +  +L SG+   G++FGG K+K  +P L+  +M K+
Sbjct: 122 AYGVSVIVG-VPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKK 176

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  118 bits (297), Expect = 2e-32
 Identities = 73/200 (36%), Positives = 100/200 (50%), Gaps = 5/200 (2%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSG-TLVTP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA G+VES+GE V  V  GD VIP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D          L   V   
Sbjct: 121 GTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFA---LDPLITHVLPF 176

Query: 190 VGAAWRTANVEVGSTVVIFG 209
                    +  G ++    
Sbjct: 177 EKINEGFDLLRSGESIRTIL 196

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score =  114 bits (285), Expect = 5e-31
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 1/175 (0%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           VP      L CG+ TG GA      V   S+ V +G G++GL+    A++CGA+ II VD
Sbjct: 1   VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVD 60

Query: 234 VISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 293
           ++  + E+ K+ G T  +NSK     + I ++TDGG ++  E  G   ++++        
Sbjct: 61  IVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGI- 119

Query: 294 WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 348
            GK  V+G  Q G+       ++L  GK ++G + G    K  IP L++ Y   +
Sbjct: 120 LGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGK 174

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  112 bits (280), Expect = 3e-30
 Identities = 77/176 (43%), Positives = 112/176 (63%), Gaps = 3/176 (1%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
           P ++ CLL CG+STG GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+
Sbjct: 2   PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI 61

Query: 235 ISEKFEIGKRFGVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRK 292
             +KF   K FG TE +N ++     + ++I+MTDGG DY FEC+G   +++ A   C K
Sbjct: 62  NKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHK 121

Query: 293 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 348
           GWG ++V+GV   G +++   F  L +G+   G+ FGG K+   +P L+  YM K+
Sbjct: 122 GWGVSVVVGVAASGEEIATRPF-QLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKK 176

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  111 bits (279), Expect = 4e-30
 Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 5/176 (2%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
              R CL+ CG S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+
Sbjct: 2   NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI 61

Query: 235 ISEKFEIGKRFGVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRK 292
             EKF   K  G T+ +N +      + +I ++T GG DY  +C G A  ++ A  C   
Sbjct: 62  NGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVL 121

Query: 293 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 348
           GWG   V+G      ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+
Sbjct: 122 GWGSCTVVGA--KVDEMTIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKK 174

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  106 bits (265), Expect = 3e-28
 Identities = 75/176 (42%), Positives = 104/176 (59%), Gaps = 4/176 (2%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
           P +  CLL CGVSTG GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+
Sbjct: 2   PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL 61

Query: 235 ISEKFEIGKRFGVTEFVNSKNCGD--KSIIIDMTDGGADYCFECVGLASLVQEAYACCRK 292
             +KFE  K FG T+FVN  +  +    ++  MT+GG D+  ECVG   +++ A   C K
Sbjct: 62  NPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLK 121

Query: 293 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 348
           GWG ++++G          +    L +G+   GS+FGG K K  +P ++K Y+DK+
Sbjct: 122 GWGVSVLVGW--TDLHDVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKK 175

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 90.0 bits (222), Expect = 8e-22
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 3/191 (1%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
            AA+    G    +  + +  P   EV V+++ T +CH+D+     K      P +LGHE
Sbjct: 5   IAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-PLPAVLGHE 63

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             G++E++G NV  +  GD V+  +   C +C  C +     CS F  +       +   
Sbjct: 64  GSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNH 122

Query: 138 RF-KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                 +G    HF + SSF+ Y +    + VKV    P ++             A    
Sbjct: 123 ALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQAAIDSR 182

Query: 197 ANVEVGSTVVI 207
             + +   + I
Sbjct: 183 KGITLKPIIKI 193

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 83.0 bits (204), Expect = 2e-19
 Identities = 49/196 (25%), Positives = 71/196 (36%), Gaps = 26/196 (13%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPR 72
           P   +AA+  A G PL I+EV V  P   +V V+I  + +CH+D+   +         P 
Sbjct: 3   PQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPF 62

Query: 73  ILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
           I GHE +G V +VG  V  V EGD V IP     C  C  C +    LC +         
Sbjct: 63  IPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVN 122

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                                     EY + D  +V  +   V           ++  + 
Sbjct: 123 GGYA----------------------EYVLADPNYVGILPKNVKATIHPGKLDDINQILD 160

Query: 192 AAWRTANVEVGSTVVI 207
              R   +E G  V+ 
Sbjct: 161 QM-RAGQIE-GRIVLE 174

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 82.3 bits (202), Expect = 3e-19
 Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 16/191 (8%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A  A +  +PL   ++    P  ++V++ I    +CHSD+   + +    V+P + GHE
Sbjct: 2   KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHE 61

Query: 78  AIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            +G V +VG+ V+    GD V +   +  C  C  C     N C       +   P +  
Sbjct: 62  IVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPG 121

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP-NRACLLSCGVSTGVGAAWR 195
                              +S+  V+   +V+++        RA  ++      +    +
Sbjct: 122 HTLG--------------GYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRGDVK 167

Query: 196 TANVEVGSTVV 206
              V    T+ 
Sbjct: 168 YRFVIDNRTLT 178

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (201), Expect = 7e-19
 Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 20/200 (10%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPP--NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP 71
           P +       +  +     +   DP     H++ ++I    +C SD+            P
Sbjct: 4   PEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMP 63

Query: 72  RILGHEAIGVVESVG-ENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            ++GHE +G V  +G ++  G+  G  V +   +  C EC  C++     C+ F    S 
Sbjct: 64  LVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQ 123

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                               +VS   ++ Y  +    VV +   +      +   GV   
Sbjct: 124 PYE---------------DGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEA 168

Query: 190 VGAAWRTANVEVGSTVVIFG 209
                   +V    T+V + 
Sbjct: 169 F-ERMEKGDVRYRFTLVGYD 187

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 78.7 bits (193), Expect = 6e-18
 Identities = 42/202 (20%), Positives = 69/202 (34%), Gaps = 28/202 (13%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
            ++  A +     +PLV  E  +       + V I+   +C SDV  ++ +D     P I
Sbjct: 2   GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPII 61

Query: 74  LGHEAIGVVESVGENVDGVVEGD-----VVIPHFLADCTECVGCRS-KKGNLCSAFPFKI 127
           LGHE  G V  V      +         +++ +    C EC  C+  K+  LC       
Sbjct: 62  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV-- 119

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGV 186
             +      S +  LRG           +S + VLD    V+KV   +       L    
Sbjct: 120 --YGINRGCSEYPHLRG----------CYSSHIVLDPETDVLKVSEKITHRLP--LKEAN 165

Query: 187 STGVGAAWRTANVEVGSTVVIF 208
                 A           V+++
Sbjct: 166 -----KALELMESREALKVILY 182

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 78.4 bits (192), Expect = 7e-18
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 5/171 (2%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           +P   A +++  ++TG   A   A++E+GS+VV+ G+G++GL    GA+L GA RIIGV 
Sbjct: 1   MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG 59

Query: 234 VISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMT-DGGADYCFECVGLASLVQEAYACCRK 292
                 E  K +G T+ +N KN   +  ++ +T   G D      G +  + +A    + 
Sbjct: 60  SRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKP 119

Query: 293 GWGKTIVLGVDQPGSQLSLS--SFEVLHSGKILMGSLFGGLKAKSDIPILL 341
           G G    +     G  L +    +    + K + G L  G + +++    +
Sbjct: 120 G-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAERLRDM 169

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 1e-17
 Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 29/201 (14%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK---DF 66
            A KP    + +   PG+ L ++   +  P  +EV +R+    +C SDV +W+     +F
Sbjct: 2   AAAKP-NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNF 59

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
               P +LGHEA G VE VG +V  +  GD V     A       C+  + NL  +  F 
Sbjct: 60  IVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFC 119

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
            +P                         +   +   + A   K+   V P          
Sbjct: 120 ATPPDDG---------------------NLCRFYKHNAAFCYKLPDNVKPLVTHRFPLEK 158

Query: 187 STGVGAAWRTANVEVGSTVVI 207
           +     A+ T    +G  +++
Sbjct: 159 AL---EAFETFKKGLGLKIML 176

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 69.2 bits (168), Expect = 1e-14
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 31/198 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE  G +E VG+ V G  +GD+V  +       C  CR  + +LC +       
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSP------ 115

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                                    +++EY ++     +     V P     +    +  
Sbjct: 116 ----------------RWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE 159

Query: 190 VGAAWRTANVEVGSTVVI 207
                      +G  V+I
Sbjct: 160 AIDNLENFKA-IGRQVLI 176

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 68.9 bits (167), Expect = 2e-14
 Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 26/194 (13%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRILG 75
           +A+     + L +++  +  P   EV +++    +C SDV +++   + DF    P ++G
Sbjct: 4   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HEA G V  VG+NV  + +GD V       C  C  C+  K NLC    F  +P      
Sbjct: 63  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDD--- 119

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                              + + Y V       K+       +    S  +   V  A+ 
Sbjct: 120 ------------------GNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVD-AFE 160

Query: 196 TANVEVGSTVVIFG 209
            A  +  +T+ +  
Sbjct: 161 AARKKADNTIKVMI 174

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 67.2 bits (163), Expect = 9e-14
 Identities = 40/189 (21%), Positives = 64/189 (33%), Gaps = 18/189 (9%)

Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
              LS  + TG   A   A V  GSTV + G G +GLA A  ARL GA  +I  D+   +
Sbjct: 4   LTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR 62

Query: 239 FEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL---------------ASL 282
               K  G      S +      I  +      D   + VG                A++
Sbjct: 63  LAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATV 122

Query: 283 VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLK 342
           +       R   GK  + G+       ++ +   + S  I  G  +    +       + 
Sbjct: 123 LNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVM 181

Query: 343 RYMDKELEL 351
           +Y    ++ 
Sbjct: 182 KYNRALMQA 190

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 64.9 bits (157), Expect = 6e-13
 Identities = 39/217 (17%), Positives = 70/217 (32%), Gaps = 26/217 (11%)

Query: 18  RAAIATAPGEPLVID------EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP 71
           R  +    G+  V        +        H V ++++ T++C SD    +     A   
Sbjct: 3   RGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRG-RTTAQVG 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            +LGHE  G V   G +V+ +  GD+V   F   C  C  C+     +C           
Sbjct: 62  LVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVC-------LTVN 114

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTG 189
           P      +  +              +EY ++  A  +++K+           ++  V   
Sbjct: 115 PARAGGAYGYVDMGDWTG-----GQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQ 169

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA 226
           V +    A    G     F  G     V +  +   A
Sbjct: 170 VISLDD-APRGYG----EFDAGVPKKFVIDPHKTFSA 201

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 64.2 bits (155), Expect = 7e-13
 Identities = 35/203 (17%), Positives = 58/203 (28%), Gaps = 33/203 (16%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +        + L   E       S++  VR +  S C SD+              ILGHE
Sbjct: 2   KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
           A+G V  VG  V     GD VI          +  ++      +           +D   
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGV- 119

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                             F EY  ++ A  ++      +P +    LS  V+        
Sbjct: 120 ------------------FGEYFHVNDADMNLAI----LPKDVD--LSKLVTHVYHGFDH 155

Query: 196 TANVEVGSTVVIFGLGSIGLAVA 218
                +   +++       L  A
Sbjct: 156 -----IEEALLLMKDKPKDLIKA 173

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 61.6 bits (148), Expect = 6e-12
 Identities = 37/194 (19%), Positives = 66/194 (34%), Gaps = 28/194 (14%)

Query: 18  RAAIATAPGEPLVIDEV-IVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           +AA      +PL I++V         +V VRI    +CH+D+   +      + P++   
Sbjct: 1   KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60

Query: 77  EAIGVVESV---GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
                V  +    E V+G+ +GD VI H       C+ CR+ +   C    F        
Sbjct: 61  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDG- 119

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
                                 F+E+       V+K+   V           ++  +   
Sbjct: 120 ---------------------GFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL 158

Query: 194 WRTANVEVGSTVVI 207
            +   V +G  V+I
Sbjct: 159 EK-GEV-LGRAVLI 170

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 60.8 bits (146), Expect = 1e-11
 Identities = 46/194 (23%), Positives = 64/194 (32%), Gaps = 28/194 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRILGH 76
           +AA+     EPL I EV     +  EV VRI    +CH+D+             P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 77  EAIGVVESVGENVDGV-VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           E +G+VE VG  V  + V   V IP   + C  C  C S +  LC               
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKN---------- 111

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                         +     ++EY      +VVK+          L        V     
Sbjct: 112 ------------AGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLEKINE---VFDRML 156

Query: 196 TANVEVGSTVVIFG 209
              +  G  V+   
Sbjct: 157 KGQIN-GRVVLTLE 169

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.0 bits (144), Expect = 2e-11
 Identities = 37/173 (21%), Positives = 57/173 (32%), Gaps = 6/173 (3%)

Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
             +  C  +T   A         G TVVI G G +GL     AR  GA  +I +     +
Sbjct: 6   LAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR 65

Query: 239 FEIGKRFGVTEFVNSKNCGDKSIIIDMTD----GGADYCFECVGLASLVQEAYACCRKGW 294
            ++ +  G    +N +    +     + D     GAD+  E  G +  + E     R+G 
Sbjct: 66  LKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG- 124

Query: 295 GKTIVLGVDQPGSQLSLSSFEVLHS-GKILMGSLFGGLKAKSDIPILLKRYMD 346
           G   V GV  P   +    +E L        G              +  R   
Sbjct: 125 GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQ 177

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 55.3 bits (132), Expect = 7e-10
 Identities = 33/169 (19%), Positives = 65/169 (38%), Gaps = 8/169 (4%)

Query: 179 ACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237
              L+    T   A  + A  +  G+ V I G+G +G    +  ++     +I +DV  E
Sbjct: 9   MAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE 68

Query: 238 KFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT 297
           K ++ +R G    V+++    K ++      G +   + VG  + V        +  G+ 
Sbjct: 69  KLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRL 127

Query: 298 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD 346
           I++G           +  V+ S     GSL G      ++  L+   + 
Sbjct: 128 IIVGYGGELRF---PTIRVISSEVSFEGSLVGNYV---ELHELVTLALQ 170

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 7e-10
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 11/148 (7%)

Query: 182 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           LS G+      A R   V +G  V++ G G IG+     A+  GA +++  D+ + +   
Sbjct: 12  LSVGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 66

Query: 242 GKRFGVTEFVNSKNCGDKSIIIDMTD---GGADYCFECVGLASLVQEAYACCRKGWGKTI 298
            K  G    +       + I   +        +   EC G  + +Q      R G     
Sbjct: 67  AKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG---GT 123

Query: 299 VLGVDQPGSQLSLSSFEVLHSGKILMGS 326
           ++ V       ++           + G 
Sbjct: 124 LVLVGLGSEMTTVPLLHAAIREVDIKGV 151

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 49.6 bits (117), Expect = 6e-08
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 14/151 (9%)

Query: 182 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           LS GV      A R A V++G+TV++ G G IGL     A+  GA  +        + E+
Sbjct: 12  LSVGV-----HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP-RRLEV 65

Query: 242 GKRFGVTEFVNSKNCGDKSIII-----DMTDGGADYCFECVGLASLVQEAYACCRKGWGK 296
            K  G    +      ++   I            +   +C G    +       R   G 
Sbjct: 66  AKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRT-GGT 124

Query: 297 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSL 327
            +++G       +++           +    
Sbjct: 125 LMLVG--MGSQMVTVPLVNACAREIDIKSVF 153

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 8/161 (4%)

Query: 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG 231
           P         L C   T      R      G  V + G+G +G    + A       ++ 
Sbjct: 2   PQEQLAAVAPLLCAGITTYSP-LRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVA 59

Query: 232 VDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCR 291
                 K E  K  G  E VNS+N  + +  +       D+    V     + +     +
Sbjct: 60  FTTSEAKREAAKALGADEVVNSRNADEMAAHL----KSFDFILNTVAAPHNLDDFTTLLK 115

Query: 292 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 332
           +  G   ++G        S   F ++   + + GS+ GG+ 
Sbjct: 116 RD-GTMTLVGA-PATPHKSPEVFNLIMKRRAIAGSMIGGIP 154

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 31/159 (19%), Positives = 50/159 (31%), Gaps = 6/159 (3%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           +P + A  L CG  T V +         G  V I GLG IG      ++         + 
Sbjct: 1   IPSHLAAPLLCGGLT-VYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISK-AMGAETYVIS 58

Query: 234 VISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 293
             S K E   + G   ++ +   GD       T      C   +    +         K 
Sbjct: 59  RSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--DIDFNIMPKAMKV 116

Query: 294 WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 332
            G+ + + + +    LSL           +  S  G +K
Sbjct: 117 GGRIVSISIPEQHEMLSL--KPYGLKAVSISYSALGSIK 153

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 10/59 (16%), Positives = 20/59 (33%)

Query: 18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
          +A +    G PL + ++        EV +R+    L  +D           + P  +  
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG 60

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 20/206 (9%), Positives = 41/206 (19%), Gaps = 44/206 (21%)

Query: 15  IQCRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           I  +A + T  GEP         E+  D    +EV V+ + + +  SD+   +       
Sbjct: 2   ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKP 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
                                    G         +       +             + P
Sbjct: 62  AKTTGF-------------------GTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIP 102

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                                           L         P    ++A     G++  
Sbjct: 103 SHVNFG--------------------TWRTHALGNDDDFIKLPNPAQSKANGKPNGLTDA 142

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGL 215
                     +    +   G+ +   
Sbjct: 143 KSIETLYDGTKPLHELYQDGVANSKD 168

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	385
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	100.0
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	100.0
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	100.0
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	100.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	100.0
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	100.0
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	100.0
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.98
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.97
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.97
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.95
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.95
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.95
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.95
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.95
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.94
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.94
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.94
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.94
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.94
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.94
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.94
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.94
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.93
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.93
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.93
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.93
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.93
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.93
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.93
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.92
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.92
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.92
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.92
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.92
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.92
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.91
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.91
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.9
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.89
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.89
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.86
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.84
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.66
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.63
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.47
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.78
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.64
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.64
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.63
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.59
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.48
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.47
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.41
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.38
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.38
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.37
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.24
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.23
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.21
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.15
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.11
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.08
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.07
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.05
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.05
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.04
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.95
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.92
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.9
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.9
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.88
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.86
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.85
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.84
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.84
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.83
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.82
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.81
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.79
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.78
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.77
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	96.75
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	96.74
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.74
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.73
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.69
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.66
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.65
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.65
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.63
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	96.62
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.62
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	96.6
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.59
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.58
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.56
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.55
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.54
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.53
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.53
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.53
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.52
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.52
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.51
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.51
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.49
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.48
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.48
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.47
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.46
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.41
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.39
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.39
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.36
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.32
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.31
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.29
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.24
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.21
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.2
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	96.19
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.17
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.17
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.15
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.12
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.12
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.1
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.08
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	96.05
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.0
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	95.95
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.93
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.9
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.87
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.86
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.8
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.76
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.75
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.71
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.71
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.63
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	95.63
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.6
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.55
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.41
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	95.3
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.23
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	95.21
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.19
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.07
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.04
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	95.01
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.98
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.94
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.9
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	94.87
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.84
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.77
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.72
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.68
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.68
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	94.65
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.63
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	94.62
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	94.62
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	94.58
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.58
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.57
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.56
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	94.51
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	94.51
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	94.49
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.47
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	94.46
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	94.45
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.45
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.43
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.39
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	94.39
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.34
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.33
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.33
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	94.31
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	94.18
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	94.17
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.14
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	94.14
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.1
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	94.08
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.03
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.99
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.98
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	93.83
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.8
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	93.72
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	93.67
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	93.63
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	93.62
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	93.6
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.53
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.49
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.47
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.47
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.46
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.43
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	93.31
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.28
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	93.16
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	93.01
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	92.97
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.96
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	92.93
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	92.74
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	92.72
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.71
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.67
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.66
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	92.6
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	92.55
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	92.43
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.39
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.35
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	92.34
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	92.33
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	92.31
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.27
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.27
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.26
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	92.18
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	92.1
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.08
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	92.08
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.99
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.97
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	91.92
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	91.9
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	91.88
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.76
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	91.68
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	91.55
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	91.5
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	91.48
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	91.47
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	91.42
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.31
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.29
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.29
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	91.23
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	91.15
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.08
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	91.04
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	91.02
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	90.96
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.94
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	90.9
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	90.9
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	90.84
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.78
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	90.78
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	90.52
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.48
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	90.47
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.29
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.23
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	90.18
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	90.18
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.16
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	90.13
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.02
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	89.93
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	89.9
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	89.88
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	89.83
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.83
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	89.8
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.66
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	89.65
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	89.62
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	89.59
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.5
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	89.46
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	89.44
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	89.39
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.23
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	89.21
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.2
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	89.13
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	89.1
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	89.07
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.07
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.05
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	88.95
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	88.86
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	88.83
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	88.79
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	88.67
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	88.56
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.53
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.26
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	88.23
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	88.05
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	88.03
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.01
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	87.86
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	87.85
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	87.79
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.75
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	87.73
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	87.63
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	87.62
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	87.56
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	87.36
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.26
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	87.18
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	87.13
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	87.13
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	87.09
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	87.02
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	86.86
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	86.65
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	86.64
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	86.49
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	86.43
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	86.4
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	86.38
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	86.3
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	86.27
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	86.22
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	86.03
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	85.97
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.64
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	85.59
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	85.5
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	85.28
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	85.13
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	85.05
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	84.97
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.88
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	84.87
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	84.86
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	84.81
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	84.7
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	84.63
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.57
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	84.51
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	84.45
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	84.21
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	84.07
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	84.06
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	84.02
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.91
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	83.8
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	83.53
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	83.49
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	83.47
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	83.28
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	83.26
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	82.85
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	82.73
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	82.61
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	82.51
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	82.46
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	82.35
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	82.31
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	81.89
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	81.79
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	81.61
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	81.54
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	81.31
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	81.13
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	81.0
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	81.0
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	80.92
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	80.85
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	80.49
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	80.3
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	80.03

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=9.8e-39  Score=275.22  Aligned_cols=197  Identities=35%  Similarity=0.560  Sum_probs=175.8

Q ss_pred             CCCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCC
Q 016660           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        11 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      -.++|++||.++.+++.|++++++|+|+|+++||||||.|+|||++|++.+.+......+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v~   82 (199)
T d1cdoa1           3 VGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVT   82 (199)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTCC
T ss_pred             CCCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCCc
Confidence            35678999999999998999999999999999999999999999999999999877778899999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      +|++||||++.+..+|+.|.+|+.+++++|.........+....|..++. .+|...+++.+.|+|+||++++++++++|
T Consensus        83 ~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~Ggfaey~~v~~~~~~~i  161 (199)
T d1cdoa1          83 EFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKI  161 (199)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEE-ETTEEEEEGGGTCCSBSEEEEEGGGEEEC
T ss_pred             eecCCCEEEEeeeccccccccccCCCcccccccccccccccccCccccee-eccceeecccccCCceEEEEEchHHEEEC
Confidence            99999999999999999999999999999988776444444444433322 45666667777899999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEE
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~  208 (385)
                      |++++++++|++.+++.|++.++......+.|++|||+
T Consensus       162 P~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         162 DPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             CTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            99999999999999999999998777888999999984

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=267.76  Aligned_cols=196  Identities=38%  Similarity=0.595  Sum_probs=169.7

Q ss_pred             CCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCC
Q 016660           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      +..|+|||+++.++++|++++++|+|+|+++||||||.++|||++|+++++|.+....+|.++|||++|+|+++|++|++
T Consensus         2 ~~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~   81 (197)
T d2fzwa1           2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (197)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCcee
Confidence            45689999999999999999999999999999999999999999999999998877889999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      +++||||++.+..+|+.|.+|+.+.++.|.........+...+...++. .+|...+++.+.|+|+||+++++.+++++|
T Consensus        82 ~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~g~GgfAey~vvp~~~~~~vp  160 (197)
T d2fzwa1          82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKID  160 (197)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             cCCCCEEEEccccccccccccccCccccCccccccccccccCCccceec-cCCcceecccccccceeEEEechHHEEECC
Confidence            9999999999999999999999999999987654333333333322222 345566677788999999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEE
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~  208 (385)
                      +++++++||++++++.|++.++.....-+.+++|||+
T Consensus       161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999999999999999999876544445678888874

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=1.6e-36  Score=259.65  Aligned_cols=191  Identities=25%  Similarity=0.430  Sum_probs=158.6

Q ss_pred             eeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCC
Q 016660           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (385)
Q Consensus        15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (385)
                      ++|+|.++.+++++|+++++|.|+|+++||||||.+++||++|++++.|.++ ..+|.++|||++|+|+++|+++++|++
T Consensus         2 k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~-~~~P~i~GHE~~G~V~~vG~~v~~~~v   80 (194)
T d1f8fa1           2 KDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQV   80 (194)
T ss_dssp             EEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCCT
T ss_pred             ceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhccc-ccCCcccccceEEEeeecCccceeEcc
Confidence            5799999999999999999999999999999999999999999999998865 468999999999999999999999999


Q ss_pred             CCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccc-ccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSR-FKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        95 GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      ||||+.. ..+|+.|.+|+++++++|+.....+..|...+|... .....+....++.+.|+|+||.++++.+++++|++
T Consensus        81 GDrVv~~-~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~~  159 (194)
T d1f8fa1          81 GDHVVLS-YGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKD  159 (194)
T ss_dssp             TCEEEEC-CCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTT
T ss_pred             Cceeeee-cccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECCCC
Confidence            9999665 458999999999999999875433334555444322 22234455566777889999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  232 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~  232 (385)
                      ++++++                         ++|.|+|++|++++|+|+.+|+++|+++
T Consensus       160 i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         160 FPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             CCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            876543                         4456889999999999999999777765

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=100.00  E-value=4.5e-36  Score=259.46  Aligned_cols=193  Identities=38%  Similarity=0.596  Sum_probs=164.2

Q ss_pred             CCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCC
Q 016660           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      ..+|+|||+++.++++|++++++|+|+|+++||||||.++|||++|+++++|.++ ..+|.++|||++|+|+++|+++++
T Consensus         4 ~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~-~~~P~v~GHE~~G~V~~vG~~V~~   82 (202)
T d1e3ia1           4 GKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKK-ALFPVVLGHECAGIVESVGPGVTN   82 (202)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSC-CCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeecc-cccccccccccceEEeeecCCcee
Confidence            4679999999999999999999999999999999999999999999999998765 467999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCC---C-CCCCCCcccccccCCceeeccccccceeeeEeeccCce
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKIS---P-WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~---~-g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~  167 (385)
                      |++||||++.+...|+.|.+|+.+++++|........   . +....+..++ ..+|...+++.+.|+|+||+++++..+
T Consensus        83 ~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~v~~~~~~G~faey~~v~~~~l  161 (202)
T d1e3ia1          83 FKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRF-TCKGRSIYHFMGVSSFSQYTVVSEANL  161 (202)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSE-EETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             ccCCCEEEEEeeccccccccccCCcccccccccccccCccceeccccccccc-ccCceeeecccccCCceEEEEEehhhE
Confidence            9999999999999999999999999999998775211   1 1111121112 245667777888899999999999999


Q ss_pred             EECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEc
Q 016660          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG  209 (385)
Q Consensus       168 ~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G  209 (385)
                      +++|++++++.++++.+++.+++.++ +  .+++|++|.|+.
T Consensus       162 ~~lP~~~~~~~~~~~~~~~~~~~~a~-~--~~k~G~~V~vi~  200 (202)
T d1e3ia1         162 ARVDDEFDLDLLVTHALPFESINDAI-D--LMKEGKSIRTIL  200 (202)
T ss_dssp             EECCTTSCGGGGEEEEEEGGGHHHHH-H--HHHTTCCSEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHH-H--hCCCCCEEEEEE
Confidence            99999999999999998888887765 2  357899988763

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.3e-35  Score=250.91  Aligned_cols=172  Identities=27%  Similarity=0.339  Sum_probs=154.2

Q ss_pred             CCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCC
Q 016660           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        13 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      +|.||||++++++++|++++++|.|.|+++||||||.+++||++|++.++|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~   81 (175)
T d1llua1           2 LPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTR   81 (175)
T ss_dssp             CCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred             cchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCccc
Confidence            5789999999999989999999999999999999999999999999999998754 578999999999999999999999


Q ss_pred             CCCCCEEEecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           92 VVEGDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        92 ~~~GdrV~~~~-~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      |++||||++.+ ...|+.|.+|+.+.+++|.....   +|...+|                   +|+||+++++++++++
T Consensus        82 ~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~---~G~~~~g-------------------g~aey~~v~~~~~~~i  139 (175)
T d1llua1          82 VKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN---TGYSVNG-------------------GYAEYVLADPNYVGIL  139 (175)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEEC
T ss_pred             cccCCEEEeccccccCCccccccCCcccccccccc---ccccccc-------------------ccceEEEechHHEEEC
Confidence            99999998876 45699999999999999987665   5666666                   9999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEE
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~  208 (385)
                      |++++++.++++.+++.|+++++ + +...+|++|||+
T Consensus       140 Pd~l~~~~a~~~~~~~~t~~~~~-~-~g~~~G~~VLVl  175 (175)
T d1llua1         140 PKNVKATIHPGKLDDINQILDQM-R-AGQIEGRIVLEM  175 (175)
T ss_dssp             CTTCCCCEEEECGGGHHHHHHHH-H-TTCCSSEEEEEC
T ss_pred             CCCCChhHHHHHHhHHHHHHHHH-H-hCCCCCCEEEeC
Confidence            99999999888888888888765 3 344579999984

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=100.00  E-value=1.7e-36  Score=260.45  Aligned_cols=194  Identities=37%  Similarity=0.641  Sum_probs=162.9

Q ss_pred             CCCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCC
Q 016660           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        11 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      +.+.+||||.+++++++|++++++|+|+|+++||||||.|+|||++|+++++|.++ ..+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~-~~~P~i~GHE~~G~Vv~~G~~v~   81 (198)
T d1p0fa1           3 AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAGVT   81 (198)
T ss_dssp             TTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECTTCC
T ss_pred             CCCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeeccc-cccccccceeeeeeeeecCcccc
Confidence            45678999999999998999999999999999999999999999999999998765 46899999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      +|++||||++.+..+|+.|.+|+++++++|+...+.+..|....+..++. ..+..++...+.|+|+||+.+++..++++
T Consensus        82 ~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~g~faey~~v~~~~~~ki  160 (198)
T d1p0fa1          82 CVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKI  160 (198)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEETTSEEEE
T ss_pred             cCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEe-eCCeeccccCCCccceeeEEecHHHEEEC
Confidence            99999999999999999999999999999998887544555544433332 45666777777899999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHH
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA  216 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~  216 (385)
                      |++++++.++...+...          .+.++++|||.|+|++|++
T Consensus       161 p~~~~~~~~~~~~~~~~----------~v~~~~~vlv~G~G~iGl~  196 (198)
T d1p0fa1         161 DPKINVNFLVSTKLTLD----------QINKAFELLSSGQGVRSIM  196 (198)
T ss_dssp             CTTSCGGGGEEEEECGG----------GHHHHHHHTTTSSCSEEEE
T ss_pred             CCCCCHHHHHHhhcchh----------hcCCCCEEEEECCCcceEE
Confidence            99998776655443322          2334456888898888753

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=4e-36  Score=254.64  Aligned_cols=170  Identities=24%  Similarity=0.363  Sum_probs=150.5

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC---CCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |+|+ ++++++ ++++++|+|+|+++||||||.+++||++|++++++...   ...+|.++|||++|+|+++|+++++|+
T Consensus         3 maAV-l~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~   80 (178)
T d1e3ja1           3 LSAV-LYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLK   80 (178)
T ss_dssp             EEEE-EEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCC
T ss_pred             eEEE-EEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCC
Confidence            5555 566776 99999999999999999999999999999998887543   245789999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||||++.+..+|+.|++|..++.++|....+.  .+...+|                   +|+||+++++++++++|++
T Consensus        81 ~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~--~~~~~~G-------------------~~aey~~v~~~~~~~iP~~  139 (178)
T d1e3ja1          81 KGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC--ATPPDDG-------------------NLARYYVHAADFCHKLPDN  139 (178)
T ss_dssp             TTCEEEECCEECCSSSHHHHTTCGGGCTTCEET--TBTTBCC-------------------SCBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECcccccCCccccccCCccccccccce--ecccccc-------------------ccceeeeecccceeeCCCC
Confidence            999999999999999999999999999776652  1222334                   9999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL  210 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~  210 (385)
                      +++++||++++.+.|||+++ +.+++++|++|||+|+
T Consensus       140 ~~~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         140 CNVKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             CCCGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             CCHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            99999999999999999975 7789999999999975

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=1.5e-35  Score=248.90  Aligned_cols=166  Identities=27%  Similarity=0.418  Sum_probs=152.2

Q ss_pred             eEEEeccCCCCcEEEEeecCCC-CCCeEEEEEeeeecccccccccccCCC---CCCCCccccCceeEEEEEeCCCCCCCC
Q 016660           18 RAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        18 ~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      ||++++++++||+++++|.|++ .++||||||.|++||++|++.++|.+.   .+.+|.++|||++|+|+++|+++++|+
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   80 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE   80 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence            7999999999999999999986 689999999999999999999988764   357899999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||||++.+..+|+.|.+|+++.+++|.....   .|+..+|                   +|+||+.+++++++++|++
T Consensus        81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  138 (171)
T d1h2ba1          81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GFAEFMRTSHRSVIKLPKD  138 (171)
T ss_dssp             TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEECGGGEEECCTT
T ss_pred             CCCEEEEcCccCCCCccccccccccccccccc---ceeeccc-------------------ccceeeeehhhcceecCCC
Confidence            99999999999999999999999999987765   5666666                   9999999999999999999


Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEE
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI  207 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI  207 (385)
                      ++++.++++.+++.|+|+++ +.+++ .|++|||
T Consensus       139 ~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         139 VRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             CCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             CCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            99998998888999999987 56777 8999998

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.6e-34  Score=244.28  Aligned_cols=175  Identities=23%  Similarity=0.335  Sum_probs=146.5

Q ss_pred             CCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCC--
Q 016660           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD--   90 (385)
Q Consensus        13 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~--   90 (385)
                      ++|.+||++++++++|++++++|+|.|+++||||||.++|||++|+++++|.++...+|.++|||++|+|+++|++|+  
T Consensus         1 m~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~   80 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDL   80 (184)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCT
T ss_pred             CCceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEecccccc
Confidence            357899999999999999999999999999999999999999999999999887777999999999999999999986  


Q ss_pred             ---CCCCCCEEEecCCCCCCCCccccCCCC-CCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeec-cC
Q 016660           91 ---GVVEGDVVIPHFLADCTECVGCRSKKG-NLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IA  165 (385)
Q Consensus        91 ---~~~~GdrV~~~~~~~~~~~~~c~~~~~-~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~-~~  165 (385)
                         ++++||||++.+..+|+.|++|+.+.+ +.|.+...   +|+...- ..+          ....|+|+||++++ +.
T Consensus        81 ~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~---~G~~~~~-~~~----------~~~~Gg~ae~~~v~~~~  146 (184)
T d1vj0a1          81 NGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGC-SEY----------PHLRGCYSSHIVLDPET  146 (184)
T ss_dssp             TSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCS-SST----------TCCCSSSBSEEEECTTC
T ss_pred             ccccccceeeeEeccccccccChhHhCccccccCCCcee---eccCCCC-CCC----------CCcceeCcCcEEechhH
Confidence               468999999999999999999999985 46877665   3432110 001          11234999999996 57


Q ss_pred             ceEECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEE
Q 016660          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (385)
Q Consensus       166 ~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~  208 (385)
                      +++++|+++++++      ++.+|++++ +.+++++|++|||+
T Consensus       147 ~v~~ip~~l~~~~------pl~~A~~a~-~~~~~~~G~~VlI~  182 (184)
T d1vj0a1         147 DVLKVSEKITHRL------PLKEANKAL-ELMESREALKVILY  182 (184)
T ss_dssp             CEEEECTTCCEEE------EGGGHHHHH-HHHHHTSCSCEEEE
T ss_pred             cEEECCCCCCHHH------HHHHHHHHH-HHhCCCcCCEEEEe
Confidence            8999999998753      345677755 67899999999997

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=6.2e-34  Score=245.02  Aligned_cols=194  Identities=36%  Similarity=0.585  Sum_probs=161.4

Q ss_pred             CCCCeeeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCC
Q 016660           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (385)
Q Consensus        11 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (385)
                      +.+.++|||.++.++++|++++++|+|+|+++||||||.++|||++|++.++|.++. .+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~-~~P~i~GHE~~G~Vv~vG~~v~   81 (198)
T d2jhfa1           3 AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEGVT   81 (198)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTTCC
T ss_pred             CCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCccc-ccceecccceeEEEEecCcccc
Confidence            456789999999999999999999999999999999999999999999999998764 6799999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEEC
Q 016660           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (385)
Q Consensus        91 ~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~i  170 (385)
                      ++++||||++.+..+|+.|.+|+++..++|.........|...++..++. .+|...+++.+.|+|+||+++++.+++++
T Consensus        82 ~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~G~fAEy~~v~~~~~~~~  160 (198)
T d2jhfa1          82 TVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKI  160 (198)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEEGGGEEEC
T ss_pred             CcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCcccccc-ccCceeccCCCCCcccCeEEeCHHHeEEC
Confidence            99999999999999999999999999999998876544444433322222 45666777778899999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEc
Q 016660          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG  209 (385)
Q Consensus       171 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G  209 (385)
                      |++++++.++...+++.+...   ....+++|++|+|+.
T Consensus       161 p~~~~~e~l~~~~~~~~~v~~---g~~~l~~G~~VaVi~  196 (198)
T d2jhfa1         161 DAAFALDPLITHVLPFEKINE---GFDLLRSGESIRTIL  196 (198)
T ss_dssp             CTTSCCGGGEEEEEEGGGHHH---HHHHHHTTCCSEEEE
T ss_pred             CCCCCHHHHHHHHHHHHhhhh---CCceeeCCCEEEEEE
Confidence            999988776655444433222   223467899988863

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-34  Score=245.30  Aligned_cols=181  Identities=19%  Similarity=0.264  Sum_probs=151.4

Q ss_pred             CCCeeeeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCC
Q 016660           12 GKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (385)
Q Consensus        12 ~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (385)
                      +.|.+|||+++.++++.  +++.+.+.++++++||||||.|+|||++|++++.|.++...+|+++|||++|+|+++|+++
T Consensus         2 ~~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~v   81 (192)
T d1piwa1           2 SYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKS   81 (192)
T ss_dssp             CTTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTC
T ss_pred             CCCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhccccc
Confidence            45778999999998864  6777777677899999999999999999999999988878899999999999999999998


Q ss_pred             -CCCCCCCEEEecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCce
Q 016660           90 -DGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (385)
Q Consensus        90 -~~~~~GdrV~~~~~-~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~  167 (385)
                       +.+++||||.+.+. ..|+.|.+|+.+++++|....... .+....|              ....|+|+||++++++++
T Consensus        82 ~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~-~~~~~~G--------------~~~~Ggfaey~~v~~~~~  146 (192)
T d1piwa1          82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTY-SQPYEDG--------------YVSQGGYANYVRVHEHFV  146 (192)
T ss_dssp             CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESS-SCBCTTS--------------CBCCCSSBSEEEEEGGGE
T ss_pred             ccccCCCCeeeEeeeccCCCCchhhhcCCccccccccccc-ccccccc--------------cccccceeeEEEeehHHe
Confidence             56999999987774 469999999999999998766420 1111112              223349999999999999


Q ss_pred             EECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEE
Q 016660          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (385)
Q Consensus       168 ~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~  208 (385)
                      +++|++++++.|+++.+.+.|||+++ +.++++++++|||.
T Consensus       147 ~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         147 VPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             EECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            99999999988877765677999876 67899999999974

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=100.00  E-value=3.4e-36  Score=253.35  Aligned_cols=171  Identities=19%  Similarity=0.119  Sum_probs=143.0

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||+++.++++ +++.++|.|.|+++||+|||.++|||++|++.+++......+|+++|||++|+|+++|+++++|++||
T Consensus         1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGd   79 (177)
T d1jqba1           1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGD   79 (177)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecCCC
Confidence            89999999998 99999999999999999999999999999998877666667899999999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeecc--CceEECCCCC
Q 016660           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI--AHVVKVDPTV  174 (385)
Q Consensus        97 rV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~--~~~~~iP~~l  174 (385)
                      ||++.+..+|+.|.+|+++.+++|........+|...+|                   +|+||++++.  .+++++|+++
T Consensus        80 rV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G-------------------~~aEy~~vp~a~~~l~~iP~~~  140 (177)
T d1jqba1          80 RVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDG-------------------VFGEYFHVNDADMNLAILPKDV  140 (177)
T ss_dssp             EEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCC-------------------SSBSSEEESSHHHHCEECCTTS
T ss_pred             cEEEeeeeccccccchhhhhhcccccccccccccCCCCh-------------------hcCeeEEEEhhhCeEEECCCCc
Confidence            999999999999999999999999876543233444444                   9999999985  4699999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHH
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA  218 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai  218 (385)
                      ++++++....   +++.++        ++.+||.|+|++|++++
T Consensus       141 ~~~~~~~~~~---~~~~~~--------~~~vlv~g~gp~gl~aa  173 (177)
T d1jqba1         141 DLSKLVTHVY---HGFDHI--------EEALLLMKDKPKDLIKA  173 (177)
T ss_dssp             CGGGGEEEEE---ESGGGH--------HHHHHHHHHCCTTCSEE
T ss_pred             chHHHHHHHH---HHHHHh--------cCceEEECCCHHHhhee
Confidence            9887664432   233222        23377778888776543

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-34  Score=244.50  Aligned_cols=170  Identities=24%  Similarity=0.368  Sum_probs=147.3

Q ss_pred             eeeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC---CCCCCccccCceeEEEEEeCCCCCCC
Q 016660           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGV   92 (385)
Q Consensus        16 ~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (385)
                      .++|+++++|++ ++++++|+|+|+++||||||.+++||++|++.+++...   ...+|.++|||++|+|+++|+++++|
T Consensus         7 ~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~   85 (185)
T d1pl8a1           7 NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHL   85 (185)
T ss_dssp             CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSC
T ss_pred             CCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeee
Confidence            478999999987 99999999999999999999999999999999876432   25678999999999999999999999


Q ss_pred             CCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        93 ~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      ++||||++.+..+|+.|++|+.+++++|....+   .|.. .+                   |+|+||++++.++++++|
T Consensus        86 ~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~---~g~~~~~-------------------G~~aey~~~~~~~~~~lP  143 (185)
T d1pl8a1          86 KPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDD-------------------GNLCRFYKHNAAFCYKLP  143 (185)
T ss_dssp             CTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBC-------------------CSCBSEEEEEGGGEEECC
T ss_pred             cccccceecceeccccchhhccchhchhcccee---eeccccc-------------------ccceEEEEEchHHEEECC
Confidence            999999999999999999999999999987665   3322 23                   389999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCH
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS  212 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~  212 (385)
                      +++++++|++++  +.+|++++ +..++++|++||| |+|+
T Consensus       144 ~~~~~~~aa~~p--l~~a~~a~-~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         144 DNVKPLVTHRFP--LEKALEAF-ETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             TTCGGGEEEEEE--GGGHHHHH-HHHHTTCCSEEEE-ECCT
T ss_pred             CCCCHHHHHHHH--HHHHHHHH-HHhCCCCCCEEEE-EeCC
Confidence            999999987765  34566643 5678899999998 5554

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=5.6e-36  Score=257.26  Aligned_cols=191  Identities=19%  Similarity=0.237  Sum_probs=154.9

Q ss_pred             eeEEEeccCCCCcEEEEeecCCC-------CCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPP-------NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~-------~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (385)
                      +||++++++++ ++++++|.|++       .++||+|||.+++||++|+++++|.++ ..+|.++|||++|+|+++|++|
T Consensus         2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~-~~~P~v~GHE~~G~Vv~vG~~V   79 (201)
T d1kola1           2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDV   79 (201)
T ss_dssp             EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred             cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc-cccceeccceeeeeeecccccc
Confidence            69999999997 99999999865       469999999999999999999998875 4689999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeecc--Cce
Q 016660           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI--AHV  167 (385)
Q Consensus        90 ~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~--~~~  167 (385)
                      ++|++||||++.+..+|+.|++|+++++++|.........+....  ...          ....|+|+||+++|.  .++
T Consensus        80 ~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~--~~~----------~~~~Gg~aeyv~vp~~~~~l  147 (201)
T d1kola1          80 ENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGY--VDM----------GDWTGGQAEYVLVPYADFNL  147 (201)
T ss_dssp             CSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTC--TTS----------CCBCCCSBSEEEESSHHHHC
T ss_pred             ccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccc--cCC----------CccccccccEEEeehHHCeE
Confidence            999999999999999999999999999999976653211111000  000          011359999999975  369


Q ss_pred             EECCCCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 016660          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  226 (385)
Q Consensus       168 ~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~  226 (385)
                      ++||++.++.+++++.+++.++++++ ...+.+.++    +|+|++|++++|+||++|+
T Consensus       148 ~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g~----~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         148 LKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYGE----FDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             EECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHHH----HHHTCSCEEEECTTCSSCC
T ss_pred             EECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCeE----EeeCHHHHHHHHHHHHcCC
Confidence            99999877777777777888888865 444444443    4889999999999999885

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=4.7e-33  Score=235.45  Aligned_cols=166  Identities=25%  Similarity=0.393  Sum_probs=142.5

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC--------CCCCCccccCceeEEEEEeCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------PAVFPRILGHEAIGVVESVGEN   88 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~--------~~~~p~~~G~e~~G~V~~vG~~   88 (385)
                      |||++++++|+|++++++|.|+|++|||||||.++|||++|+++++|.+.        ...+|+++|||++|+|+++|++
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            89999999999999999999999999999999999999999999998653        2468999999999999999999


Q ss_pred             CCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCc-e
Q 016660           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-V  167 (385)
Q Consensus        89 v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~-~  167 (385)
                      +++|++||||++.+..+|+.|.+|+.++++.|....+   +|+..+|                   +|+||+++++.. +
T Consensus        81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~vp~~~~~  138 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (177)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             ccccccCceEeeeeccccccccccccccccccCCcce---eeecccc-------------------ccccEEEEEhHHeE
Confidence            9999999999999999999999999999999987765   5666666                   999999997665 5


Q ss_pred             EECCCCCCcccccc-cccchhhhhhhhhhhccCCCCCEEEE
Q 016660          168 VKVDPTVPPNRACL-LSCGVSTGVGAAWRTANVEVGSTVVI  207 (385)
Q Consensus       168 ~~iP~~l~~~~aa~-l~~~~~ta~~al~~~~~~~~~~~VlI  207 (385)
                      +++|+. ++.++|+ +..++.++++++ +.+++ .|++|||
T Consensus       139 ~~~~~~-~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         139 YKLRRV-KPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             EECSSS-CCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             EECCCC-ChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            555554 4455554 455778888865 55565 5899987

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.98  E-value=9.5e-33  Score=232.35  Aligned_cols=168  Identities=27%  Similarity=0.340  Sum_probs=144.6

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCC-CCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||++++++++|++++++|.|+|++|||||||++++||++|++++++... ...+|.++|||++|+|+++|++++++++|
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG   80 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence            89999999999999999999999999999999999999999998876543 46789999999999999999999999999


Q ss_pred             CEEEecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCC
Q 016660           96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (385)
Q Consensus        96 drV~~~~~-~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l  174 (385)
                      |||++.+. ..|+.|..|..+..++|.....   .|...+|                   +|+||+++++++++++|+++
T Consensus        81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~~  138 (171)
T d1rjwa1          81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDNT  138 (171)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTTC
T ss_pred             eEEeeccccccccccccccCCCccccccccc---cceeccC-------------------ccccceEecHHHEEECCCCC
Confidence            99988764 4588999999999999987765   5666555                   99999999999999999999


Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL  210 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~  210 (385)
                      +++.|+ +. ++.++++++. .+.+ +|++|||+|.
T Consensus       139 ~~e~A~-l~-~~~~~~~~~~-~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         139 IIEVQP-LE-KINEVFDRML-KGQI-NGRVVLTLED  170 (171)
T ss_dssp             CEEEEE-GG-GHHHHHHHHH-TTCC-SSEEEEECCC
T ss_pred             CHHHHH-HH-HHHHHHHHHH-hcCC-CCCEEEEeCC
Confidence            986654 44 4556776553 3455 5999999984

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.8e-32  Score=229.04  Aligned_cols=165  Identities=21%  Similarity=0.312  Sum_probs=133.0

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (385)
                      |||++..++++||++.++|.|+|+++||||||.++|||++|++.+.|.+....+|.++|||++|+|+++|++|++|++||
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGd   80 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGD   80 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCCCC
Confidence            79999999999999999999999999999999999999999999999887778899999999999999999999999999


Q ss_pred             EEEecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        97 rV~~~~-~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      ||.+.+ ..+|+.|.+|+++++++|...... +.+.....             +....|+|+||++++++++++||+...
T Consensus        81 rV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~-------------~~~~~GgfaEy~~v~~~~~~~ip~~~~  146 (179)
T d1uufa1          81 LVGVGCIVDSCKHCEECEDGLENYCDHMTGT-YNSPTPDE-------------PGHTLGGYSQQIVVHERYVLRIRVADI  146 (179)
T ss_dssp             EEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBCSST-------------TSBCCCSSBSEEEEEGGGCEECCCCCE
T ss_pred             EEEEcccccccCccccccCcccccCCCcccc-ccccCCCC-------------CcccccccceEEEechHHEEECCCCCc
Confidence            998777 558999999999999999875531 01111100             122235999999999999999996653


Q ss_pred             cccccccccchhhhhhhhhhhccC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANV  199 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~  199 (385)
                      ...  .. .++.++++++ .++.+
T Consensus       147 ~~~--~a-~~l~~a~~a~-~~a~v  166 (179)
T d1uufa1         147 EMI--RA-DQINEAYERM-LRGDV  166 (179)
T ss_dssp             EEE--CG-GGHHHHHHHH-HTTCS
T ss_pred             Chh--Hh-chhHHHHHHH-HHhCc
Confidence            322  22 2455667654 33444

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-30  Score=210.33  Aligned_cols=145  Identities=18%  Similarity=0.275  Sum_probs=130.2

Q ss_pred             eeeEEEeccCCCC--cEEE-EeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCC
Q 016660           16 QCRAAIATAPGEP--LVID-EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        16 ~~~a~~~~~~~~~--l~~~-~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      .|||++++++++|  +++. ++|.|.|++|||||||.+++||++|++.++|.+.. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (150)
T d1yb5a1           2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA   81 (150)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred             ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence            4899999988876  7774 68999999999999999999999999999987765 567899999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      |++||||+..+                             ..+                   |+|+||+++++++++++|
T Consensus        82 ~~vGdrV~~~~-----------------------------~~~-------------------G~~ae~~~v~~~~~~~iP  113 (150)
T d1yb5a1          82 FKKGDRVFTSS-----------------------------TIS-------------------GGYAEYALAADHTVYKLP  113 (150)
T ss_dssp             CCTTCEEEESC-----------------------------CSS-------------------CSSBSEEEEEGGGEEECC
T ss_pred             cccCccccccc-----------------------------ccc-------------------cccccccccccccccccc
Confidence            99999997432                             112                   399999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEE
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~  208 (385)
                      +++++++||++++...|+|+++...+....|+++||+
T Consensus       114 ~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         114 EKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             TTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             CCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            9999999999999999999998888899999999984

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.97  E-value=1.1e-29  Score=213.97  Aligned_cols=174  Identities=31%  Similarity=0.552  Sum_probs=159.8

Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +|++.||.++|++.|||+++.+.++++++++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++|+
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~   80 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS   80 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence            46778999999999999999899999999999999999999999999999999888999999999999999999999999


Q ss_pred             CCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      ++.+..+.+++++++++|+||||+|++.+++.++++++++ |+++.+|........+++...++.+++++.|++++.+..
T Consensus        81 ~~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~  159 (174)
T d1f8fa2          81 KTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSP  159 (174)
T ss_dssp             TTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSCH
T ss_pred             CCcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCc-eEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecCCCh
Confidence            9877777789999889999999999999899999999997 999999986656677899999999999999998777766


Q ss_pred             CCcHHHHHHHHHcCC
Q 016660          334 KSDIPILLKRYMDKE  348 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~  348 (385)
                      +++++++++++++|+
T Consensus       160 ~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         160 KKFIPELVRLYQQGK  174 (174)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCC
Confidence            678999999999984

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.2e-28  Score=198.86  Aligned_cols=141  Identities=19%  Similarity=0.200  Sum_probs=122.5

Q ss_pred             eEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        18 ~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      +.+.++.+|.|  |++.+.|.|.|++|||+|||.|++||++|+++++|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vG   81 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAG   81 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeeccccccc
Confidence            46889999987  8999999999999999999999999999999999998888899999999999999999999999999


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      |||+..                             ....                   |+|+||++++.+.++++|++++
T Consensus        82 drV~~~-----------------------------~~~~-------------------G~~ae~~~v~~~~~~~~P~~~~  113 (147)
T d1qora1          82 DRVVYA-----------------------------QSAL-------------------GAYSSVHNIIADKAAILPAAIK  113 (147)
T ss_dssp             CEEEES-----------------------------CCSS-------------------CCSBSEEEEEGGGEEECCTTSC
T ss_pred             ceeeee-----------------------------cccc-------------------ccceeEEEEehHHeEEcCcccc
Confidence            999621                             1112                   3899999999999999999998


Q ss_pred             ccccc--ccccchhhhhhhhhhhccCCCCCEEEE
Q 016660          176 PNRAC--LLSCGVSTGVGAAWRTANVEVGSTVVI  207 (385)
Q Consensus       176 ~~~aa--~l~~~~~ta~~al~~~~~~~~~~~VlI  207 (385)
                      ++.|+  ++++...|+++++.+ .++++|++|||
T Consensus       114 ~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI  146 (147)
T d1qora1         114 VDVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI  146 (147)
T ss_dssp             CCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence            87654  456666777776654 67899999998

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.95  E-value=2.6e-27  Score=198.95  Aligned_cols=172  Identities=38%  Similarity=0.682  Sum_probs=147.1

Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      +|.+||+|.|++.|+|+++.+.+++++|++|||+|+|++|++++|+||++|+++|++++++++|+++++++|+++++|++
T Consensus         1 ~P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~   80 (174)
T d1p0fa2           1 APLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPK   80 (174)
T ss_dssp             CCGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCC
Confidence            35779999999999999998899999999999999999999999999999998999999999999999999999999987


Q ss_pred             CCCc-hhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          255 NCGD-KSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       255 ~~~~-~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      +.+. ...+...+.+ ++|++||++|...+.+.+...++++.|+++.+|.......+++++..++ +++++.|+.++++.
T Consensus        81 ~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~~~  159 (174)
T d1p0fa2          81 DYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLL-TGRSLKGSVFGGFK  159 (174)
T ss_dssp             GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHH-TTCEEEECSGGGCC
T ss_pred             CchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHh-CCCEEEEEEeCCCC
Confidence            6443 3334454444 9999999999999899999988774389999998766667777765554 58899999887764


Q ss_pred             CCCcHHHHHHHHHcCC
Q 016660          333 AKSDIPILLKRYMDKE  348 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~  348 (385)
                       .++++++++++++|+
T Consensus       160 -~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         160 -GEEVSRLVDDYMKKK  174 (174)
T ss_dssp             -GGGHHHHHHHHHTTS
T ss_pred             -HHHHHHHHHHHHcCC
Confidence             458999999999884

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.95  E-value=2.4e-27  Score=198.91  Aligned_cols=171  Identities=36%  Similarity=0.725  Sum_probs=147.2

Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      +++.||++.|++.|+|+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++.+++|+++++++|+++++++.
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            35789999999999999988899999999999999999999999999999998999999999999999999999999876


Q ss_pred             CCC-chhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          255 NCG-DKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       255 ~~~-~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      +.+ ....+.+.+.+ |+|+||||+|.+.++++++++++++.|+++.+|...  .+.++++..++. ++++.|+.++++.
T Consensus        82 ~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~--~~~~i~~~~~~~-~k~i~Gs~~Gs~~  158 (174)
T d1e3ia2          82 ELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV--DEMTIPTVDVIL-GRSINGTFFGGWK  158 (174)
T ss_dssp             GCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSS--SEEEEEHHHHHT-TCEEEECSGGGCC
T ss_pred             cchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCC--CccccchHHHhc-cCEEEEEEeeCCC
Confidence            533 33334555545 999999999999999999999998338999999753  456777666655 6799999888887


Q ss_pred             CCCcHHHHHHHHHcCC
Q 016660          333 AKSDIPILLKRYMDKE  348 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~  348 (385)
                      ..++++++++++++|+
T Consensus       159 ~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         159 SVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHCcC
Confidence            7788999999998874

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=4e-28  Score=193.32  Aligned_cols=130  Identities=18%  Similarity=0.183  Sum_probs=116.7

Q ss_pred             eeEEEeccCCCCcEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCCCC
Q 016660           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (385)
Q Consensus        17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (385)
                      |||++++++++++++.+++.|.|+++||+|||.|++||++|++.++|.+.. ..+|.++|||++|+|           +|
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG   69 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG   69 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence            799999999999999999999999999999999999999999999998755 578999999999999           39


Q ss_pred             CEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCCCC
Q 016660           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (385)
Q Consensus        96 drV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~l~  175 (385)
                      |||...                              ..+                   |+|+||+++++++++++|++++
T Consensus        70 d~V~~~------------------------------~~~-------------------G~~aey~~v~~~~~~~~P~~~~  100 (131)
T d1iz0a1          70 RRYAAL------------------------------VPQ-------------------GGLAERVAVPKGALLPLPEGRP  100 (131)
T ss_dssp             EEEEEE------------------------------CSS-------------------CCSBSEEEEEGGGCEECCTTCC
T ss_pred             ceEEEE------------------------------ecc-------------------CccceeeeeCHHHeEEccCCCC
Confidence            999532                              222                   3999999999999999999999


Q ss_pred             cccccccccchhhhhhhhhhhccCCCCCEEEEE
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~  208 (385)
                      +++||++++.+.|||+++.+++  +.+++||++
T Consensus       101 ~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1         101 VVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             CEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            9999999999999999987765  459998863

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=7.1e-28  Score=197.85  Aligned_cols=148  Identities=20%  Similarity=0.134  Sum_probs=125.6

Q ss_pred             eeeeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCC
Q 016660           15 IQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        15 ~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      .+|||+++.+++++  ++++++|+|+|++|||||||.|+|||++|++.+.|.++. ...|.++|+|++|+|++  ..+++
T Consensus         2 ~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~   79 (152)
T d1xa0a1           2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPR   79 (152)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSS
T ss_pred             CceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCc
Confidence            47999999999876  558899999999999999999999999999998887764 56899999999999999  45678


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      |++||+|+....                        ..+...+                   |+|+||+++++++++++|
T Consensus        80 ~~~g~~v~~~~~------------------------~~~~~~~-------------------G~~aEy~~v~~~~~~~iP  116 (152)
T d1xa0a1          80 FREGDEVIATGY------------------------EIGVTHF-------------------GGYSEYARLHGEWLVPLP  116 (152)
T ss_dssp             CCTTCEEEEEST------------------------TBTTTBC-------------------CSSBSEEEECGGGCEECC
T ss_pred             cccCCEEEEecC------------------------ccccccC-------------------CCcceeeeehhhccccCC
Confidence            999999974321                        0222223                   399999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEc
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG  209 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G  209 (385)
                      ++++ .+||+++++.+|||.++....+++ |++|||+|
T Consensus       117 ~~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         117 KGLE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             TTHH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CCCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            9998 478889999999998888888875 99999975

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.2e-27  Score=199.87  Aligned_cols=167  Identities=19%  Similarity=0.268  Sum_probs=146.9

Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +|+++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++++++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence            5789999999999999999988899999999999996 9999999999999999 8999888999999999999999999


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      +++.++.+.+++.+++ ++|+|||++|+. .++.++++++++ |+++.+|..   ...++++..++.|++++.|+.+...
T Consensus        80 ~~~~~~~~~i~~~t~~~g~d~v~d~~g~~-~~~~~~~~l~~~-G~iv~~G~~---~~~~~~~~~~~~k~~~i~g~~~~~~  154 (174)
T d1yb5a2          80 HREVNYIDKIKKYVGEKGIDIIIEMLANV-NLSKDLSLLSHG-GRVIVVGSR---GTIEINPRDTMAKESSIIGVTLFSS  154 (174)
T ss_dssp             TTSTTHHHHHHHHHCTTCEEEEEESCHHH-HHHHHHHHEEEE-EEEEECCCC---SCEEECTHHHHTTTCEEEECCGGGC
T ss_pred             cccccHHHHhhhhhccCCceEEeecccHH-HHHHHHhccCCC-CEEEEEecC---CCCCCCHHHHHHCCCEEEEEEecCC
Confidence            9998887888999988 899999999965 499999999997 999999864   2467778888999999999975443


Q ss_pred             CCCCcHHHHHHHHHcC
Q 016660          332 KAKSDIPILLKRYMDK  347 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g  347 (385)
                       +.+++++++++++++
T Consensus       155 -~~~~~~~~~~~l~~g  169 (174)
T d1yb5a2         155 -TKEEFQQYAAALQAG  169 (174)
T ss_dssp             -CHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHH
Confidence             245677777777654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.94  E-value=6.1e-27  Score=197.55  Aligned_cols=173  Identities=41%  Similarity=0.725  Sum_probs=144.0

Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      |+++||+++|++.|+|+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|++++++||+++++++.
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~   81 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence            56789999999999999998889999999999999999999999999999998999999999999999999999999987


Q ss_pred             CC-CchhH-HHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          255 NC-GDKSI-IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       255 ~~-~~~~~-i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      +. +.... ++..+++++|+|||++|...+.+.+..+++++ +.++.++..........+....+.+++++.|+.+++..
T Consensus        82 ~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~  160 (176)
T d2fzwa2          82 DFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG-WGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWK  160 (176)
T ss_dssp             GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred             chhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCC-ceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCCc
Confidence            63 23333 44444459999999999999889999999996 88877765443333344434445578999999888777


Q ss_pred             CCCcHHHHHHHHHcCC
Q 016660          333 AKSDIPILLKRYMDKE  348 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~  348 (385)
                      .++++.++++++++|+
T Consensus       161 ~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         161 SVESVPKLVSEYMSKK  176 (176)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            6778999999998884

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.94  E-value=2e-27  Score=199.54  Aligned_cols=171  Identities=27%  Similarity=0.396  Sum_probs=147.2

Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +|+++|+.+++++.|||+++ +.+++++|++|||+|+|++|++++|+||.+|+++|++++++++|+++++++|+++++|+
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY   79 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence            57899999999999999976 77899999999999999999999999999999889999999999999999999999999


Q ss_pred             CCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHH--HHhhcCcEEEEeeecC
Q 016660          254 KNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF--EVLHSGKILMGSLFGG  330 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~--~~~~~~~~i~g~~~~~  330 (385)
                      ++.+..+.+++.+++ |+|+||||+|++..+++++++++++ |+++.+|.......++++..  ....+++++.|+....
T Consensus        80 ~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  158 (174)
T d1jqba2          80 KNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPG  158 (174)
T ss_dssp             GGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBCCCC
T ss_pred             cchhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcC-CEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEecCCC
Confidence            987777779999988 8999999999998899999999997 99999998765555554433  2345688999886544


Q ss_pred             CCCCCcHHHHHHHHHcCC
Q 016660          331 LKAKSDIPILLKRYMDKE  348 (385)
Q Consensus       331 ~~~~~~~~~~~~~~~~g~  348 (385)
                      .  +...++++++++.|+
T Consensus       159 ~--r~~~e~l~~li~~gk  174 (174)
T d1jqba2         159 G--RLRAERLRDMVVYNR  174 (174)
T ss_dssp             H--HHHHHHHHHHHHTTS
T ss_pred             C--cccHHHHHHHHHcCC
Confidence            3  245677888888774

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=6.1e-27  Score=198.58  Aligned_cols=168  Identities=23%  Similarity=0.311  Sum_probs=146.8

Q ss_pred             cccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~  255 (385)
                      ++.+|.+.|++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+++|++++++++|+++++++|+++++|+++
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~   82 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE   82 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc
Confidence            45688899999999999888889999999999999999999999999999988999999999999999999999999988


Q ss_pred             CCchhH---HHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHH-HhhcCcEEEEeeecC
Q 016660          256 CGDKSI---IIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE-VLHSGKILMGSLFGG  330 (385)
Q Consensus       256 ~~~~~~---i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~i~g~~~~~  330 (385)
                      .+..+.   +.+++++ |+|+||||+|++.+++.++++++++ |+++++|...+..+++++... ++.|++++.|++..+
T Consensus        83 ~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~  161 (182)
T d1vj0a2          83 TSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD  161 (182)
T ss_dssp             SCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC
T ss_pred             cchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCC-CEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCC
Confidence            654433   6777877 8999999999998899999999997 999999987666677777654 677999999997543


Q ss_pred             CCCCCcHHHHHHHHHcC
Q 016660          331 LKAKSDIPILLKRYMDK  347 (385)
Q Consensus       331 ~~~~~~~~~~~~~~~~g  347 (385)
                         .+++++++++++++
T Consensus       162 ---~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         162 ---TSHFVKTVSITSRN  175 (182)
T ss_dssp             ---HHHHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHHHHC
Confidence               36788999988776

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.94  E-value=9.8e-27  Score=195.67  Aligned_cols=171  Identities=37%  Similarity=0.755  Sum_probs=147.7

Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      .|++.||.++|++.|+|+++.+.+++++|++|+|+|+|++|++++|+|+++|+++||+++.+++|+++++++|+++++|+
T Consensus         2 ~P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~   81 (176)
T d1d1ta2           2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISP   81 (176)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECG
T ss_pred             cCHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECc
Confidence            35789999999999999998888999999999999999999999999999998899999999999999999999999998


Q ss_pred             CCCCch-hHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          254 KNCGDK-SIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       254 ~~~~~~-~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      ++.+.. ..+.+.+.+ |+|++||++|.......++..+.+++|+++.+|.........+++..++ +++++.|+.+++.
T Consensus        82 ~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~~  160 (176)
T d1d1ta2          82 KDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLF-TGRTWKGCVFGGL  160 (176)
T ss_dssp             GGCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGGGC
T ss_pred             cccchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHh-CCCEEEEEEEeCC
Confidence            875543 336666666 9999999999999888888877664489999998776666777766555 5889999988887


Q ss_pred             CCCCcHHHHHHHHH
Q 016660          332 KAKSDIPILLKRYM  345 (385)
Q Consensus       332 ~~~~~~~~~~~~~~  345 (385)
                      ..++++.++++++.
T Consensus       161 ~~~~dip~li~~~~  174 (176)
T d1d1ta2         161 KSRDDVPKLVTEFL  174 (176)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHh
Confidence            77778888887754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=9e-27  Score=195.35  Aligned_cols=168  Identities=24%  Similarity=0.296  Sum_probs=151.3

Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      |++.+||.++|++.|||+++ ++.+++++++|||+|+ |++|++++|+++..|+.+|++++++++|+++++++|++++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence            57899999999999999976 6789999999999996 999999999999999889999999999999999999999999


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      +++.+..+.+++.+.+ ++|++|||+|++.+++.++++++++ |+++.+|...  .+.+++...++.|++++.|++..+ 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~i~i~Gs~~~~-  155 (170)
T d1jvba2          80 ASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFG--ADLHYHAPLITLSEIQFVGSLVGN-  155 (170)
T ss_dssp             TTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSC--CCCCCCHHHHHHHTCEEEECCSCC-
T ss_pred             cCCcCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccC-CEEEEecccc--CccccCHHHHHhCCcEEEEEecCC-
Confidence            9887777778888877 8999999999999899999999997 9999999764  346788888899999999997543 


Q ss_pred             CCCCcHHHHHHHHHcCC
Q 016660          332 KAKSDIPILLKRYMDKE  348 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~  348 (385)
                        +++++++++++++|+
T Consensus       156 --~~d~~~~l~lv~~GK  170 (170)
T d1jvba2         156 --QSDFLGIMRLAEAGK  170 (170)
T ss_dssp             --HHHHHHHHHHHHTTS
T ss_pred             --HHHHHHHHHHHHcCC
Confidence              478999999999884

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.2e-26  Score=189.56  Aligned_cols=168  Identities=19%  Similarity=0.335  Sum_probs=144.4

Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +|+++||++. ++++||+++ ++++++++++|+|+|+|++|++++|+|+++|+++|++++++++|+++++++|+++++++
T Consensus         1 vS~e~Aal~e-pla~a~~a~-~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~   78 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI   78 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence            4788888775 788999975 67899999999999999999999999999999899999999999999999999999998


Q ss_pred             CCCCchhHHH--HhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecC
Q 016660          254 KNCGDKSIII--DMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  330 (385)
Q Consensus       254 ~~~~~~~~i~--~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  330 (385)
                      .+.+.....+  ..+.+ ++|+||||+|++..++.++++++++ |+++++|...  .+.++++..++.|++++.|++.  
T Consensus        79 ~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~g-G~iv~~G~~~--~~~~~~~~~~~~k~l~i~Gs~~--  153 (171)
T d1pl8a2          79 SKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGS--EMTTVPLLHAAIREVDIKGVFR--  153 (171)
T ss_dssp             SSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCC--SCCCCCHHHHHHTTCEEEECCS--
T ss_pred             cccccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCC-CEEEEEecCC--CCCccCHHHHHHCCcEEEEEeC--
Confidence            8755444322  23344 8999999999999899999999997 9999999764  4567888899999999999852  


Q ss_pred             CCCCCcHHHHHHHHHcCCCC
Q 016660          331 LKAKSDIPILLKRYMDKELE  350 (385)
Q Consensus       331 ~~~~~~~~~~~~~~~~g~~~  350 (385)
                        +.++++++++++++|+++
T Consensus       154 --~~~~~~~al~li~~gkid  171 (171)
T d1pl8a2         154 --YCNTWPVAISMLASKSVN  171 (171)
T ss_dssp             --CSSCHHHHHHHHHTTSCC
T ss_pred             --CHhHHHHHHHHHHcCCCC
Confidence              246899999999999764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.94  E-value=7.6e-26  Score=190.69  Aligned_cols=173  Identities=37%  Similarity=0.656  Sum_probs=143.5

Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      |+++||+|+|++.|+|+++.+.+++++|++|||+|+|++|++++++++..|+.+|++++++++|.++++++|+++++++.
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~   81 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence            56789999999999999998999999999999999999999999999999988999999999999999999999999876


Q ss_pred             CCC-chhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          255 NCG-DKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       255 ~~~-~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      +.. ........+.+ |+|++||++|.+.+.+.++.+++++ +..+.++...+..........++.+++++.|+.+++..
T Consensus        82 ~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~  160 (176)
T d2jhfa2          82 DYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEA-YGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFK  160 (176)
T ss_dssp             GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred             CchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcC-CcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCCC
Confidence            533 33334555555 9999999999999899999999996 55555544333333333334456689999999888877


Q ss_pred             CCCcHHHHHHHHHcCC
Q 016660          333 AKSDIPILLKRYMDKE  348 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~  348 (385)
                      .+++++++++++.+|+
T Consensus       161 ~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         161 SKDSVPKLVADFMAKK  176 (176)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHCcC
Confidence            7788999999998874

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.93  E-value=4.7e-26  Score=191.19  Aligned_cols=165  Identities=21%  Similarity=0.348  Sum_probs=145.3

Q ss_pred             cccccccccchhhhhhhhhhhc-cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          176 PNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       176 ~~~aa~l~~~~~ta~~al~~~~-~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      +.++|+++|++.|||+++.+.. .++++++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~   85 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR   85 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence            4688999999999999987655 479999999999999999999999999988999999999999999999999999988


Q ss_pred             CCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          255 NCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       255 ~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      + +..+.+.+.+.+ ++|+|||++|+..+++.++++++++ |+++.+|..   .+.+++...++.|++++.|++..+   
T Consensus        86 ~-~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~---~~~~~~~~~l~~k~~~i~Gs~~~~---  157 (172)
T d1h2ba2          86 R-DPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYG---GELRFPTIRVISSEVSFEGSLVGN---  157 (172)
T ss_dssp             S-CHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEE-EEEEECCCS---SCCCCCHHHHHHTTCEEEECCSCC---
T ss_pred             c-cHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCC-CEEEEEeCc---ccccCCHHHHHhCCcEEEEEEecC---
Confidence            7 344446777777 8999999999998899999999997 999999963   346788888999999999997554   


Q ss_pred             CCcHHHHHHHHHcCC
Q 016660          334 KSDIPILLKRYMDKE  348 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~  348 (385)
                      +++++++++++++|+
T Consensus       158 ~~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         158 YVELHELVTLALQGK  172 (172)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCC
Confidence            368999999999884

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=1.4e-26  Score=196.57  Aligned_cols=174  Identities=22%  Similarity=0.260  Sum_probs=145.7

Q ss_pred             ccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC
Q 016660          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (385)
Q Consensus       177 ~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~  255 (385)
                      +|||+++++++|||+++++.+++++|++|||+|+ |++|++++|+|+..|+ +|+++.+++++.++++++|+++++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence            5799999999999999999999999999999986 9999999999999999 8888888999999999999999999999


Q ss_pred             CCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC--
Q 016660          256 CGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK--  332 (385)
Q Consensus       256 ~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~--  332 (385)
                      .+..+.+++.+++ ++|++||++|++. ++.++++++++ |+++.+|.........+.. ..+.+++++.++......  
T Consensus        80 ~~~~~~v~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  156 (183)
T d1pqwa_          80 VDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPG-GRFIELGKKDVYADASLGL-AALAKSASFSVVDLDLNLKL  156 (183)
T ss_dssp             STHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEE-EEEEECSCGGGTTTCEEEG-GGGTTTCEEEECCHHHHHHH
T ss_pred             cCHHHHHHHHhCCCCEEEEEecccchH-HHHHHHHhcCC-CEEEEEccCCCCCCcccch-HHHhCCcEEEEEEccceecc
Confidence            7777889999988 9999999999865 99999999997 9999998654333333332 234578898887543211  


Q ss_pred             ----CCCcHHHHHHHHHcCCCCCCCc
Q 016660          333 ----AKSDIPILLKRYMDKELELDKF  354 (385)
Q Consensus       333 ----~~~~~~~~~~~~~~g~~~~~~~  354 (385)
                          .++.++++++++++|++++.|+
T Consensus       157 ~~~~~~~~~~~v~~~i~~G~i~p~Pi  182 (183)
T d1pqwa_         157 QPARYRQLLQHILQHVADGKLEVLPV  182 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSSCCCCC
T ss_pred             CHHHHHHHHHHHHHHHHCCCCceeCC
Confidence                1345788899999998887653

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=2.7e-26  Score=191.98  Aligned_cols=170  Identities=14%  Similarity=0.093  Sum_probs=136.6

Q ss_pred             CCcccccccccchhhhhhh---hhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe
Q 016660          174 VPPNRACLLSCGVSTGVGA---AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~a---l~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~  249 (385)
                      +|+++||+++++++|||++   +.+....+++++|||+|+ |++|.+++|+||.+|+ +|+++.+++++.++++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            5789999999999999966   445678899999999986 9999999999999999 8999999999999999999999


Q ss_pred             EEeCCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeee
Q 016660          250 FVNSKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  328 (385)
Q Consensus       250 vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  328 (385)
                      ++|+++ .+. .....+++ ++|+|||++|+.. ++.++++|+++ |+++.+|... ....+++...++.|++++.|...
T Consensus        80 vi~~~~-~~~-~~~~~~~~~gvD~vid~vgg~~-~~~~l~~l~~~-Griv~~G~~~-g~~~~~~~~~~~~k~~~i~Gv~~  154 (176)
T d1xa0a2          80 VLARED-VMA-ERIRPLDKQRWAAAVDPVGGRT-LATVLSRMRYG-GAVAVSGLTG-GAEVPTTVHPFILRGVSLLGIDS  154 (176)
T ss_dssp             EEECC-----------CCSCCEEEEEECSTTTT-HHHHHHTEEEE-EEEEECSCCS-SSCCCCCSHHHHHTTCEEEECCS
T ss_pred             eeecch-hHH-HHHHHhhccCcCEEEEcCCchh-HHHHHHHhCCC-ceEEEeeccc-CcccCCCHHHHHHCCcEEEEEeC
Confidence            999876 233 33344444 9999999999987 99999999997 9999999864 45578888899999999999742


Q ss_pred             cCCCCCCcHHHHHHHHHcCCCCC
Q 016660          329 GGLKAKSDIPILLKRYMDKELEL  351 (385)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~g~~~~  351 (385)
                      . ....+...++++.++ ++++|
T Consensus       155 ~-~~~~~~~~~~~~~la-g~lkP  175 (176)
T d1xa0a2         155 V-YCPMDLRLRIWERLA-GDLKP  175 (176)
T ss_dssp             S-SCCHHHHHHHHHHHH-TTTCC
T ss_pred             C-cCCHHHHHHHHHHHh-cccCC
Confidence            2 222345566666663 66655

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.93  E-value=1.4e-25  Score=188.97  Aligned_cols=172  Identities=42%  Similarity=0.694  Sum_probs=144.2

Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      |+++||+++|++.|+|+++.+.++++++++|+|+|+|++|++++++++..|..+|++++++++|+++++++|+++++|+.
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~   81 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN   81 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence            56889999999999999998899999999999999999999999999999998999999999999999999999999987


Q ss_pred             CCCch-hHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          255 NCGDK-SIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       255 ~~~~~-~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      +.+.. ..+.+.+.+ |+|++||++|...+++.+..+++++ +..+.++...+ .....+...++.+++++.|+.++++.
T Consensus        82 ~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g-~~~~~~~g~~~-~~~~~~~~~~~~~~~~i~Gs~~G~~~  159 (175)
T d1cdoa2          82 DHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKG-WGVSVLVGWTD-LHDVATRPIQLIAGRTWKGSMFGGFK  159 (175)
T ss_dssp             GCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCS-SSCEEECHHHHHTTCEEEECSGGGCC
T ss_pred             CcchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCC-CcceeEEEecC-CcccCccHHHHHCCcEEEEEEEeCCc
Confidence            75433 445666655 9999999999999889999998886 55544443332 33344445556679999999888877


Q ss_pred             CCCcHHHHHHHHHcCC
Q 016660          333 AKSDIPILLKRYMDKE  348 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~  348 (385)
                      .++++.++++++++|+
T Consensus       160 ~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         160 GKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            7789999999999884

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.3e-25  Score=187.50  Aligned_cols=165  Identities=22%  Similarity=0.322  Sum_probs=144.8

Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +++++||.++|+++|||+++ ++++++++++|+|+|+|++|++++|+||.+|+ +|++++++++|+++++++|+++++|+
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence            57899999999999999986 56899999999999999999999999999998 89999999999999999999999999


Q ss_pred             CCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      .+.+..+.+.+.+. ++|.++++++++..++.++++++++ |+++.+|...  .+.+++...++.|++++.|+...+   
T Consensus        79 ~~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~~~i~Gs~~~~---  151 (166)
T d1llua2          79 RQEDPVEAIQRDIG-GAHGVLVTAVSNSAFGQAIGMARRG-GTIALVGLPP--GDFPTPIFDVVLKGLHIAGSIVGT---  151 (166)
T ss_dssp             TTSCHHHHHHHHHS-SEEEEEECCSCHHHHHHHHTTEEEE-EEEEECCCCS--SEEEEEHHHHHHTTCEEEECCSCC---
T ss_pred             cchhHHHHHHHhhc-CCcccccccccchHHHHHHHHhcCC-cEEEEEEecC--CCccCCHHHHHhCCcEEEEEeecC---
Confidence            98666666666554 5777777888888899999999997 9999999753  457788889999999999986543   


Q ss_pred             CCcHHHHHHHHHcC
Q 016660          334 KSDIPILLKRYMDK  347 (385)
Q Consensus       334 ~~~~~~~~~~~~~g  347 (385)
                      +++++++++++++|
T Consensus       152 ~~d~~e~l~l~~~G  165 (166)
T d1llua2         152 RADLQEALDFAGEG  165 (166)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCc
Confidence            46899999999887

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.93  E-value=2.9e-25  Score=188.12  Aligned_cols=165  Identities=18%  Similarity=0.191  Sum_probs=140.4

Q ss_pred             cccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCc
Q 016660          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  258 (385)
Q Consensus       180 a~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~  258 (385)
                      +++.++++|||+++.+.+++++|++|||+|+ |++|++++|+||..|+ +||++++++++.++++++|+++++++++.+.
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~   86 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKTVNS   86 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTSCSC
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhcccccccH
Confidence            4678899999999999999999999999987 9999999999999999 8999999999999999999999999999888


Q ss_pred             hhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCC-----CCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          259 KSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ-----PGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       259 ~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~-----~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      .+.+.+.+.+ ++|+|||++|++. ++.++++++++ |+++.+|...     ...+..+++..++.|++++.|++...+.
T Consensus        87 ~~~~~~~~~~~Gvd~v~D~vG~~~-~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~~~  164 (182)
T d1v3va2          87 LEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQ  164 (182)
T ss_dssp             HHHHHHHHCTTCEEEEEESSCHHH-HHHHGGGEEEE-EEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGGCC
T ss_pred             HHHHHHHhhcCCCceeEEecCchh-hhhhhhhccCC-CeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEeccC
Confidence            8777777777 9999999999655 99999999997 9999998642     2234556778889999999999776653


Q ss_pred             C---CCcHHHHHHHHHcC
Q 016660          333 A---KSDIPILLKRYMDK  347 (385)
Q Consensus       333 ~---~~~~~~~~~~~~~g  347 (385)
                      .   .+.++++++++++|
T Consensus       165 ~~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         165 GDVREKALRDLMKWVLEG  182 (182)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHhCc
Confidence            2   13356677777665

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.93  E-value=1.1e-24  Score=182.42  Aligned_cols=165  Identities=22%  Similarity=0.342  Sum_probs=138.2

Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +|+++||++. ++++||+++ ++.+++++++|||+|+|++|++++|+||++|+ +|++++++++|+++++++|++.+++.
T Consensus         1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence            4788998875 778999976 67799999999999999999999999999999 89999999999999999999987765


Q ss_pred             CCCCch--hH---HHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeee
Q 016660          254 KNCGDK--SI---IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  328 (385)
Q Consensus       254 ~~~~~~--~~---i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  328 (385)
                      +.....  ..   +....++++|+||||+|++.+++.++++++++ |+++.+|...  .+.++++..++.|++++.|++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~--~~~~~~~~~~~~k~i~i~gs~~  154 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGS--QMVTVPLVNACAREIDIKSVFR  154 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCS--SCCCCCHHHHHTTTCEEEECCS
T ss_pred             cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcC-CceEEEecCC--CCCCcCHHHHHHCCCEEEEEEC
Confidence            543222  21   22333348999999999999899999999997 9999999753  4567888889999999999842


Q ss_pred             cCCCCCCcHHHHHHHHHcCC
Q 016660          329 GGLKAKSDIPILLKRYMDKE  348 (385)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~g~  348 (385)
                          +.++++++++++++|+
T Consensus       155 ----~~~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         155 ----YCNDYPIALEMVASGR  170 (170)
T ss_dssp             ----CSSCHHHHHHHHHTTS
T ss_pred             ----CHHHHHHHHHHHHcCC
Confidence                2368999999999984

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=5.1e-27  Score=194.78  Aligned_cols=152  Identities=18%  Similarity=0.155  Sum_probs=127.8

Q ss_pred             eeeeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCC
Q 016660           15 IQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (385)
Q Consensus        15 ~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~   91 (385)
                      .+|||+++++++++  +++++++.|+|++|||||||.|+|||++|++.+.|.++. +..|.++|+|++|+|++  +.+++
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~   79 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR   79 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence            46999999988765  999999999999999999999999999999999988764 56688999999999998  45678


Q ss_pred             CCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECC
Q 016660           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (385)
Q Consensus        92 ~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP  171 (385)
                      +++||+|......                        .|...+|                   +|+||+.+++++++++|
T Consensus        80 ~~~g~~v~~~~~~------------------------~g~~~~G-------------------~~aey~~v~~~~l~~iP  116 (162)
T d1tt7a1          80 FAEGDEVIATSYE------------------------LGVSRDG-------------------GLSEYASVPGDWLVPLP  116 (162)
T ss_dssp             CCTTCEEEEESTT------------------------BTTTBCC-------------------SSBSSEEECGGGEEECC
T ss_pred             cccceeeEeeecc------------------------ceecccc-------------------ccceEEEecHHHEEECC
Confidence            9999999754321                        3334444                   99999999999999999


Q ss_pred             CCCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CH
Q 016660          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GS  212 (385)
Q Consensus       172 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~  212 (385)
                      +++++++||++++..+|||.++.. .....+++|||.|+ |.
T Consensus       117 ~~ls~~~Aa~~~~~~~ta~~~~~~-~~~~~~~~Vli~ga~G~  157 (162)
T d1tt7a1         117 QNLSLKEAMVDQLLTIVDREVSLE-ETPGALKDILQNRIQGR  157 (162)
T ss_dssp             TTCCHHHHHHSCSTTSEEEEECST-THHHHHHHTTTTCCSSE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCcce
Confidence            999999999999999999986533 34556677888876 54

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.5e-25  Score=189.41  Aligned_cols=170  Identities=14%  Similarity=0.182  Sum_probs=137.0

Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +|+++||+++|+++|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +|++++++++|.++++++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence            5789999999999999999988889999999999976 8899999999999999 8999999999999999999999999


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhc-CcEEEEeeecC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS-GKILMGSLFGG  330 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~i~g~~~~~  330 (385)
                      +++.++.+.++++++| ++|+|+|++|++. ++.++.+++++ |+++.++... .....++...+..+ .+.+...++..
T Consensus        80 ~~~~d~~~~v~~~t~g~g~d~v~d~~g~~~-~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~  156 (179)
T d1qora2          80 YREEDLVERLKEITGGKKVRVVYDSVGRDT-WERSLDCLQRR-GLMVSFGNSS-GAVTGVNLGILNQKGSLYVTRPSLQG  156 (179)
T ss_dssp             TTTSCHHHHHHHHTTTCCEEEEEECSCGGG-HHHHHHTEEEE-EEEEECCCTT-CCCCCBCTHHHHHTTSCEEECCCHHH
T ss_pred             CCCCCHHHHHHHHhCCCCeEEEEeCccHHH-HHHHHHHHhcC-Ceeeeccccc-CCccccchhhhhccceEEEEeeEEee
Confidence            9998888889999988 8999999998766 99999999997 9999998754 33444554444443 34444332222


Q ss_pred             C-CCCC----cHHHHHHHHHcC
Q 016660          331 L-KAKS----DIPILLKRYMDK  347 (385)
Q Consensus       331 ~-~~~~----~~~~~~~~~~~g  347 (385)
                      + ..++    .+.++++++++|
T Consensus       157 ~~~~~~~~~~~~~~l~~lv~~G  178 (179)
T d1qora2         157 YITTREELTEASNELFSLIASG  178 (179)
T ss_dssp             HCCSHHHHHHHHHHHHHHHHTT
T ss_pred             ecCCHHHHHHHHHHHHHHHHCc
Confidence            1 1112    234456666665

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=5e-25  Score=184.19  Aligned_cols=168  Identities=21%  Similarity=0.393  Sum_probs=146.7

Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~  253 (385)
                      +|+++||+++|++.|||+++ +..+++++++|||+|+|++|++++|+|+..|+ +|++++++++|+++++++|+++++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence            57899999999999999976 56789999999999999999999999999999 89999999999999999999999999


Q ss_pred             CCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCC
Q 016660          254 KNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  333 (385)
Q Consensus       254 ~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  333 (385)
                      .+.+....+++.+++ +|.++++.++...++.++++++++ |+++.+|..  ..+.+++...++.+++++.|+....   
T Consensus        79 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~a~~~l~~~-G~i~~~g~~--~~~~~~~~~~~~~~~~~i~gs~~~~---  151 (168)
T d1rjwa2          79 LKEDAAKFMKEKVGG-VHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLP--PEEMPIPIFDTVLNGIKIIGSIVGT---  151 (168)
T ss_dssp             TTSCHHHHHHHHHSS-EEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCC--SSEEEEEHHHHHHTTCEEEECCSCC---
T ss_pred             ccchhhhhcccccCC-CceEEeecCCHHHHHHHHHHhccC-CceEecccc--cCCCCCCHHHHHHCCcEEEEEeeCC---
Confidence            997777767887765 445556677788899999999997 999999975  4566788888999999999986433   


Q ss_pred             CCcHHHHHHHHHcCCCC
Q 016660          334 KSDIPILLKRYMDKELE  350 (385)
Q Consensus       334 ~~~~~~~~~~~~~g~~~  350 (385)
                      +++++++++++++|+++
T Consensus       152 ~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2         152 RKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             HHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            47899999999999763

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.7e-25  Score=179.63  Aligned_cols=131  Identities=14%  Similarity=0.027  Sum_probs=110.8

Q ss_pred             eeEEEeccCCCC--cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC-CCCCccccCceeEEEEEeCCCCCCCC
Q 016660           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (385)
Q Consensus        17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (385)
                      |||+++.+++.+  +++++++.|+|++|||+|||.|+|||++|+....|.++. ..+|.++|+|++|+|+++|.+  .++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~~--~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSEDP--RFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECST--TCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeeccC--Ccc
Confidence            899999999876  778999999999999999999999999999999988654 578999999999999998764  699


Q ss_pred             CCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceEECCCC
Q 016660           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (385)
Q Consensus        94 ~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~  173 (385)
                      +||+|.+...                        ..|...+|                   +|+||+++++++++++|++
T Consensus        79 ~g~~v~~~~~------------------------~~g~~~~G-------------------~~Aey~~v~~~~vv~lP~~  115 (146)
T d1o89a1          79 AGQEVLLTGW------------------------GVGENHWG-------------------GLAEQARVKGDWLVAMPQG  115 (146)
T ss_dssp             TTCEEEEECT------------------------TBTTTBCC-------------------SSBSEEEECGGGCEECCTT
T ss_pred             ceeeEEeecc------------------------cceecCCC-------------------cceeeeeeeeeeEEECCCC
Confidence            9999975421                        13333334                   9999999999999999999


Q ss_pred             CCcccccccccchhhhhhh
Q 016660          174 VPPNRACLLSCGVSTGVGA  192 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~a  192 (385)
                      +|+++||+++++..||+.+
T Consensus       116 ls~~eAA~l~~a~~tA~~~  134 (146)
T d1o89a1         116 QAAKEISLSEAPNFAEAII  134 (146)
T ss_dssp             SCCEEECGGGHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            9999999999888888643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.6e-25  Score=187.13  Aligned_cols=165  Identities=21%  Similarity=0.212  Sum_probs=138.6

Q ss_pred             CcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC
Q 016660          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (385)
Q Consensus       175 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~  254 (385)
                      |.+.||.+.|+..|+|+++ +++++++|++|+|+|+|++|++++|+||.+|+ +|++++++++|+++++++|+++++++.
T Consensus         2 p~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeecc
Confidence            4567899999999999987 56899999999999999999999999999999 899999999999999999999999987


Q ss_pred             CCCchhHHHHhhCCCccEEEEccCChH--HHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCC
Q 016660          255 NCGDKSIIIDMTDGGADYCFECVGLAS--LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  332 (385)
Q Consensus       255 ~~~~~~~i~~~~~g~~d~vid~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  332 (385)
                      +...   ..+...+++|+++||+++..  .++.++++++++ |+++.+|...  ...+++...++.|++++.|+..++  
T Consensus        80 ~~~~---~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~~~i~Gs~~g~--  151 (168)
T d1piwa2          80 EEGD---WGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPE--QHEMLSLKPYGLKAVSISYSALGS--  151 (168)
T ss_dssp             GTSC---HHHHSCSCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCC--SSCCEEECGGGCBSCEEEECCCCC--
T ss_pred             chHH---HHHhhhcccceEEEEecCCccchHHHHHHHhhcc-ceEEEecccc--ccccccHHHHHhCCcEEEEEeeCC--
Confidence            6332   23333458999999988654  467899999997 9999999754  345666667888999999987554  


Q ss_pred             CCCcHHHHHHHHHcCCCC
Q 016660          333 AKSDIPILLKRYMDKELE  350 (385)
Q Consensus       333 ~~~~~~~~~~~~~~g~~~  350 (385)
                       +++++++++++++|+++
T Consensus       152 -~~~~~e~l~li~~gkIk  168 (168)
T d1piwa2         152 -IKELNQLLKLVSEKDIK  168 (168)
T ss_dssp             -HHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHHHHHHHhCCCC
Confidence             47899999999999763

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=7.7e-25  Score=182.96  Aligned_cols=165  Identities=19%  Similarity=0.293  Sum_probs=135.8

Q ss_pred             CCCcccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       173 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +.+++.+|.+.|+..|+|+++ +.+++++|++|||+|+|++|++++|+||++|+ ++|+++++++++++++++|++++++
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~   80 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVN   80 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEE
T ss_pred             cccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEE
Confidence            345677888999999999987 67899999999999999999999999999999 6778889999999999999999999


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      +.+...     ..... ++|++||++|.+..++.++++++++ |+++.+|... .....++...++.|++++.|+..++ 
T Consensus        81 ~~~~~~-----~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~l~~k~~~i~Gs~~~~-  152 (168)
T d1uufa2          81 SRNADE-----MAAHLKSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPA-TPHKSPEVFNLIMKRRAIAGSMIGG-  152 (168)
T ss_dssp             TTCHHH-----HHTTTTCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC--------CHHHHHTTTCEEEECCSCC-
T ss_pred             CchhhH-----HHHhcCCCceeeeeeecchhHHHHHHHHhcC-CEEEEeccCC-CCcccccHHHHHHCCcEEEEEeecC-
Confidence            887221     22223 8999999999988899999999997 9999999753 3445677788888999999997544 


Q ss_pred             CCCCcHHHHHHHHHcCCC
Q 016660          332 KAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       332 ~~~~~~~~~~~~~~~g~~  349 (385)
                        .+++++++++++++++
T Consensus       153 --~~d~~e~l~l~a~~~I  168 (168)
T d1uufa2         153 --IPETQEMLDFCAEHGI  168 (168)
T ss_dssp             --HHHHHHHHHHHHHHTC
T ss_pred             --HHHHHHHHHHHHHcCC
Confidence              4789999999987643

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.91  E-value=6.7e-27  Score=197.12  Aligned_cols=156  Identities=19%  Similarity=0.112  Sum_probs=128.1

Q ss_pred             eeeeEEEeccCCCC---c--EEEEeecCCCCCCeEEEEEeeeecccccccccccCCCC----------CCCCccccCcee
Q 016660           15 IQCRAAIATAPGEP---L--VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP----------AVFPRILGHEAI   79 (385)
Q Consensus        15 ~~~~a~~~~~~~~~---l--~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~----------~~~p~~~G~e~~   79 (385)
                      +|+||+++.++|.|   +  +..++|.|+|+++||||||.+++||++|+++++|.++.          ...|.++|+|++
T Consensus         2 ~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~   81 (175)
T d1gu7a1           2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL   81 (175)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred             ceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccc
Confidence            68999999999986   3  44577778889999999999999999999998876532          356789999999


Q ss_pred             EEEEEeCCCCCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeee
Q 016660           80 GVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEY  159 (385)
Q Consensus        80 G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~  159 (385)
                      |+|+++|.++.+++.||||....                             ...                   |+|+||
T Consensus        82 g~V~~~~~~~~~~~~g~~v~~~~-----------------------------~~~-------------------g~~aey  113 (175)
T d1gu7a1          82 FEVIKVGSNVSSLEAGDWVIPSH-----------------------------VNF-------------------GTWRTH  113 (175)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESS-----------------------------SCC-------------------CCSBSE
T ss_pred             cccccccccccccccccceeccc-----------------------------ccc-------------------ccccce
Confidence            99999999999999999996331                             112                   389999


Q ss_pred             EeeccCceEECCCCCCcccccccccchhhhhhhhhh-hccCCCCCEEEEEc-C-CHHHHHHHHH
Q 016660          160 TVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFG-L-GSIGLAVAEG  220 (385)
Q Consensus       160 v~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~-~~~~~~~~~VlI~G-~-g~vG~~ai~l  220 (385)
                      +++++++++++|++++.+.+  +.+..+|||+++.. ..++++|++|||.| + |++|++++|+
T Consensus       114 ~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ~  175 (175)
T d1gu7a1         114 ALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY  175 (175)
T ss_dssp             EEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             eeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEeC
Confidence            99999999999998764444  44577888887654 46799999999997 4 7799887763

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=5.9e-25  Score=184.03  Aligned_cols=147  Identities=20%  Similarity=0.345  Sum_probs=123.5

Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~  252 (385)
                      +++++||++++++.|||+++ +.++++++++|||+|+ |++|++++|+||.+|+ +|+++++++++.+.++++|+++++|
T Consensus         1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence            57899999999999999987 4589999999999996 9999999999999999 8999999999999999999999998


Q ss_pred             CCCCCchhHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCC
Q 016660          253 SKNCGDKSIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  331 (385)
Q Consensus       253 ~~~~~~~~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  331 (385)
                      +.+     ...+.+.+ |+|+|||++| +. ++.++++++++ |+++.+|... ....+++...++.|++++.|+++..+
T Consensus        79 ~~~-----~~~~~~~~~g~D~v~d~~G-~~-~~~~~~~l~~~-G~~v~~G~~~-g~~~~~~~~~~~~k~~~i~g~~~~~~  149 (171)
T d1iz0a2          79 YAE-----VPERAKAWGGLDLVLEVRG-KE-VEESLGLLAHG-GRLVYIGAAE-GEVAPIPPLRLMRRNLAVLGFWLTPL  149 (171)
T ss_dssp             GGG-----HHHHHHHTTSEEEEEECSC-TT-HHHHHTTEEEE-EEEEEC--------CCCCTTHHHHTTCEEEECCHHHH
T ss_pred             hhh-----hhhhhhccccccccccccc-hh-HHHHHHHHhcC-CcEEEEeCCC-CCCCCccHHHHHHCCcEEEEEeCcCh
Confidence            865     23445556 8999999988 34 78999999997 9999999753 34567777888999999999976554

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.90  E-value=3.3e-24  Score=182.54  Aligned_cols=171  Identities=16%  Similarity=0.144  Sum_probs=136.0

Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCCCEEEEE-cC-CHHHHHHHHHHHHcCCCEEEEEcCCc----hHHHHHHHcCC
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-GL-GSIGLAVAEGARLCGATRIIGVDVIS----EKFEIGKRFGV  247 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~-G~-g~vG~~ai~la~~~G~~~vi~~~~~~----~~~~~~~~lg~  247 (385)
                      +|+++||+++++++|||+++.+..++++|++|||+ |+ |++|++++|+||.+|+ +||++.+++    ++.++++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            57899999999999999999888999999999997 55 9999999999999999 777775443    35567889999


Q ss_pred             CeEEeCCCCCchh---HHHHhh---CCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCc
Q 016660          248 TEFVNSKNCGDKS---IIIDMT---DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK  321 (385)
Q Consensus       248 ~~vv~~~~~~~~~---~i~~~~---~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  321 (385)
                      ++++++++.+..+   .+++.+   ++++|++||++|++. .+.++++++++ |++|.+|... ..+.+++...++.|++
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~-~~~~~~~l~~~-G~~v~~G~~~-~~~~~~~~~~l~~k~~  156 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNN-GLMLTYGGMS-FQPVTIPTSLYIFKNF  156 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTT-CEEEECCCCS-SCCEEECHHHHHHSCC
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcch-hhhhhhhhcCC-cEEEEECCcc-CCCccCcHHHHHHCCc
Confidence            9999886533322   244433   338999999999777 88999999997 9999999643 4567788888899999


Q ss_pred             EEEEeeecCCCC------CCcHHHHHHHHHcCC
Q 016660          322 ILMGSLFGGLKA------KSDIPILLKRYMDKE  348 (385)
Q Consensus       322 ~i~g~~~~~~~~------~~~~~~~~~~~~~g~  348 (385)
                      ++.|+++..+..      ++.+.++++++++|+
T Consensus       157 ~i~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         157 TSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             EEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            999987654321      134667777777763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=1.1e-22  Score=173.30  Aligned_cols=166  Identities=25%  Similarity=0.206  Sum_probs=138.7

Q ss_pred             ccccccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCC
Q 016660          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (385)
Q Consensus       177 ~~aa~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~  256 (385)
                      ++.++|+..+.|||+++ +.+++++|++|||+|+|++|++++++|+.+|+.+|++++.+++|+++++++|+++++++.+.
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~   80 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDT   80 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSS
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCc
Confidence            45677888999999986 67899999999999999999999999999999999999999999999999999999999887


Q ss_pred             CchhHHHHhhCC-CccEEEEccCC---------------hHHHHHHHHHhccCCceEEEeccCCCCCc-----------c
Q 016660          257 GDKSIIIDMTDG-GADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGVDQPGSQ-----------L  309 (385)
Q Consensus       257 ~~~~~i~~~~~g-~~d~vid~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-----------~  309 (385)
                      +..+.+.+++++ ++|++||++|.               ..+++.++++++++ |+++.+|...+..+           +
T Consensus        81 ~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g-G~v~~~G~~~~~~~~~~~~~~~~~~~  159 (195)
T d1kola2          81 PLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSL  159 (195)
T ss_dssp             CHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSCCCSCCTTCSSHHHHTTCC
T ss_pred             CHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC-CEEEEeeecCCCcccchhhhhhcCce
Confidence            777778999988 99999999994               46799999999997 99999997653322           2


Q ss_pred             cccHHHHhhcCcEEEEeeecCCCCCCcHHHHHHHHHcC
Q 016660          310 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK  347 (385)
Q Consensus       310 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g  347 (385)
                      ++++..++.|++++.+..   ..-++.++++++++.++
T Consensus       160 ~~~~~~~~~k~~~i~~g~---~~v~~~~~~Ll~~I~~~  194 (195)
T d1kola2         160 SIRFGLGWAKSHSFHTGQ---TPVMKYNRALMQAIMWD  194 (195)
T ss_dssp             CCCHHHHHHTTCEEEESS---CCHHHHHHHHHHHHHTT
T ss_pred             eeeHHHHHhhcceeccCC---CchHHHHHHHHHHHHcC
Confidence            455556677888876432   22235577888888765

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=3.1e-23  Score=176.07  Aligned_cols=172  Identities=16%  Similarity=0.151  Sum_probs=130.3

Q ss_pred             CCcccccccccchhhhhhhhhhhccCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH-HHHHcCCCe
Q 016660          174 VPPNRACLLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTE  249 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~~~~~~~~~--~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~~  249 (385)
                      +|+...| ++++..|||+++.+..+++++  ++|||+|+ |++|++++|+||.+|+++|+++.+++++.. +.+++|+++
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            4555644 677899999999999899887  89999986 999999999999999977887766665544 566899999


Q ss_pred             EEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCC--------CCcccccHHHHhhcCc
Q 016660          250 FVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP--------GSQLSLSSFEVLHSGK  321 (385)
Q Consensus       250 vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~--------~~~~~~~~~~~~~~~~  321 (385)
                      ++|+++++..+.+++.++.|+|+|||++|++. ++.++++++++ |+++.+|....        ..........+..|++
T Consensus        81 vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg~~-~~~~~~~l~~~-G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i  158 (187)
T d1vj1a2          81 AVNYKTGNVAEQLREACPGGVDVYFDNVGGDI-SNTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNI  158 (187)
T ss_dssp             EEETTSSCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEE-EEEEEC------------CCCCCHHHHHHHHHTTC
T ss_pred             EeeccchhHHHHHHHHhccCceEEEecCCchh-HHHHhhhcccc-ccEEEeccccccccccccCCchHHHHHHHHHhcce
Confidence            99999988887788887669999999999766 99999999997 99999986321        0111112233566899


Q ss_pred             EEEEeeecCCCC--CCcHHHHHHHHHcCC
Q 016660          322 ILMGSLFGGLKA--KSDIPILLKRYMDKE  348 (385)
Q Consensus       322 ~i~g~~~~~~~~--~~~~~~~~~~~~~g~  348 (385)
                      ++.|+.+..+..  .+.++++.+++++|+
T Consensus       159 ~~~g~~~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         159 TRERFTVLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             EEEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             EEEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence            999986655432  223566667777763

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3e-22  Score=167.55  Aligned_cols=149  Identities=14%  Similarity=0.145  Sum_probs=124.8

Q ss_pred             CCcccccccccchhhhhhhhh---hhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe
Q 016660          174 VPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~---~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~  249 (385)
                      +++.+||.++++..|||++++   +.....++++|||+|+ |++|.+++|+||.+|+ +||++.+++++.+.++++|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            578899999999999998753   3344556679999987 9999999999999999 8999989999999999999999


Q ss_pred             EEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeec
Q 016660          250 FVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  329 (385)
Q Consensus       250 vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  329 (385)
                      ++|+++.++.   +.+.+..+|.++|++|++. +..++++++++ |+++.+|... ....+++...++.|++++.|++..
T Consensus        80 vi~~~~~~~~---~~l~~~~~~~vvD~Vgg~~-~~~~l~~l~~~-Griv~~G~~~-~~~~~~~~~~~~~k~~~i~G~~~~  153 (177)
T d1o89a2          80 VLPRDEFAES---RPLEKQVWAGAIDTVGDKV-LAKVLAQMNYG-GCVAACGLAG-GFTLPTTVMPFILRNVRLQGVDSV  153 (177)
T ss_dssp             EEEGGGSSSC---CSSCCCCEEEEEESSCHHH-HHHHHHTEEEE-EEEEECCCTT-CSCCCCCSHHHHHHCCEEEECCSS
T ss_pred             ccccccHHHH---HHHHhhcCCeeEEEcchHH-HHHHHHHhccc-cceEeecccC-CccccccHHHHHHCCCeEEEEecc
Confidence            9999874443   2333346899999999877 99999999997 9999999764 445677788889999999997543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1e-21  Score=162.73  Aligned_cols=153  Identities=14%  Similarity=0.122  Sum_probs=120.4

Q ss_pred             chhhhhhh---hhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchh
Q 016660          185 GVSTGVGA---AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS  260 (385)
Q Consensus       185 ~~~ta~~a---l~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~  260 (385)
                      +..|||.+   |.+....+++++|||+|+ |++|.+++|+||++|+ +||++.++++|.++++++|+++++++++.. .+
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~~~-~~   81 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISREDVY-DG   81 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHHHC-SS
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccchh-ch
Confidence            45567644   555566778889999986 9999999999999999 899999999999999999999999876522 22


Q ss_pred             HHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEeeecCCCCCCcHHH
Q 016660          261 IIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPI  339 (385)
Q Consensus       261 ~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  339 (385)
                       ....+.+ ++|+|||++|++. ++.++++++++ |+++.+|... ....+++...++.|++++.|..... ...+....
T Consensus        82 -~~~~~~~~gvd~vid~vgg~~-~~~~~~~l~~~-G~iv~~G~~~-g~~~~~~~~~l~~k~~~i~G~~~~~-~~~~~~~~  156 (167)
T d1tt7a2          82 -TLKALSKQQWQGAVDPVGGKQ-LASLLSKIQYG-GSVAVSGLTG-GGEVPATVYPFILRGVSLLGIDSVY-CPMDVRAA  156 (167)
T ss_dssp             -CCCSSCCCCEEEEEESCCTHH-HHHHHTTEEEE-EEEEECCCSS-CSCEEECSHHHHTSCCEEEECCSSS-CCHHHHHH
T ss_pred             -hhhcccCCCceEEEecCcHHH-HHHHHHHhccC-ceEEEeeccC-CCcccCCHHHHHHCCcEEEEEecCC-CCHHHHHH
Confidence             2333444 8999999999888 99999999997 9999999864 4567888889999999999974322 11234444


Q ss_pred             HHHHH
Q 016660          340 LLKRY  344 (385)
Q Consensus       340 ~~~~~  344 (385)
                      +.+.+
T Consensus       157 ~~~~l  161 (167)
T d1tt7a2         157 VWERM  161 (167)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            55544

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.63  E-value=3.6e-15  Score=119.63  Aligned_cols=133  Identities=14%  Similarity=0.121  Sum_probs=99.2

Q ss_pred             eeeeEEEeccC--CCC----cEEEEeecCCCCCCeEEEEEeeeecccccccccccCCCCCCCCccccCceeEEEEEeCCC
Q 016660           15 IQCRAAIATAP--GEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (385)
Q Consensus        15 ~~~~a~~~~~~--~~~----l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~   88 (385)
                      ++.|+|++.+.  |.|    +++.+.++|+|++||||||++|.++++........    .....++..+++|+|++  |+
T Consensus         2 ~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~----~~~g~~~~g~~vg~Vv~--S~   75 (147)
T d1v3va1           2 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKR----LKEGAVMMGQQVARVVE--SK   75 (147)
T ss_dssp             CEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGGG----SCTTSBCCCCEEEEEEE--ES
T ss_pred             cccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEcccccccccc----cccCCccccceEEEEEE--eC
Confidence            46889998875  444    89999999999999999999999998865443321    12223455688999988  67


Q ss_pred             CCCCCCCCEEEecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccCCceeeccccccceeeeEeeccCceE
Q 016660           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (385)
Q Consensus        89 v~~~~~GdrV~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~  168 (385)
                      .++|++||+|...                                                    ++|+||.+++.+.+.
T Consensus        76 ~~~f~~GD~V~g~----------------------------------------------------~gw~ey~v~~~~~l~  103 (147)
T d1v3va1          76 NSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKGLE  103 (147)
T ss_dssp             CTTSCTTCEEEEC----------------------------------------------------CCSBSEEEECSSSCE
T ss_pred             CCcccCCCEEEEc----------------------------------------------------cCCEeEEEeccceee
Confidence            7889999999622                                                    289999999999999


Q ss_pred             ECCCCCCc-----ccccccccchhhh-hhhhhhhccCCCCCEEEE
Q 016660          169 KVDPTVPP-----NRACLLSCGVSTG-VGAAWRTANVEVGSTVVI  207 (385)
Q Consensus       169 ~iP~~l~~-----~~aa~l~~~~~ta-~~al~~~~~~~~~~~VlI  207 (385)
                      ++|+.++.     ...+++....+|| |..+.  ...+.|++||+
T Consensus       104 kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~--~~~k~Getvv~  146 (147)
T d1v3va1         104 KLLTEWPDKKIQYHEHVTKGFENMPAAFIEML--NGANLGKAVVT  146 (147)
T ss_dssp             ECCTTCCTTSSCCCEEEEECGGGHHHHHHHHH--TTCCSSEEEEE
T ss_pred             EccccccccccchhhhHhccccchHHHHHHhh--CCCCCCCEEEe
Confidence            99876543     3445566666775 43443  34567999986

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.4e-14  Score=101.89  Aligned_cols=73  Identities=15%  Similarity=0.192  Sum_probs=65.7

Q ss_pred             CCcccccccccchhhhhhhhh---hhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC
Q 016660          174 VPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (385)
Q Consensus       174 l~~~~aa~l~~~~~ta~~al~---~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~  247 (385)
                      +|+++|+.+++++.|||.+++   +....+++++|||+|+ |++|.+++|++|.+|+ +|+++.+++++.++++++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            578999999999999998754   4456789999999987 9999999999999999 89999999999999999985

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.78  E-value=3.5e-05  Score=61.12  Aligned_cols=100  Identities=22%  Similarity=0.160  Sum_probs=72.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      +..+|+|+|+|.+|+.|++.|+.+|+ .|.+.|.+.++++.+++.....+.....  ....+.+... ..|+||-++=-+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~--~~~~l~~~~~-~aDivI~aalip  106 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYS--NSAEIETAVA-EADLLIGAVLVP  106 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEEC--CHHHHHHHHH-TCSEEEECCCCT
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehh--hhhhHHHhhc-cCcEEEEeeecC
Confidence            56889999999999999999999999 9999999999999888765432211111  1112333222 489999977422


Q ss_pred             -----HH-HHHHHHHhccCCceEEEeccCCC
Q 016660          281 -----SL-VQEAYACCRKGWGKTIVLGVDQP  305 (385)
Q Consensus       281 -----~~-~~~~~~~l~~~~G~~v~~g~~~~  305 (385)
                           .. -++.++.|+++ +.+|.++...+
T Consensus       107 G~~aP~lIt~~mv~~Mk~G-SVIVDvaidqG  136 (168)
T d1pjca1         107 GRRAPILVPASLVEQMRTG-SVIVDVAVDQG  136 (168)
T ss_dssp             TSSCCCCBCHHHHTTSCTT-CEEEETTCTTC
T ss_pred             CcccCeeecHHHHhhcCCC-cEEEEeecCCC
Confidence                 11 26899999997 99999887543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.64  E-value=0.00015  Score=58.26  Aligned_cols=101  Identities=19%  Similarity=0.251  Sum_probs=73.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeC-CCCC-------------------chh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS-KNCG-------------------DKS  260 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~-~~~~-------------------~~~  260 (385)
                      +..+|+|+|+|.+|+.|++.|+.+|+ .|.+.|.+.++++.+++++...+... ....                   ..+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            45789999999999999999999999 99999999999999999987654210 0000                   001


Q ss_pred             HHHHhhCCCccEEEEccCCh-----H-HHHHHHHHhccCCceEEEeccCC
Q 016660          261 IIIDMTDGGADYCFECVGLA-----S-LVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       261 ~i~~~~~g~~d~vid~~g~~-----~-~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      .+.+... ..|+||-++=-+     . .-++.++.|++| +.+|.++...
T Consensus       107 ~l~~~l~-~aDlVI~talipG~~aP~lit~~mv~~Mk~G-SVIVDvaidq  154 (183)
T d1l7da1         107 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEA  154 (183)
T ss_dssp             HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGG
T ss_pred             HHHHHHH-hhhhheeeeecCCcccceeehHHHHHhcCCC-cEEEEEeecC
Confidence            1222222 589999866321     1 136899999997 9999988654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.64  E-value=3.2e-05  Score=64.75  Aligned_cols=111  Identities=20%  Similarity=0.248  Sum_probs=77.3

Q ss_pred             ccccchhhhhhhhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeEEeCCCC
Q 016660          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNC  256 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~  256 (385)
                      .++.+...|.  +.+.++++++++||.+|+|. |..++.+++..|. +|++++.+++-.+.+    +++|.+.+......
T Consensus        60 ~is~P~~~a~--ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd  135 (215)
T d1jg1a_          60 TVSAPHMVAI--MLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILGD  135 (215)
T ss_dssp             EECCHHHHHH--HHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             hhhhhhhHHH--HHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeEEEECc
Confidence            4444544443  55778999999999999876 8888899998885 799999887755544    45777654322220


Q ss_pred             CchhHHHHhh-CCCccEEEEccCChHHHHHHHHHhccCCceEEEe
Q 016660          257 GDKSIIIDMT-DGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       257 ~~~~~i~~~~-~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      ..    ..+. .+.||.++-..+....-...++.|++| |++|..
T Consensus       136 ~~----~g~~~~~pfD~Iiv~~a~~~ip~~l~~qL~~g-GrLv~p  175 (215)
T d1jg1a_         136 GS----KGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIP  175 (215)
T ss_dssp             GG----GCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             cc----cCCcccCcceeEEeecccccCCHHHHHhcCCC-CEEEEE
Confidence            11    1111 237999987776665457889999997 999864

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.63  E-value=0.00013  Score=57.88  Aligned_cols=78  Identities=18%  Similarity=0.253  Sum_probs=58.6

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCCCccEE
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYC  273 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~v  273 (385)
                      +...--.+.+|||+|+|.+|.+.++.+...|++.+.++.++.+|.+ +++++|.. +.++.+      +.... ..+|+|
T Consensus        17 ~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~~~------~~~~l-~~~Div   88 (159)
T d1gpja2          17 RELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRFDE------LVDHL-ARSDVV   88 (159)
T ss_dssp             HHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCGGG------HHHHH-HTCSEE
T ss_pred             HHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc-cccchh------HHHHh-ccCCEE
Confidence            3334457889999999999999999999999988999999977765 67778853 333333      22221 159999


Q ss_pred             EEccCCh
Q 016660          274 FECVGLA  280 (385)
Q Consensus       274 id~~g~~  280 (385)
                      |.|++.+
T Consensus        89 i~atss~   95 (159)
T d1gpja2          89 VSATAAP   95 (159)
T ss_dssp             EECCSSS
T ss_pred             EEecCCC
Confidence            9999875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.59  E-value=0.00013  Score=58.46  Aligned_cols=74  Identities=15%  Similarity=0.145  Sum_probs=56.3

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEEeCCCCCchhHHHHhhCCCcc
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSIIIDMTDGGAD  271 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv~~~~~~~~~~i~~~~~g~~d  271 (385)
                      +.+..++.++.+|||+|+|+.+.+++..++..|+++|.++.++.++.+.+. .++...+ +...           ...+|
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~-~~~~-----------~~~~D   75 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYI-NSLE-----------NQQAD   75 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEE-SCCT-----------TCCCS
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhh-hccc-----------ccchh
Confidence            345566778899999999999999999999999988999999998877654 4554332 2211           12589


Q ss_pred             EEEEccC
Q 016660          272 YCFECVG  278 (385)
Q Consensus       272 ~vid~~g  278 (385)
                      ++|+|++
T Consensus        76 liINaTp   82 (167)
T d1npya1          76 ILVNVTS   82 (167)
T ss_dssp             EEEECSS
T ss_pred             hheeccc
Confidence            9999876

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00064  Score=58.01  Aligned_cols=101  Identities=21%  Similarity=0.204  Sum_probs=67.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-eE--EeCCCCCchhH-HHHhhC--CCccEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EF--VNSKNCGDKSI-IIDMTD--GGADYC  273 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~v--v~~~~~~~~~~-i~~~~~--g~~d~v  273 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+.... ..  .|..+...... +.....  |+.|++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil   83 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV   83 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            6889999987 9999999999999999 899999999888776654333 22  23333111111 222222  469999


Q ss_pred             EEccCCh--------------------------HHHHHHHHHhccCCceEEEecc
Q 016660          274 FECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       274 id~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ++++|..                          ...+.+++.|++++|+++.++.
T Consensus        84 VnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS  138 (250)
T d1ydea1          84 VNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISS  138 (250)
T ss_dssp             EECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             EecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCccccc
Confidence            9988741                          1234455666554489988874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.47  E-value=2.2e-05  Score=65.86  Aligned_cols=101  Identities=22%  Similarity=0.308  Sum_probs=72.0

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHH----cCCCeEEe-CCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR----FGVTEFVN-SKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~----lg~~~vv~-~~~~~~~~~i~~~~  266 (385)
                      +.+.+++++|++||-+|+|. |..++.+|+..|.. +|++++.+++..+.+++    .+...+.- ..+  ...  ....
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d--~~~--~~~~  141 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGD--GYY--GVPE  141 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC--GGG--CCGG
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCc--hHH--cccc
Confidence            55778899999999999877 88888999987632 89999999988777664    44443321 111  100  0011


Q ss_pred             CCCccEEEEccCChHHHHHHHHHhccCCceEEE
Q 016660          267 DGGADYCFECVGLASLVQEAYACCRKGWGKTIV  299 (385)
Q Consensus       267 ~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~  299 (385)
                      .+.||+|+...+-....+..++.|+++ |+++.
T Consensus       142 ~~~fD~I~~~~~~~~~p~~l~~~LkpG-G~lv~  173 (213)
T d1dl5a1         142 FSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIV  173 (213)
T ss_dssp             GCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEE
T ss_pred             ccchhhhhhhccHHHhHHHHHHhcCCC-cEEEE
Confidence            236999998777665457788999997 99876

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.41  E-value=0.0011  Score=56.68  Aligned_cols=102  Identities=15%  Similarity=0.166  Sum_probs=69.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCeEEeCCCCCchhH----HHHhhC--CCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSI----IIDMTD--GGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~----i~~~~~--g~~d~  272 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++.+. .++++...++-.-+......    +.....  |++|+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence            6788999987 9999999999999999 89999999887664 45677654432223222222    222111  47999


Q ss_pred             EEEccCCh-------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          273 CFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       273 vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +++++|..                         ...+.++..|+..+|+++.++..
T Consensus        84 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~  139 (253)
T d1hxha_          84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASV  139 (253)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCG
T ss_pred             EEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccch
Confidence            99999852                         12345666776544999988764

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.38  E-value=0.00077  Score=57.43  Aligned_cols=104  Identities=24%  Similarity=0.244  Sum_probs=72.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhH-HHHhhC--CCccEEE
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSI-IIDMTD--GGADYCF  274 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~-i~~~~~--g~~d~vi  274 (385)
                      -+|.++||.|+ +++|...++.+...|+ +|+.+++++++.+.+++.+...+ .|..+...... +.+...  |+.|+++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            46899999987 9999999999999999 89999999999888888886533 33333211111 222222  4799999


Q ss_pred             EccCCh-------------------------HHHHHHHHHhcc-CCceEEEeccCC
Q 016660          275 ECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGVDQ  304 (385)
Q Consensus       275 d~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~~  304 (385)
                      +++|..                         ...+.+++.|++ ++|++|.++...
T Consensus        82 nnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~  137 (248)
T d2d1ya1          82 NNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQ  137 (248)
T ss_dssp             ECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred             EeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccc
Confidence            988751                         123445566644 238899887543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.38  E-value=0.00025  Score=60.50  Aligned_cols=101  Identities=13%  Similarity=0.087  Sum_probs=69.4

Q ss_pred             hhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHH----cC-CCeEEeCCCCCchhHHHHhhC
Q 016660          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR----FG-VTEFVNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       194 ~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~----lg-~~~vv~~~~~~~~~~i~~~~~  267 (385)
                      ...+++++|++||=.|+|. |.+++.+|+..|.. +|++++.+++..+.+++    ++ ...+-.... +.    .+...
T Consensus        78 i~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~-Di----~~~~~  151 (250)
T d1yb2a1          78 IMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS-DI----ADFIS  151 (250)
T ss_dssp             ---CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS-CT----TTCCC
T ss_pred             HHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEe-ee----ecccc
Confidence            3567899999999999876 77888888877533 89999999998887764    22 233211111 11    22223


Q ss_pred             C-CccEEE-EccCChHHHHHHHHHhccCCceEEEec
Q 016660          268 G-GADYCF-ECVGLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       268 g-~~d~vi-d~~g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      + .||.|| |.......++.+.+.|++| |+++++.
T Consensus       152 ~~~fD~V~ld~p~p~~~l~~~~~~LKpG-G~lv~~~  186 (250)
T d1yb2a1         152 DQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYL  186 (250)
T ss_dssp             SCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEE
T ss_pred             cceeeeeeecCCchHHHHHHHHHhcCCC-ceEEEEe
Confidence            3 799886 5444445689999999997 9998874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.37  E-value=0.00018  Score=60.34  Aligned_cols=98  Identities=14%  Similarity=0.268  Sum_probs=69.4

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC--C--eEEeCCCCCchhHHHHhh-C
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--T--EFVNSKNCGDKSIIIDMT-D  267 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--~--~vv~~~~~~~~~~i~~~~-~  267 (385)
                      +.+...++++++||-+|+|. |..++.+++..+  +|++++.+++..+.+++.-.  .  .++..+.   .   ..+. .
T Consensus        62 ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~---~---~g~~~~  132 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYYNNIKLILGDG---T---LGYEEE  132 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG---G---GCCGGG
T ss_pred             HHHHhhhcccceEEEecCCC-CHHHHHHHHHhc--ccccccccHHHHHHHHHHHhcccccccccCch---h---hcchhh
Confidence            45677899999999999875 788888888753  89999999988887776321  1  2222111   0   0111 2


Q ss_pred             CCccEEEEccCChHHHHHHHHHhccCCceEEEe
Q 016660          268 GGADYCFECVGLASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       268 g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      +.||.|+-..+.+......+++|++| |++|..
T Consensus       133 ~pfD~Iiv~~a~~~ip~~l~~qLk~G-GrLV~p  164 (224)
T d1vbfa_         133 KPYDRVVVWATAPTLLCKPYEQLKEG-GIMILP  164 (224)
T ss_dssp             CCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             hhHHHHHhhcchhhhhHHHHHhcCCC-CEEEEE
Confidence            36999987666666567788999997 998875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00029  Score=59.14  Aligned_cols=110  Identities=20%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             cccchhhhhhhhhhhc--cCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHH----cCC-----Ce
Q 016660          182 LSCGVSTGVGAAWRTA--NVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR----FGV-----TE  249 (385)
Q Consensus       182 l~~~~~ta~~al~~~~--~~~~~~~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~----lg~-----~~  249 (385)
                      +..+...|.  +.+..  .+++|++||-+|+|. |..++.+|+..|.. +|++++.+++-.+.+++    .+.     ..
T Consensus        57 is~P~~~a~--~le~L~~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~  133 (224)
T d1i1na_          57 ISAPHMHAY--ALELLFDQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR  133 (224)
T ss_dssp             ECCHHHHHH--HHHHTTTTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSS
T ss_pred             hhhhHHHHH--HHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccc
Confidence            333444443  33433  789999999999876 88888999987633 89999999887776543    221     11


Q ss_pred             E-EeCCCCCchhHHHHhh-CCCccEEEEccCChHHHHHHHHHhccCCceEEEe
Q 016660          250 F-VNSKNCGDKSIIIDMT-DGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       250 v-v~~~~~~~~~~i~~~~-~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      + +-..+  ..   .... .+.||.|+-........+..++.|++| |++|..
T Consensus       134 ~~~~~gD--~~---~~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpG-G~LV~p  180 (224)
T d1i1na_         134 VQLVVGD--GR---MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILP  180 (224)
T ss_dssp             EEEEESC--GG---GCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             eEEEEee--cc---cccchhhhhhhhhhhcchhhcCHHHHhhcCCC-cEEEEE
Confidence            1 11111  00   0111 236999998777666567889999997 999874

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00094  Score=56.71  Aligned_cols=76  Identities=16%  Similarity=0.175  Sum_probs=56.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeE--EeCCCCCchhHHHHhhCC--CccEE
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF--VNSKNCGDKSIIIDMTDG--GADYC  273 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~v--v~~~~~~~~~~i~~~~~g--~~d~v  273 (385)
                      -+|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+ ++++....  +|..+   ...+.+....  ++|++
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~g~iDil   80 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD---WEATERALGSVGPVDLL   80 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTTCCCCCEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHHhCCceEE
Confidence            37899999987 9999999999999999 899999998887654 44543332  33333   3334444444  69999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      ++++|.
T Consensus        81 VnnAg~   86 (244)
T d1pr9a_          81 VNNAAV   86 (244)
T ss_dssp             EECCCC
T ss_pred             Eecccc
Confidence            998875

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.001  Score=56.44  Aligned_cols=75  Identities=17%  Similarity=0.175  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeE--EeCCCCCchhHHHHhhCC--CccEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF--VNSKNCGDKSIIIDMTDG--GADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~v--v~~~~~~~~~~i~~~~~g--~~d~vi  274 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+ ++++....  +|..+   ...+.+....  ++|+++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~g~iDilV   79 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD---WDATEKALGGIGPVDLLV   79 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTTCCCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHHcCCCeEEE
Confidence            5889999987 9999999999999999 899999988876654 34443222  23333   3334554444  699999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      +++|.
T Consensus        80 nnAg~   84 (242)
T d1cyda_          80 NNAAL   84 (242)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99875

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.002  Score=54.57  Aligned_cols=168  Identities=17%  Similarity=0.168  Sum_probs=95.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCe---EEeCCCCCchhH-HHHhh--CCCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE---FVNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vv~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+ ++++...   ..|..+...... +....  -|+.|+
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDI   81 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCcce
Confidence            5788999987 9999999999999999 899999998887654 4455432   234333222112 22222  247999


Q ss_pred             EEEccCCh-------------------------HHHHHHHHHhcc-CCceEEEeccCCCCCccc-ccH------------
Q 016660          273 CFECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGVDQPGSQLS-LSS------------  313 (385)
Q Consensus       273 vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~~~~~~~~-~~~------------  313 (385)
                      +++++|..                         ...+.+++.|.+ ++|+++.++........+ ...            
T Consensus        82 lVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~lt  161 (243)
T d1q7ba_          82 LVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFS  161 (243)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHH
T ss_pred             ehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCCCHHHHHHHHHHHHHH
Confidence            99988752                         223445566532 238999887532110000 000            


Q ss_pred             ----HHHhhcCcEEEEeeecCCCC---CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcC
Q 016660          314 ----FEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG  374 (385)
Q Consensus       314 ----~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~  374 (385)
                          ..+-.+++++....-+...+   +....+..+.+.+. ++..    +...-+|+.++..+|.+.
T Consensus       162 ~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~-~pl~----R~~~pedvA~~v~fL~S~  224 (243)
T d1q7ba_         162 KSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQ-VPAG----RLGGAQEIANAVAFLASD  224 (243)
T ss_dssp             HHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTT-CTTS----SCBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHhCccCeEEEEEecceEechhhhhhhhhHHHHHHhc-CCCC----CCCCHHHHHHHHHHHhCc
Confidence                12334567776665443321   11122222333222 2232    233567899998888654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.11  E-value=0.0035  Score=47.47  Aligned_cols=75  Identities=17%  Similarity=0.262  Sum_probs=55.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +|+|.|.|.+|...++.+...|. .|++++.++++.+.+.+ ++.. ++..+. .....+.+..-..+|.++-+++..+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~-vi~Gd~-~~~~~l~~~~i~~a~~vv~~t~~d~   77 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL-VINGDC-TKIKTLEDAGIEDADMYIAVTGKEE   77 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE-EEESCT-TSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhh-hccCcc-cchhhhhhcChhhhhhhcccCCcHH
Confidence            58999999999999999999999 89999999999887754 5654 443333 2333233332237899999888876

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.0012  Score=52.59  Aligned_cols=82  Identities=11%  Similarity=0.073  Sum_probs=54.6

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCCCchhHHHHhhCCCcc
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSIIIDMTDGGAD  271 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~~~~~~i~~~~~g~~d  271 (385)
                      |.+..-..++.+|||+|+|+.+.+++..+...|+ +|+.+.++.+|.+.+.+ +.....+....  +.    ......+|
T Consensus         9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~~~~~~~--~~----~~~~~~~d   81 (170)
T d1nyta1           9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALS--MD----ELEGHEFD   81 (170)
T ss_dssp             HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECC--SG----GGTTCCCS
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhcccccccc--cc----cccccccc
Confidence            4333334678999999999999999999999999 79999999888775543 32211111111  11    11122689


Q ss_pred             EEEEccCChH
Q 016660          272 YCFECVGLAS  281 (385)
Q Consensus       272 ~vid~~g~~~  281 (385)
                      ++|+|+....
T Consensus        82 liIN~Tp~G~   91 (170)
T d1nyta1          82 LIINATSSGI   91 (170)
T ss_dssp             EEEECCSCGG
T ss_pred             eeecccccCc
Confidence            9999987543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.07  E-value=0.0026  Score=50.56  Aligned_cols=98  Identities=9%  Similarity=-0.004  Sum_probs=65.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .+.+|||+|+|.+|..+++.+...|+ .|++++++.++.+.+.+-..................... ...|.++.+.+..
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~i~~~~~~   78 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEV-AKHDLVISLIPYT   78 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHH-TTSSEEEECSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhcccccccccccccchhhhHhhh-hccceeEeeccch
Confidence            36789999999999999999998899 899999999998876653332222222212222222222 2578888888776


Q ss_pred             HHHHHHHHHhccCCceEEEec
Q 016660          281 SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       281 ~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ........++..+ ..++...
T Consensus        79 ~~~~~~~~~~~~~-~~~~~~~   98 (182)
T d1e5qa1          79 FHATVIKSAIRQK-KHVVTTS   98 (182)
T ss_dssp             GHHHHHHHHHHHT-CEEECSS
T ss_pred             hhhHHHHHHHhhc-cceeecc
Confidence            6555566666664 6666554

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.05  E-value=0.0018  Score=52.58  Aligned_cols=76  Identities=17%  Similarity=0.237  Sum_probs=55.2

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-----cCC-CeEEeCCCCCchhHHHHhhCCCcc
Q 016660          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGV-TEFVNSKNCGDKSIIIDMTDGGAD  271 (385)
Q Consensus       199 ~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-----lg~-~~vv~~~~~~~~~~i~~~~~g~~d  271 (385)
                      --+|.++||+|+ |++|..+++.+...|+ +|+.++++.++.+.+.+     ... ....|..+   ...+.+.. +++|
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~-~~iD   94 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD---DASRAEAV-KGAH   94 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS---HHHHHHHT-TTCS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhccc---HHHHHHHh-cCcC
Confidence            458999999997 9999999999999999 89999999888765543     222 22344333   22344443 4699


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++|++.|.
T Consensus        95 ilin~Ag~  102 (191)
T d1luaa1          95 FVFTAGAI  102 (191)
T ss_dssp             EEEECCCT
T ss_pred             eeeecCcc
Confidence            99999874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.0017  Score=55.74  Aligned_cols=101  Identities=19%  Similarity=0.308  Sum_probs=73.3

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHH----cCCC-eE-EeCCCCCchhHHHHh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR----FGVT-EF-VNSKNCGDKSIIIDM  265 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~----lg~~-~v-v~~~~~~~~~~i~~~  265 (385)
                      +...+++++|++||=.|+|. |.+++.+|+..|.. +|++++.+++..+.+++    +|.. .+ +...+      +...
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d------~~~~  167 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD------ISEG  167 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC------GGGC
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc------cccc
Confidence            45678999999999999877 78888999987632 89999999998887764    5542 22 22222      1222


Q ss_pred             hCC-CccEEEEccCCh-HHHHHHHHHhccCCceEEEec
Q 016660          266 TDG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       266 ~~g-~~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ... .+|.||--.+.+ ..++.+.++|++| |+++.+.
T Consensus       168 ~~~~~~D~V~~d~p~p~~~l~~~~~~LKpG-G~lv~~~  204 (266)
T d1o54a_         168 FDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVC  204 (266)
T ss_dssp             CSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEE
T ss_pred             ccccceeeeEecCCCHHHHHHHHHhhcCCC-CEEEEEe
Confidence            233 688876555554 5689999999997 9998775

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.04  E-value=0.0022  Score=54.78  Aligned_cols=78  Identities=18%  Similarity=0.245  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH----HHHcCCCeE---EeCCCCCchhH----HHHhhCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFGVTEF---VNSKNCGDKSI----IIDMTDG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~----~~~lg~~~v---v~~~~~~~~~~----i~~~~~g  268 (385)
                      +|+++||.|+ +++|.+.++.+...|+ +|+.+++++++++.    +++.+....   .|..+......    +.+..++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            7899999987 9999999999999999 89999999877554    334555432   23333211111    2233344


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ..|++++++|.
T Consensus        84 ~idilinnag~   94 (258)
T d1ae1a_          84 KLNILVNNAGV   94 (258)
T ss_dssp             CCCEEEECCCC
T ss_pred             CcEEEeccccc
Confidence            68999998886

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.95  E-value=0.0049  Score=45.27  Aligned_cols=93  Identities=11%  Similarity=-0.054  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc--hHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      .+.+|||+|+|.+|..-++.+...|+ .|++++...  +...++++-... ... +.  +.+.  .+  .++++|+-+.+
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~~~i~-~~~-~~--~~~~--dl--~~~~lv~~at~   81 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANEGMLT-LVE-GP--FDET--LL--DSCWLAIAATD   81 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTTTSCE-EEE-SS--CCGG--GG--TTCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhcCCce-eec-cC--CCHH--Hh--CCCcEEeecCC
Confidence            57899999999999999999999999 777775433  222333332222 221 11  1110  11  15899999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ..+.-++.....++. |..|.+...
T Consensus        82 d~~~n~~i~~~a~~~-~ilVNv~D~  105 (113)
T d1pjqa1          82 DDTVNQRVSDAAESR-RIFCNVVDA  105 (113)
T ss_dssp             CHHHHHHHHHHHHHT-TCEEEETTC
T ss_pred             CHHHHHHHHHHHHHc-CCEEEeCCC
Confidence            988445777788885 999887653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0067  Score=51.62  Aligned_cols=79  Identities=24%  Similarity=0.320  Sum_probs=53.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCC-eE----EeCCCCCchhH-HHHhh--
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF----VNSKNCGDKSI-IIDMT--  266 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v----v~~~~~~~~~~-i~~~~--  266 (385)
                      -+|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+    ++.+.. .+    .|-.++..... +....  
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            46889999987 9999999999999999 899999998886654    333321 22    23333221111 22222  


Q ss_pred             CCCccEEEEccCC
Q 016660          267 DGGADYCFECVGL  279 (385)
Q Consensus       267 ~g~~d~vid~~g~  279 (385)
                      -|++|++|+++|.
T Consensus        87 ~g~iD~lVnnAg~   99 (257)
T d1xg5a_          87 HSGVDICINNAGL   99 (257)
T ss_dssp             HCCCSEEEECCCC
T ss_pred             cCCCCEEEecccc
Confidence            2479999999886

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.90  E-value=0.0018  Score=55.33  Aligned_cols=78  Identities=24%  Similarity=0.280  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH-HHHHcCCCeEE---eCCCCCchhH-HHHhhC--CCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFV---NSKNCGDKSI-IIDMTD--GGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~~vv---~~~~~~~~~~-i~~~~~--g~~d~  272 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++.+ ..+++|.....   |..+...... +.....  |++|+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi   82 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDI   82 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            5788999987 9999999999999999 8999999887766 45567765332   3333211111 222211  47999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +++++|.
T Consensus        83 lVnnAg~   89 (256)
T d1k2wa_          83 LVNNAAL   89 (256)
T ss_dssp             EEECCCC
T ss_pred             EEeeccc
Confidence            9999885

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.90  E-value=0.0022  Score=54.29  Aligned_cols=79  Identities=13%  Similarity=0.162  Sum_probs=54.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeE---EeCCCCCchhH-HHHhhC--CCcc
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF---VNSKNCGDKSI-IIDMTD--GGAD  271 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~v---v~~~~~~~~~~-i~~~~~--g~~d  271 (385)
                      -+|.++||.|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++....   .|..+...... +.+...  +++|
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLH   82 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCe
Confidence            46889999987 9999999999999999 899999998887654 45554322   23333211111 222222  3699


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++++++|.
T Consensus        83 ilinnAG~   90 (244)
T d1nffa_          83 VLVNNAGI   90 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999886

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.88  E-value=0.0021  Score=54.76  Aligned_cols=78  Identities=24%  Similarity=0.310  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCeE---EeCCCCCchhH-HHHhhC--CCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEF---VNSKNCGDKSI-IIDMTD--GGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~v---v~~~~~~~~~~-i~~~~~--g~~d~  272 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++.+. .++++....   .|..+...... +.....  |++|+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   82 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccE
Confidence            6889999987 9999999999999999 89999998887665 445664322   23333111111 222211  37999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +++++|.
T Consensus        83 lVnnAg~   89 (254)
T d1hdca_          83 LVNNAGI   89 (254)
T ss_dssp             EEECCCC
T ss_pred             EEecCcc
Confidence            9999875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.86  E-value=0.0037  Score=50.03  Aligned_cols=94  Identities=20%  Similarity=0.149  Sum_probs=60.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCC------chhHHHHhhCCCccEEEE
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG------DKSIIIDMTDGGADYCFE  275 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~------~~~~i~~~~~g~~d~vid  275 (385)
                      +.+|.|+|+|.+|.+.+..+...|+ .|++.++++++.+.+++.+...........      ......+.. ..+|++|-
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~aD~iii   78 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-KDADVILI   78 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-TTCSEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh-cCCCEEEE
Confidence            3689999999999999999999999 899999999999888876532221111000      000012222 25899999


Q ss_pred             ccCChH---HHHHHHHHhccCCceEE
Q 016660          276 CVGLAS---LVQEAYACCRKGWGKTI  298 (385)
Q Consensus       276 ~~g~~~---~~~~~~~~l~~~~G~~v  298 (385)
                      ++....   .++++...+.++ ..++
T Consensus        79 ~v~~~~~~~~~~~i~~~l~~~-~~iv  103 (184)
T d1bg6a2          79 VVPAIHHASIAANIASYISEG-QLII  103 (184)
T ss_dssp             CSCGGGHHHHHHHHGGGCCTT-CEEE
T ss_pred             EEchhHHHHHHHHhhhccCCC-CEEE
Confidence            998764   233344455553 4333

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.85  E-value=0.0021  Score=48.83  Aligned_cols=75  Identities=15%  Similarity=0.347  Sum_probs=55.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +++|+|.|.+|..+++.+...|. .|++++.++++.+.++..|...++ -+. .....+.+..-..+|.+|-+++...
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~-gd~-~~~~~l~~a~i~~a~~vi~~~~~~~   76 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVI-ANA-TEENELLSLGIRNFEYVIVAIGANI   76 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEE-CCT-TCTTHHHHHTGGGCSEEEECCCSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCccee-eec-ccchhhhccCCccccEEEEEcCchH
Confidence            47888999999999999999999 899999999999999888865443 222 2222233322125888888887654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.84  E-value=0.0029  Score=53.39  Aligned_cols=168  Identities=17%  Similarity=0.178  Sum_probs=96.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCeEEeCCCCCchhHHH----HhhC--CCcc
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSIII----DMTD--GGAD  271 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~i~----~~~~--g~~d  271 (385)
                      -+|.++||.|+ +++|...++-+...|+ +|+.+.+++++.+. .++++.+...-.-+....+.+.    ....  |++|
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iD   81 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLH   81 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            36889999987 9999999999999999 89999999887654 4567765332222222222222    2222  4699


Q ss_pred             EEEEccCCh-------------------------HHHHHHHHHhccCCceEEEeccCCCCCcccccH-------------
Q 016660          272 YCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS-------------  313 (385)
Q Consensus       272 ~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-------------  313 (385)
                      ++|+++|..                         ...+..+..+.++ +.++.++............             
T Consensus        82 iLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~-~~i~~~ss~a~~~~~~~~~Y~~sK~al~~lt~  160 (241)
T d2a4ka1          82 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG-GSLVLTGSVAGLGAFGLAHYAAGKLGVVGLAR  160 (241)
T ss_dssp             EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT-CEEEEECCCTTCCHHHHHHHHHCSSHHHHHHH
T ss_pred             Eeccccccccccchhhhhccccccccccccccccccccccccccccc-cceeeccccccccccCccccchhhHHHHHHHH
Confidence            999988742                         1134456677775 7776665543221111111             


Q ss_pred             ---HHHhhcCcEEEEeeecCCCC---CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcC
Q 016660          314 ---FEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG  374 (385)
Q Consensus       314 ---~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~  374 (385)
                         ..+-.+++++....-+...+   ....++..+.+.+. .+..    +...-+|+.+++.+|.+.
T Consensus       161 ~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~-~p~~----r~~~p~dva~~v~fL~S~  222 (241)
T d2a4ka1         161 TLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGA-SPLG----RAGRPEEVAQAALFLLSE  222 (241)
T ss_dssp             HHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHT-STTC----SCBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHhHhCCEEeeeccCcCCCHHHHhhhHhHHHHHHhC-CCCC----CCcCHHHHHHHHHHHhcc
Confidence               12334567766554433221   11122333333222 2222    222468999999988764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0028  Score=51.06  Aligned_cols=76  Identities=17%  Similarity=0.219  Sum_probs=51.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcC----C-CeEEeCCCCCchhHHHHhhCCCc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFG----V-TEFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg----~-~~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      -++.+|||+|+|++|.+++..+...|+++++.+.+++++.+.+.    +++    . ..+.+..+  . ..+.... ..+
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~-~~~~~~~-~~~   91 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD--Q-QAFAEAL-ASA   91 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC--H-HHHHHHH-HTC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc--c-cchhhhh-ccc
Confidence            46789999999999999999999999999999999877655432    232    1 12333333  1 1122211 158


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|+|++-
T Consensus        92 diiIN~Tp~  100 (182)
T d1vi2a1          92 DILTNGTKV  100 (182)
T ss_dssp             SEEEECSST
T ss_pred             ceeccccCC
Confidence            999999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.83  E-value=0.0034  Score=49.53  Aligned_cols=86  Identities=19%  Similarity=0.201  Sum_probs=60.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC-CeEEeCCCCCchhHHHHhhCCCccEEEEccCChH-
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS-  281 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~-  281 (385)
                      +|.|+|.|.+|...+..++..|+ +|++.++++++.+.++++|. +...+..+        ..  ...|+||-++.... 
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~~~--------~~--~~~DiIilavp~~~~   70 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLS--------LL--QTAKIIFLCTPIQLI   70 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCGG--------GG--TTCSEEEECSCHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeeecc--------cc--cccccccccCcHhhh
Confidence            48899999999998888889999 89999999999999999885 33332211        11  25899999987553 


Q ss_pred             --HHHHHHHHhccCCceEEEec
Q 016660          282 --LVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       282 --~~~~~~~~l~~~~G~~v~~g  301 (385)
                        .+++....+.++ ..++.++
T Consensus        71 ~~vl~~l~~~l~~~-~iv~~~~   91 (165)
T d2f1ka2          71 LPTLEKLIPHLSPT-AIVTDVA   91 (165)
T ss_dssp             HHHHHHHGGGSCTT-CEEEECC
T ss_pred             hhhhhhhhhhcccc-cceeecc
Confidence              233444444553 4444554

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.82  E-value=0.0041  Score=53.10  Aligned_cols=78  Identities=14%  Similarity=0.156  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeE---EeCCCCCchhH-HHH---hhCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSI-IID---MTDG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~v---v~~~~~~~~~~-i~~---~~~g  268 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+.    +.|....   .|..+...... +..   ..++
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            6889999987 9999999999999999 8999999988766432    3454332   23333111111 222   2233


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      .+|++++++|.
T Consensus        86 ~idilvnnAG~   96 (259)
T d2ae2a_          86 KLNILVNNAGI   96 (259)
T ss_dssp             CCCEEEECCCC
T ss_pred             CceEEEECCce
Confidence            69999999885

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.81  E-value=0.0034  Score=53.34  Aligned_cols=168  Identities=17%  Similarity=0.244  Sum_probs=94.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-----HHHcCCCeE---EeCCCCCchhH-HHHhhC--C
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-----GKRFGVTEF---VNSKNCGDKSI-IIDMTD--G  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-----~~~lg~~~v---v~~~~~~~~~~-i~~~~~--g  268 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++.+.     .++.|.+..   .|..+...... +.....  |
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5789999987 9999999999999999 89999998877543     234565432   23333221111 222212  3


Q ss_pred             CccEEEEccCCh-------------------------HHHHHHHHHhcc-CCceEEEeccCCC-CCccc-ccHH------
Q 016660          269 GADYCFECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGVDQP-GSQLS-LSSF------  314 (385)
Q Consensus       269 ~~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~~~-~~~~~-~~~~------  314 (385)
                      ++|++|+++|..                         ...+.+++.|.+ ++|+++.++.... ....+ ....      
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~~~~~~Y~asKaa  162 (251)
T d1vl8a_          83 KLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGG  162 (251)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSSCHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccCccccchHHHHHh
Confidence            799999998851                         223456666743 2378888864321 11111 1111      


Q ss_pred             ----------HHhhcCcEEEEeeecCCCCCC--cH---HHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcC
Q 016660          315 ----------EVLHSGKILMGSLFGGLKAKS--DI---PILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG  374 (385)
Q Consensus       315 ----------~~~~~~~~i~g~~~~~~~~~~--~~---~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~  374 (385)
                                .+-.+++++....-+...+.-  ..   .+..+.+.+. ++..    +.-.-+|+.++..+|.+.
T Consensus       163 l~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~-~pl~----R~~~pedvA~~v~fL~S~  232 (251)
T d1vl8a_         163 VASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKR-IPLG----RTGVPEDLKGVAVFLASE  232 (251)
T ss_dssp             HHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHT-CTTS----SCBCGGGGHHHHHHHHSG
T ss_pred             HHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhc-CCCC----CCCCHHHHHHHHHHHhCc
Confidence                      233467887766544332211  00   1222222221 2233    223467899998888654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.79  E-value=0.0009  Score=55.93  Aligned_cols=97  Identities=21%  Similarity=0.284  Sum_probs=62.3

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHc---CC---CEEEEEcCCchHHHHHHH---------cCCCeEE-eCCCCCchhH
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLC---GA---TRIIGVDVISEKFEIGKR---------FGVTEFV-NSKNCGDKSI  261 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~---G~---~~vi~~~~~~~~~~~~~~---------lg~~~vv-~~~~~~~~~~  261 (385)
                      .++++++||.+|+|. |..++.+++..   |.   .+|+.++..++-.+.+++         ++...+. ...+  ..  
T Consensus        77 ~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d--~~--  151 (223)
T d1r18a_          77 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD--GR--  151 (223)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC--GG--
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecc--cc--
Confidence            789999999998754 66665555544   42   279999998876665543         2222222 1112  10  


Q ss_pred             HHHhh-CCCccEEEEccCChHHHHHHHHHhccCCceEEE-ec
Q 016660          262 IIDMT-DGGADYCFECVGLASLVQEAYACCRKGWGKTIV-LG  301 (385)
Q Consensus       262 i~~~~-~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~-~g  301 (385)
                       .... .+.||.|+-..+-....+..++.|+++ |++|. ++
T Consensus       152 -~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~g-G~lV~pvg  191 (223)
T d1r18a_         152 -KGYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVPVG  191 (223)
T ss_dssp             -GCCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred             -cccccccceeeEEEEeechhchHHHHHhcCCC-cEEEEEEe
Confidence             1111 236999887776665457889999997 99986 44

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0068  Score=51.90  Aligned_cols=43  Identities=21%  Similarity=0.210  Sum_probs=38.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  243 (385)
                      -+|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVV   55 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            57899999997 9999999999999999 8999999998877654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.77  E-value=0.0039  Score=53.21  Aligned_cols=78  Identities=24%  Similarity=0.291  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeE---EeCCCCCchhH-HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSI-IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~v---v~~~~~~~~~~-i~~~~~--g~  269 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+.    +.|.+..   .|..+...... +.....  |+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            6889999987 9999999999999999 8999999988776443    3454422   23333111111 222111  47


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++++++|.
T Consensus        83 iDilVnnaG~   92 (260)
T d1zema1          83 IDFLFNNAGY   92 (260)
T ss_dssp             CCEEEECCCC
T ss_pred             CCeehhhhcc
Confidence            9999998874

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.75  E-value=0.0068  Score=52.37  Aligned_cols=99  Identities=13%  Similarity=0.104  Sum_probs=69.5

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCC-CeE-EeCCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEF-VNSKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~-~~v-v~~~~~~~~~~i~~~~  266 (385)
                      +.+.+++++|++||=+|+|- |..++.+|+..|+ +|++++.+++..+++++    .|. +.+ +...+  .     ...
T Consensus        54 ~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d--~-----~~~  124 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG--W-----EQF  124 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESC--G-----GGC
T ss_pred             HHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhh--h-----hcc
Confidence            55778999999999999865 6678889998999 99999999998887765    332 111 22222  1     112


Q ss_pred             CCCccEEEE-----ccCC---hHHHHHHHHHhccCCceEEEec
Q 016660          267 DGGADYCFE-----CVGL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       267 ~g~~d~vid-----~~g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ++.||.|+.     -++.   ...++.+.+.|+++ |++++..
T Consensus       125 ~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg-G~~~l~~  166 (285)
T d1kpga_         125 DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHT  166 (285)
T ss_dssp             CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             cccccceeeehhhhhcCchhHHHHHHHHHhhcCCC-CcEEEEE
Confidence            346887764     3333   24578899999997 9988644

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.74  E-value=0.0056  Score=51.34  Aligned_cols=96  Identities=14%  Similarity=0.147  Sum_probs=62.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhH-------HHHhhCC-Ccc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSI-------IIDMTDG-GAD  271 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~-------i~~~~~g-~~d  271 (385)
                      +|.+|||.|+ +++|...++.+...|+ +|+.++..+....      ........+......       +...... ++|
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD   73 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA------SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD   73 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS------SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccc------cccceeecccCcHHHHHHHHHHHHHHhCCCCce
Confidence            4789999997 9999999999999999 8998877654321      111111111111111       2233333 699


Q ss_pred             EEEEccCCh--------------------------HHHHHHHHHhccCCceEEEeccCC
Q 016660          272 YCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       272 ~vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      ++|+++|.-                          ...+.+++.++++ |+++.++...
T Consensus        74 ~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-G~Iv~isS~~  131 (236)
T d1dhra_          74 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-GLLTLAGAKA  131 (236)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGG
T ss_pred             EEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc-cceeEEccHH
Confidence            999998740                          1233466677886 9999987643

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0017  Score=55.02  Aligned_cols=101  Identities=22%  Similarity=0.237  Sum_probs=70.1

Q ss_pred             hhhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCe-E-EeCCCCCchhHHHHh
Q 016660          192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE-F-VNSKNCGDKSIIIDM  265 (385)
Q Consensus       192 al~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~-v-v~~~~~~~~~~i~~~  265 (385)
                      .+...++++++++||=+|+|. |..+..+++..|+ +|++++.+++..+.+++    .|... + +...+  .    ..+
T Consensus        24 ~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d--~----~~~   95 (245)
T d1nkva_          24 TLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHND--A----AGY   95 (245)
T ss_dssp             HHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC--C----TTC
T ss_pred             HHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhhhH--H----hhc
Confidence            355778899999999999765 5567778888898 89999999988776654    45432 1 11112  1    122


Q ss_pred             -hCCCccEEEEcc------CChHHHHHHHHHhccCCceEEEec
Q 016660          266 -TDGGADYCFECV------GLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       266 -~~g~~d~vid~~------g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                       ..+.||+|+-.-      .-...++++.+.|+++ |+++..-
T Consensus        96 ~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG-G~l~i~~  137 (245)
T d1nkva_          96 VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE  137 (245)
T ss_dssp             CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC-cEEEEEe
Confidence             233799987531      2345688899999997 9987643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0028  Score=54.02  Aligned_cols=78  Identities=18%  Similarity=0.185  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeEEeCCCCCchhH----HHHhhC--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSI----IIDMTD--GG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~----i~~~~~--g~  269 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|.....-.-+......    +.....  |+
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            6889999987 9999999999999999 899999988776543    4456543222222222222    111111  47


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++++++|.
T Consensus        89 iDilvnnAG~   98 (255)
T d1fmca_          89 VDILVNNAGG   98 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEeeeCCcC
Confidence            9999999876

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.69  E-value=0.004  Score=52.57  Aligned_cols=78  Identities=19%  Similarity=0.234  Sum_probs=55.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeE-EeCCCCCchhH-HHHhhC--CCccEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF-VNSKNCGDKSI-IIDMTD--GGADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~v-v~~~~~~~~~~-i~~~~~--g~~d~vi  274 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+. ++++..+ .|..+....+. +.....  |++|++|
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   82 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEE
Confidence            5789999987 9999999999999999 8999999988877654 4555432 34444222222 222111  3699999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      +++|.
T Consensus        83 nnAG~   87 (242)
T d1ulsa_          83 HYAGI   87 (242)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99875

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0019  Score=54.71  Aligned_cols=76  Identities=20%  Similarity=0.269  Sum_probs=54.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe--EEeCCCCCchhHHHHhh--CCCccEEE
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSIIIDMT--DGGADYCF  274 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~--vv~~~~~~~~~~i~~~~--~g~~d~vi  274 (385)
                      -+|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+.+.....  +.|..   ....+....  -++.|+++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~id~lV   79 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVT---KKKQIDQFANEVERLDVLF   79 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTT---CHHHHHHHHHHCSCCSEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeecc---ccccccccccccccceeEE
Confidence            46889999987 9999999999999999 8999999988877666543322  23322   233222222  23799999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      ++.|.
T Consensus        80 n~ag~   84 (245)
T d2ag5a1          80 NVAGF   84 (245)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            99876

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.65  E-value=0.0066  Score=51.49  Aligned_cols=95  Identities=19%  Similarity=0.279  Sum_probs=63.8

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhh-CCCccE
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMT-DGGADY  272 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~-~g~~d~  272 (385)
                      ..+++++||=+|+|. |.+++.+++ .|. +|++++.+++-.+.+++    .|....+-..+      +.... .+.||+
T Consensus       117 ~~~~g~~VLDiGcGs-G~l~i~aa~-~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d------~~~~~~~~~fD~  187 (254)
T d2nxca1         117 HLRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGS------LEAALPFGPFDL  187 (254)
T ss_dssp             HCCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESC------HHHHGGGCCEEE
T ss_pred             hcCccCEEEEcccch-hHHHHHHHh-cCC-EEEEEECChHHHHHHHHHHHHcCCceeEEecc------ccccccccccch
Confidence            367999999999865 667766555 687 89999999998877663    44432221111      22222 347999


Q ss_pred             EEEccCCh---HHHHHHHHHhccCCceEEEecc
Q 016660          273 CFECVGLA---SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       273 vid~~g~~---~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      |+......   ..++.+.+.|+++ |++++.|.
T Consensus       188 V~ani~~~~l~~l~~~~~~~LkpG-G~lilSgi  219 (254)
T d2nxca1         188 LVANLYAELHAALAPRYREALVPG-GRALLTGI  219 (254)
T ss_dssp             EEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             hhhccccccHHHHHHHHHHhcCCC-cEEEEEec
Confidence            98654433   3346788899997 99987654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.65  E-value=0.0047  Score=52.70  Aligned_cols=78  Identities=19%  Similarity=0.161  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCe---EEeCCCCCchhH-H---HHhhCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE---FVNSKNCGDKSI-I---IDMTDG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~---vv~~~~~~~~~~-i---~~~~~g  268 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+.    +.+...   ..|..+...... +   .+..+|
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            6889999987 9999999999999999 8999999988766443    233332   223333211111 2   222235


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      .+|++++++|.
T Consensus        86 ~idilvnnAG~   96 (259)
T d1xq1a_          86 KLDILINNLGA   96 (259)
T ss_dssp             CCSEEEEECCC
T ss_pred             Ccccccccccc
Confidence            69999999886

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.63  E-value=0.0054  Score=52.92  Aligned_cols=101  Identities=12%  Similarity=0.160  Sum_probs=68.6

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhCC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~g  268 (385)
                      +.+..++++|++||=+|+|- |.++..+++..|+ +|++++.+++..+.+++    .|....+.....+.     ...++
T Consensus        44 ~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~-----~~~~~  116 (280)
T d2fk8a1          44 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW-----EDFAE  116 (280)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG-----GGCCC
T ss_pred             HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhh-----hhhcc
Confidence            55778899999999999864 3456778888899 99999999999887764    34321111111011     12244


Q ss_pred             CccEEEE-----ccCC---hHHHHHHHHHhccCCceEEEec
Q 016660          269 GADYCFE-----CVGL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       269 ~~d~vid-----~~g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .||.|+.     -++.   +..++.+.+.|+++ |++++-.
T Consensus       117 ~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg-G~~~i~~  156 (280)
T d2fk8a1         117 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQS  156 (280)
T ss_dssp             CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC-ceEEEEE
Confidence            7888853     2232   24478899999997 9998643

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.62  E-value=0.0076  Score=52.22  Aligned_cols=102  Identities=16%  Similarity=0.221  Sum_probs=70.3

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHHHhhCC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~~~~g  268 (385)
                      +.+.+++++|++||=+|+|- |-++..+|+..|+ +|++++.+++..+.++    +.|....+.....+.     ...++
T Consensus        53 ~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~-----~~~~~  125 (291)
T d1kpia_          53 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW-----EEFDE  125 (291)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG-----GGCCC
T ss_pred             HHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc-----ccccc
Confidence            55788999999999999864 4467888988999 8999999998866554    455432222111111     22345


Q ss_pred             CccEEEEc-----cCC----------hHHHHHHHHHhccCCceEEEecc
Q 016660          269 GADYCFEC-----VGL----------ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       269 ~~d~vid~-----~g~----------~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .||.|+..     ++.          +..++.+.+.|+++ |++++-..
T Consensus       126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg-G~~~l~~i  173 (291)
T d1kpia_         126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTI  173 (291)
T ss_dssp             CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT-CEEEEEEE
T ss_pred             ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC-CceEEEEE
Confidence            79988642     222          24578899999997 99986543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.62  E-value=0.0076  Score=51.26  Aligned_cols=102  Identities=22%  Similarity=0.294  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCCchHHH----HHHHcCCCeEEeCCCCCchhH----HHHhh--
Q 016660          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFE----IGKRFGVTEFVNSKNCGDKSI----IIDMT--  266 (385)
Q Consensus       199 ~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~----~~~~lg~~~vv~~~~~~~~~~----i~~~~--  266 (385)
                      .-.|+++||.|+ +++|.+.++.+...|+ +|+.+ .++++..+    .+++.|.+...-.-+......    +....  
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence            346899999987 9999999999999999 67665 45544433    344567653322222222222    22221  


Q ss_pred             CCCccEEEEccCCh-------------------------HHHHHHHHHhccCCceEEEecc
Q 016660          267 DGGADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       267 ~g~~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .|+.|++++++|..                         ...+.++..++++ |.++.+..
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~~iii~s  141 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSS  141 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC-Cccccccc
Confidence            23699999998862                         2345677788886 87776653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=96.60  E-value=0.0057  Score=49.20  Aligned_cols=104  Identities=13%  Similarity=0.110  Sum_probs=65.7

Q ss_pred             hhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe----------EEeCCCCCchh---
Q 016660          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE----------FVNSKNCGDKS---  260 (385)
Q Consensus       194 ~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~----------vv~~~~~~~~~---  260 (385)
                      +....+.++.+||.+|+|. |..++.||+. |+ +|+++|.|++-++.+++.....          ........+..   
T Consensus        13 ~~~l~~~~~~rvLd~GCG~-G~~a~~la~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHcCCCCCCEEEEecCcC-CHHHHHHHHc-CC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            3456789999999999876 6788888874 99 9999999999999887632110          00000000000   


Q ss_pred             -HHHHhhCCCccEEEEccCC--------hHHHHHHHHHhccCCceEEEec
Q 016660          261 -IIIDMTDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       261 -~i~~~~~g~~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                       .+.......+|+|++....        ...++.+.+.|+++ |++++..
T Consensus        90 ~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg-G~l~l~~  138 (201)
T d1pjza_          90 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLIT  138 (201)
T ss_dssp             SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEEE
T ss_pred             cccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC-cEEEEEE
Confidence             0001111258999874432        23467888999997 9876543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.59  E-value=0.0043  Score=52.64  Aligned_cols=169  Identities=13%  Similarity=0.089  Sum_probs=93.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeEEeCCCCCchhH----HHHhh--CCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSI----IIDMT--DGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~----i~~~~--~g~  269 (385)
                      ++.++||.|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|.....-.-+......    +.+..  -|+
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            5788899987 9999999998889999 899999988876643    3455443222222222222    22211  247


Q ss_pred             ccEEEEccCCh-------------------------HHHHHHHHHh-ccCCceEEEeccCCCCCccc-ccH---------
Q 016660          270 ADYCFECVGLA-------------------------SLVQEAYACC-RKGWGKTIVLGVDQPGSQLS-LSS---------  313 (385)
Q Consensus       270 ~d~vid~~g~~-------------------------~~~~~~~~~l-~~~~G~~v~~g~~~~~~~~~-~~~---------  313 (385)
                      +|+++++.|..                         ...+.++..+ +.++|++|.++........+ ...         
T Consensus        88 iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~  167 (251)
T d2c07a1          88 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVI  167 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHH
T ss_pred             ceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCCCHHHHHHHHHHH
Confidence            99999988751                         1123344444 22248999887532111000 000         


Q ss_pred             -------HHHhhcCcEEEEeeecCCCC---CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC
Q 016660          314 -------FEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  375 (385)
Q Consensus       314 -------~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~~~~  375 (385)
                             ..+-.+++++....-+...+   ....++..+.+.+. ++..    +.-.-+|+.++..+|.+..
T Consensus       168 ~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~-~pl~----R~~~pedvA~~v~fL~S~~  234 (251)
T d2c07a1         168 GFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISN-IPAG----RMGTPEEVANLACFLSSDK  234 (251)
T ss_dssp             HHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTT-CTTS----SCBCHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhhhhCeEEEEEccCCEecccccccCHHHHHHHHhc-CCCC----CCcCHHHHHHHHHHHhCch
Confidence                   11334577776654433221   12233444444333 2333    2334678889988886543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.58  E-value=0.003  Score=54.46  Aligned_cols=77  Identities=19%  Similarity=0.239  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-HHHcCCCeE---EeCCCCCchhH-HHHhhC--CCccE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEF---VNSKNCGDKSI-IIDMTD--GGADY  272 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~v---v~~~~~~~~~~-i~~~~~--g~~d~  272 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++. .+++|....   .|..+...... +.....  |.+|+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idi   82 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDT   82 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCccc
Confidence            5899999987 9999999999999999 89999999888754 445664432   23333211111 222222  36999


Q ss_pred             EEEccC
Q 016660          273 CFECVG  278 (385)
Q Consensus       273 vid~~g  278 (385)
                      +++++|
T Consensus        83 lvnnAG   88 (276)
T d1bdba_          83 LIPNAG   88 (276)
T ss_dssp             EECCCC
T ss_pred             cccccc
Confidence            999887

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.56  E-value=0.012  Score=50.40  Aligned_cols=102  Identities=24%  Similarity=0.247  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc-hHHH----HHHHcCCCeEEeCCCCCchhH----HHHhhC--
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE----IGKRFGVTEFVNSKNCGDKSI----IIDMTD--  267 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~----~~~~lg~~~vv~~~~~~~~~~----i~~~~~--  267 (385)
                      -+|.++||.|+ +++|.+.++.+...|+ +|+.++++. ++.+    .+++.|.+.....-+....+.    +.....  
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   94 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF   94 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence            35789999987 9999999999999999 788876653 3333    334566654333233233322    222222  


Q ss_pred             CCccEEEEccCCh-------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          268 GGADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       268 g~~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      |+.|+++.+.|..                         ...+.++..|.+. |+++.++..
T Consensus        95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-g~~i~i~s~  154 (272)
T d1g0oa_          95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI  154 (272)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred             CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc-ccccccccc
Confidence            3789999988752                         2245677788886 888877643

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.55  E-value=0.0079  Score=51.21  Aligned_cols=103  Identities=17%  Similarity=0.255  Sum_probs=71.6

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHH----c-C--CCeE-EeCCCCCchhHHH
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR----F-G--VTEF-VNSKNCGDKSIII  263 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~----l-g--~~~v-v~~~~~~~~~~i~  263 (385)
                      +...+++++|++||=.|+|. |.+++.||+..|.+ +|++++.+++..+.+++    + +  .+.+ +...+  ...  .
T Consensus        88 Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d--~~~--~  162 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD--LAD--S  162 (264)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC--GGG--C
T ss_pred             HHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc--ccc--c
Confidence            45678999999999998876 88889999988643 89999999998888764    2 1  2222 22222  110  0


Q ss_pred             HhhCCCccEEE-EccCChHHHHHHHHHhccCCceEEEec
Q 016660          264 DMTDGGADYCF-ECVGLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       264 ~~~~g~~d~vi-d~~g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .+.++.||.|| |.-.-...++.+.+.|+++ |+++.+.
T Consensus       163 ~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpG-G~lv~~~  200 (264)
T d1i9ga_         163 ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYV  200 (264)
T ss_dssp             CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred             cccCCCcceEEEecCCHHHHHHHHHhccCCC-CEEEEEe
Confidence            11223689775 4433345688999999997 9998874

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.54  E-value=0.0072  Score=51.38  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=51.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeE---EeCCCCCchhH-HHHhh--CCCc
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSI-IIDMT--DGGA  270 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v---v~~~~~~~~~~-i~~~~--~g~~  270 (385)
                      |+.+||.|+ +++|.+.++.+...|+ +|+.+++++++++.+    ++.|....   .|..+...... +....  -|+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            466789987 9999999999999999 899999998776643    34565432   23333211111 22221  2479


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++++++|.
T Consensus        81 DilVnnAG~   89 (257)
T d2rhca1          81 DVLVNNAGR   89 (257)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEecccc
Confidence            999999885

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.53  E-value=0.0043  Score=51.95  Aligned_cols=94  Identities=18%  Similarity=0.133  Sum_probs=68.5

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      ...++.+||=+|+|. |..+..+++ .|+ +|++++.+++.++.+++-+...++..+....     .+.++.||+|+.+.
T Consensus        39 ~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l-----~~~~~~fD~ii~~~  110 (246)
T d2avna1          39 YLKNPCRVLDLGGGT-GKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKAEDL-----PFPSGAFEAVLALG  110 (246)
T ss_dssp             HCCSCCEEEEETCTT-CHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCTTSC-----CSCTTCEEEEEECS
T ss_pred             hcCCCCEEEEECCCC-chhcccccc-cce-EEEEeeccccccccccccccccccccccccc-----ccccccccceeeec
Confidence            356788999889874 888888876 488 8999999999999999887766554333111     12234799998654


Q ss_pred             C------C-hHHHHHHHHHhccCCceEEEe
Q 016660          278 G------L-ASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       278 g------~-~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      .      . ...++++.+.|++| |.++..
T Consensus       111 ~~~~~~~d~~~~l~~i~r~Lk~g-G~~ii~  139 (246)
T d2avna1         111 DVLSYVENKDKAFSEIRRVLVPD-GLLIAT  139 (246)
T ss_dssp             SHHHHCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             chhhhhhhHHHHHHHHHhhcCcC-cEEEEE
Confidence            3      2 24467888999997 988754

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.53  E-value=0.0075  Score=50.95  Aligned_cols=78  Identities=23%  Similarity=0.252  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH--HHHHHHcCCCeE---EeCCCCCchhH-HHHhhC--CCcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVTEF---VNSKNCGDKSI-IIDMTD--GGAD  271 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~--~~~~~~lg~~~v---v~~~~~~~~~~-i~~~~~--g~~d  271 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++  .+.++++|....   .|..+...... +.+...  |++|
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iD   82 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   82 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            5788999987 9999999999999999 89988876543  334566776432   23333211111 222222  4799


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      ++++++|.
T Consensus        83 ilVnnAG~   90 (247)
T d2ew8a1          83 ILVNNAGI   90 (247)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999886

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.53  E-value=0.0081  Score=52.07  Aligned_cols=79  Identities=11%  Similarity=0.091  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-----HHcCCCeEEeCCCCCchhHHH----H--hhC
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-----KRFGVTEFVNSKNCGDKSIII----D--MTD  267 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-----~~lg~~~vv~~~~~~~~~~i~----~--~~~  267 (385)
                      -+|.++||.|+ +++|.+.++.+...|+ +|+.+++++++.+.+     .+.|.....-.-+......+.    .  ...
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhc
Confidence            36799999987 9999999999999999 899999988765432     234544322112212222211    1  123


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|+++++.|.
T Consensus       102 g~iDilvnnAg~  113 (294)
T d1w6ua_         102 GHPNIVINNAAG  113 (294)
T ss_dssp             CSCSEEEECCCC
T ss_pred             cccchhhhhhhh
Confidence            479999999885

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.52  E-value=0.0077  Score=51.25  Aligned_cols=78  Identities=26%  Similarity=0.293  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----c--CCCeE---EeCCCCCchhH-HHHhhC--
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F--GVTEF---VNSKNCGDKSI-IIDMTD--  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----l--g~~~v---v~~~~~~~~~~-i~~~~~--  267 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+.+    .  +...+   .|..+...... +.....  
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            5788999987 9999999999999999 89999999887664432    2  22222   24333222211 222211  


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      |++|++++++|.
T Consensus        82 G~iDiLVnnAG~   93 (258)
T d1iy8a_          82 GRIDGFFNNAGI   93 (258)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            469999998873

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.52  E-value=0.016  Score=45.58  Aligned_cols=91  Identities=20%  Similarity=0.271  Sum_probs=65.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHHcCC-CeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~lg~-~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +|+|+|.|.+|...+..++..|.. +|++.+++++.++.+++.+. +......+        .......|+||-|+....
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~dlIila~p~~~   74 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA--------KVEDFSPDFVMLSSPVRT   74 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGG--------GGGGTCCSEEEECSCHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhh--------hhhccccccccccCCchh
Confidence            699999999999999889888853 89999999999999999986 33332211        111125799999988654


Q ss_pred             H---HHHHHHHhccCCceEEEeccC
Q 016660          282 L---VQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       282 ~---~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      .   +++....+.++ ..++.++..
T Consensus        75 ~~~vl~~l~~~~~~~-~ii~d~~s~   98 (171)
T d2g5ca2          75 FREIAKKLSYILSED-ATVTDQGSV   98 (171)
T ss_dssp             HHHHHHHHHHHSCTT-CEEEECCSC
T ss_pred             hhhhhhhhhcccccc-ccccccccc
Confidence            2   44555666775 666666643

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.51  E-value=0.0052  Score=52.45  Aligned_cols=78  Identities=21%  Similarity=0.139  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch-HHH----HHHHcCCCeEE---eCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFE----IGKRFGVTEFV---NSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~-~~~----~~~~lg~~~vv---~~~~~~~~~~-i~~~~--~g  268 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.++++.+ +.+    .+++.|.+...   |..+...... +....  -|
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            6788999987 9999999999999999 8888887754 333    34456654322   3333111111 22211  14


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|++++++|.
T Consensus        85 ~iDiLVnnAG~   95 (261)
T d1geea_          85 KLDVMINNAGL   95 (261)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEeecccee
Confidence            79999999876

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0025  Score=52.29  Aligned_cols=97  Identities=15%  Similarity=0.105  Sum_probs=62.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .++|+|+|+ |.+|...+..+...|+ +|+++.+++++.......++. ++.-+- ...+.+.+... +.|+||.++|..
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~-~~~gD~-~d~~~l~~al~-~~d~vi~~~g~~   78 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAH-VVVGDV-LQAADVDKTVA-GQDAVIVLLGTR   78 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSE-EEESCT-TSHHHHHHHHT-TCSEEEECCCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhcccccccccc-cccccc-cchhhHHHHhc-CCCEEEEEeccC
Confidence            467999997 9999999998888999 899999988886544434443 332222 23333444443 589999999853


Q ss_pred             ----------HHHHHHHHHhccC-CceEEEecc
Q 016660          281 ----------SLVQEAYACCRKG-WGKTIVLGV  302 (385)
Q Consensus       281 ----------~~~~~~~~~l~~~-~G~~v~~g~  302 (385)
                                .....+++.++.. -.+++.++.
T Consensus        79 ~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          79 NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             TCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence                      1122344444443 136777754

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0067  Score=51.18  Aligned_cols=104  Identities=17%  Similarity=0.175  Sum_probs=67.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCe---EEeCCCCCchhH-HHHh--hCCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE---FVNSKNCGDKSI-IIDM--TDGG  269 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vv~~~~~~~~~~-i~~~--~~g~  269 (385)
                      .|.++||.|+ +++|...+..+...|+ +|+.+++++++++.+    ++.|...   ..|..+...... +...  ..|.
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD   84 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            5889999987 9999999988889999 899999999887643    3455432   234444222111 2222  1336


Q ss_pred             ccEEEEccCCh-------------------------HHHHHHHHHhcc-CCceEEEeccCCC
Q 016660          270 ADYCFECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGVDQP  305 (385)
Q Consensus       270 ~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~~~  305 (385)
                      .|++++++|..                         ...+.++..+.+ ++|++|.++....
T Consensus        85 idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~  146 (244)
T d1yb1a_          85 VSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAG  146 (244)
T ss_dssp             CSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-
T ss_pred             CceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchh
Confidence            99999999862                         112345555533 3478998886543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0084  Score=52.14  Aligned_cols=81  Identities=14%  Similarity=0.154  Sum_probs=53.5

Q ss_pred             cCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc--------CCCeE---EeCCCCCchhH-HH
Q 016660          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF--------GVTEF---VNSKNCGDKSI-II  263 (385)
Q Consensus       198 ~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l--------g~~~v---v~~~~~~~~~~-i~  263 (385)
                      +.-+|.++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+. ++        +...+   .|..+...... +.
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~   86 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK   86 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence            3457899999987 9999999999999999 8999999988765432 22        22222   23333111111 22


Q ss_pred             Hhh--CCCccEEEEccCC
Q 016660          264 DMT--DGGADYCFECVGL  279 (385)
Q Consensus       264 ~~~--~g~~d~vid~~g~  279 (385)
                      ...  -|+.|++++++|.
T Consensus        87 ~~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          87 STLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHhCCeEEEEeeccc
Confidence            221  2379999999875

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.48  E-value=0.0045  Score=52.79  Aligned_cols=78  Identities=23%  Similarity=0.270  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHH-----HHHcCCCeE---EeCCCCCchhH-HHHhh--CC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-----GKRFGVTEF---VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-----~~~lg~~~v---v~~~~~~~~~~-i~~~~--~g  268 (385)
                      +|+++||.|+ +++|.+.++.+...|+ +|+.+++++++.+.     .++.|.+..   .|..+.+.... +....  -|
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5788999987 9999999999999999 89999988776543     234565432   23333221111 22221  24


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ++|+++++.|.
T Consensus        87 ~iDilVnnAg~   97 (260)
T d1h5qa_          87 PISGLIANAGV   97 (260)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCcEecccccc
Confidence            79999998874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0061  Score=51.77  Aligned_cols=78  Identities=23%  Similarity=0.207  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-Hc----CC-CeE---EeCCCCCchhH-HHHhhC--
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GV-TEF---VNSKNCGDKSI-IIDMTD--  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l----g~-~~v---v~~~~~~~~~~-i~~~~~--  267 (385)
                      .|+++||.|+ +++|.+.++.+...|+ +|+.+++++++.+.+. ++    +. ...   .|..+....+. +.....  
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            4788999987 9999999999999999 8999999988766443 22    21 211   23333221112 222222  


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      |++|++++++|.
T Consensus        81 G~iDilVnnAg~   92 (254)
T d2gdza1          81 GRLDILVNNAGV   92 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcCeecccccc
Confidence            479999999986

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0021  Score=56.79  Aligned_cols=105  Identities=18%  Similarity=0.221  Sum_probs=68.5

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHH----cC-----------CCeE-EeCCC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR----FG-----------VTEF-VNSKN  255 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~----lg-----------~~~v-v~~~~  255 (385)
                      +...+++++|++||=.|+|. |.+++.+|+..|.+ +|++++.+++..+.+++    ++           .+.+ +...+
T Consensus        90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d  168 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  168 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence            44567899999999999876 88899999988743 89999999998887663    11           1111 11111


Q ss_pred             CCchhHHHHhhCCCccEEE-EccCChHHHHHHHHHhccCCceEEEec
Q 016660          256 CGDKSIIIDMTDGGADYCF-ECVGLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       256 ~~~~~~i~~~~~g~~d~vi-d~~g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                        .......+..+.||.|| |.-.-...+..+.+.|++| |+++.+.
T Consensus       169 --i~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpG-G~lv~~~  212 (324)
T d2b25a1         169 --ISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYV  212 (324)
T ss_dssp             --TTCCC-------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEE
T ss_pred             --hhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCC-CEEEEEe
Confidence              11001112223588775 5433335688999999997 9999875

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.41  E-value=0.0042  Score=51.95  Aligned_cols=101  Identities=20%  Similarity=0.251  Sum_probs=68.4

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeE-EeCCCCCchhHHHHhhC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF-VNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~v-v~~~~~~~~~~i~~~~~  267 (385)
                      +...+.+++|++||=+|+|. |..+..+++. +. +|++++.++..++.+++    .+.+.+ +...+  ...  ..+.+
T Consensus         8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d--~~~--~~~~~   80 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGT--AES--LPFPD   80 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECB--TTB--CCSCT
T ss_pred             HHHHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CC-eEEEEeCChhhhhhhhhhhcccccccccccccc--ccc--ccccc
Confidence            56788999999999999876 7777788775 55 89999999887776653    343322 11111  110  11223


Q ss_pred             CCccEEEEccCC------hHHHHHHHHHhccCCceEEEec
Q 016660          268 GGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       268 g~~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +.||+|+.+-.-      ...++++.+.|+++ |++++.-
T Consensus        81 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~~~~~~  119 (234)
T d1xxla_          81 DSFDIITCRYAAHHFSDVRKAVREVARVLKQD-GRFLLVD  119 (234)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cccceeeeeceeecccCHHHHHHHHHHeeCCC-cEEEEEE
Confidence            479999864322      35578999999997 9887753

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.013  Score=45.73  Aligned_cols=99  Identities=16%  Similarity=0.210  Sum_probs=70.3

Q ss_pred             hhhhhcc-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCc
Q 016660          192 AAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       192 al~~~~~-~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      ++.+..+ .-.|.+|+|+|-|-+|...++.++.+|+ +|++++.++-+.-.+.--|. .+..         +.+. -...
T Consensus        13 ~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~-~v~~---------~~~a-~~~a   80 (163)
T d1li4a1          13 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGY-EVTT---------MDEA-CQEG   80 (163)
T ss_dssp             HHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC-EECC---------HHHH-TTTC
T ss_pred             HHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCce-Eeee---------hhhh-hhhc
Confidence            3444444 4589999999999999999999999999 99999988766444443343 2221         1111 1247


Q ss_pred             cEEEEccCChHHH-HHHHHHhccCCceEEEeccC
Q 016660          271 DYCFECVGLASLV-QEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       271 d~vid~~g~~~~~-~~~~~~l~~~~G~~v~~g~~  303 (385)
                      |+++-+.|....+ .+-++.|+++ ..++.+|..
T Consensus        81 divvtaTGn~~vI~~eh~~~MKdg-aIL~N~Ghf  113 (163)
T d1li4a1          81 NIFVTTTGCIDIILGRHFEQMKDD-AIVCNIGHF  113 (163)
T ss_dssp             SEEEECSSCSCSBCHHHHTTCCTT-EEEEECSSS
T ss_pred             cEEEecCCCccchhHHHHHhccCC-eEEEEeccc
Confidence            9999999986544 5788899996 666666654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0075  Score=51.78  Aligned_cols=99  Identities=18%  Similarity=0.251  Sum_probs=61.4

Q ss_pred             CCEE-EEEcC-CHHHHHHHH-HHHHcCCCEEEEEcCCchHHHHH----HHcCCC-eE--EeCCCCCchhH-HHHhh--CC
Q 016660          202 GSTV-VIFGL-GSIGLAVAE-GARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSI-IIDMT--DG  268 (385)
Q Consensus       202 ~~~V-lI~G~-g~vG~~ai~-la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v--v~~~~~~~~~~-i~~~~--~g  268 (385)
                      |.+| ||.|+ +++|+.+++ |++.-|+ +|+.+.+++++.+.+    ++.|.. .+  .|..+...-.. +....  .+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            5567 66687 999998765 5566688 899999998887643    233433 22  23333111111 11221  13


Q ss_pred             CccEEEEccCCh-------------------------HHHHHHHHHhccCCceEEEecc
Q 016660          269 GADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       269 ~~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ++|++|+.+|..                         ...+.++..|++. |+++.++.
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-g~ivnisS  138 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ-GRVVNVSS  138 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECC
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccc
Confidence            799999998852                         1234456677885 99998864

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.36  E-value=0.0093  Score=49.88  Aligned_cols=72  Identities=21%  Similarity=0.197  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.++++++++   ++.+...+ .|.++  ..+.+.+.. +.+|++++++|
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l---~~~~~~~~~~Dv~~--~~~~~~~~~-g~iD~lVnnAG   75 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL---KRSGHRYVVCDLRK--DLDLLFEKV-KEVDILVLNAG   75 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH---HHTCSEEEECCTTT--CHHHHHHHS-CCCSEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH---HhcCCcEEEcchHH--HHHHHHHHh-CCCcEEEeccc
Confidence            5789999987 9999999999999999 899998876554   44554432 33333  222233322 47999999887


Q ss_pred             C
Q 016660          279 L  279 (385)
Q Consensus       279 ~  279 (385)
                      .
T Consensus        76 ~   76 (234)
T d1o5ia_          76 G   76 (234)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.32  E-value=0.0083  Score=50.78  Aligned_cols=78  Identities=22%  Similarity=0.203  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCC--C-eE--EeCCCCCchhH-HHHhhC--CCc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV--T-EF--VNSKNCGDKSI-IIDMTD--GGA  270 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~--~-~v--v~~~~~~~~~~-i~~~~~--g~~  270 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++.  . ..  .|..+...... +.....  |++
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   83 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCc
Confidence            5888999987 9999999999999999 8999999988777544 3332  1 22  23333111111 222211  479


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++++++|.
T Consensus        84 DiLVnnAg~   92 (251)
T d1zk4a1          84 STLVNNAGI   92 (251)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEecccc
Confidence            999999876

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.31  E-value=0.012  Score=49.23  Aligned_cols=94  Identities=17%  Similarity=0.199  Sum_probs=60.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhH-------HHHhhC-CCccE
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSI-------IIDMTD-GGADY  272 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~-------i~~~~~-g~~d~  272 (385)
                      +.+|||.|+ +++|.+.++.+...|+ +|+.++++++...      ........+......       +..... +.+|+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~   74 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA------DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDG   74 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS------SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhcc------cccceeccccCchhHHHHHHHHHHHHhcCCCeeE
Confidence            357899987 9999999999999999 8999988765321      111111111111111       222223 37999


Q ss_pred             EEEccCCh--------------------------HHHHHHHHHhccCCceEEEeccC
Q 016660          273 CFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       273 vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +|+++|..                          ...+.++..++++ |+++.++..
T Consensus        75 linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~Iv~isS~  130 (235)
T d1ooea_          75 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAA  130 (235)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred             EEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc-eEEEEeccH
Confidence            99988741                          1134566777886 999998754

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.29  E-value=0.0097  Score=50.61  Aligned_cols=78  Identities=21%  Similarity=0.285  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc-hHHHHH-----HHcCCCeEEeCCCCCchhHHH----HhhC--
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIG-----KRFGVTEFVNSKNCGDKSIII----DMTD--  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~~~-----~~lg~~~vv~~~~~~~~~~i~----~~~~--  267 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++ ++.+.+     .+.|.......-+....+.+.    ....  
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            6788999987 9999999999999999 899998864 333322     234554333222322222222    2111  


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      |++|++|+++|.
T Consensus        82 G~iDiLVnnAG~   93 (260)
T d1x1ta1          82 GRIDILVNNAGI   93 (260)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCcEEEeeccc
Confidence            469999999885

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.24  E-value=0.013  Score=49.64  Aligned_cols=75  Identities=17%  Similarity=0.138  Sum_probs=49.9

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeE---EeCCCCCchhH-HHHhh--CCCccE
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSI-IIDMT--DGGADY  272 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v---v~~~~~~~~~~-i~~~~--~g~~d~  272 (385)
                      .+||.|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|.+..   .|..+...... +....  -|++|+
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            4688887 9999999988888999 899999998876643    34565432   23333111111 22221  247999


Q ss_pred             EEEccCC
Q 016660          273 CFECVGL  279 (385)
Q Consensus       273 vid~~g~  279 (385)
                      +++++|.
T Consensus        82 lVnnAG~   88 (255)
T d1gega_          82 IVNNAGV   88 (255)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9999875

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.21  E-value=0.014  Score=48.54  Aligned_cols=102  Identities=16%  Similarity=0.219  Sum_probs=67.9

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHHc----CCCeEEeCCCCCchhHHHHhhCCC
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~l----g~~~vv~~~~~~~~~~i~~~~~g~  269 (385)
                      +...+++|++||=+|+|. |..+..+|+..|- .+|++++.+++.++.+++.    +....+..+. ..... .......
T Consensus        67 ~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~-~~~~~-~~~~~~~  143 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA-TKPEE-YRALVPK  143 (227)
T ss_dssp             CCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT-TCGGG-GTTTCCC
T ss_pred             cccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEEC-CCccc-ccccccc
Confidence            456799999999999876 8888999998864 3899999999988877653    2222222222 11111 1112236


Q ss_pred             ccEEEEccCCh----HHHHHHHHHhccCCceEEEe
Q 016660          270 ADYCFECVGLA----SLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       270 ~d~vid~~g~~----~~~~~~~~~l~~~~G~~v~~  300 (385)
                      +|+++..+...    ..+..+.+.|+++ |+++.+
T Consensus       144 vD~i~~d~~~~~~~~~~l~~~~~~Lkpg-G~lvi~  177 (227)
T d1g8aa_         144 VDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             eEEEEEEccccchHHHHHHHHHHhcccC-CeEEEE
Confidence            88887554432    3477888999997 988764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.20  E-value=0.01  Score=50.72  Aligned_cols=79  Identities=23%  Similarity=0.257  Sum_probs=53.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCC---CeEE--eCCCCCchhH-HHHhh--CCC
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV---TEFV--NSKNCGDKSI-IIDMT--DGG  269 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~---~~vv--~~~~~~~~~~-i~~~~--~g~  269 (385)
                      -+|.++||.|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++.   ...+  |..+...... +....  -|.
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            36889999987 9999999999999999 8999999988876543 4432   1222  3333111111 22211  147


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      +|++++++|.
T Consensus        83 iD~lVnnAG~   92 (268)
T d2bgka1          83 LDIMFGNVGV   92 (268)
T ss_dssp             CCEEEECCCC
T ss_pred             cceecccccc
Confidence            9999998874

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=96.19  E-value=0.013  Score=49.68  Aligned_cols=82  Identities=17%  Similarity=0.195  Sum_probs=52.1

Q ss_pred             cCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH-------HHHHHHcCCCeEEeCCCCCchhHHHH----h
Q 016660          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------FEIGKRFGVTEFVNSKNCGDKSIIID----M  265 (385)
Q Consensus       198 ~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~-------~~~~~~lg~~~vv~~~~~~~~~~i~~----~  265 (385)
                      .++|+.++||.|+ |++|...++.+-..|+++|+.+.++..+       .+.+++.|....+-.-+......+.+    .
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i   84 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI   84 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccc
Confidence            5789999999987 9999999988888898767777665321       22334567643222222122222222    2


Q ss_pred             hCC-CccEEEEccCC
Q 016660          266 TDG-GADYCFECVGL  279 (385)
Q Consensus       266 ~~g-~~d~vid~~g~  279 (385)
                      ... ..|.++.+.|.
T Consensus        85 ~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          85 GDDVPLSAVFHAAAT   99 (259)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             ccccccccccccccc
Confidence            222 68999998885

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.17  E-value=0.03  Score=46.93  Aligned_cols=162  Identities=15%  Similarity=0.084  Sum_probs=86.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCCchHHHHH----HHcCCCeE---EeCCCCCchhH-HHHhh--CCCcc
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTEF---VNSKNCGDKSI-IIDMT--DGGAD  271 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~----~~lg~~~v---v~~~~~~~~~~-i~~~~--~g~~d  271 (385)
                      .|||.|+ +++|.+.++.+...|+ +|+.+ .+++++.+.+    ++.|.+..   .|..+...... +....  -|++|
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID   81 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            5778887 9999999999999999 77765 4555554433    34565422   23333111111 22211  24799


Q ss_pred             EEEEccCCh-------------------------HHHHHHHHHh--ccCCceEEEeccCCCCCccc-ccH----------
Q 016660          272 YCFECVGLA-------------------------SLVQEAYACC--RKGWGKTIVLGVDQPGSQLS-LSS----------  313 (385)
Q Consensus       272 ~vid~~g~~-------------------------~~~~~~~~~l--~~~~G~~v~~g~~~~~~~~~-~~~----------  313 (385)
                      ++++++|..                         ...+.+++.|  +++ |++|.++........+ ...          
T Consensus        82 iLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~~~~~~~~~~~~Y~asKaal~~  160 (244)
T d1edoa_          82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK-GRIINIASVVGLIGNIGQANYAAAKAGVIG  160 (244)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHCCTTCHHHHHHHHHHHH
T ss_pred             ccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCC-cEEEEEcChhhcCCCCCCHHHHHHHHHHHH
Confidence            999998851                         1234455555  344 9999887532111110 000          


Q ss_pred             ------HHHhhcCcEEEEeeecCCCC---CCcHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHh
Q 016660          314 ------FEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI  372 (385)
Q Consensus       314 ------~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~a~~~l~  372 (385)
                            ..+-.+++++....-+...+   ....++..+.+.+. ++..    +...-+|+.++..+|.
T Consensus       161 ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~-~pl~----R~~~p~dvA~~v~fLa  223 (244)
T d1edoa_         161 FSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGT-IPLG----RTGQPENVAGLVEFLA  223 (244)
T ss_dssp             HHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTS-CTTC----SCBCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhhhCcEEEEEecceeccHHHHHhhHHHHHHHHhc-CCCC----CCcCHHHHHHHHHHHH
Confidence                  11234577776655443321   11122333333322 2333    2334688999998884

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.17  E-value=0.0075  Score=51.92  Aligned_cols=102  Identities=14%  Similarity=0.059  Sum_probs=68.7

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC---eEEeCCCCCchhHHHHh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSIIIDM  265 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vv~~~~~~~~~~i~~~  265 (385)
                      +.....+.++.+||=+|+|. |..+..+++..|+ +|++++.++..++.+++    .|..   .++..+-...     .+
T Consensus        59 l~~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-----~~  131 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-----PC  131 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-----SS
T ss_pred             HHHhcCCCCCCEEEEeCCCC-cHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccc-----cc
Confidence            34456789999999999874 6677888887898 89999999988776664    3432   1222111010     12


Q ss_pred             hCCCccEEEEccC-----C-hHHHHHHHHHhccCCceEEEecc
Q 016660          266 TDGGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       266 ~~g~~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ..+.||+|+-.-.     . ...+.++.++|+++ |++++...
T Consensus       132 ~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg-G~l~~~~~  173 (282)
T d2o57a1         132 EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP  173 (282)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cccccchhhccchhhhccCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            2347999975322     1 24578999999997 99887643

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.15  E-value=0.0061  Score=50.59  Aligned_cols=101  Identities=18%  Similarity=0.249  Sum_probs=68.9

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeE--EeCCCCCchhHHHHhh
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF--VNSKNCGDKSIIIDMT  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~v--v~~~~~~~~~~i~~~~  266 (385)
                      +.+.++++++++||=+|+| .|..+..+++. |. +|++++.+++.++.+++    .+.+.+  +..+...     ..+.
T Consensus         7 ll~~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~-----l~~~   78 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ-----MPFT   78 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C-----CCSC
T ss_pred             HHHhcCCCCcCEEEEeccc-CcHHHHHHHHh-CC-EEEEEECCHHHHhhhhhccccccccccccccccccc-----cccc
Confidence            5677899999999999987 47777777755 66 89999999987776653    454432  2221111     1122


Q ss_pred             CCCccEEEEccC-----Ch-HHHHHHHHHhccCCceEEEecc
Q 016660          267 DGGADYCFECVG-----LA-SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       267 ~g~~d~vid~~g-----~~-~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .+.||+|+-.-.     .+ ..+.++.++|++| |+++..-.
T Consensus        79 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~i~~~  119 (231)
T d1vl5a_          79 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVDN  119 (231)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             ccccccccccccccccCCHHHHHHHHHHhcCCC-cEEEEEeC
Confidence            347999985432     22 4578999999997 99887643

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.12  E-value=0.022  Score=46.17  Aligned_cols=82  Identities=22%  Similarity=0.244  Sum_probs=59.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.|.+|+|.|.|.+|..+++++...|+ +|++++.+.++......+|.+.+ ..++         +..-..|+.+=|...
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~~~-~~~~---------~~~~~~DI~iPcA~~   93 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-ALED---------VLSTPCDVFAPCAMG   93 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CGGG---------GGGCCCSEEEECSCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhccccc-Cccc---------cccccceeeeccccc
Confidence            478999999999999999999999999 89999999999998888887533 2222         122257888877655


Q ss_pred             hHHHHHHHHHhcc
Q 016660          280 ASLVQEAYACCRK  292 (385)
Q Consensus       280 ~~~~~~~~~~l~~  292 (385)
                      ...=.+..+.++.
T Consensus        94 ~~I~~~~a~~i~a  106 (201)
T d1c1da1          94 GVITTEVARTLDC  106 (201)
T ss_dssp             CCBCHHHHHHCCC
T ss_pred             ccccHHHHhhhhh
Confidence            4322334444433

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.12  E-value=0.0092  Score=51.13  Aligned_cols=78  Identities=23%  Similarity=0.223  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCC--CeE----EeCCCCCchhH-HHHhhC-
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--TEF----VNSKNCGDKSI-IIDMTD-  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~--~~v----v~~~~~~~~~~-i~~~~~-  267 (385)
                      +|+++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+.    +.+.  ..+    .|..+...... +..... 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            5788999987 9999999999999999 8999999988776543    3332  112    23333222111 222222 


Q ss_pred             -CCccEEEEccCC
Q 016660          268 -GGADYCFECVGL  279 (385)
Q Consensus       268 -g~~d~vid~~g~  279 (385)
                       |++|++++++|.
T Consensus        83 ~g~iDilvnnAG~   95 (272)
T d1xkqa_          83 FGKIDVLVNNAGA   95 (272)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCceEEEeCCcc
Confidence             479999998774

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.10  E-value=0.011  Score=46.81  Aligned_cols=72  Identities=15%  Similarity=0.099  Sum_probs=49.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCC---CeEEeCCCCCchhHHHHhhCCCccEEE
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV---TEFVNSKNCGDKSIIIDMTDGGADYCF  274 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~---~~vv~~~~~~~~~~i~~~~~g~~d~vi  274 (385)
                      ..++.+|+|+|+|+.+.+++..+...+ ++|+++.++.++.+.+. .++.   ...+..++         .....+|++|
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~---------~~~~~~diiI   84 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYGNIQAVSMDS---------IPLQTYDLVI   84 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG---------CCCSCCSEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHHHHhhccccchhhhcc---------ccccccceee
Confidence            457889999999999999888887755 48999999988877543 3331   11221111         1123689999


Q ss_pred             EccCCh
Q 016660          275 ECVGLA  280 (385)
Q Consensus       275 d~~g~~  280 (385)
                      +|++..
T Consensus        85 N~tp~g   90 (171)
T d1p77a1          85 NATSAG   90 (171)
T ss_dssp             ECCCC-
T ss_pred             eccccc
Confidence            998864

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0043  Score=43.84  Aligned_cols=36  Identities=31%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      ++.+|+|+|.|..|+.+++++...|+ +|++.+..++
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcC
Confidence            57789999999999999999999999 8999987443

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.05  E-value=0.0071  Score=51.15  Aligned_cols=78  Identities=17%  Similarity=0.140  Sum_probs=52.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHHcCCC--eEE--eCCCCCchhH----HHHhhCC-Cc
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVT--EFV--NSKNCGDKSI----IIDMTDG-GA  270 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~lg~~--~vv--~~~~~~~~~~----i~~~~~g-~~  270 (385)
                      ..+|||.|+ +++|...++.+...|+. +|+.+.++.++.+.+++....  +++  |..+......    +.+..+. +.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            478999997 99999988888778853 788888999888877765432  222  3333111111    2223333 69


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |++|+++|.
T Consensus        83 dilinnAG~   91 (250)
T d1yo6a1          83 SLLINNAGV   91 (250)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEcCcc
Confidence            999999884

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0048  Score=51.50  Aligned_cols=99  Identities=14%  Similarity=0.155  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC---eEEeCCCCCchhHHHHhhCCCccEE-E
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT---EFVNSKNCGDKSIIIDMTDGGADYC-F  274 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~---~vv~~~~~~~~~~i~~~~~g~~d~v-i  274 (385)
                      ..+|.+||-+|+|. |..+..+++..+. +|++++.+++.++.+++....   .+..... ........+..+.||.+ |
T Consensus        51 ~~~g~~VLdIGcG~-G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~fD~i~f  127 (229)
T d1zx0a1          51 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKG-LWEDVAPTLPDGHFDGILY  127 (229)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEES-CHHHHGGGSCTTCEEEEEE
T ss_pred             ccCCCeEEEeeccc-hHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhcccccccccc-cccccccccccccccceee
Confidence            36788999999865 6778888887655 899999999999888764321   1111111 11111223333478887 5


Q ss_pred             EccCCh----------HHHHHHHHHhccCCceEEEec
Q 016660          275 ECVGLA----------SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       275 d~~g~~----------~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      |.+...          ..++.+.+.|++| |+++++.
T Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~r~LkpG-G~~~~~~  163 (229)
T d1zx0a1         128 DTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCN  163 (229)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred             cccccccccccccCHHHHHHHHHHHcCCC-cEEEEEe
Confidence            765432          2456788999997 9988653

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.95  E-value=0.026  Score=45.09  Aligned_cols=98  Identities=16%  Similarity=0.143  Sum_probs=64.7

Q ss_pred             hhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-eE--EeCCCCCchhHHHHhh
Q 016660          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF--VNSKNCGDKSIIIDMT  266 (385)
Q Consensus       194 ~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~v--v~~~~~~~~~~i~~~~  266 (385)
                      ....+++++++||=+|+|. |..++.+|+. +. +|++++.+++.++.+++    +|.. .+  +.. +   ..  ....
T Consensus        26 l~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~g-d---a~--~~~~   96 (186)
T d1l3ia_          26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG-D---AP--EALC   96 (186)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES-C---HH--HHHT
T ss_pred             HHhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEEC-c---hh--hccc
Confidence            3456889999999998754 4555666664 44 89999999988877664    5642 32  221 1   11  1122


Q ss_pred             C-CCccEEEEccCC---hHHHHHHHHHhccCCceEEEec
Q 016660          267 D-GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       267 ~-g~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      . ..+|.|+-..+.   ...++.+.+.|+++ |+++...
T Consensus        97 ~~~~~D~v~~~~~~~~~~~~~~~~~~~Lkpg-G~lvi~~  134 (186)
T d1l3ia_          97 KIPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA  134 (186)
T ss_dssp             TSCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             ccCCcCEEEEeCccccchHHHHHHHHHhCcC-CEEEEEe
Confidence            3 379998865433   34477888999997 9987654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.93  E-value=0.013  Score=50.29  Aligned_cols=78  Identities=22%  Similarity=0.249  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC--eE----EeCCCCCchhH-HHHhhC-
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT--EF----VNSKNCGDKSI-IIDMTD-  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~--~v----v~~~~~~~~~~-i~~~~~-  267 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+.    +.|..  .+    .|..+...... +..... 
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            5788999987 9999999999999999 8999999988766443    34431  22    23333222111 222221 


Q ss_pred             -CCccEEEEccCC
Q 016660          268 -GGADYCFECVGL  279 (385)
Q Consensus       268 -g~~d~vid~~g~  279 (385)
                       |.+|++++++|.
T Consensus        82 ~G~iDilVnnAG~   94 (274)
T d1xhla_          82 FGKIDILVNNAGA   94 (274)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCceEEEeeccc
Confidence             369999998874

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.90  E-value=0.017  Score=45.15  Aligned_cols=88  Identities=17%  Similarity=0.147  Sum_probs=63.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLV  283 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~  283 (385)
                      +|-|+|.|.+|...+.-+...|+ .|++.++++++.+.+.+.++...-      ....+.+    ..|++|-|+..+..+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~------~~~e~~~----~~d~ii~~v~~~~~v   70 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAETAS------TAKAIAE----QCDVIITMLPNSPHV   70 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEECS------SHHHHHH----HCSEEEECCSSHHHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhhhcc------cHHHHHh----CCCeEEEEcCCHHHH
Confidence            47889999999998888888999 899999999999999888864221      1111111    379999999887766


Q ss_pred             HHHH-------HHhccCCceEEEeccC
Q 016660          284 QEAY-------ACCRKGWGKTIVLGVD  303 (385)
Q Consensus       284 ~~~~-------~~l~~~~G~~v~~g~~  303 (385)
                      +..+       ..++++ ..++.++..
T Consensus        71 ~~v~~~~~~~~~~~~~g-~iiid~sT~   96 (161)
T d1vpda2          71 KEVALGENGIIEGAKPG-TVLIDMSSI   96 (161)
T ss_dssp             HHHHHSTTCHHHHCCTT-CEEEECSCC
T ss_pred             HHHHhCCcchhhccCCC-CEEEECCCC
Confidence            6543       345564 556666553

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.87  E-value=0.013  Score=49.90  Aligned_cols=78  Identities=19%  Similarity=0.194  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC--eE----EeCCCCCchhH-HHHhhC-
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT--EF----VNSKNCGDKSI-IIDMTD-  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~--~v----v~~~~~~~~~~-i~~~~~-  267 (385)
                      +|+++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+.    +.+..  .+    .|..+...... +..... 
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            6788899987 9999999999999999 8999999988766443    33321  12    23333222112 222221 


Q ss_pred             -CCccEEEEccCC
Q 016660          268 -GGADYCFECVGL  279 (385)
Q Consensus       268 -g~~d~vid~~g~  279 (385)
                       |+.|++++++|.
T Consensus        83 ~g~iDilvnnAG~   95 (264)
T d1spxa_          83 FGKLDILVNNAGA   95 (264)
T ss_dssp             HSCCCEEEECCC-
T ss_pred             hCCCCEeeccccc
Confidence             479999999874

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0087  Score=43.73  Aligned_cols=65  Identities=20%  Similarity=0.310  Sum_probs=43.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEE-eCCCCCchhHHHHhhCC-CccEE
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSIIIDMTDG-GADYC  273 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv-~~~~~~~~~~i~~~~~g-~~d~v  273 (385)
                      .+|.|+|+|.+|.+.++-|+.+|+ ++++.+.+++.  -+.+.....++ ++++   ...+.++... ++|+|
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~~--PA~~va~~~i~~~~~d---~~~l~~~~~~~~~Dvi   78 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYADA--PAMHVAHRSHVINMLD---GDALRRVVELEKPHYI   78 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTTC--GGGGGSSEEEECCTTC---HHHHHHHHHHHCCSEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCCC--chhhcCCeEEECCCCC---HHHHHHHHHhhCCceE
Confidence            569999999999999999999999 89999866542  22233333332 3333   3334454433 57777

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.80  E-value=0.041  Score=44.87  Aligned_cols=103  Identities=14%  Similarity=0.080  Sum_probs=66.0

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhCCCc
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      ....+++|++||=+|+|. |..+..+++..+-.+|++++.+++.++.+++    .+....+..+. ..... .......+
T Consensus        50 ~~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~-~~~~~-~~~~~~~v  126 (209)
T d1nt2a_          50 HRLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA-SKPWK-YSGIVEKV  126 (209)
T ss_dssp             CCCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT-TCGGG-TTTTCCCE
T ss_pred             ccCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeec-cCccc-cccccceE
Confidence            346799999999999866 6678888887765589999999988876653    33222222211 11110 11111257


Q ss_pred             cEEEEccCCh----HHHHHHHHHhccCCceEEEec
Q 016660          271 DYCFECVGLA----SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       271 d~vid~~g~~----~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      |+++......    ..+.++.+.|+++ |+++..-
T Consensus       127 d~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  160 (209)
T d1nt2a_         127 DLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIMV  160 (209)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             EEEEecccChhhHHHHHHHHHHHhccC-CeEEEEE
Confidence            7776544322    3467888999997 9987653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.76  E-value=0.027  Score=47.01  Aligned_cols=96  Identities=18%  Similarity=0.324  Sum_probs=65.2

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc----CCC-eEEeCCCCCchhHHHHhh-
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT-EFVNSKNCGDKSIIIDMT-  266 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~-~vv~~~~~~~~~~i~~~~-  266 (385)
                      ++......+..+||=+|+|. |..+..+++ .|+ +|++++.+++-++.+++.    +.. .++. .+      +..+. 
T Consensus        33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~-~d------~~~l~~  102 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQ-GD------VLEIAF  102 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEE-SC------GGGCCC
T ss_pred             HHHHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchhee-hh------hhhccc
Confidence            34445667778999999876 777777777 588 899999999888877653    322 2222 11      12222 


Q ss_pred             CCCccEEEEccCC---------hHHHHHHHHHhccCCceEEE
Q 016660          267 DGGADYCFECVGL---------ASLVQEAYACCRKGWGKTIV  299 (385)
Q Consensus       267 ~g~~d~vid~~g~---------~~~~~~~~~~l~~~~G~~v~  299 (385)
                      ++.||+|+...+.         ...++.+.++|+++ |.++.
T Consensus       103 ~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg-G~lii  143 (251)
T d1wzna1         103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG-GVFIT  143 (251)
T ss_dssp             CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC-cEEEE
Confidence            2379998865432         13477899999997 98875

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.75  E-value=0.015  Score=50.62  Aligned_cols=101  Identities=20%  Similarity=0.244  Sum_probs=65.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc---------hHHH----HHHHcCCCeEEeCCCCCchhH-HHHh
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS---------EKFE----IGKRFGVTEFVNSKNCGDKSI-IIDM  265 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~---------~~~~----~~~~lg~~~vv~~~~~~~~~~-i~~~  265 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|++++++.         +..+    .....+.....+..+....+. +...
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   84 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA   84 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH
Confidence            5788999997 9999999999999999 898886543         2222    222344455566665333333 3222


Q ss_pred             h--CCCccEEEEccCCh-------------------------HHHHHHHHHhcc-CCceEEEecc
Q 016660          266 T--DGGADYCFECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGV  302 (385)
Q Consensus       266 ~--~g~~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~  302 (385)
                      .  -|++|++|+++|..                         ...+.++..|++ ++|++|.++.
T Consensus        85 ~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS  149 (302)
T d1gz6a_          85 LDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTAS  149 (302)
T ss_dssp             HHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             HHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCC
Confidence            2  24799999998851                         123445555532 2489998875

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.023  Score=45.20  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .....+|+|+|+|+.|+.|+..|...|+ +|+..+..+
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            4556889999999999999999999999 899998764

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.71  E-value=0.012  Score=49.75  Aligned_cols=78  Identities=12%  Similarity=0.028  Sum_probs=47.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeE--EeCCCCCchhH----HHHhhC--
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF--VNSKNCGDKSI----IIDMTD--  267 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~v--v~~~~~~~~~~----i~~~~~--  267 (385)
                      +|++|||.|+ +++|...+..+...|+ +|+++.+..++.+.+.+    .+-..+  +..+.....+.    +.+...  
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            5889999987 9999999999999999 56666555554443332    222221  22121112221    222222  


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      |++|++++++|.
T Consensus        83 g~iDilvnnAG~   94 (254)
T d1sbya1          83 KTVDILINGAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEeCCCC
Confidence            379999999986

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.63  E-value=0.047  Score=45.26  Aligned_cols=100  Identities=12%  Similarity=0.126  Sum_probs=65.4

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC----CeEEeCCCCCchhHHHHhhCC--
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV----TEFVNSKNCGDKSIIIDMTDG--  268 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~----~~vv~~~~~~~~~~i~~~~~g--  268 (385)
                      +...+++|++||=+|+|. |..+..+|+...-..|++++.+++.++.+++.-.    ...+.......    ......  
T Consensus        68 ~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~----~~~~~~~~  142 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP----QEYANIVE  142 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCG----GGGTTTCC
T ss_pred             HhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccC----cccccccc
Confidence            456789999999999866 7788888886544489999999998887776422    12222222111    112222  


Q ss_pred             CccEEEEccCC----hHHHHHHHHHhccCCceEEEe
Q 016660          269 GADYCFECVGL----ASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       269 ~~d~vid~~g~----~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      .+|+++.....    ...+..+.+.|+++ |.++..
T Consensus       143 ~v~~i~~~~~~~~~~~~~l~~~~r~LKpg-G~~~i~  177 (230)
T d1g8sa_         143 KVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA  177 (230)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             eeEEeeccccchHHHHHHHHHHHHhcccC-ceEEEE
Confidence            45666665442    23367888899997 987765

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.018  Score=47.77  Aligned_cols=104  Identities=13%  Similarity=0.062  Sum_probs=66.5

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC-------------eEEeCCCCCch--
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-------------EFVNSKNCGDK--  259 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-------------~vv~~~~~~~~--  259 (385)
                      ......++.+||..|+|. |..+..||+ .|+ .|+++|.|++-++.+++....             ...........  
T Consensus        39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  115 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY  115 (229)
T ss_dssp             HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence            344678899999999876 777888876 599 899999999988877653221             11100000000  


Q ss_pred             -hHHHHh---hCCCccEEEEccCC--------hHHHHHHHHHhccCCceEEEecc
Q 016660          260 -SIIIDM---TDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       260 -~~i~~~---~~g~~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                       ..+..+   ..+.+|+|+++..-        ...++.+.++|+++ |++++...
T Consensus       116 ~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg-G~~~l~~~  169 (229)
T d2bzga1         116 CCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK-FQYLLCVL  169 (229)
T ss_dssp             ESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             EcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc-ceEEEEEc
Confidence             001222   12368999986532        23467899999997 98776554

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.60  E-value=0.052  Score=41.71  Aligned_cols=83  Identities=24%  Similarity=0.195  Sum_probs=55.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-cCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASL  282 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~  282 (385)
                      +|.++|+|.+|.+.++-+...|..+|++.++++++.+.+.+ +|+. +.+..+ ..         ...|+||=++.. ..
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~-~~~~~~-~v---------~~~Div~lavkP-~~   69 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE-TSATLP-EL---------HSDDVLILAVKP-QD   69 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE-EESSCC-CC---------CTTSEEEECSCH-HH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc-cccccc-cc---------cccceEEEecCH-HH
Confidence            47889999999987774433453399999999998877654 6654 333222 01         136999988873 33


Q ss_pred             HHHHHHHhccCCceEEE
Q 016660          283 VQEAYACCRKGWGKTIV  299 (385)
Q Consensus       283 ~~~~~~~l~~~~G~~v~  299 (385)
                      +...++-+++. ++.+.
T Consensus        70 ~~~v~~~l~~~-~~~vi   85 (152)
T d1yqga2          70 MEAACKNIRTN-GALVL   85 (152)
T ss_dssp             HHHHHTTCCCT-TCEEE
T ss_pred             HHHhHHHHhhc-ccEEe
Confidence            77777777764 55443

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.55  E-value=0.027  Score=47.53  Aligned_cols=77  Identities=17%  Similarity=0.283  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhH----HHHhh--C
Q 016660          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSI----IIDMT--D  267 (385)
Q Consensus       201 ~~~~VlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~----i~~~~--~  267 (385)
                      +|+++||.|+ |  ++|.+.++.+...|+ +|+.++++++..+.++    ..+....+..+- .....    +....  -
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~v~~~~~~~~~~~   84 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADV-TQDEELDALFAGVKEAF   84 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECCT-TCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCccccccccc-CCHHHHHHHHHHHHHhc
Confidence            6889999997 5  799999999999999 7888888876554433    234333332222 22222    11111  2


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      |+.|++++++|.
T Consensus        85 g~iDilVnnag~   96 (256)
T d1ulua_          85 GGLDYLVHAIAF   96 (256)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            479999998874

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.41  E-value=0.031  Score=45.70  Aligned_cols=94  Identities=17%  Similarity=0.230  Sum_probs=62.3

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-eEEeCCCCCchhHHHHhhCCCccE
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSIIIDMTDGGADY  272 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~vv~~~~~~~~~~i~~~~~g~~d~  272 (385)
                      .++++++||=+|+|. |..+..+++. |+ +|+++|.+++.++.+++    .+.. ..+..+...     ..+.++.||+
T Consensus        34 ~l~~~~~ILDiGcG~-G~~~~~la~~-~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~-----l~~~~~~fD~  105 (226)
T d1ve3a1          34 YMKKRGKVLDLACGV-GGFSFLLEDY-GF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-----LSFEDKTFDY  105 (226)
T ss_dssp             SCCSCCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-----CCSCTTCEEE
T ss_pred             hcCCCCEEEEECCCc-chhhhhHhhh-hc-ccccccccccchhhhhhhhcccccccccccccccc-----ccccCcCceE
Confidence            357889999999876 7778888874 77 89999999988877764    3332 222221100     1122237999


Q ss_pred             EEEccCC--------hHHHHHHHHHhccCCceEEEe
Q 016660          273 CFECVGL--------ASLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       273 vid~~g~--------~~~~~~~~~~l~~~~G~~v~~  300 (385)
                      |+-...-        ...++.+.+.|++| |++++.
T Consensus       106 I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~lii~  140 (226)
T d1ve3a1         106 VIFIDSIVHFEPLELNQVFKEVRRVLKPS-GKFIMY  140 (226)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEecchhhCChhHHHHHHHHHHHHcCcC-cEEEEE
Confidence            8754321        12477899999997 998754

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=95.30  E-value=0.12  Score=39.37  Aligned_cols=98  Identities=21%  Similarity=0.257  Sum_probs=66.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHc--CCCEEEEEcCCch---HHHHHHHcCCCeEEeCCCCCchh----------------
Q 016660          203 STVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISE---KFEIGKRFGVTEFVNSKNCGDKS----------------  260 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~--G~~~vi~~~~~~~---~~~~~~~lg~~~vv~~~~~~~~~----------------  260 (385)
                      .+|.|+|+ |.+|.-++++.+..  .+ +|+++.....   -.+.+++|....++-.++.....                
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~   81 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA   81 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCc
Confidence            67999998 99999999999875  46 7777755543   23345678887765444321111                


Q ss_pred             -HHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          261 -IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       261 -~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                       .+.+.....+|+|+.++.+...+...+.+++.  |+-+.+++.
T Consensus        82 ~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~--gk~iaLANK  123 (150)
T d1r0ka2          82 DALVEAAMMGADWTMAAIIGCAGLKATLAAIRK--GKTVALANK  123 (150)
T ss_dssp             HHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHT--TSEEEECCS
T ss_pred             cchheecccccceeeeecCchhHHHHHHHHHhc--CCEEEEecc
Confidence             02222223689999988877778889999988  455666553

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.23  E-value=0.029  Score=48.31  Aligned_cols=98  Identities=17%  Similarity=0.209  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC--------CC--eEEeCCCCCchhHHHHhhCCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--------VT--EFVNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg--------~~--~vv~~~~~~~~~~i~~~~~g~  269 (385)
                      ...++|||+|.|. |..+-.++++.+.++|.+++.+++-.+.++++-        -.  .++. .+  ....+....++.
T Consensus        79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~-~D--a~~~l~~~~~~~  154 (290)
T d1xj5a_          79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI-GD--GVAFLKNAAEGS  154 (290)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE-SC--HHHHHHTSCTTC
T ss_pred             CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE-cc--HHHHHhhccccC
Confidence            3457899998655 555667888888779999999999888888743        11  1221 11  122233333347


Q ss_pred             ccEEE-EccC---------ChHHHHHHHHHhccCCceEEEecc
Q 016660          270 ADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       270 ~d~vi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ||+|| |+..         +.+.++.+.++|+++ |.++.-..
T Consensus       155 yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~~  196 (290)
T d1xj5a_         155 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQAE  196 (290)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             ccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCC-cEEEEecC
Confidence            99885 5443         245588999999997 99887643

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=95.21  E-value=0.031  Score=48.63  Aligned_cols=75  Identities=24%  Similarity=0.347  Sum_probs=48.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC-----chHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEE
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-----SEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFE  275 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~-----~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid  275 (385)
                      .+|||+|+ |-+|...+..+...|+ +|++++.-     .++.+.+...+--.++.. +......+.+...+ ++|+||+
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~-Di~~~~~l~~~~~~~~~d~Vih   78 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHG-DIRNKNDVTRLITKYMPDSCFH   78 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEEC-CTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEc-ccCCHHHHHHHHHhcCCceEEe
Confidence            37999997 9999999999988899 89988631     123334444332233322 21223335555555 7999999


Q ss_pred             ccCC
Q 016660          276 CVGL  279 (385)
Q Consensus       276 ~~g~  279 (385)
                      ++..
T Consensus        79 ~aa~   82 (338)
T d1orra_          79 LAGQ   82 (338)
T ss_dssp             CCCC
T ss_pred             eccc
Confidence            8864

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.19  E-value=0.0025  Score=53.72  Aligned_cols=74  Identities=19%  Similarity=0.148  Sum_probs=49.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhH-HHHhhC--CCccEEEEc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSI-IIDMTD--GGADYCFEC  276 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~-i~~~~~--g~~d~vid~  276 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++.+.+..    ...|..+...... +.+...  |++|+++++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~----~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnn   80 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLFG----VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   80 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSEE----EECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCceE----EEEecCCHHHHHHHHHHHHHhcCCceEEEee
Confidence            6789999987 9999999999999999 89999888765432211    1234333222112 222222  369999999


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      +|.
T Consensus        81 AG~   83 (237)
T d1uzma1          81 AGL   83 (237)
T ss_dssp             CSC
T ss_pred             ecc
Confidence            885

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.07  E-value=0.034  Score=47.22  Aligned_cols=79  Identities=14%  Similarity=0.051  Sum_probs=49.8

Q ss_pred             CCCCEEEEEcC-C--HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH---HcCC-CeEE--eCCCCCchhH-HHHhh--C
Q 016660          200 EVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK---RFGV-TEFV--NSKNCGDKSI-IIDMT--D  267 (385)
Q Consensus       200 ~~~~~VlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~---~lg~-~~vv--~~~~~~~~~~-i~~~~--~  267 (385)
                      -+|.++||.|+ |  ++|.+.++.+...|+ +|+.++++++..+.++   +.+. ..++  +..+...... +.+..  -
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL   81 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc
Confidence            46899999986 5  799999999999999 8999988865333333   2232 2222  2222111111 22222  2


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +.+|+++.+.|.
T Consensus        82 g~id~lV~nag~   93 (274)
T d2pd4a1          82 GSLDFIVHSVAF   93 (274)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCCeEEeeccc
Confidence            478999988875

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.075  Score=47.81  Aligned_cols=106  Identities=20%  Similarity=0.293  Sum_probs=69.1

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc-----------C----CCeEEeCCCCC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-----------G----VTEFVNSKNCG  257 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-----------g----~~~vv~~~~~~  257 (385)
                      +.+..++++++++|=+|+|. |..+.++|+..|+++|++++.++...+.+++.           |    ...........
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~  286 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV  286 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred             HHHHhCCCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence            55778899999988889876 88999999999987999999998877766531           1    11121112211


Q ss_pred             chhHHHHhhCCCccEEEEc-c-CC---hHHHHHHHHHhccCCceEEEec
Q 016660          258 DKSIIIDMTDGGADYCFEC-V-GL---ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       258 ~~~~i~~~~~g~~d~vid~-~-g~---~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ......... ..+|+|+-. . -.   ...+.++.+.|++| |++|..-
T Consensus       287 ~~~~~d~~~-~~adVV~inn~~f~~~l~~~L~ei~r~LKPG-GrIVs~~  333 (406)
T d1u2za_         287 DNNRVAELI-PQCDVILVNNFLFDEDLNKKVEKILQTAKVG-CKIISLK  333 (406)
T ss_dssp             TCHHHHHHG-GGCSEEEECCTTCCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             hcccccccc-ccceEEEEecccCchHHHHHHHHHHHhcCCC-cEEEEec
Confidence            111122221 147777632 2 12   23467888899997 9998753

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.01  E-value=0.016  Score=48.94  Aligned_cols=73  Identities=14%  Similarity=0.081  Sum_probs=49.9

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC----CCeEEeCCCCCchhHHHHhhC--CCccEEEEc
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----VTEFVNSKNCGDKSIIIDMTD--GGADYCFEC  276 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg----~~~vv~~~~~~~~~~i~~~~~--g~~d~vid~  276 (385)
                      |+||.|+ +++|...++.+...|+ +|+.++++.++.+.+++++    ...+.+..+  ....+.+...  |+.|+++++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~--~~~~~~~~~~~~G~iDiLVnN   78 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE--PAELIEAVTSAYGQVDVLVSN   78 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS--HHHHHHHHHHHHSCCCEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccCCHHH--HHHHHHHHHHHcCCCCEEEEC
Confidence            7899987 9999999999999999 8999998888777666543    222333222  2222222222  469999987


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      +|.
T Consensus        79 Ag~   81 (252)
T d1zmta1          79 DIF   81 (252)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            653

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.027  Score=49.01  Aligned_cols=96  Identities=19%  Similarity=0.272  Sum_probs=54.5

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH---HHHHcCCC---eEEeCCCCCchhHHHHhhCC
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE---IGKRFGVT---EFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~---~~~~lg~~---~vv~~~~~~~~~~i~~~~~g  268 (385)
                      +.....++++||-+|+| .|.+++.+|+ .|+++|++++.++.-..   ..++.+..   .++..+-...     .+...
T Consensus        29 ~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l-----~~~~~  101 (311)
T d2fyta1          29 QNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-----HLPVE  101 (311)
T ss_dssp             HCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSCS
T ss_pred             hccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh-----cCccc
Confidence            34466789999999987 4666666666 58779999998875332   22233322   2232221111     11123


Q ss_pred             CccEEEE-ccC----Ch----HHHHHHHHHhccCCceEE
Q 016660          269 GADYCFE-CVG----LA----SLVQEAYACCRKGWGKTI  298 (385)
Q Consensus       269 ~~d~vid-~~g----~~----~~~~~~~~~l~~~~G~~v  298 (385)
                      .+|+|+. ..+    ..    ..+...-+.|+++ |+++
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~-G~ii  139 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG-GSVY  139 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEE-EEEE
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCCC-cEEe
Confidence            7999975 222    11    2123344678997 8876

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.94  E-value=0.059  Score=41.64  Aligned_cols=92  Identities=20%  Similarity=0.248  Sum_probs=67.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      +-.|.+++|.|-|-+|.-.++-++.+|+ +|++++.++-+.-.+.--|. ++..         +.+. -...|+++-++|
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA~mdGf-~v~~---------~~~a-~~~aDi~vTaTG   87 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGF-NVVT---------LDEI-VDKGDFFITCTG   87 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTC-EECC---------HHHH-TTTCSEEEECCS
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHHHhcCC-ccCc---------hhHc-cccCcEEEEcCC
Confidence            4689999999999999999999999999 99999988865433332232 2321         1111 124799999999


Q ss_pred             ChHHH-HHHHHHhccCCceEEEeccC
Q 016660          279 LASLV-QEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       279 ~~~~~-~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ....+ .+-++.|+++ ..++..|..
T Consensus        88 n~~vI~~~h~~~MKdg-aIl~N~GHf  112 (163)
T d1v8ba1          88 NVDVIKLEHLLKMKNN-AVVGNIGHF  112 (163)
T ss_dssp             SSSSBCHHHHTTCCTT-CEEEECSST
T ss_pred             CCccccHHHHHHhhCC-eEEEecccc
Confidence            98643 5778899996 777777764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.90  E-value=0.052  Score=42.20  Aligned_cols=88  Identities=17%  Similarity=0.172  Sum_probs=61.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLV  283 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~  283 (385)
                      +|-++|.|.+|...+.-+...|+ .|.+.++++++.+.+.+.++...-+         ..+.. ...|+++-|+......
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~---------~~e~~-~~~diii~~v~~~~~~   71 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGASAARS---------ARDAV-QGADVVISMLPASQHV   71 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEECSS---------HHHHH-TSCSEEEECCSCHHHH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhccccch---------hhhhc-cccCeeeecccchhhH
Confidence            68899999999988887777899 8999999999999988887653211         11111 1478888888877655


Q ss_pred             HHH-------HHHhccCCceEEEeccC
Q 016660          284 QEA-------YACCRKGWGKTIVLGVD  303 (385)
Q Consensus       284 ~~~-------~~~l~~~~G~~v~~g~~  303 (385)
                      +..       ...+.++ ..++.++..
T Consensus        72 ~~v~~~~~~~~~~l~~g-~iiid~st~   97 (162)
T d3cuma2          72 EGLYLDDDGLLAHIAPG-TLVLECSTI   97 (162)
T ss_dssp             HHHHHSTTCHHHHSCTT-CEEEECSCC
T ss_pred             HHHHhccccccccCCCC-CEEEECCCC
Confidence            544       3345554 555555543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.87  E-value=0.03  Score=48.22  Aligned_cols=99  Identities=13%  Similarity=0.092  Sum_probs=63.0

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHc----CCC-----eEEeCCCCCchhHHHHh
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT-----EFVNSKNCGDKSIIIDM  265 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~-----~vv~~~~~~~~~~i~~~  265 (385)
                      ...+.+.+.+||=+|+|. |..++.||+. |+ +|++++.+++-++.+++.    +..     ..+..-  ++...-...
T Consensus        50 ~~l~~~~~~~vLD~GcG~-G~~~~~la~~-g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  124 (292)
T d1xvaa_          50 GLLRQHGCHRVLDVACGT-GVDSIMLVEE-GF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA--NWLTLDKDV  124 (292)
T ss_dssp             HHHHHTTCCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC--CGGGHHHHS
T ss_pred             HHhhhcCCCEEEEecCCC-cHHHHHHHHc-CC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeec--ccccccccc
Confidence            334455678899998866 7778888875 88 899999999988777542    211     111111  121111222


Q ss_pred             hCC-CccEEEEccCC--------------hHHHHHHHHHhccCCceEEE
Q 016660          266 TDG-GADYCFECVGL--------------ASLVQEAYACCRKGWGKTIV  299 (385)
Q Consensus       266 ~~g-~~d~vid~~g~--------------~~~~~~~~~~l~~~~G~~v~  299 (385)
                      ..+ .||.|+.....              ...++.+.+.|+++ |.+++
T Consensus       125 ~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~  172 (292)
T d1xvaa_         125 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG-GLLVI  172 (292)
T ss_dssp             CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE-EEEEE
T ss_pred             CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC-cEEEE
Confidence            223 79999864322              12588999999997 98876

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.84  E-value=0.025  Score=50.87  Aligned_cols=31  Identities=32%  Similarity=0.302  Sum_probs=27.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~  233 (385)
                      |.+|||+|+ |-+|...+..+...|+ .|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            578999997 9999999999999999 899986

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.77  E-value=0.093  Score=36.82  Aligned_cols=72  Identities=18%  Similarity=0.226  Sum_probs=50.0

Q ss_pred             CCCCCEEEEEcCCHHHHHH-HHHHHHcCCCEEEEEcCCc-hHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEc
Q 016660          199 VEVGSTVVIFGLGSIGLAV-AEGARLCGATRIIGVDVIS-EKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFEC  276 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~a-i~la~~~G~~~vi~~~~~~-~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~  276 (385)
                      .....++.++|-|++|+.+ +++++..|+ .|.+.|... ...+.+++.|+.....+.. ..   +     .++|+|+-.
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~-~~---i-----~~~d~vV~S   74 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHAE-EH---I-----EGASVVVVS   74 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCCG-GG---G-----TTCSEEEEC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCcc-cc---C-----CCCCEEEEC
Confidence            4567889999998889887 799999999 999999763 3455667788863332222 11   1     147888766


Q ss_pred             cCCh
Q 016660          277 VGLA  280 (385)
Q Consensus       277 ~g~~  280 (385)
                      .+-+
T Consensus        75 ~AI~   78 (96)
T d1p3da1          75 SAIK   78 (96)
T ss_dssp             TTSC
T ss_pred             CCcC
Confidence            5543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.72  E-value=0.033  Score=41.17  Aligned_cols=38  Identities=32%  Similarity=0.441  Sum_probs=33.2

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .+.++.+++|+|+|.+|.=++..++..|. +|..+++++
T Consensus        26 ~~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~   63 (121)
T d1d7ya2          26 GLRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQP   63 (121)
T ss_dssp             HCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             hhhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeecc
Confidence            35678999999999999999999999999 888887765

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.68  E-value=0.039  Score=42.52  Aligned_cols=85  Identities=13%  Similarity=0.129  Sum_probs=60.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH-HHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASL  282 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~  282 (385)
                      +|.++|+|.+|.+.+.-+...|. .+++.+++.++.+.+ +++|+..+-+      ...+.+    ..|+||=|+.... 
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~~~------~~~~~~----~~dvIilavkp~~-   69 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYAMS------HQDLID----QVDLVILGIKPQL-   69 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBCSS------HHHHHH----TCSEEEECSCGGG-
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeeech------hhhhhh----ccceeeeecchHh-
Confidence            47889999999988876667787 899999988877664 5677653311      111212    4799998886444 


Q ss_pred             HHHHHHHhccCCceEEEec
Q 016660          283 VQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       283 ~~~~~~~l~~~~G~~v~~g  301 (385)
                      +.+.++.++++ ..++.+.
T Consensus        70 ~~~vl~~l~~~-~~iis~~   87 (152)
T d2ahra2          70 FETVLKPLHFK-QPIISMA   87 (152)
T ss_dssp             HHHHHTTSCCC-SCEEECC
T ss_pred             HHHHhhhcccc-eeEeccc
Confidence            77888888885 6666554

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.68  E-value=0.1  Score=39.78  Aligned_cols=43  Identities=14%  Similarity=0.100  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--CchHHHHHH
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGK  243 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~  243 (385)
                      -.|.+|||+|+|.+|.--+..+...|+ +|++++.  +++-.+++.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~~~~   55 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFG   55 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTTHHHHHC
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCHHHHHHHH
Confidence            468899999999999999999999999 7777743  344444443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.65  E-value=0.024  Score=49.54  Aligned_cols=94  Identities=16%  Similarity=0.185  Sum_probs=55.2

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHH---HHHcCCC---eEEeCCCCCchhHHHHhhCCCc
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI---GKRFGVT---EFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~---~~~lg~~---~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      ..+.+|++||-+|+|. |.+++.+|+ .|+++|++++.++.-...   .+..+..   .++..+..+.     .+..+.+
T Consensus        29 ~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~-----~~~~~~~  101 (316)
T d1oria_          29 RHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-----ELPVEKV  101 (316)
T ss_dssp             HHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC-----CCSSSCE
T ss_pred             cccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHc-----cccccee
Confidence            4466899999999875 777776666 687799999987642221   2223332   2222222111     1112378


Q ss_pred             cEEEEc-cCC--------hHHHHHHHHHhccCCceEE
Q 016660          271 DYCFEC-VGL--------ASLVQEAYACCRKGWGKTI  298 (385)
Q Consensus       271 d~vid~-~g~--------~~~~~~~~~~l~~~~G~~v  298 (385)
                      |+|+.. .+.        +..+....+.|+++ |+++
T Consensus       102 D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~-G~ii  137 (316)
T d1oria_         102 DIIISEWMGYCLFYESMLNTVLHARDKWLAPD-GLIF  137 (316)
T ss_dssp             EEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             EEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC-eEEE
Confidence            998752 221        23345667899997 9876

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.63  E-value=0.21  Score=37.98  Aligned_cols=93  Identities=14%  Similarity=0.008  Sum_probs=61.2

Q ss_pred             CEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhH-HHHhhCC--CccEEEEccC
Q 016660          203 STVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSI-IIDMTDG--GADYCFECVG  278 (385)
Q Consensus       203 ~~VlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~-i~~~~~g--~~d~vid~~g  278 (385)
                      .+|.|+| .|.+|...+..++..|+ .|.+.+++++........+++.++.......... +....+.  .=.+++|+.+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD~~S   88 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLTS   88 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECCS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccchhhheeeeecccccccCCceEEEecc
Confidence            5799999 69999999999999999 8999998887766666667777666555222222 3333322  2248889887


Q ss_pred             ChHHHHHHHHHhccCCceEE
Q 016660          279 LASLVQEAYACCRKGWGKTI  298 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v  298 (385)
                      ......+.+....+  .+++
T Consensus        89 vk~~~~~~~~~~~~--~~~v  106 (152)
T d2pv7a2          89 VKREPLAKMLEVHT--GAVL  106 (152)
T ss_dssp             CCHHHHHHHHHHCS--SEEE
T ss_pred             cCHHHHHHHHHHcc--CCEE
Confidence            66544444443333  3444

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.17  Score=44.12  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH-----------cCCC----eEEeCCCCC
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----------FGVT----EFVNSKNCG  257 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-----------lg~~----~vv~~~~~~  257 (385)
                      +.+..+++++++||=+|+|. |..+.++|+..++.++++++.+++..+.+++           +|..    .++..+- .
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~-~  220 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF-L  220 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT-T
T ss_pred             HHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc-c
Confidence            55778899999999999876 8888899999998889999999987766543           2221    1222211 1


Q ss_pred             chhHHHHhhCCCccEEEEc-c-CCh---HHHHHHHHHhccCCceEEEec
Q 016660          258 DKSIIIDMTDGGADYCFEC-V-GLA---SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       258 ~~~~i~~~~~g~~d~vid~-~-g~~---~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ..+......  .+|+|+-. . -.+   ..+.++.+.|++| |++|..-
T Consensus       221 ~~~~~~~~~--~advi~~~~~~f~~~~~~~l~e~~r~LKpG-g~iv~~~  266 (328)
T d1nw3a_         221 SEEWRERIA--NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSK  266 (328)
T ss_dssp             SHHHHHHHH--HCSEEEECCTTTCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             ccccccccC--cceEEEEcceecchHHHHHHHHHHHhCCCC-cEEEEec
Confidence            111111111  26788732 1 112   3467788889997 9998764

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=94.62  E-value=0.15  Score=39.35  Aligned_cols=93  Identities=20%  Similarity=0.278  Sum_probs=55.0

Q ss_pred             CEEEEEcCCHHHH-HHHHHHHHcCCCEEEEEc-CCc--hHHHHHHHcCCCeEEeCCCCCchhHHHHhhC-CCccEEEEcc
Q 016660          203 STVVIFGLGSIGL-AVAEGARLCGATRIIGVD-VIS--EKFEIGKRFGVTEFVNSKNCGDKSIIIDMTD-GGADYCFECV  277 (385)
Q Consensus       203 ~~VlI~G~g~vG~-~ai~la~~~G~~~vi~~~-~~~--~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~-g~~d~vid~~  277 (385)
                      =+|.|+|+|.+|. +.+++++....-.++++. ++.  ....+++++|......     ....+.+... .++|+||+++
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~-----~~d~l~~~~~~~~iDiVf~AT   79 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYA-----GVEGLIKLPEFADIDFVFDAT   79 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESS-----HHHHHHHSGGGGGEEEEEECS
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCccccc-----ceeeeeecccccccCEEEEcC
Confidence            3689999999986 567888765433666664 343  3456788888763321     1111222222 2699999998


Q ss_pred             CChHHHHH--HHHHhccCCceEEEec
Q 016660          278 GLASLVQE--AYACCRKGWGKTIVLG  301 (385)
Q Consensus       278 g~~~~~~~--~~~~l~~~~G~~v~~g  301 (385)
                      +.....+.  +.+.++.| -.++...
T Consensus        80 pag~h~~~~~~~~aa~~G-~~VID~s  104 (157)
T d1nvmb1          80 SASAHVQNEALLRQAKPG-IRLIDLT  104 (157)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CEEEECS
T ss_pred             CchhHHHhHHHHHHHHcC-CEEEEcc
Confidence            86544543  34446653 4454444

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=94.58  E-value=0.094  Score=41.45  Aligned_cols=136  Identities=11%  Similarity=0.028  Sum_probs=76.9

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHcCCC-EEE-EEcCCchHHHH-HHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccC
Q 016660          204 TVVIFGLGSIGLA-VAEGARLCGAT-RII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG  278 (385)
Q Consensus       204 ~VlI~G~g~vG~~-ai~la~~~G~~-~vi-~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g  278 (385)
                      +|.|+|+|.+|.- .+..++..+-. +++ ++++++++.+. .++++...+++  +      +.++... .+|+|+-++.
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~--~------~~ell~~~~id~v~I~tp   76 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD--S------YEELLESGLVDAVDLTLP   76 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES--C------HHHHHHSSCCSEEEECCC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceee--e------eeccccccccceeecccc
Confidence            5889999999964 56666655422 455 45666666554 55677765542  2      2333333 7999999998


Q ss_pred             ChHHHHHHHHHhccCCceEEEeccCCCCCccc-ccHHHHhh-cCcEE-EEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVLH-SGKIL-MGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~~-~~~~i-~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      .....+.+..++..  |+-|++.......... .....+.. ++..+ .+.......+...+.++.+++++|++
T Consensus        77 ~~~h~~~~~~al~~--gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~i  148 (181)
T d1zh8a1          77 VELNLPFIEKALRK--GVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKP  148 (181)
T ss_dssp             GGGHHHHHHHHHHT--TCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred             cccccccccccccc--chhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCCC
Confidence            88768888888887  5666664322111001 11112222 23333 22211110012457778888999865

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.58  E-value=0.015  Score=46.64  Aligned_cols=36  Identities=14%  Similarity=0.174  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      +++|+|+|+|+.|+.++..++..|++.|+++++++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            578999999999999999999999955888877654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.57  E-value=0.25  Score=38.64  Aligned_cols=96  Identities=19%  Similarity=0.178  Sum_probs=62.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCEEEEE-cCC-chHHHHHHHcCCCeEEeCCCCCchh----------HHHHhhCCCc
Q 016660          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGV-DVI-SEKFEIGKRFGVTEFVNSKNCGDKS----------IIIDMTDGGA  270 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~-G~~~vi~~-~~~-~~~~~~~~~lg~~~vv~~~~~~~~~----------~i~~~~~g~~  270 (385)
                      +|.|.|.|-+|...+..+... .. .++++ +.+ ......+.+.+.+......+ ....          .+.+.. .++
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~di-eiVaINd~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~v   80 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDM-ELIGITKTKPDFEAYRAKELGIPVYAASEE-FIPRFEKEGFEVAGTLNDLL-EKV   80 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEEESSCSHHHHHHHHTTCCEEESSGG-GHHHHHHHTCCCSCBHHHHH-TTC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-eEEEEecCCChHHHHHhhhcCceeeccccc-ceeeecccCccccchhhhhh-ccC
Confidence            689999999999888877644 35 55555 333 34455666666543321111 0000          011111 269


Q ss_pred             cEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          271 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       271 d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      |+|+||+|.-...+.+-..+..| -+.|.++..
T Consensus        81 DvViEcTG~f~~~~~~~~hl~~G-~k~Vi~s~~  112 (172)
T d2czca2          81 DIIVDATPGGIGAKNKPLYEKAG-VKAIFQGGE  112 (172)
T ss_dssp             SEEEECCSTTHHHHHHHHHHHHT-CEEEECTTS
T ss_pred             CEEEECCCCCCCHHHHHHHHHcC-CCEEEECCC
Confidence            99999999988888999999997 888888864

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.56  E-value=0.13  Score=41.25  Aligned_cols=87  Identities=17%  Similarity=0.113  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .|.+|.|+|.|.+|...+++++.+|+ +|++.+...+.....  .+.    ...+  ..+ +..    ..|+|+-++...
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~~~~~~--~~~----~~~~--l~~-~l~----~sDii~~~~plt  107 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPELEK--KGY----YVDS--LDD-LYK----QADVISLHVPDV  107 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHH--TTC----BCSC--HHH-HHH----HCSEEEECSCCC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCccccccccc--cee----eecc--ccc-ccc----ccccccccCCcc
Confidence            58899999999999999999999999 899998665433222  121    1111  211 222    268888776532


Q ss_pred             -HH---H-HHHHHHhccCCceEEEecc
Q 016660          281 -SL---V-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       281 -~~---~-~~~~~~l~~~~G~~v~~g~  302 (385)
                       .+   + .+.++.|+++ ..+|.++-
T Consensus       108 ~~T~~li~~~~l~~mk~~-a~lIN~sR  133 (197)
T d1j4aa1         108 PANVHMINDESIAKMKQD-VVIVNVSR  133 (197)
T ss_dssp             GGGTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred             ccccccccHHHHhhhCCc-cEEEecCc
Confidence             11   2 4677888886 77777753

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=94.51  E-value=0.12  Score=40.24  Aligned_cols=133  Identities=12%  Similarity=0.071  Sum_probs=76.8

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHc-CCCEEEEEcCCchHHHH-HHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          204 TVVIFGLGSIGLA-VAEGARLC-GATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       204 ~VlI~G~g~vG~~-ai~la~~~-G~~~vi~~~~~~~~~~~-~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      +|.|+|+|.+|.- .+..++.. ++ .+++++.++++.+. .++++...+++.    +.    ++.+..+|+|+-+++..
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~----~ll~~~iD~V~I~tp~~   73 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCTD----YR----DVLQYGVDAVMIHAATD   73 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCSS----TT----GGGGGCCSEEEECSCGG
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhccccccccc----HH----Hhcccccceeccccccc
Confidence            5789999999964 56566544 55 67778888777665 455776544322    11    12222689999999988


Q ss_pred             HHHHHHHHHhccCCceEEEeccCCCCCc-ccccHHHHhh-cCcEEEEeeecCCCCCCcHHHHHHHHHcCCCC
Q 016660          281 SLVQEAYACCRKGWGKTIVLGVDQPGSQ-LSLSSFEVLH-SGKILMGSLFGGLKAKSDIPILLKRYMDKELE  350 (385)
Q Consensus       281 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~  350 (385)
                      ...+.+..++..+  .-|++........ ....+..+.. ++..+.-.. .  .....+.++++.+..|++.
T Consensus        74 ~H~~~~~~al~~g--k~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~-~--r~~~~~~~~~~~~~~G~ig  140 (167)
T d1xeaa1          74 VHSTLAAFFLHLG--IPTFVDKPLAASAQECENLYELAEKHHQPLYVGF-N--GFDAMVQDWLQVAAAGKLP  140 (167)
T ss_dssp             GHHHHHHHHHHTT--CCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEEC-G--THHHHHHHHHHHHHHTCCC
T ss_pred             ccccccccccccc--cccccCCCCcCCHHHHHHHHHHHHHcCCEEEEEe-C--cCCHHHHHHHHHhhcCCCC
Confidence            8788889999884  4455543221110 0111222222 344332221 1  1123466777878888653

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.51  E-value=0.056  Score=45.07  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=61.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCC------EEEEEcCCchHHHHHH----HcCCCeE---EeCCCCCchhH-HHHhh--
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGAT------RIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSI-IIDMT--  266 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~------~vi~~~~~~~~~~~~~----~lg~~~v---v~~~~~~~~~~-i~~~~--  266 (385)
                      .|||.|+ +++|.+.+..+...|++      .|+.+++++++++.+.    +.|....   .|..+...... +.+..  
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER   82 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4788887 99999998888888884      3888888888766443    3454322   23333211111 22221  


Q ss_pred             CCCccEEEEccCCh-------------------------HHHHHHHHHhcc-CCceEEEeccC
Q 016660          267 DGGADYCFECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGVD  303 (385)
Q Consensus       267 ~g~~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~  303 (385)
                      -|.+|++++++|..                         ...+.++..|++ ++|+++.++..
T Consensus        83 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~  145 (240)
T d2bd0a1          83 YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSV  145 (240)
T ss_dssp             TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEech
Confidence            24799999998851                         123445556633 23899988754

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.49  E-value=0.049  Score=45.56  Aligned_cols=76  Identities=13%  Similarity=0.209  Sum_probs=48.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHH---HcCCCEEEEEcCCchHHHHHHHc---CCC-eE--EeCCCCCchhH-HH---HhhC-
Q 016660          203 STVVIFGL-GSIGLAVAEGAR---LCGATRIIGVDVISEKFEIGKRF---GVT-EF--VNSKNCGDKSI-II---DMTD-  267 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~---~~G~~~vi~~~~~~~~~~~~~~l---g~~-~v--v~~~~~~~~~~-i~---~~~~-  267 (385)
                      .+|||.|+ +++|...++.+.   ..|+ +|+.+.+++++.+.++++   +.. .+  +|..+...... +.   .... 
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   81 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKD   81 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhc
Confidence            47999997 999999776553   3578 899999998876655432   222 22  34444222222 22   2223 


Q ss_pred             CCccEEEEccCC
Q 016660          268 GGADYCFECVGL  279 (385)
Q Consensus       268 g~~d~vid~~g~  279 (385)
                      +++|+++++.|.
T Consensus        82 ~~iDiLvnNAg~   93 (248)
T d1snya_          82 QGLNVLFNNAGI   93 (248)
T ss_dssp             GCCSEEEECCCC
T ss_pred             CCcceEEeeccc
Confidence            379999998874

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.099  Score=43.74  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=51.4

Q ss_pred             CCCCCEEEEEcC-C--HHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhH---HHHhhC-
Q 016660          199 VEVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSI---IIDMTD-  267 (385)
Q Consensus       199 ~~~~~~VlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~---i~~~~~-  267 (385)
                      .-+|+++||+|+ |  ++|.+.+..+...|+ +|+.++++++..+.+++    .+....+..+..+....   ...... 
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV   80 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhc
Confidence            347899999987 6  688889899999999 78888888776554433    44443333333222221   222222 


Q ss_pred             -CCccEEEEccCC
Q 016660          268 -GGADYCFECVGL  279 (385)
Q Consensus       268 -g~~d~vid~~g~  279 (385)
                       +..|+++++++.
T Consensus        81 ~~~~d~~v~~a~~   93 (258)
T d1qsga_          81 WPKFDGFVHSIGF   93 (258)
T ss_dssp             CSSEEEEEECCCC
T ss_pred             ccccceEEEeecc
Confidence             268999988754

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.03  Score=46.94  Aligned_cols=47  Identities=32%  Similarity=0.314  Sum_probs=39.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH-HHHHcCCC
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVT  248 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~  248 (385)
                      +|.++||.|+ +++|.+.++.+...|+ +|+.+++++++.+ ..++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCC
Confidence            6889999987 9999999999999999 8999998877665 44556654

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.45  E-value=0.049  Score=46.02  Aligned_cols=94  Identities=18%  Similarity=0.094  Sum_probs=61.1

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC---eEEeCCCCCchhHHHHhhCC-C
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSIIIDMTDG-G  269 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vv~~~~~~~~~~i~~~~~g-~  269 (385)
                      .+++|++||-.|+|. |.+++.+|+.-+. +|++++.+++..+++++    .|..   .++..+.       +.+... .
T Consensus       104 ~~~~g~~VlD~~aG~-G~~~l~~a~~~~~-~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~-------~~~~~~~~  174 (260)
T d2frna1         104 VAKPDELVVDMFAGI-GHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN-------RDFPGENI  174 (260)
T ss_dssp             HCCTTCEEEETTCTT-TTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT-------TTCCCCSC
T ss_pred             hcCCccEEEECcceE-cHHHHHHHHhCCc-EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch-------HHhccCCC
Confidence            468999999987643 5555666765444 89999999998887763    3442   2333322       223333 6


Q ss_pred             ccEEE-Ec-cCChHHHHHHHHHhccCCceEEEec
Q 016660          270 ADYCF-EC-VGLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       270 ~d~vi-d~-~g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +|.|+ +. ..+...+..+++.++++ |.+.+..
T Consensus       175 ~D~Ii~~~p~~~~~~l~~a~~~l~~g-G~lh~~~  207 (260)
T d2frna1         175 ADRILMGYVVRTHEFIPKALSIAKDG-AIIHYHN  207 (260)
T ss_dssp             EEEEEECCCSSGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred             CCEEEECCCCchHHHHHHHHhhcCCC-CEEEEEe
Confidence            88665 33 34456688899999996 8776554

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.45  E-value=0.075  Score=43.31  Aligned_cols=73  Identities=16%  Similarity=0.047  Sum_probs=47.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      .+|||.|+ |.+|...+..+...|.+ .|+.+.+++++.+.+.. +.. ++..+- .....+.+... ++|.|+++++.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~-~~~~d~-~~~~~~~~~~~-~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EAD-VFIGDI-TDADSINPAFQ-GIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTT-EEECCT-TSHHHHHHHHT-TCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcE-EEEeee-ccccccccccc-cceeeEEEEee
Confidence            58999997 99999999999988863 56667777766554332 233 222222 22333444433 58999998764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.43  E-value=0.16  Score=35.00  Aligned_cols=67  Identities=18%  Similarity=0.293  Sum_probs=46.8

Q ss_pred             EEEEEcCCHHHHHH-HHHHHHcCCCEEEEEcCCc-hHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          204 TVVIFGLGSIGLAV-AEGARLCGATRIIGVDVIS-EKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       204 ~VlI~G~g~vG~~a-i~la~~~G~~~vi~~~~~~-~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      +|-++|-|++|+.+ +++++..|+ .|.+.|..+ +..+.++++|+......+....         .++|+|+-...-+
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i---------~~~d~vV~SsAI~   71 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFVPHSADNW---------YDPDLVIKTPAVR   71 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEESSCCTTSC---------CCCSEEEECTTCC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEeeeccccc---------CCCCEEEEecCcC
Confidence            57778988889865 688889999 999999876 4566788999864333222111         1478887665543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.048  Score=47.78  Aligned_cols=75  Identities=17%  Similarity=0.235  Sum_probs=46.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC----CchHHHHHHHcCCCeE-EeCCCCCchhHHHHhhCC-CccEEEEc
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDV----ISEKFEIGKRFGVTEF-VNSKNCGDKSIIIDMTDG-GADYCFEC  276 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~----~~~~~~~~~~lg~~~v-v~~~~~~~~~~i~~~~~g-~~d~vid~  276 (385)
                      +|||+|+ |-+|...+..+...|+ .|+++++    ........+.+..+++ +-..+......+.+.... ++|+||++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl   80 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence            4899987 9999999999999999 8888864    2222333333222211 111222233335554444 79999998


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      ++.
T Consensus        81 Aa~   83 (338)
T d1udca_          81 AGL   83 (338)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            753

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=94.39  E-value=0.058  Score=45.95  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC-----C---C--eEEeCCCCCchhHHHHhhCCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-----V---T--EFVNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg-----~---~--~vv~~~~~~~~~~i~~~~~g~  269 (385)
                      ...++|||+|+|. |..+-.++++.+.++|.+++.+++-.+.++++-     +   .  .++.. +  ....++ .++..
T Consensus        74 ~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~-D--~~~~l~-~~~~~  148 (274)
T d1iy9a_          74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD-D--GFMHIA-KSENQ  148 (274)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES-C--SHHHHH-TCCSC
T ss_pred             CCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEec-h--HHHHHh-hcCCC
Confidence            4567899998765 556777788888779999999999888887642     2   1  12221 1  222232 23348


Q ss_pred             ccEEE-EccC---------ChHHHHHHHHHhccCCceEEEec
Q 016660          270 ADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       270 ~d~vi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +|+|| |...         +.+..+.+.++|+++ |.++.-+
T Consensus       149 yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~-Gv~v~q~  189 (274)
T d1iy9a_         149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT  189 (274)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC-ceEEEec
Confidence            99996 4332         346588999999997 9988654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.34  E-value=0.085  Score=44.39  Aligned_cols=81  Identities=16%  Similarity=0.247  Sum_probs=51.9

Q ss_pred             cCCCCCEEEEEcC-C--HHHHHHHHHHHHcCCCEEEEEcCCchHH-H-HHHHcCCCe---EEeCCCCCchhH----HHHh
Q 016660          198 NVEVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKF-E-IGKRFGVTE---FVNSKNCGDKSI----IIDM  265 (385)
Q Consensus       198 ~~~~~~~VlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~~~~-~-~~~~lg~~~---vv~~~~~~~~~~----i~~~  265 (385)
                      ++-+|.++||.|+ |  ++|.+.++.+...|+ +|+.+.++.++. + ..++++...   ..|..+......    +.+.
T Consensus         2 ~~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~   80 (268)
T d2h7ma1           2 GLLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEA   80 (268)
T ss_dssp             CTTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhc
Confidence            3457889999985 4  599999999999999 888888877764 2 344566432   223333111111    2332


Q ss_pred             hCC--CccEEEEccCC
Q 016660          266 TDG--GADYCFECVGL  279 (385)
Q Consensus       266 ~~g--~~d~vid~~g~  279 (385)
                      ...  ..|++++++|.
T Consensus        81 ~~~~~~ld~~i~~ag~   96 (268)
T d2h7ma1          81 IGAGNKLDGVVHSIGF   96 (268)
T ss_dssp             HCTTCCEEEEEECCCC
T ss_pred             cccCCCcceeeecccc
Confidence            322  68999998873

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.019  Score=38.76  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=30.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      .+|.|+|+|.+|.+.++-++.+|+ ++++.+.+++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCC
Confidence            478999999999999999999999 8888876544

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.33  E-value=0.27  Score=38.60  Aligned_cols=96  Identities=19%  Similarity=0.209  Sum_probs=57.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCEEEEE-cCCch-HHHHHHHcCCCeEEeCCCC--------CchhHHHHhhCCCccE
Q 016660          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGV-DVISE-KFEIGKRFGVTEFVNSKNC--------GDKSIIIDMTDGGADY  272 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~-G~~~vi~~-~~~~~-~~~~~~~lg~~~vv~~~~~--------~~~~~i~~~~~g~~d~  272 (385)
                      +|.|.|.|-+|..+++.+... .. .++++ +..+. ....+...+.......+..        .....+.+.. .++|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~-~~vDi   80 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI-KTSDI   80 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH-HHCSE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh-hcCCE
Confidence            588999999999999998865 46 66666 33332 3333333343221111110        0000011111 14899


Q ss_pred             EEEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          273 CFECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       273 vid~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      |+||+|.-...+.+-.++..+ -+++..+.
T Consensus        81 ViecTG~f~~~e~a~~hl~~G-~KvIi~~~  109 (178)
T d1b7go1          81 VVDTTPNGVGAQYKPIYLQLQ-RNAIFQGG  109 (178)
T ss_dssp             EEECCSTTHHHHHHHHHHHTT-CEEEECTT
T ss_pred             EEECCCCcCCHHHHHHHHHcC-CEEEEECC
Confidence            999999987788888888886 67777654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.31  E-value=0.084  Score=42.29  Aligned_cols=92  Identities=17%  Similarity=0.263  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeE-EeCCCCCchhHHHHh-hCCCccEEE
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF-VNSKNCGDKSIIIDM-TDGGADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~v-v~~~~~~~~~~i~~~-~~g~~d~vi  274 (385)
                      ++.+||=+|+| .|..+..+++ .|+ +|++++.+++.++.+++    .+.+.+ +...+      +..+ ..+.||+|+
T Consensus        30 ~~grvLDiGcG-~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d------~~~~~~~~~fD~I~  100 (198)
T d2i6ga1          30 APGRTLDLGCG-NGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVD------LNTLTFDGEYDFIL  100 (198)
T ss_dssp             CSCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECC------TTTCCCCCCEEEEE
T ss_pred             CCCcEEEECCC-CCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhccccchhhhhee------cccccccccccEEE
Confidence            34489999987 5777877776 588 89999999988876553    454422 11112      0111 123799998


Q ss_pred             EccC-----Ch---HHHHHHHHHhccCCceEEEecc
Q 016660          275 ECVG-----LA---SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       275 d~~g-----~~---~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ...-     ..   ..++.+.++|+++ |.++....
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~  135 (198)
T d2i6ga1         101 STVVMMFLEAQTIPGLIANMQRCTKPG-GYNLIVAA  135 (198)
T ss_dssp             EESCGGGSCTTHHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             EeeeeecCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            6331     12   3577888899997 99887654

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=94.18  E-value=0.087  Score=43.42  Aligned_cols=104  Identities=15%  Similarity=0.230  Sum_probs=67.7

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHh-----
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDM-----  265 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~-----  265 (385)
                      ..+.....+||=+|.+. |..++.+|+.+.- .+|+.++.+++..+.+++    .|...-+.....+....+.++     
T Consensus        54 L~~~~~~k~iLEiGT~~-GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~  132 (227)
T d1susa1          54 LLKLINAKNTMEIGVYT-GYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEK  132 (227)
T ss_dssp             HHHHHTCCEEEEECCGG-GHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGG
T ss_pred             HHHhcCCCcEEEecchh-hhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccc
Confidence            34556678899998743 7788888887632 299999999998877664    565432222222233334443     


Q ss_pred             hCCCccEEE-EccCCh--HHHHHHHHHhccCCceEEEec
Q 016660          266 TDGGADYCF-ECVGLA--SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       266 ~~g~~d~vi-d~~g~~--~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ..+.||+|| |+--..  ..++.+++++++| |.++.=.
T Consensus       133 ~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~g-Giii~DN  170 (227)
T d1susa1         133 NHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN  170 (227)
T ss_dssp             GTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEET
T ss_pred             cCCceeEEEeccchhhhHHHHHHHHhhcCCC-cEEEEcc
Confidence            234799995 544332  4478999999997 8877643

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.17  E-value=0.06  Score=46.91  Aligned_cols=76  Identities=16%  Similarity=0.082  Sum_probs=46.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch-----HHHHH----HHcCCCe-EEeCCCCCchhHHHHhhCC-Cc
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-----KFEIG----KRFGVTE-FVNSKNCGDKSIIIDMTDG-GA  270 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~-----~~~~~----~~lg~~~-vv~~~~~~~~~~i~~~~~g-~~  270 (385)
                      .++||+|+ |-+|...+..+...|+ .|+++++...     +...+    ....... -+...+......+...... ++
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~   80 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP   80 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence            57899998 9999999999999999 8999987432     22111    1111111 1222222233334444444 89


Q ss_pred             cEEEEccCC
Q 016660          271 DYCFECVGL  279 (385)
Q Consensus       271 d~vid~~g~  279 (385)
                      |+|+++++.
T Consensus        81 D~Vih~Aa~   89 (339)
T d1n7ha_          81 DEVYNLAAQ   89 (339)
T ss_dssp             SEEEECCSC
T ss_pred             chhhhcccc
Confidence            999999875

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.14  E-value=0.029  Score=46.96  Aligned_cols=35  Identities=17%  Similarity=0.122  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      ..++|+|+|+|+.|++++..+...|+ +|+++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            45789999999999999999999999 899998754

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.14  E-value=0.052  Score=45.19  Aligned_cols=89  Identities=15%  Similarity=0.170  Sum_probs=59.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-eEEeCCCCCchhHHHHhh-CCCccEE
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSIIIDMT-DGGADYC  273 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~vv~~~~~~~~~~i~~~~-~g~~d~v  273 (385)
                      .++.+||=+|+|. |..+..+++ .|. +|++++.|++.++.+++    .|.. .++ ..+      +..+. .+.||+|
T Consensus        36 ~~~~~vLDiGCG~-G~~~~~l~~-~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~-~~d------~~~~~~~~~fD~i  105 (246)
T d1y8ca_          36 LVFDDYLDLACGT-GNLTENLCP-KFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLA-CQD------ISNLNINRKFDLI  105 (246)
T ss_dssp             CCTTEEEEETCTT-STTHHHHGG-GSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEE-CCC------GGGCCCSCCEEEE
T ss_pred             CCCCeEEEEeCcC-CHHHHHHHH-hCC-ccEeeccchhhhhhccccccccCccceee-ccc------hhhhccccccccc
Confidence            4467899999874 667777776 477 89999999988777654    3432 222 222      22222 3379999


Q ss_pred             EEccCC------h----HHHHHHHHHhccCCceEEE
Q 016660          274 FECVGL------A----SLVQEAYACCRKGWGKTIV  299 (385)
Q Consensus       274 id~~g~------~----~~~~~~~~~l~~~~G~~v~  299 (385)
                      +...+.      .    ..++.+.++|+++ |.++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~  140 (246)
T d1y8ca_         106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEG-GVFIF  140 (246)
T ss_dssp             EECTTGGGGCCSHHHHHHHHHHHHTTEEEE-EEEEE
T ss_pred             ceeeeeeeccCCHHHHHHHHHHHHHhCCCC-eEEEE
Confidence            864332      1    2467888899997 98875

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.085  Score=44.66  Aligned_cols=95  Identities=15%  Similarity=0.121  Sum_probs=64.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      ..++.+||=+|+|. |..+..+++.. +. +++++|.+++.++.+++......+...+...    ..+.++.||+|+...
T Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~----l~~~~~sfD~v~~~~  155 (268)
T d1p91a_          82 DDKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASSHR----LPFSDTSMDAIIRIY  155 (268)
T ss_dssp             CTTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCTTS----CSBCTTCEEEEEEES
T ss_pred             CCCCCEEEEeCCCC-cHHHHHHHHHCCCC-EEEEecchHhhhhhhhcccccccceeeehhh----ccCCCCCEEEEeecC
Confidence            46778899888866 67777777765 55 8999999999888887654332121111001    112233799999654


Q ss_pred             CChHHHHHHHHHhccCCceEEEec
Q 016660          278 GLASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       278 g~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      . ...++++.+.|+++ |.++...
T Consensus       156 ~-~~~~~e~~rvLkpg-G~l~~~~  177 (268)
T d1p91a_         156 A-PCKAEELARVVKPG-GWVITAT  177 (268)
T ss_dssp             C-CCCHHHHHHHEEEE-EEEEEEE
T ss_pred             C-HHHHHHHHHHhCCC-cEEEEEe
Confidence            4 44489999999997 9988764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.03  E-value=0.076  Score=46.54  Aligned_cols=77  Identities=14%  Similarity=0.154  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH-HHHHcCC---CeEEeCCCCCchhHHHHhhCC-CccEEE
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGV---TEFVNSKNCGDKSIIIDMTDG-GADYCF  274 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~---~~vv~~~~~~~~~~i~~~~~g-~~d~vi  274 (385)
                      ++.+|||+|+ |-+|...++.+...|+ .|+++++...+.. +.+....   -+.+ ..+......+.+.... .+|+|+
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~i~~~-~~Dl~d~~~l~~~~~~~~~~~v~   84 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSE-IGDIRDQNKLLESIREFQPEIVF   84 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEE-ECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhhcccCCeEE-EeeccChHhhhhhhhhchhhhhh
Confidence            5789999997 9999999999999999 8999988665322 2222111   1111 1221223334444445 789999


Q ss_pred             EccCC
Q 016660          275 ECVGL  279 (385)
Q Consensus       275 d~~g~  279 (385)
                      .+++.
T Consensus        85 ~~aa~   89 (356)
T d1rkxa_          85 HMAAQ   89 (356)
T ss_dssp             ECCSC
T ss_pred             hhhcc
Confidence            98875

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.019  Score=44.75  Aligned_cols=89  Identities=8%  Similarity=0.085  Sum_probs=55.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe-----EEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-----FVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-----vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      +|+|+|+|.+|.+....+...|. .|..+++++++.+.....+.+.     .+....   .+   ..  +.+|++|-++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~--~~~D~iii~vk   72 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLTAND---PD---FL--ATSDLLLVTLK   72 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEEESC---HH---HH--HTCSEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCccccccccccch---hh---hh--cccceEEEeec
Confidence            58999999999998888888999 8999988876544333333211     111111   11   11  25899999998


Q ss_pred             ChHH---HHHHHHHhccCCceEEEecc
Q 016660          279 LASL---VQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       279 ~~~~---~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ....   ++.+...+.++ ..++.+.+
T Consensus        73 a~~~~~~~~~l~~~~~~~-~~Iv~~qN   98 (167)
T d1ks9a2          73 AWQVSDAVKSLASTLPVT-TPILLIHN   98 (167)
T ss_dssp             GGGHHHHHHHHHTTSCTT-SCEEEECS
T ss_pred             ccchHHHHHhhccccCcc-cEEeeccC
Confidence            7652   33334444554 55666544

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.98  E-value=0.11  Score=42.84  Aligned_cols=70  Identities=21%  Similarity=0.228  Sum_probs=50.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH-HcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      -.|.+|+|.|.|.+|..+++++...|+ +|++++.+..+...+. ..|+. .++..+         +..-..|+.+=|.-
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~-~~~~~~---------~~~~~cDIl~PcA~  105 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD-AVAPNA---------IYGVTCDIFAPCAL  105 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE-ECCGGG---------TTTCCCSEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCc-ccCCcc---------cccccccEeccccc
Confidence            478999999999999999999999999 8999988887776554 45543 222221         11125677776665


Q ss_pred             Ch
Q 016660          279 LA  280 (385)
Q Consensus       279 ~~  280 (385)
                      ..
T Consensus       106 ~~  107 (230)
T d1leha1         106 GA  107 (230)
T ss_dssp             SC
T ss_pred             cc
Confidence            44

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.83  E-value=0.071  Score=46.61  Aligned_cols=103  Identities=17%  Similarity=0.148  Sum_probs=61.4

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhh-CC-Ccc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMT-DG-GAD  271 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~-~g-~~d  271 (385)
                      .++++++||=.++|. |..++.+|+ .|+++|++++.+++.++++++    .|...-+.....+....+..+. .+ .||
T Consensus       142 ~~~~g~~VLDl~~g~-G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         142 WVQPGDRVLDVFTYT-GGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             GCCTTCEEEETTCTT-THHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hcCCCCeeecccCcc-cchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCC
Confidence            367899998876532 334444444 477799999999998887764    4542111111111222222222 33 799


Q ss_pred             EEEE-ccCC--------------hHHHHHHHHHhccCCceEEEeccC
Q 016660          272 YCFE-CVGL--------------ASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       272 ~vid-~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +|+- .-..              ...+..+.+++++| |.++++..+
T Consensus       220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG-G~lv~~s~s  265 (324)
T d2as0a2         220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-GILVTCSCS  265 (324)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-EEEEEEECC
T ss_pred             chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEEeCC
Confidence            9974 2211              12466788899997 999988654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.80  E-value=0.09  Score=46.39  Aligned_cols=76  Identities=14%  Similarity=0.114  Sum_probs=45.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch-----HHHHHHHc----CCCeEEeCCCCCchhHHHHhhCC-Ccc
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-----KFEIGKRF----GVTEFVNSKNCGDKSIIIDMTDG-GAD  271 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~-----~~~~~~~l----g~~~vv~~~~~~~~~~i~~~~~g-~~d  271 (385)
                      ..|||+|+ |-+|...+..+...|+ .|+++++...     +.+.+...    ....-+-..+......+.+...+ .+|
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            56889997 9999999999998999 8999987432     22222111    11111112222334446666666 799


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      +||++++.
T Consensus        81 ~v~h~aa~   88 (357)
T d1db3a_          81 EVYNLGAM   88 (357)
T ss_dssp             EEEECCCC
T ss_pred             EEEEeecc
Confidence            99999864

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=93.72  E-value=0.17  Score=41.30  Aligned_cols=97  Identities=20%  Similarity=0.168  Sum_probs=62.1

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHH---cCCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHhhCCCc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARL---CGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~---~G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~~~g~~  270 (385)
                      ..+++.+||=+|+|. |..+..+++.   .++ +|+++|.|++-++.+++    .+....+.....+    ...+..+.+
T Consensus        36 ~~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d----~~~~~~~~~  109 (225)
T d1im8a_          36 FVTADSNVYDLGCSR-GAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCND----IRHVEIKNA  109 (225)
T ss_dssp             HCCTTCEEEEESCTT-CHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSC----TTTCCCCSE
T ss_pred             hcCCCCEEEEeccch-hhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhccch----hhccccccc
Confidence            367899999999865 6666677764   477 99999999998888875    2322111111101    112222356


Q ss_pred             cEEEEccCC--------hHHHHHHHHHhccCCceEEEec
Q 016660          271 DYCFECVGL--------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       271 d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      |+++-+...        ...++++.+.|+++ |.+++.-
T Consensus       110 d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~li~~~  147 (225)
T d1im8a_         110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPN-GVLVLSE  147 (225)
T ss_dssp             EEEEEESCGGGSCGGGHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             eeeEEeeeccccChhhHHHHHHHHHHhCCCC-ceeeccc
Confidence            766543221        24588999999997 9998764

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.67  E-value=0.21  Score=39.33  Aligned_cols=90  Identities=20%  Similarity=0.180  Sum_probs=60.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCEEEE-EcCCchHHH-HHHHcCCCe-EEeCCCCCchhHHHHhhCC-CccEEEEccC
Q 016660          204 TVVIFGLGSIGLAVAEGARLC-GATRIIG-VDVISEKFE-IGKRFGVTE-FVNSKNCGDKSIIIDMTDG-GADYCFECVG  278 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~-G~~~vi~-~~~~~~~~~-~~~~lg~~~-vv~~~~~~~~~~i~~~~~g-~~d~vid~~g  278 (385)
                      +|.|+|.|.+|...++.++.. ++ .+++ .+.++++.+ .+++++... .-.+++      +.++... .+|+|+-+++
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~------~~~ll~~~~iD~v~I~tp   75 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANNYPESTKIHGS------YESLLEDPEIDALYVPLP   75 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCCTTCEEESS------HHHHHHCTTCCEEEECCC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccccccceeecCc------HHHhhhccccceeeeccc
Confidence            578999999999888888766 66 5664 466666644 345666431 111122      3333333 7999999999


Q ss_pred             ChHHHHHHHHHhccCCceEEEecc
Q 016660          279 LASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       279 ~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .....+.+..++..  |.=|++..
T Consensus        76 ~~~h~~~~~~~l~~--g~~v~~EK   97 (184)
T d1ydwa1          76 TSLHVEWAIKAAEK--GKHILLEK   97 (184)
T ss_dssp             GGGHHHHHHHHHTT--TCEEEECS
T ss_pred             chhhcchhhhhhhc--cceeeccc
Confidence            88878888899988  56666643

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=93.63  E-value=0.36  Score=36.66  Aligned_cols=97  Identities=24%  Similarity=0.232  Sum_probs=65.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc--CCCEEEEEcCCchH---HHHHHHcCCCeEEeCCCCCch------------------
Q 016660          204 TVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEK---FEIGKRFGVTEFVNSKNCGDK------------------  259 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~--G~~~vi~~~~~~~~---~~~~~~lg~~~vv~~~~~~~~------------------  259 (385)
                      +|.|+|+ |.+|.-++.+.+..  .+ +|+++.....-   .+.+.+|....++-.++....                  
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g   81 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSG   81 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccC
Confidence            6899998 99999999999976  45 67766544332   234456777776554331111                  


Q ss_pred             -hHHHHhhCC-CccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          260 -SIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       260 -~~i~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                       ..+.++... .+|+|+.++.+-..+...+..++.  |+-+.+++.
T Consensus        82 ~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~--gk~iaLANK  125 (151)
T d1q0qa2          82 QQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRA--GKTILLANK  125 (151)
T ss_dssp             HHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHT--TCEEEECCH
T ss_pred             hHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhc--CCeEEEEcc
Confidence             112333333 689999999888889999999998  466666653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.62  E-value=0.18  Score=40.22  Aligned_cols=98  Identities=13%  Similarity=0.097  Sum_probs=62.1

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCC--C--eEEeCCCCCchhHHHH
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV--T--EFVNSKNCGDKSIIID  264 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~--~--~vv~~~~~~~~~~i~~  264 (385)
                      +.+.....++++||=+|+|. |..++.+++ .+. +|++++.+++..+.+++    .+.  .  .++..+-  .    ..
T Consensus        44 Li~~l~~~~~~~VLDiGcG~-G~~~~~la~-~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~--~----~~  114 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGY-GVIGIALAD-EVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL--Y----EN  114 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST--T----TT
T ss_pred             HHHhCCcCCCCeEEEEeecC-ChhHHHHHh-hcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcch--h----hh
Confidence            44566788999999998755 555666665 344 89999999888777763    232  2  2222221  0    11


Q ss_pred             hhCCCccEEEEccC---Ch----HHHHHHHHHhccCCceEEEe
Q 016660          265 MTDGGADYCFECVG---LA----SLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       265 ~~~g~~d~vid~~g---~~----~~~~~~~~~l~~~~G~~v~~  300 (385)
                      ..++.||+|+-...   +.    ..++.+.+.|+++ |+++..
T Consensus       115 ~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  156 (194)
T d1dusa_         115 VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVV  156 (194)
T ss_dssp             CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             hccCCceEEEEcccEEecchhhhhHHHHHHHhcCcC-cEEEEE
Confidence            12337999985321   22    3367788999997 987654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.60  E-value=0.13  Score=42.94  Aligned_cols=34  Identities=29%  Similarity=0.220  Sum_probs=29.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~  238 (385)
                      +.||+|+ +++|.+.++.+...|+ +|+.++++.++
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH
Confidence            4678887 9999999999999999 89999887654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.071  Score=42.74  Aligned_cols=40  Identities=25%  Similarity=0.369  Sum_probs=34.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  243 (385)
                      .+|.|+|+|.+|...++++...|+ .|+..+.+++.++.+.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHH
Confidence            479999999999999999999999 8999999987666443

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.49  E-value=0.052  Score=45.80  Aligned_cols=58  Identities=16%  Similarity=0.302  Sum_probs=41.1

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      +|||+|+ |-+|...+..++..|+ .|+++++.+              +|..+   ...+.+...+ .+|+||++++.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~--------------~D~~d---~~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQD--------------LDITN---VLAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTT--------------CCTTC---HHHHHHHHHHHCCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEeechh--------------ccCCC---HHHHHHHHHHcCCCEEEeeccc
Confidence            4899997 9999999999999999 899997643              12222   2223444444 67888888764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.47  E-value=0.14  Score=42.61  Aligned_cols=35  Identities=29%  Similarity=0.378  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .+.+|+|+|+|++|-.+++.+-..|.++++.+|.+
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            45789999999999999999999999999998743

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.47  E-value=0.038  Score=46.96  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      +++|+|+|+|..|+.++..+...|+ +|++++.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            4689999999999999999999999 899998653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.44  Score=36.04  Aligned_cols=77  Identities=6%  Similarity=0.042  Sum_probs=50.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHH-HHHH---HcCCCeEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF-EIGK---RFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~-~~~~---~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      .+.++|.|.|.+|...++.+...|. .|++++.++++. +.++   ..|.. ++.-+. .....+.+..-..+|.++-+.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~~~-vi~Gd~-~d~~~L~~a~i~~a~~vi~~~   79 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNAD-VIPGDS-NDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCE-EEESCT-TSHHHHHHHTTTTCSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCCcE-EEEccC-cchHHHHHhccccCCEEEEcc
Confidence            3569999999999999999999999 788887776542 2232   23443 333222 233334443333789999888


Q ss_pred             CChH
Q 016660          278 GLAS  281 (385)
Q Consensus       278 g~~~  281 (385)
                      +...
T Consensus        80 ~~d~   83 (153)
T d1id1a_          80 DNDA   83 (153)
T ss_dssp             SCHH
T ss_pred             ccHH
Confidence            8765

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.43  E-value=0.069  Score=46.83  Aligned_cols=47  Identities=23%  Similarity=0.238  Sum_probs=38.9

Q ss_pred             hccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH
Q 016660          196 TANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  243 (385)
                      ..-+.+|.+|||+|+ |-+|...++.+...|+ +|+++.++.++.+.++
T Consensus         5 ~~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             TCSSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHH
Confidence            344678999999997 9999999988888899 8999888877766554

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=93.31  E-value=0.11  Score=41.29  Aligned_cols=91  Identities=18%  Similarity=0.061  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.+.+|.|+|.|.+|...+++++.+|. +|++.++........+..+....   .+      +.++.. ..|+|+-+.+.
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~~---~~------l~~~l~-~sD~v~~~~pl  110 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH---AT------REDMYP-VCDVVTLNCPL  110 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC---SS------HHHHGG-GCSEEEECSCC
T ss_pred             ccccceeeccccccchhhhhhhhccCc-eEEEEeecccccccccccccccc---CC------HHHHHH-hccchhhcccc
Confidence            357899999999999999999999999 89999876655555555553321   11      112211 36777665543


Q ss_pred             hH-H----HHHHHHHhccCCceEEEecc
Q 016660          280 AS-L----VQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~-~----~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .. +    =.+.+..|+++ ..+|.++-
T Consensus       111 t~~T~~li~~~~l~~mk~g-a~lIN~aR  137 (188)
T d2naca1         111 HPETEHMINDETLKLFKRG-AYIVNTAR  137 (188)
T ss_dssp             CTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             cccchhhhHHHHHHhCCCC-CEEEecCc
Confidence            21 1    14677788886 67776653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.28  E-value=0.11  Score=38.01  Aligned_cols=43  Identities=21%  Similarity=0.139  Sum_probs=36.0

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      +.+.....++.+|+|+|+|.+|+=.++.++.+|. +|..+.+.+
T Consensus        13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~   55 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE   55 (121)
T ss_dssp             HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence            3455566778999999999999999999999998 888887654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.16  E-value=0.075  Score=46.48  Aligned_cols=94  Identities=21%  Similarity=0.295  Sum_probs=53.5

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC---eEEeCCCCCchhHHHHhhCC
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT---EFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~---~vv~~~~~~~~~~i~~~~~g  268 (385)
                      .....++++||-+|+|. |.+++.+|+ .|+++|++++.++ ..+.++    +.+..   .++..+-.+     ..+...
T Consensus        33 ~~~~~~~~~VLDlGcGt-G~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~-----l~~~~~  104 (328)
T d1g6q1_          33 NKDLFKDKIVLDVGCGT-GILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLED-----VHLPFP  104 (328)
T ss_dssp             HHHHHTTCEEEEETCTT-SHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT-----SCCSSS
T ss_pred             ccccCCcCEEEEeCCCC-CHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhh-----ccCccc
Confidence            34556899999999864 666654444 6887999999775 333333    33432   122221101     111223


Q ss_pred             CccEEEEc-cC----C----hHHHHHHHHHhccCCceEE
Q 016660          269 GADYCFEC-VG----L----ASLVQEAYACCRKGWGKTI  298 (385)
Q Consensus       269 ~~d~vid~-~g----~----~~~~~~~~~~l~~~~G~~v  298 (385)
                      .+|+|+.. .+    .    ...+....+.|+++ |+++
T Consensus       105 ~~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg-G~ii  142 (328)
T d1g6q1_         105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG-GLIF  142 (328)
T ss_dssp             CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             ceeEEEEEecceeeccchhHHHHHHHHHhccCCC-eEEE
Confidence            79998752 21    1    12244455789997 8875

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.01  E-value=0.44  Score=37.52  Aligned_cols=89  Identities=22%  Similarity=0.271  Sum_probs=58.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.+.++.|+|.|.+|...+++++.+|. +|++.++..++... ...+...    .+  ..+ +..    ..|+|+-+.+.
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~~~-~~~~~~~----~~--l~e-ll~----~sDiv~~~~Pl  108 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPARA-AQLGIEL----LS--LDD-LLA----RADFISVHLPK  108 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCHHHH-HHHTCEE----CC--HHH-HHH----HCSEEEECCCC
T ss_pred             ccceeeeeccccchhHHHHHHhhhccc-eEEeecCCCChhHH-hhcCcee----cc--HHH-HHh----hCCEEEEcCCC
Confidence            357899999999999999999999999 89999876554433 3334321    11  211 222    26888766553


Q ss_pred             h-HH---H-HHHHHHhccCCceEEEecc
Q 016660          280 A-SL---V-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~-~~---~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      . ++   + ++.++.|+++ ..+|.++-
T Consensus       109 t~~T~~lin~~~l~~mk~~-a~lIN~sR  135 (184)
T d1ygya1         109 TPETAGLIDKEALAKTKPG-VIIVNAAR  135 (184)
T ss_dssp             STTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred             CchhhhhhhHHHHhhhCCC-ceEEEecc
Confidence            2 21   1 3677778886 77777763

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=92.97  E-value=0.22  Score=40.65  Aligned_cols=91  Identities=21%  Similarity=0.262  Sum_probs=60.7

Q ss_pred             CEEEEEcCCHHHH-HHHHHHHHc-CCCEEE-EEcCCchHHH-HHHHcCCC--eEEeCCCCCchhHHHHhhCC-CccEEEE
Q 016660          203 STVVIFGLGSIGL-AVAEGARLC-GATRII-GVDVISEKFE-IGKRFGVT--EFVNSKNCGDKSIIIDMTDG-GADYCFE  275 (385)
Q Consensus       203 ~~VlI~G~g~vG~-~ai~la~~~-G~~~vi-~~~~~~~~~~-~~~~lg~~--~vv~~~~~~~~~~i~~~~~g-~~d~vid  275 (385)
                      =+|.|+|+|.+|. ..+...+.. +. +++ ++++++++.+ .++++|.+  .+..+++      +.++.+. .+|+|+-
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d------~~ell~~~~iD~V~I  106 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN------FDKIAKDPKIDAVYI  106 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTTCCGGGEECSSS------GGGGGGCTTCCEEEE
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhccccccccccCc------hhhhcccccceeeee
Confidence            4688999999996 344444433 67 555 5566776655 45667753  2333444      3344444 7999999


Q ss_pred             ccCChHHHHHHHHHhccCCceEEEecc
Q 016660          276 CVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       276 ~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ++......+.+.+++..  |+-|++..
T Consensus       107 ~tp~~~H~~~~~~al~~--gk~v~~EK  131 (221)
T d1h6da1         107 ILPNSLHAEFAIRAFKA--GKHVMCEK  131 (221)
T ss_dssp             CSCGGGHHHHHHHHHHT--TCEEEECS
T ss_pred             ccchhhhhhHHHHhhhc--chhhhcCC
Confidence            99988878889999988  56666643

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.96  E-value=0.18  Score=42.13  Aligned_cols=42  Identities=21%  Similarity=0.117  Sum_probs=32.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHH-HHH--HcCCCEEEEEcCCchHHHHHH
Q 016660          201 VGSTVVIFGL-GSIGLAVAE-GAR--LCGATRIIGVDVISEKFEIGK  243 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~-la~--~~G~~~vi~~~~~~~~~~~~~  243 (385)
                      .|..+||.|+ +++|.+.++ ||+  ..|+ +|+.+++++++++.+.
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~   50 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLK   50 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHH
Confidence            4667788887 999998665 555  3688 8999999998876543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=92.93  E-value=0.034  Score=42.70  Aligned_cols=83  Identities=7%  Similarity=-0.113  Sum_probs=52.6

Q ss_pred             EEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHHHH
Q 016660          206 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLVQE  285 (385)
Q Consensus       206 lI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~~~  285 (385)
                      =++|+|.+|...++.++. ++..+.+..++.++.+.+.+.+.....+..+  .        -...|+||=|+.... +.+
T Consensus         3 gfIG~G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~--~--------~~~~DiVil~v~d~~-i~~   70 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGGKAATLEK--H--------PELNGVVFVIVPDRY-IKT   70 (153)
T ss_dssp             EEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCC--C--------CC---CEEECSCTTT-HHH
T ss_pred             EEEeCcHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhcccccccchhh--h--------hccCcEEEEeccchh-hhH
Confidence            467999999998877655 3424456788999888777766543333222  1        114799999998776 788


Q ss_pred             HHHHhccCCce-EEEec
Q 016660          286 AYACCRKGWGK-TIVLG  301 (385)
Q Consensus       286 ~~~~l~~~~G~-~v~~g  301 (385)
                      ....++.. ++ ++.++
T Consensus        71 v~~~l~~~-~~ivi~~s   86 (153)
T d2i76a2          71 VANHLNLG-DAVLVHCS   86 (153)
T ss_dssp             HHTTTCCS-SCCEEECC
T ss_pred             HHhhhccc-ceeeeecc
Confidence            88888754 54 44444

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.075  Score=43.82  Aligned_cols=76  Identities=18%  Similarity=0.250  Sum_probs=46.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEcCCchHHHHHHHcCCCe-EEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg~~~-vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      .+.+|||+|+ |.+|...++.+...|. .+|+++.+.+.+......-.... +.|..+   .+.+..... ++|++|.++
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~---~~~~~~~~~-~~d~vi~~~   88 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK---LDDYASAFQ-GHDVGFCCL   88 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG---GGGGGGGGS-SCSEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccc---ccccccccc-ccccccccc
Confidence            4578999998 9999999998887774 47999887654432211111221 122222   112222222 689999999


Q ss_pred             CCh
Q 016660          278 GLA  280 (385)
Q Consensus       278 g~~  280 (385)
                      |..
T Consensus        89 ~~~   91 (232)
T d2bkaa1          89 GTT   91 (232)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            863

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=92.72  E-value=0.18  Score=43.62  Aligned_cols=96  Identities=21%  Similarity=0.231  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC------C---C--eEEeCCCCCchhHHHHhhCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG------V---T--EFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg------~---~--~vv~~~~~~~~~~i~~~~~g  268 (385)
                      ...++|||+|.|. |..+-++++.....+|.+++.+++-.+.++++-      +   .  +++. .+  .. ...+.++.
T Consensus        76 ~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~-~D--a~-~~l~~~~~  150 (312)
T d1uira_          76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI-DD--AR-AYLERTEE  150 (312)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE-SC--HH-HHHHHCCC
T ss_pred             CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEE-ch--HH-HHhhhcCC
Confidence            4567899998765 556667777766669999999999888887631      1   1  1221 11  11 12233444


Q ss_pred             CccEEE-Ec---cC---------ChHHHHHHHHHhccCCceEEEec
Q 016660          269 GADYCF-EC---VG---------LASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       269 ~~d~vi-d~---~g---------~~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      .||+|| |.   .+         +.+.++.+.++|+++ |.++.-.
T Consensus       151 ~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gvlv~~~  195 (312)
T d1uira_         151 RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG-GVMGMQT  195 (312)
T ss_dssp             CEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             cccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC-ceEEEec
Confidence            899986 44   22         124568899999997 9887543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.71  E-value=0.37  Score=37.56  Aligned_cols=44  Identities=11%  Similarity=0.097  Sum_probs=37.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~  247 (385)
                      .+|-|+|.|.||...+.-+...|+ .|++.++++++.+.+.+.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~   46 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA   46 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcc
Confidence            468899999999998888888899 89999999999998876654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=92.67  E-value=0.88  Score=35.22  Aligned_cols=97  Identities=23%  Similarity=0.272  Sum_probs=61.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCEEEEEc-CC-chHHHHHHHcCCCeEEeCCCCCc---------hhHHHHhhCCCcc
Q 016660          204 TVVIFGLGSIGLAVAEGARLCG-ATRIIGVD-VI-SEKFEIGKRFGVTEFVNSKNCGD---------KSIIIDMTDGGAD  271 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~-~~-~~~~~~~~~lg~~~vv~~~~~~~---------~~~i~~~~~g~~d  271 (385)
                      +|.|.|.|-+|..+++++...+ . .++++- .+ ......+..++.+......+...         ...+.++. .++|
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di-~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~-~~vD   80 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDM-KVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML-DEAD   80 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH-HTCS
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCc-eEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhh-cCCC
Confidence            6889999999999999887554 4 555553 22 23445555666553222111000         00011211 2699


Q ss_pred             EEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          272 YCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       272 ~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +|+||+|.-...+.+...+..+ -+.+..+..
T Consensus        81 vViEcTG~f~~~~~~~~hl~~G-~K~vi~~~~  111 (171)
T d1cf2o1          81 IVIDCTPEGIGAKNLKMYKEKG-IKAIFQGGE  111 (171)
T ss_dssp             EEEECCSTTHHHHHHHHHHHTT-CEEEECTTS
T ss_pred             EEEEccCCCCCHHHHHHHHHcC-CCEEEECCC
Confidence            9999999988788888899886 788877643

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.66  E-value=0.16  Score=44.31  Aligned_cols=74  Identities=16%  Similarity=0.141  Sum_probs=45.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc----hHHHHHHH---cCCCeEEeCCCCCchhHHHHhhCC-CccEE
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS----EKFEIGKR---FGVTEFVNSKNCGDKSIIIDMTDG-GADYC  273 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~----~~~~~~~~---lg~~~vv~~~~~~~~~~i~~~~~g-~~d~v  273 (385)
                      +.|||+|+ |-+|...+..+...|+ +|+++++..    +.......   -+...+ . .+......+...... ++|+|
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~-~-~Dl~d~~~l~~~~~~~~~d~V   78 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADNLSNSTYDSVARLEVLTKHHIPFY-E-VDLCDRKGLEKVFKEYKIDSV   78 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTHHHHHHHHHHTSCCCEE-E-CCTTCHHHHHHHHHHSCCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEECCCCcchhHHHhHHhhcccCCeEE-E-eecCCHHHHHHHHhccCCCEE
Confidence            47899997 9999999999888998 888885421    12222222   223222 1 121223334444444 79999


Q ss_pred             EEccCC
Q 016660          274 FECVGL  279 (385)
Q Consensus       274 id~~g~  279 (385)
                      |++++.
T Consensus        79 ihlAa~   84 (347)
T d1z45a2          79 IHFAGL   84 (347)
T ss_dssp             EECCSC
T ss_pred             EEcccc
Confidence            998864

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.60  E-value=0.11  Score=37.94  Aligned_cols=38  Identities=16%  Similarity=0.140  Sum_probs=32.7

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .++...+|+|+|+|.+|+=++..+..+|. +|..+.+.+
T Consensus        18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred             ccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence            34556899999999999999999999999 899997654

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.19  Score=42.79  Aligned_cols=97  Identities=14%  Similarity=0.166  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC--------C--eEEeCCCCCchhHHHHhhCCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--------T--EFVNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--------~--~vv~~~~~~~~~~i~~~~~g~  269 (385)
                      ...++|||+|+|. |..+-.++++.+..+|++++.+++-.+.++++-.        .  +++. .   +.....+.+.+.
T Consensus        77 ~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~-~---Da~~~l~~~~~~  151 (285)
T d2o07a1          77 PNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV-G---DGFEFMKQNQDA  151 (285)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-S---CHHHHHHTCSSC
T ss_pred             cCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE-c---cHHHHHhcCCCC
Confidence            4557899998755 5566677787777799999999998888876421        1  1221 1   111122233448


Q ss_pred             ccEEE-EccC---------ChHHHHHHHHHhccCCceEEEecc
Q 016660          270 ADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       270 ~d~vi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +|+|| |...         +.+..+.+.++|+++ |.++.-+.
T Consensus       152 yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~~  193 (285)
T d2o07a1         152 FDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQGE  193 (285)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCEEEEcCCCCCCcccccccHHHHHHHHHhcCCC-CeEEEecc
Confidence            99986 5332         224477889999997 99887653

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.76  Score=38.79  Aligned_cols=76  Identities=16%  Similarity=0.128  Sum_probs=41.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCC--EEEEEcCCchHHH----HHHHc---CCCe-E--EeCCCCCchhH-HHHhhCCC
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGAT--RIIGVDVISEKFE----IGKRF---GVTE-F--VNSKNCGDKSI-IIDMTDGG  269 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~--~vi~~~~~~~~~~----~~~~l---g~~~-v--v~~~~~~~~~~-i~~~~~g~  269 (385)
                      .|||.|+ +++|.+.+..+...|++  .|+.+.++.++.+    .++++   +... .  +|..+...... +.+...+.
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g~   83 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEGR   83 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTSC
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccccc
Confidence            3567787 99999999888888884  2333333333322    23333   2221 2  23333211111 22223457


Q ss_pred             ccEEEEccCC
Q 016660          270 ADYCFECVGL  279 (385)
Q Consensus       270 ~d~vid~~g~  279 (385)
                      .|+++++.|.
T Consensus        84 idilvnnag~   93 (285)
T d1jtva_          84 VDVLVCNAGL   93 (285)
T ss_dssp             CSEEEECCCC
T ss_pred             hhhhhhcccc
Confidence            9999998875

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.39  E-value=0.12  Score=40.75  Aligned_cols=48  Identities=25%  Similarity=0.122  Sum_probs=36.1

Q ss_pred             hhhhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH
Q 016660          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  242 (385)
                      +.+...--++.+|||+|+|+++.+++..+...|  +|.++.++.+|.+.+
T Consensus         9 l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~--~i~I~nR~~~ka~~l   56 (177)
T d1nvta1           9 LEEEIGRVKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAEAL   56 (177)
T ss_dssp             HHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSHHHHHHH
T ss_pred             HHHhCCCcCCCEEEEECCcHHHHHHHHHHcccc--ceeeehhhhhHHHHH
Confidence            434333457889999999999998877765444  899999998887654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.35  E-value=0.092  Score=43.26  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      ...+.+|+|+|+|+.|+.++..++..|+ .|++++.+++
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccc
Confidence            4577899999999999999999999999 8999976653

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=92.34  E-value=1.2  Score=35.51  Aligned_cols=96  Identities=10%  Similarity=0.103  Sum_probs=63.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEc
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFEC  276 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~  276 (385)
                      +..||=+|+|. |..++.+|+..--..+++++.++..++.+.    +.|.+.+--... +.. .+...... .+|.|+-.
T Consensus        30 ~PlvLeIGcG~-G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~-Da~-~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          30 NPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNI-DAD-TLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECC-CGG-GHHHHCCTTSCCEEEEE
T ss_pred             CceEEEEEecC-cHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhccc-chh-hhhcccCchhhhccccc
Confidence            34566668876 888889999763339999999988776543    467665422222 122 23343434 78887655


Q ss_pred             cCC--------------hHHHHHHHHHhccCCceEEEec
Q 016660          277 VGL--------------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       277 ~g~--------------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ...              +..++.+.+.|++| |.+.+..
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg-G~l~i~T  144 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG-GSIHFKT  144 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS-CEEEEEE
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCC-cEEEEEE
Confidence            443              25688999999997 9987764

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.33  E-value=0.68  Score=34.37  Aligned_cols=75  Identities=13%  Similarity=0.180  Sum_probs=46.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHH-HcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          204 TVVIFGL-GSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~-~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +|.|.|+ |-+|...++... ..++ .+++.-.                  ..+  .   +......++|++||++....
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~~d------------------~~~--~---~~~~~~~~~DvvIDFS~p~~   56 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAELD------------------AGD--P---LSLLTDGNTEVVIDFTHPDV   56 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTS-EEEEEEC------------------TTC--C---THHHHTTTCSEEEECCCTTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEe------------------cCC--c---hhhhccccCCEEEEcccHHH
Confidence            5889997 999999888876 4567 4444321                  111  1   11122236899999997766


Q ss_pred             HHHHHHHHhccCCceEEEeccCC
Q 016660          282 LVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       282 ~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      ..+.+-.+++.  |.=+.+|.++
T Consensus        57 ~~~~~~~~~~~--~~~~ViGTTG   77 (135)
T d1yl7a1          57 VMGNLEFLIDN--GIHAVVGTTG   77 (135)
T ss_dssp             HHHHHHHHHHT--TCEEEECCCC
T ss_pred             HHHHHHHHHhc--CCCEEEeccc
Confidence            44444444444  6666778765

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.31  E-value=0.29  Score=42.08  Aligned_cols=98  Identities=13%  Similarity=0.130  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCC--------eE-EeCCCCCchhHHHHhhCCCc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--------EF-VNSKNCGDKSIIIDMTDGGA  270 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--------~v-v~~~~~~~~~~i~~~~~g~~  270 (385)
                      ....+|||+|+|. |..+-.++++...++|.+++.+++-.+.++++-..        ++ +...+  ....+ +.++..|
T Consensus       105 ~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~D--a~~~l-~~~~~~y  180 (312)
T d2b2ca1         105 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD--GFEFL-KNHKNEF  180 (312)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSC--HHHHH-HHCTTCE
T ss_pred             CCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEch--HHHHH-HhCCCCC
Confidence            4457899998765 55566778877777999999999999988875311        11 11111  12223 2344489


Q ss_pred             cEEE-Ecc---C------ChHHHHHHHHHhccCCceEEEecc
Q 016660          271 DYCF-ECV---G------LASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       271 d~vi-d~~---g------~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      |+|| |..   +      +.+.++.+.++|+++ |.++.-+.
T Consensus       181 DvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~-Gi~v~q~~  221 (312)
T d2b2ca1         181 DVIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQGE  221 (312)
T ss_dssp             EEEEECCC-------------HHHHHHHHEEEE-EEEEEECC
T ss_pred             CEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCC-cEEEEecC
Confidence            9997 322   1      224467888999997 99887654

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=92.27  E-value=0.81  Score=35.34  Aligned_cols=94  Identities=24%  Similarity=0.381  Sum_probs=59.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC-C--chHHHHHHHc----C---CC---------------eEEeCCCCCc
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDV-I--SEKFEIGKRF----G---VT---------------EFVNSKNCGD  258 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~-~--~~~~~~~~~l----g---~~---------------~vv~~~~~~~  258 (385)
                      +|.|.|-|-+|.++.+.+...+. .|+++-. .  .+.+..+-++    |   .+               .++..++  .
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~-~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~--p   78 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGA-QVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMK--P   78 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSS--G
T ss_pred             eEEEECCcHHHHHHHHHHHhCCC-cEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCC--h
Confidence            58899999999999999887888 5666632 2  2444444431    1   10               0111111  0


Q ss_pred             hhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          259 KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       259 ~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                       .. ..+..-++|+|+||+|--...+.+...+..+ .+-|.++..
T Consensus        79 -~~-i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~g-akkViisaP  120 (169)
T d1dssg1          79 -EN-IPWSKAGAEYIVESTGVFTTIEKASAHFKGG-AKKVIISAP  120 (169)
T ss_dssp             -GG-CCHHHHTCCEEEECSSSCCSHHHHGGGGTTT-CSEEEESSC
T ss_pred             -HH-CCccccCCCEEEecCceEcCHHHHHHHHhcC-CceEeecCC
Confidence             11 0111127999999999877788889999986 777777654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.27  E-value=0.076  Score=44.52  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=29.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .|+|+|+|+.|++++.+++..|...|.++++++
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            589999999999999999999976888887754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.26  E-value=0.12  Score=37.56  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      ..++++|+|+|.+|+-+++.+..+|. +|..+.+.+.
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             cCCeEEEECCCccceeeeeeeccccc-EEEEEEecce
Confidence            34789999999999999999999999 8888876653

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.16  Score=41.42  Aligned_cols=104  Identities=14%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHh---
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDM---  265 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~---  265 (385)
                      ...+.....+||=+|.+. |..++.+|+.+  +. +|+.++.+++..+.+++    .|....+.....+..+.+..+   
T Consensus        53 ~L~~~~~~k~vLEiGt~~-GyStl~~a~al~~~g-~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~  130 (219)
T d2avda1          53 NLARLIQAKKALDLGTFT-GYSALALALALPADG-RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA  130 (219)
T ss_dssp             HHHHHTTCCEEEEECCTT-SHHHHHHHTTSCTTC-EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT
T ss_pred             HHHHccCCCeEEEEechh-hHHHHHHHHhCCCCc-eEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhh
Confidence            345566778999999744 67778888865  34 89999999998776664    454332222221222223222   


Q ss_pred             -hCCCccEEEEccC-C--hHHHHHHHHHhccCCceEEEec
Q 016660          266 -TDGGADYCFECVG-L--ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       266 -~~g~~d~vid~~g-~--~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                       ..+.||+||--.. .  ...++.+++.|++| |.++.=.
T Consensus       131 ~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G-Gvii~Dn  169 (219)
T d2avda1         131 GEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLR  169 (219)
T ss_dssp             TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cccCCccEEEEeCCHHHHHHHHHHHHHHhcCC-cEEEEeC
Confidence             1336999964332 2  23477899999996 7776543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=92.10  E-value=1.3  Score=33.74  Aligned_cols=87  Identities=14%  Similarity=0.077  Sum_probs=56.3

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHc-CCCEEEEEcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          204 TVVIFGLGSIGLA-VAEGARLC-GATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       204 ~VlI~G~g~vG~~-ai~la~~~-G~~~vi~~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      +|.|+|.|.+|.- .+..++.. +++-+.+.++++++.+ ..+++++.. +  +   .   ...+.+ .+|+|+-++...
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~-~--~---~---~~~l~~-~~D~V~I~tp~~   72 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPY-A--D---S---LSSLAA-SCDAVFVHSSTA   72 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCB-C--S---S---HHHHHT-TCSEEEECSCTT
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccc-c--c---c---chhhhh-hcccccccccch
Confidence            5789999999964 56666644 6733445566666544 456777642 1  1   1   122222 589999999988


Q ss_pred             HHHHHHHHHhccCCceEEEecc
Q 016660          281 SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       281 ~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ...+.+..++..  |+=|++-.
T Consensus        73 ~h~~~~~~al~~--gk~V~~EK   92 (164)
T d1tlta1          73 SHFDVVSTLLNA--GVHVCVDK   92 (164)
T ss_dssp             HHHHHHHHHHHT--TCEEEEES
T ss_pred             hccccccccccc--cceeeccc
Confidence            878888888888  45566643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.08  E-value=0.086  Score=45.35  Aligned_cols=37  Identities=24%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .....+|+|+|+|..|+.++..+...|+ +|++++..+
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            4455789999999999999999998999 899998654

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=92.08  E-value=0.16  Score=40.47  Aligned_cols=90  Identities=17%  Similarity=0.127  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC-
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL-  279 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~-  279 (385)
                      .+.++.|+|.|.+|...+++++.+|. +|++.+............+..   ...+  ..+ +..    ..|+|.-+.+. 
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~---~~~~--l~~-ll~----~sD~v~l~~plt  114 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSSDEASYQAT---FHDS--LDS-LLS----VSQFFSLNAPST  114 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHHHHTCE---ECSS--HHH-HHH----HCSEEEECCCCC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc-ccccccccccccchhhccccc---ccCC--HHH-HHh----hCCeEEecCCCC
Confidence            47999999999999999999999999 899988755433333332221   1111  111 112    25777665543 


Q ss_pred             hHH---H-HHHHHHhccCCceEEEecc
Q 016660          280 ASL---V-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~~---~-~~~~~~l~~~~G~~v~~g~  302 (385)
                      +++   + ...++.|+++ ..+|.++-
T Consensus       115 ~~T~~li~~~~l~~mk~~-a~lIN~sR  140 (191)
T d1gdha1         115 PETRYFFNKATIKSLPQG-AIVVNTAR  140 (191)
T ss_dssp             TTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             chHhheecHHHhhCcCCc-cEEEecCC
Confidence            221   1 3667778886 77776653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.99  E-value=0.17  Score=37.09  Aligned_cols=41  Identities=24%  Similarity=0.413  Sum_probs=33.6

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      +...-.++.+|+|+|+|.+|+-+++.+..+|. +|..++..+
T Consensus        23 ~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~   63 (123)
T d1nhpa2          23 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD   63 (123)
T ss_dssp             HHHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             HHhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence            33334567899999999999999999999999 888887654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.97  E-value=0.061  Score=44.45  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=28.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .|+|+|+|..|+.++..++..|++.|++++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            489999999999999999999985699998654

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.85  Score=39.84  Aligned_cols=57  Identities=25%  Similarity=0.315  Sum_probs=42.7

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--CchHHHHHHHcCCCeEE
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFV  251 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~lg~~~vv  251 (385)
                      +...++++..|+...+|..|.+++..|+.+|++-++++..  +++|.+.++.+|++-+.
T Consensus        90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~  148 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVR  148 (355)
T ss_dssp             HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEE
T ss_pred             HcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEE
Confidence            4445567777666677999999999999999965555533  45688889999987443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.90  E-value=0.093  Score=45.15  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      ++..+|+|+|+|..|+.++..+...|+ +|++++.++
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~~   38 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARD   38 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            466789999999999999999999999 899997643

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.88  E-value=0.24  Score=42.34  Aligned_cols=97  Identities=16%  Similarity=0.156  Sum_probs=62.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC--------C--eEEeCCCCCchhHHHHhhCCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--------T--EFVNSKNCGDKSIIIDMTDGG  269 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--------~--~vv~~~~~~~~~~i~~~~~g~  269 (385)
                      ....+|||+|+|. |..+-.++++.+.++|.+++.+++-.+.++++-.        .  +++. .+  ... ..+.+++.
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~-~D--a~~-~l~~~~~~  162 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI-AN--GAE-YVRKFKNE  162 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-SC--HHH-HGGGCSSC
T ss_pred             CCCceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh-hh--HHH-HHhcCCCC
Confidence            3457899998755 4556677787777799999999998888876421        1  1221 11  111 22223347


Q ss_pred             ccEEE-EccC----------ChHHHHHHHHHhccCCceEEEecc
Q 016660          270 ADYCF-ECVG----------LASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       270 ~d~vi-d~~g----------~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      ||+|| |+..          +.+.++.+.++|+++ |.++.-..
T Consensus       163 yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~-Gi~v~q~~  205 (295)
T d1inla_         163 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAETE  205 (295)
T ss_dssp             EEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             CCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCC-cEEEEecC
Confidence            99986 4321          235578899999997 98887653

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.76  E-value=1.1  Score=34.55  Aligned_cols=95  Identities=17%  Similarity=0.257  Sum_probs=57.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc---CCCEEEEEcCC--chHHHHHHHc----C---C-------------Ce--EEeCCC
Q 016660          203 STVVIFGLGSIGLAVAEGARLC---GATRIIGVDVI--SEKFEIGKRF----G---V-------------TE--FVNSKN  255 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~---G~~~vi~~~~~--~~~~~~~~~l----g---~-------------~~--vv~~~~  255 (385)
                      .+|.|.|-|-+|.++.+.+...   .. .|+++-..  .+.+..+-++    |   .             ..  +++.++
T Consensus         1 ~kIgINGfGRIGR~v~R~~~~~~~~~i-~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~   79 (169)
T d1hdgo1           1 ARVAINGFGRIGRLVYRIIYERKNPDI-EVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD   79 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTC-EEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CEEEEECCChHHHHHHHHHHhccCCCE-EEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCC
Confidence            3688999999999999877643   35 67776322  2333333321    1   0             11  111111


Q ss_pred             CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          256 CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       256 ~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +...+ +.++   ++|+|+||+|--...+.+...+..+ .+-|.++..
T Consensus        80 p~~i~-W~~~---gvD~ViEcTG~f~t~~~~~~hl~~G-akkViiSAP  122 (169)
T d1hdgo1          80 PSKLP-WKDL---GVDFVIESTGVFRNREKAELHLQAG-AKKVIITAP  122 (169)
T ss_dssp             GGGSC-HHHH---TCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSC
T ss_pred             hhhCC-cccc---CCCEEEEecceeccccchhhhccCC-CceEEEecc
Confidence            11000 2222   7999999999876678888899886 766666654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.68  E-value=0.33  Score=36.78  Aligned_cols=77  Identities=14%  Similarity=0.101  Sum_probs=48.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASLV  283 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~~  283 (385)
                      +|-|+|.|.+|...+.-+...|+ .|++.++.+++....+..++... +.    ..+ +.+    ..|+||-|+......
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~-~~----~~e-~~~----~~diIi~~v~~~~~~   70 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIERARTVGVT-ET----SEE-DVY----SCPVVISAVTPGVAL   70 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHHHHHHHTCE-EC----CHH-HHH----TSSEEEECSCGGGHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchhHHHHHhhhccccc-cc----HHH-HHh----hcCeEEEEecCchHH
Confidence            47788999999999999888999 78888777666554443333222 11    111 111    367777777776644


Q ss_pred             HHHHHHhc
Q 016660          284 QEAYACCR  291 (385)
Q Consensus       284 ~~~~~~l~  291 (385)
                      +.+.....
T Consensus        71 ~~~~~~~~   78 (152)
T d1i36a2          71 GAARRAGR   78 (152)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHhhcc
Confidence            44444433

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=91.55  E-value=0.31  Score=41.28  Aligned_cols=96  Identities=16%  Similarity=0.187  Sum_probs=64.9

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHHH----cCCCeEEeCCCCCchhHHHHh-hCCC
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSIIIDM-TDGG  269 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~----lg~~~vv~~~~~~~~~~i~~~-~~g~  269 (385)
                      .++.++.+||=+|+|. |..+..+++..  +. +|+++|.+++.++.+++    .+.+.-+...+  .    ..+ .++.
T Consensus        23 ~~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d--~----~~~~~~~~   94 (281)
T d2gh1a1          23 WKITKPVHIVDYGCGY-GYLGLVLMPLLPEGS-KYTGIDSGETLLAEARELFRLLPYDSEFLEGD--A----TEIELNDK   94 (281)
T ss_dssp             SCCCSCCEEEEETCTT-THHHHHHTTTSCTTC-EEEEEECCHHHHHHHHHHHHSSSSEEEEEESC--T----TTCCCSSC
T ss_pred             hccCCcCEEEEecCcC-CHHHHHHHHhCCCCC-EEEEEecchhHhhhhhcccccccccccccccc--c----ccccccCC
Confidence            3567888999999875 88888888875  45 89999999988887764    33321121112  1    111 1337


Q ss_pred             ccEEEEccC-----C-hHHHHHHHHHhccCCceEEEec
Q 016660          270 ADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       270 ~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ||+|+....     . ...++++.+.|+++ |.++.+-
T Consensus        95 fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~lii~~  131 (281)
T d2gh1a1          95 YDIAICHAFLLHMTTPETMLQKMIHSVKKG-GKIICFE  131 (281)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             ceEEEEehhhhcCCCHHHHHHHHHHHcCcC-cEEEEEE
Confidence            999986432     2 24578999999997 9887653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=91.50  E-value=0.13  Score=42.40  Aligned_cols=35  Identities=26%  Similarity=0.189  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      +...+|+|+|+|..|++++..+...|. +|.++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            344579999999999999999999999 89999763

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.48  E-value=0.076  Score=45.12  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=29.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      .|+|+|+|+.|++++..++..|+ +|++++..++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            49999999999999999999999 8999987653

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.47  E-value=0.32  Score=38.83  Aligned_cols=71  Identities=23%  Similarity=0.344  Sum_probs=46.1

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC-CeEEeCCCCCchhHHHHhhCCCccEE
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSIIIDMTDGGADYC  273 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~~vv~~~~~~~~~~i~~~~~g~~d~v  273 (385)
                      ...++ .|++||=.|+|. |.+++. |...|+++|++++.+++..+.+++.-. ..++..+       +.. .++.||+|
T Consensus        43 ~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D-------~~~-l~~~fD~V  111 (197)
T d1ne2a_          43 NDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD-------VSE-ISGKYDTW  111 (197)
T ss_dssp             HHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECC-------GGG-CCCCEEEE
T ss_pred             HcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEEEe-------hhh-cCCcceEE
Confidence            34444 689999998754 555544 445677799999999998888876432 2333322       112 24579999


Q ss_pred             EEc
Q 016660          274 FEC  276 (385)
Q Consensus       274 id~  276 (385)
                      |-.
T Consensus       112 i~N  114 (197)
T d1ne2a_         112 IMN  114 (197)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            854

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=91.42  E-value=0.2  Score=39.86  Aligned_cols=84  Identities=14%  Similarity=0.080  Sum_probs=53.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe-----EEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-----FVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-----vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      +|.|+|+|..|.+.+.++-..|. .|....++++..+.+.+-+...     +-.++.-..-..+.+... +.|++|-+++
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~-~ad~iiiavP   86 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN-GAEIILFVIP   86 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT-TCSCEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccC-CCCEEEEcCc
Confidence            69999999999998888887787 8999999888887776533211     000111000000222222 4799999998


Q ss_pred             ChHHHHHHHHHh
Q 016660          279 LASLVQEAYACC  290 (385)
Q Consensus       279 ~~~~~~~~~~~l  290 (385)
                      +.. +...++.+
T Consensus        87 s~~-~~~~~~~~   97 (189)
T d1n1ea2          87 TQF-LRGFFEKS   97 (189)
T ss_dssp             HHH-HHHHHHHH
T ss_pred             HHH-HHHHHHHH
Confidence            776 55555543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.31  E-value=0.16  Score=39.94  Aligned_cols=39  Identities=26%  Similarity=0.286  Sum_probs=33.1

Q ss_pred             EEEEE-cCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH
Q 016660          204 TVVIF-GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (385)
Q Consensus       204 ~VlI~-G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  243 (385)
                      +|.|+ |+|.+|...++.+...|+ +|++.++++++.+.+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l~   41 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKA   41 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            47888 569999999999999999 8999999988866543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.29  E-value=0.17  Score=36.79  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      ..++++|+|+|.+|+=+++.+..+|. +|..+...+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence            45889999999999999999999999 788886554

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=91.29  E-value=1.1  Score=37.81  Aligned_cols=57  Identities=18%  Similarity=0.221  Sum_probs=41.6

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--CchHHHHHHHcCCCeEE
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFV  251 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~lg~~~vv  251 (385)
                      +...+.++.+|+...+|..|++++..++.+|.+-+|++..  ++.+.+.++.+|+.-++
T Consensus        53 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~  111 (292)
T d2bhsa1          53 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELIL  111 (292)
T ss_dssp             HTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEE
T ss_pred             HhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcce
Confidence            4445566676666678999999999999999964555433  45677888999986443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.18  Score=36.46  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .++|+|+|+|.+|+-+++.++.+|. +|..+.+.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence            4689999999999999999999999 899987765

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.15  E-value=0.52  Score=34.66  Aligned_cols=92  Identities=18%  Similarity=0.199  Sum_probs=56.2

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEE-EcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~-~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +|.|+|+ |-+|++..++++..+. .++. ++.+..           ..                -..+|++||++....
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~~~~-----------~~----------------~~~~DVvIDFS~p~~   53 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDVNGV-----------EE----------------LDSPDVVIDFSSPEA   53 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEETTEE-----------EE----------------CSCCSEEEECSCGGG
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCC-eEEEEECCCcH-----------HH----------------hccCCEEEEecCHHH
Confidence            5889997 9999999999999898 4443 322110           00                014799999998777


Q ss_pred             HHHHHHHHhccCCceEEEeccCCCCCcccccHHHHhhcCcEEEEe
Q 016660          282 LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  326 (385)
Q Consensus       282 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  326 (385)
                      +.+.+-.+++.  +.=+.+|.++- .........-..+.+.+...
T Consensus        54 ~~~~l~~~~~~--~~p~ViGTTG~-~~~~~~~i~~~ak~~pv~~a   95 (128)
T d1vm6a3          54 LPKTVDLCKKY--RAGLVLGTTAL-KEEHLQMLRELSKEVPVVQA   95 (128)
T ss_dssp             HHHHHHHHHHH--TCEEEECCCSC-CHHHHHHHHHHTTTSEEEEC
T ss_pred             HHHHHHHHHhc--CCCEEEEcCCC-CHHHHHHHHHHHhhCCEEee
Confidence            44444444444  66677877642 22223323334556666554

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.08  E-value=0.19  Score=36.77  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .++++|+|+|.+|+=+++++..+|. +|..+.+.+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence            4689999999999999999999999 899887654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=91.04  E-value=0.33  Score=40.39  Aligned_cols=100  Identities=12%  Similarity=-0.064  Sum_probs=65.1

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC-CeEEeCCCCCchhHHHHhh--CCCcc
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSIIIDMT--DGGAD  271 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~~vv~~~~~~~~~~i~~~~--~g~~d  271 (385)
                      ......++.+||=+|+|. |..+.++|..... .|.+++.+++-++.+++.-. ...++....+    +..+.  ++.||
T Consensus        87 ~~l~~~~~~~vLD~GcG~-G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d----~~~~~~~~~~fD  160 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGI-GRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILAS----METATLPPNTYD  160 (254)
T ss_dssp             HTSTTCCCSEEEEETCTT-THHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESC----GGGCCCCSSCEE
T ss_pred             hhCCCCCCCeEEEecccC-ChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEcc----ccccccCCCccc
Confidence            334456778899889876 7788888876555 89999999998888876422 2222221111    12222  33799


Q ss_pred             EEEEccCC-----h---HHHHHHHHHhccCCceEEEec
Q 016660          272 YCFECVGL-----A---SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       272 ~vid~~g~-----~---~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      +|+..-.-     +   ..++.+.+.|+++ |.++..-
T Consensus       161 ~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg-G~iii~e  197 (254)
T d1xtpa_         161 LIVIQWTAIYLTDADFVKFFKHCQQALTPN-GYIFFKE  197 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             eEEeeccccccchhhhHHHHHHHHHhcCCC-cEEEEEe
Confidence            99764322     1   3477899999997 9888654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.02  E-value=0.58  Score=41.33  Aligned_cols=94  Identities=16%  Similarity=0.148  Sum_probs=61.5

Q ss_pred             EEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCeE--------------EeCCCCCchhHHHHhhC
Q 016660          206 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF--------------VNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       206 lI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~v--------------v~~~~~~~~~~i~~~~~  267 (385)
                      ++-+-++.|.-.+.+|+..|+++|++.|.+++-.+++++    -+....              +.... .+........+
T Consensus        49 vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~-~Da~~~~~~~~  127 (375)
T d2dula1          49 VLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINH-DDANRLMAERH  127 (375)
T ss_dssp             EEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEE-SCHHHHHHHST
T ss_pred             EEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeeh-hhhhhhhHhhc
Confidence            344556778899999998899899999999998887764    122111              00000 01111222223


Q ss_pred             CCccEE-EEccCCh-HHHHHHHHHhccCCceEEEec
Q 016660          268 GGADYC-FECVGLA-SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       268 g~~d~v-id~~g~~-~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      ..||+| +|..|++ ..+..++++++.+ |-+....
T Consensus       128 ~~fDvIDiDPfGs~~pfldsAi~a~~~~-Gll~vTa  162 (375)
T d2dula1         128 RYFHFIDLDPFGSPMEFLDTALRSAKRR-GILGVTA  162 (375)
T ss_dssp             TCEEEEEECCSSCCHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CcCCcccCCCCCCcHHHHHHHHHHhccC-CEEEEEe
Confidence            379987 8999985 5578999999986 7766554

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.96  E-value=0.13  Score=44.61  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      +..+|+|+|||..|+.++..+...|. +|++++..+
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence            35789999999999999999998898 899998654

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=90.94  E-value=0.5  Score=36.57  Aligned_cols=96  Identities=18%  Similarity=0.215  Sum_probs=58.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc--hHHHHHHHc----C---C-------------CeEEeCCCCCchhH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKRF----G---V-------------TEFVNSKNCGDKSI  261 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~l----g---~-------------~~vv~~~~~~~~~~  261 (385)
                      +|.|.|-|-+|.++.+.+...+. .|+++-...  +....+-++    |   .             ..+--+.+. ....
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i-~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~-~p~~   79 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGV-EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVK-DPKE   79 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCS-SGGG
T ss_pred             EEEEECCcHHHHHHHHHHhcCCC-EEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecC-ChHH
Confidence            57899999999999998888888 566663322  223333221    1   0             001011110 0111


Q ss_pred             HHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          262 IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       262 i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                       ..+...++|+|+||+|.-...+.+...+..+ .+-|.++..
T Consensus        80 -i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP  119 (168)
T d2g82a1          80 -IPWAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVIITAP  119 (168)
T ss_dssp             -CCTGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEESSC
T ss_pred             -CcccccCCceeEeccccccchHHhhhhhccc-cceeeeccc
Confidence             1122227999999999877678888888886 766766654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.90  E-value=0.22  Score=42.76  Aligned_cols=31  Identities=23%  Similarity=0.339  Sum_probs=27.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~  234 (385)
                      .+|||+|+ |-+|...+..+...|+ .|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            57999997 9999999999988999 8988864

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=90.90  E-value=0.12  Score=41.01  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=33.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  242 (385)
                      .+|.|+|+|.+|...+.++...|+ .|+..+.+++.++.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhh
Confidence            468999999999998888888899 899999998876644

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=90.84  E-value=0.24  Score=42.96  Aligned_cols=75  Identities=20%  Similarity=0.201  Sum_probs=44.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      +|||+|+ |-+|...++.+...|.-+|++++....+...+.+..--..+..+=.+... +.+....++|+||.+++.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~-~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSE-WIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSH-HHHHHHHHCSEEEECBCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHH-HHHHHHhCCCcccccccc
Confidence            5899997 99999999888888843899997765544433221111122211101112 222111269999998875

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.78  E-value=0.45  Score=40.07  Aligned_cols=75  Identities=19%  Similarity=0.199  Sum_probs=45.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch-----HHHH---HHHcCCCeEEeCCCCCchhHHHHhhCCCcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-----KFEI---GKRFGVTEFVNSKNCGDKSIIIDMTDGGAD  271 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~-----~~~~---~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d  271 (385)
                      +..+|||+|+ |.+|...+..+...|. .|+++.+++.     +.+.   ....++..+ .. +......+..... +.+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v-~~-d~~d~~~~~~~~~-~~~   77 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI-EA-SLDDHQRLVDALK-QVD   77 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHHHHHHHHTTTCEEE-CC-CSSCHHHHHHHHT-TCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCcccchhHHHHHhhhccCCcEEE-Ee-ecccchhhhhhcc-Ccc
Confidence            3456999997 9999999998888998 7888877542     2222   233444332 21 2122233344433 567


Q ss_pred             EEEEccCC
Q 016660          272 YCFECVGL  279 (385)
Q Consensus       272 ~vid~~g~  279 (385)
                      .++.+.+.
T Consensus        78 ~~~~~~~~   85 (312)
T d1qyda_          78 VVISALAG   85 (312)
T ss_dssp             EEEECCCC
T ss_pred             hhhhhhhh
Confidence            78877654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.78  E-value=0.3  Score=41.30  Aligned_cols=94  Identities=15%  Similarity=0.195  Sum_probs=59.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCC--------------C--eEEeCCCCCchhHHH
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--------------T--EFVNSKNCGDKSIII  263 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--------------~--~vv~~~~~~~~~~i~  263 (385)
                      ....+|||+|+|. |..+-.++++ ...+|.+++.+++-.+.++++-.              +  +++.. +  ....++
T Consensus        71 ~~p~~vLiiG~G~-G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~-D--a~~~l~  145 (276)
T d1mjfa_          71 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIG-D--GFEFIK  145 (276)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEES-C--HHHHHH
T ss_pred             CCCceEEEecCCc-hHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEC-h--HHHHHh
Confidence            4567899998754 3344455554 44589999999998888876321              1  12221 1  112232


Q ss_pred             HhhCCCccEEE-EccCC---------hHHHHHHHHHhccCCceEEEec
Q 016660          264 DMTDGGADYCF-ECVGL---------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       264 ~~~~g~~d~vi-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                        .++++|+|| |+...         .+.++.+.++|+++ |.++.-+
T Consensus       146 --~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~-Gv~v~q~  190 (276)
T d1mjfa_         146 --NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQA  190 (276)
T ss_dssp             --HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             --ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC-ceEEEec
Confidence              234899985 44432         35578899999997 9887654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.52  E-value=0.28  Score=36.04  Aligned_cols=88  Identities=16%  Similarity=0.186  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCCHH-----------HHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-
Q 016660          201 VGSTVVIFGLGSI-----------GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-  268 (385)
Q Consensus       201 ~~~~VlI~G~g~v-----------G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-  268 (385)
                      .-.+|||+|+|+.           +.-++..+|..|+ +++.+.++++....-..+ +++++  -++-..+.+.+...- 
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd~d~-aD~lY--fePlt~e~v~~Ii~~E   81 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTDPEM-ADATY--IEPIHWEVVRKIIEKE   81 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGCGGG-SSEEE--CSCCCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcChhh-cceee--eecCCHHHHHHHHHHh
Confidence            4478999998753           3445666667799 899998888765443332 23442  122233334443333 


Q ss_pred             CccEEEEccCChHHHHHHHHHhcc
Q 016660          269 GADYCFECVGLASLVQEAYACCRK  292 (385)
Q Consensus       269 ~~d~vid~~g~~~~~~~~~~~l~~  292 (385)
                      ..|.|+-..|+..+++.+.++.+.
T Consensus        82 ~pd~il~~~GGQtalnla~~L~~~  105 (127)
T d1a9xa3          82 RPDAVLPTMGGQTALNCALELERQ  105 (127)
T ss_dssp             CCSEEECSSSHHHHHHHHHHHHHT
T ss_pred             CcCCeEEEeeeehHhHHHHHHHHc
Confidence            788888888888877777777655

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.48  E-value=0.24  Score=36.77  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .+.++.+|+|+|+|.+|+=++..++..|. +|..++..+
T Consensus        31 ~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~   68 (133)
T d1q1ra2          31 QLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA   68 (133)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence            35678899999999999999999999999 899997654

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.47  E-value=0.13  Score=42.28  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=31.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~  238 (385)
                      +.++||.|+ +++|.+.++.+...|+ +|+.+++++++
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCccc
Confidence            467899987 9999999999999999 89999887654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.29  E-value=0.31  Score=42.63  Aligned_cols=76  Identities=18%  Similarity=0.190  Sum_probs=46.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       200 ~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      .++-+|||+|+ |-+|...+..+...|+ .|+++++..... ............. +......+..... ++|.|+.+++
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~~-~~~~~~~~~~~~~-D~~~~~~~~~~~~-~~d~Vih~a~   88 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEH-MTEDMFCDEFHLV-DLRVMENCLKVTE-GVDHVFNLAA   88 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSS-SCGGGTCSEEEEC-CTTSHHHHHHHHT-TCSEEEECCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCccc-hhhhcccCcEEEe-echhHHHHHHHhh-cCCeEeeccc
Confidence            35678999987 9999999999999999 899887543321 1112222222222 2122222333332 6899999874


Q ss_pred             C
Q 016660          279 L  279 (385)
Q Consensus       279 ~  279 (385)
                      .
T Consensus        89 ~   89 (363)
T d2c5aa1          89 D   89 (363)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.23  E-value=0.22  Score=35.88  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .++++|+|+|.+|+-+++.++.+|. +|..+.+.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence            4789999999999999999999999 898887654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=90.18  E-value=0.16  Score=40.85  Aligned_cols=86  Identities=19%  Similarity=0.081  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC-
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL-  279 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~-  279 (385)
                      .+.+|.|+|.|.+|...+++++.+|. +|++.++...+.       ....+...+  .. .+..    ..|+|.-++.. 
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-------~~~~~~~~~--l~-~l~~----~~D~v~~~~plt  108 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMKG-------DHPDFDYVS--LE-DLFK----QSDVIDLHVPGI  108 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSS-------CCTTCEECC--HH-HHHH----HCSEEEECCCCC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCccchh-------hhcchhHHH--HH-HHHH----hcccceeeeccc
Confidence            56899999999999999999999999 899998654321       100111111  11 1212    25777665543 


Q ss_pred             hHH----HHHHHHHhccCCceEEEecc
Q 016660          280 ASL----VQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~~----~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +.+    =.+.+..|+++ ..+|.++-
T Consensus       109 ~~T~~li~~~~l~~mk~~-a~lIN~aR  134 (199)
T d1dxya1         109 EQNTHIINEAAFNLMKPG-AIVINTAR  134 (199)
T ss_dssp             GGGTTSBCHHHHHHSCTT-EEEEECSC
T ss_pred             ccccccccHHHhhccCCc-eEEEeccc
Confidence            221    14567788886 77777653

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=90.18  E-value=0.21  Score=41.47  Aligned_cols=35  Identities=34%  Similarity=0.375  Sum_probs=31.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~  234 (385)
                      --.|.+|+|.|.|.+|..+++++...|+ +|++++.
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD   62 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSD   62 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeec
Confidence            3578999999999999999999999999 7887753

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.16  E-value=0.13  Score=42.78  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=29.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      -|+|+|+|+.|++++..|...|. +|++++.+++
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            38999999999999999988998 8999987754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=90.13  E-value=0.47  Score=36.91  Aligned_cols=95  Identities=14%  Similarity=0.066  Sum_probs=57.1

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCC--CCCchhHHHHhhCCCccEEEEccCChHH
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK--NCGDKSIIIDMTDGGADYCFECVGLASL  282 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~--~~~~~~~i~~~~~g~~d~vid~~g~~~~  282 (385)
                      |-|+|.|.+|...+.-+...|+ .|.+.++++++.+.+.+.+........  .......+.... ...+.++.++.....
T Consensus         4 IGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           4 VGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASL-KKPRKALILVQAGAA   81 (178)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHB-CSSCEEEECCCCSHH
T ss_pred             EEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhc-ccceEEEEeecCcch
Confidence            7788999999998888888899 899999999999887766542111000  000111122221 135566666655432


Q ss_pred             H----HHHHHHhccCCceEEEecc
Q 016660          283 V----QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       283 ~----~~~~~~l~~~~G~~v~~g~  302 (385)
                      +    ......+.++ ..++..+.
T Consensus        82 ~~~~~~~~~~~~~~~-~iii~~st  104 (178)
T d1pgja2          82 TDSTIEQLKKVFEKG-DILVDTGN  104 (178)
T ss_dssp             HHHHHHHHHHHCCTT-CEEEECCC
T ss_pred             hhhhhhhhhhhcccc-ceecccCc
Confidence            3    4555566664 55555543

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=90.02  E-value=1.4  Score=33.94  Aligned_cols=94  Identities=23%  Similarity=0.337  Sum_probs=58.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcC---CchHHHHHHHc----C---CC-------------e--EEeCCCCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDV---ISEKFEIGKRF----G---VT-------------E--FVNSKNCG  257 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~---~~~~~~~~~~l----g---~~-------------~--vv~~~~~~  257 (385)
                      +|.|.|-|-+|.++...+... .. .++++-.   +.+.+..+-++    |   .+             .  +++.++  
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~-~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~--   79 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKV-DIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD--   79 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSS-EEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS--
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCc-EEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCC--
Confidence            688999999999999877654 46 6666632   23444444431    1   10             0  111111  


Q ss_pred             chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          258 DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       258 ~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                       .. -..+..-++|+|+||+|--...+.+...+..+ .+-|.++..
T Consensus        80 -p~-~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~g-akkViiSaP  122 (169)
T d1u8fo1          80 -PS-KIKWGDAGAEYVVESTGVFTTMEKAGAHLQGG-AKRVIISAP  122 (169)
T ss_dssp             -GG-GCCTTTTTCCEEEECSSSCCSHHHHGGGGGGT-CSEEEESSC
T ss_pred             -hh-hCCccccCCCEEEEecceeccHHHHHHHHhcC-CceEeeccc
Confidence             11 11222227999999999876678888889886 777777654

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=90.00  E-value=2.2  Score=32.65  Aligned_cols=95  Identities=21%  Similarity=0.284  Sum_probs=57.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCch--HHHHHHHc----C---CC-------------e--EEeCCCCCc
Q 016660          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISE--KFEIGKRF----G---VT-------------E--FVNSKNCGD  258 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~--~~~~~~~l----g---~~-------------~--vv~~~~~~~  258 (385)
                      +|.|.|-|-+|.++.+.+... .. .|+++.....  .+..+-++    |   .+             .  ++..++  .
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i-~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~--p   79 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDI-EIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD--P   79 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS--G
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCe-EEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCC--h
Confidence            578899999999999988765 35 6666643322  22222221    1   11             1  111111  1


Q ss_pred             hhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCC
Q 016660          259 KSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       259 ~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      ..  ..+..-++|+|+||+|.-...+.+...+..+ .+-|.++...
T Consensus        80 ~~--i~W~~~gvDiViEcTG~f~t~~~~~~hl~~g-akkViiSaP~  122 (166)
T d1gado1          80 AN--LKWDEVGVDVVAEATGLFLTDETARKHITAG-AKKVVMTGPS  122 (166)
T ss_dssp             GG--GCHHHHTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCC
T ss_pred             HH--CCccccCCCEEEEccccccCHHHHHHHhcCC-CceEEeeccc
Confidence            11  1111127999999999877678888899886 7777776543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.93  E-value=0.21  Score=39.38  Aligned_cols=84  Identities=20%  Similarity=0.238  Sum_probs=55.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.|.+|.|+|.|.+|...+++++.+|. +|++.++++..       +.....  .+  .    .++.. ..|+|+-+++.
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~-------~~~~~~--~~--l----~ell~-~sDiv~~~~pl  102 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKE-------GPWRFT--NS--L----EEALR-EARAAVCALPL  102 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCC-------SSSCCB--SC--S----HHHHT-TCSEEEECCCC
T ss_pred             ccCceEEEeccccccccceeeeecccc-ccccccccccc-------cceeee--ec--h----hhhhh-ccchhhccccc
Confidence            358899999999999999999999999 89999876431       111111  11  1    12221 36888776653


Q ss_pred             h-HHH----HHHHHHhccCCceEEEec
Q 016660          280 A-SLV----QEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       280 ~-~~~----~~~~~~l~~~~G~~v~~g  301 (385)
                      . .+.    .+.++.++++ ..+|.+|
T Consensus       103 ~~~t~~li~~~~l~~mk~~-ailIN~~  128 (181)
T d1qp8a1         103 NKHTRGLVKYQHLALMAED-AVFVNVG  128 (181)
T ss_dssp             STTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred             ccccccccccceeeecccc-ceEEecc
Confidence            2 111    4677788886 7777776

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=89.90  E-value=0.56  Score=36.26  Aligned_cols=82  Identities=18%  Similarity=0.203  Sum_probs=52.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCEEEEE-cCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGV-DVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~-G~~~vi~~-~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      +|.|+|.|.+|...+..++.. ++ .++++ ++++++      .....+..+.+      .... ...+|+|+.|++...
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~-elvav~~~~~~~------~~~~~~~~~~~------~~~~-~~~~D~Vvi~tp~~~   70 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDM-DLVGIFSRRATL------DTKTPVFDVAD------VDKH-ADDVDVLFLCMGSAT   70 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSE-EEEEEEESSSCC------SSSSCEEEGGG------GGGT-TTTCSEEEECSCTTT
T ss_pred             eEEEECChHHHHHHHHHHHhCCCc-EEEEEEeccccc------ccccccccchh------hhhh-ccccceEEEeCCCcc
Confidence            589999999999888877754 66 45544 443322      11122222222      1111 236999999999887


Q ss_pred             HHHHHHHHhccCCceEEEe
Q 016660          282 LVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       282 ~~~~~~~~l~~~~G~~v~~  300 (385)
                      ..+.+.+++..| -.++..
T Consensus        71 h~~~a~~aL~aG-~~vv~~   88 (170)
T d1f06a1          71 DIPEQAPKFAQF-ACTVDT   88 (170)
T ss_dssp             HHHHHHHHHTTT-SEEECC
T ss_pred             cHHHHHHHHHCC-CcEEEe
Confidence            788999999995 555543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=89.88  E-value=0.14  Score=42.20  Aligned_cols=32  Identities=34%  Similarity=0.454  Sum_probs=28.0

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      |+|+|+|+.|++++..+...|+ +|++++..+.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            8899999999998888888999 8999987643

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=89.83  E-value=0.35  Score=37.34  Aligned_cols=95  Identities=18%  Similarity=0.225  Sum_probs=61.7

Q ss_pred             ccccchhhhhhhhhhhccCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCch
Q 016660          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK  259 (385)
Q Consensus       181 ~l~~~~~ta~~al~~~~~~~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~  259 (385)
                      .+||.....+..+.+..---.|.+|+|+|- ..+|.-...++...|+ +|+.+.+....+...                 
T Consensus        16 ~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t~~l~~~-----------------   77 (166)
T d1b0aa1          16 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFTKNLRHH-----------------   77 (166)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSCSCHHHH-----------------
T ss_pred             CCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhc-cccccccccchhHHH-----------------
Confidence            456544433332322222357999999996 7799999999999999 888886543322111                 


Q ss_pred             hHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          260 SIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       260 ~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                        ++     .+|+++-++|.+..+.  -+.++++ ..++.+|..
T Consensus        78 --~~-----~ADivI~a~G~p~~i~--~~~vk~g-~vvIDvGi~  111 (166)
T d1b0aa1          78 --VE-----NADLLIVAVGKPGFIP--GDWIKEG-AIVIDVGIN  111 (166)
T ss_dssp             --HH-----HCSEEEECSCCTTCBC--TTTSCTT-CEEEECCCE
T ss_pred             --Hh-----hhhHhhhhccCccccc--ccccCCC-cEEEecCce
Confidence              11     2788998888876443  3466775 777777753

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.83  E-value=0.18  Score=37.00  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      +..++++|+|+|.+|+=+++.++.+|. +|.++.+++.
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~   59 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASE   59 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccc
Confidence            345789999999999999999999999 8999977653

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.80  E-value=0.47  Score=40.48  Aligned_cols=76  Identities=12%  Similarity=0.114  Sum_probs=46.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch--HHHHHHHcCCCe-E-EeCCCCCchhHHHHhhCC-CccEEEEc
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVTE-F-VNSKNCGDKSIIIDMTDG-GADYCFEC  276 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~--~~~~~~~lg~~~-v-v~~~~~~~~~~i~~~~~g-~~d~vid~  276 (385)
                      .+|||+|+ |-+|...+..+...|+ +|+++++...  ....++.++... + +-.-+......+...... ..++++.+
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~   79 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL   79 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence            47999997 9999999998888899 8999876432  334455555431 1 111121222223333333 56788777


Q ss_pred             cCC
Q 016660          277 VGL  279 (385)
Q Consensus       277 ~g~  279 (385)
                      ...
T Consensus        80 a~~   82 (321)
T d1rpna_          80 AAQ   82 (321)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            653

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=89.66  E-value=1.6  Score=33.65  Aligned_cols=94  Identities=18%  Similarity=0.240  Sum_probs=56.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc----CCCEEEEEcC--CchHHHHHHHc-------CC-------------Ce--EEeCCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLC----GATRIIGVDV--ISEKFEIGKRF-------GV-------------TE--FVNSKN  255 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~----G~~~vi~~~~--~~~~~~~~~~l-------g~-------------~~--vv~~~~  255 (385)
                      +|.|.|-|-+|.++.+.+-..    .. .|+++..  +.+.+..+-++       ..             ..  ++..++
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~-~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~   81 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDI-EIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN   81 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSE-EEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCe-EEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence            578999999999999877543    23 5666642  22333333321       11             11  111111


Q ss_pred             CCchhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          256 CGDKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       256 ~~~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      +   .. ..+..-++|+|+||+|.-...+.+...|..+ .+-|.++..
T Consensus        82 p---~~-i~W~~~gvDiViEcTG~f~~~~~a~~hl~~G-akkViiSAP  124 (173)
T d1obfo1          82 P---AQ-LPWGALKVDVVLECTGFFTTKEKAGAHIKGG-AKKVIISAP  124 (173)
T ss_dssp             G---GG-SCTTTTTCSEEEECSSSCCSHHHHHHHHHHT-CSEEEESSC
T ss_pred             H---HH-CcccccccceEEEecccccCHHHHHHHhccC-CcceEEecC
Confidence            0   10 1122228999999999866677888899886 777777654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.65  E-value=0.41  Score=35.26  Aligned_cols=63  Identities=19%  Similarity=0.182  Sum_probs=49.6

Q ss_pred             hhhhccCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCC
Q 016660          193 AWRTANVEVGSTVVIF-GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (385)
Q Consensus       193 l~~~~~~~~~~~VlI~-G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~  255 (385)
                      ..+.+++..-+.+++. ..-..-+++.++++..|.+++++...+++..+.++++|++.++++..
T Consensus        57 ~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~~  120 (132)
T d1lssa_          57 TLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPEL  120 (132)
T ss_dssp             HHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHHH
T ss_pred             hhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHHH
Confidence            4456677777766655 34456678889999999988999988899999999999999987644

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.62  E-value=0.66  Score=35.02  Aligned_cols=40  Identities=28%  Similarity=0.340  Sum_probs=32.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHH
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKF  239 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~  239 (385)
                      ..+.+|.|+|+|.+|...+..+...+ +++++.+|..+++.
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~   44 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKA   44 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccc
Confidence            34678999999999999888888776 45799999887763

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.59  E-value=0.3  Score=35.76  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .++++|+|+|.+|+=++..++.+|. +|..+.+++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            3689999999999999999999999 899998764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.50  E-value=0.16  Score=41.21  Aligned_cols=31  Identities=16%  Similarity=0.335  Sum_probs=27.9

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      |+|+|+|..|+.++..+...|. +|.+++..+
T Consensus         8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            8899999999999999888998 899998764

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=89.46  E-value=0.28  Score=43.16  Aligned_cols=76  Identities=16%  Similarity=0.205  Sum_probs=44.9

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch--HHHHHHHcC-CCeE-EeCCCCCchhHHHHhhCC-CccEEEEcc
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFG-VTEF-VNSKNCGDKSIIIDMTDG-GADYCFECV  277 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~--~~~~~~~lg-~~~v-v~~~~~~~~~~i~~~~~g-~~d~vid~~  277 (385)
                      +|||+|+ |-+|...+..+...|++.|++++....  +.+....+. ...+ +-..+......+..+..+ .+|+||+++
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~VihlA   81 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLA   81 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEECc
Confidence            5899987 999999999998889866777764221  111222221 1111 111222223334554445 799999998


Q ss_pred             CC
Q 016660          278 GL  279 (385)
Q Consensus       278 g~  279 (385)
                      ..
T Consensus        82 a~   83 (361)
T d1kewa_          82 AE   83 (361)
T ss_dssp             SC
T ss_pred             cc
Confidence            63

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=89.44  E-value=0.49  Score=39.13  Aligned_cols=96  Identities=17%  Similarity=0.188  Sum_probs=59.9

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-eE-EeCCCCCchhHHHHh-hCCCc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF-VNSKNCGDKSIIIDM-TDGGA  270 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~v-v~~~~~~~~~~i~~~-~~g~~  270 (385)
                      -.+++++||=+|+|. |..+..+++. |...|+++|.+++.++.+++    ++.. .+ +-..+  ...  ..+ .++.|
T Consensus        21 ~~~~~~~VLDlGCG~-G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D--~~~--~~~~~~~~f   94 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGK-GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD--SYG--RHMDLGKEF   94 (252)
T ss_dssp             HCCTTCEEEEETCTT-TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESC--TTT--SCCCCSSCE
T ss_pred             hCCCcCEEEEecccC-cHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcc--hhh--hcccccccc
Confidence            357899999999865 5556677665 54489999999998887764    3322 22 11111  000  011 12379


Q ss_pred             cEEEEccCC------h----HHHHHHHHHhccCCceEEEe
Q 016660          271 DYCFECVGL------A----SLVQEAYACCRKGWGKTIVL  300 (385)
Q Consensus       271 d~vid~~g~------~----~~~~~~~~~l~~~~G~~v~~  300 (385)
                      |+|+.....      .    ..++.+.+.|+++ |.++..
T Consensus        95 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g-G~~i~~  133 (252)
T d1ri5a_          95 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPG-GYFIMT  133 (252)
T ss_dssp             EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred             eEEEEcceeeecCCCHHHHHHHHHHHhceeCCC-CEEEEE
Confidence            999764322      1    2456778899997 988754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=89.39  E-value=0.26  Score=38.02  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCCc
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVIS  236 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~  236 (385)
                      .|.+|+|+|+|.+|+.+++.++..+.+ +|++++..+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            478999999999999999998887743 788887654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.23  E-value=0.29  Score=35.95  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      +..++++|+|+|.+|+=+++.++.+|. +|..+...+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence            345889999999999999999999999 888887654

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.21  E-value=1.7  Score=36.50  Aligned_cols=100  Identities=11%  Similarity=0.174  Sum_probs=59.6

Q ss_pred             hccCCCCCEEEEEcC--CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCeEE-eCCCCCchhHHHHhhCC
Q 016660          196 TANVEVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFV-NSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~--g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vv-~~~~~~~~~~i~~~~~g  268 (385)
                      ....+++++||=.-|  |+=..   ++|..+.-..|++.+.++.|...++    .+|...+. ...+ ...  ......+
T Consensus        97 ~L~~~~g~~vLD~CAaPGgKt~---~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~-~~~--~~~~~~~  170 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGKTT---HILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG-RYP--SQWCGEQ  170 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHH---HHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT-TCT--HHHHTTC
T ss_pred             ccCccccceeEeccCccccchh---hhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc-ccc--chhcccc
Confidence            346788999988744  44433   3333333238999999999987554    57876433 2222 111  1222334


Q ss_pred             CccEE-EE--ccCCh-------------------------HHHHHHHHHhccCCceEEEecc
Q 016660          269 GADYC-FE--CVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       269 ~~d~v-id--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .||.| +|  |+|..                         ..+..+++.++++ |++|+.--
T Consensus       171 ~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g-G~lvYsTC  231 (284)
T d1sqga2         171 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVYATC  231 (284)
T ss_dssp             CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEEEES
T ss_pred             cccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC-ceEEEeee
Confidence            79877 56  55542                         3355677788886 88776543

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.20  E-value=0.32  Score=35.31  Aligned_cols=88  Identities=11%  Similarity=-0.007  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCCHH-----------HHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-
Q 016660          201 VGSTVVIFGLGSI-----------GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-  268 (385)
Q Consensus       201 ~~~~VlI~G~g~v-----------G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-  268 (385)
                      ...+|||+|+|+.           +.-+++.+|..|+ ++|.+.++++....-..+ +++++  -++-..+.+.....- 
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPeTVstd~d~-aD~lY--feplt~e~v~~Ii~~E   78 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPETVSTDYDT-SDRLY--FEPVTLEDVLEIVRIE   78 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTTSSTTSTTS-SSEEE--CCCCSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChhhhhcChhh-cCceE--EccCCHHHHHHHHHHh
Confidence            3468999998753           3456666667799 888998888765432221 23332  121222233332222 


Q ss_pred             CccEEEEccCChHHHHHHHHHhcc
Q 016660          269 GADYCFECVGLASLVQEAYACCRK  292 (385)
Q Consensus       269 ~~d~vid~~g~~~~~~~~~~~l~~  292 (385)
                      .+|.|+=..|+...++.+..+-+.
T Consensus        79 ~p~~ii~~~GGQtalnla~~L~~~  102 (121)
T d1a9xa4          79 KPKGVIVQYGGQTPLKLARALEAA  102 (121)
T ss_dssp             CCSEEECSSSTHHHHTTHHHHHHT
T ss_pred             CCCEEEeehhhhhHHHHHHHHHHc
Confidence            567777777777766555554443

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=89.13  E-value=0.37  Score=36.78  Aligned_cols=42  Identities=24%  Similarity=0.243  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  240 (385)
                      .++..+|.|+|+|.+|...+.++...+...++.++.++++.+
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~   45 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPE   45 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccch
Confidence            356678999999999998888888888768999988876544

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=89.10  E-value=0.24  Score=39.45  Aligned_cols=90  Identities=21%  Similarity=0.220  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL  279 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~  279 (385)
                      -.|.+|.|+|.|.+|...+++++.+|+ +|++.++..... .....+....   .   ....+..    ..|+|.-+.+.
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-~~~~~~~~~~---~---~l~~ll~----~sD~i~~~~pl  114 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQRV---S---TLQDLLF----HSDCVTLHCGL  114 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEEC---S---SHHHHHH----HCSEEEECCCC
T ss_pred             eeCceEEEeccccccccceeeeecccc-ceeeccCccccc-chhhhccccc---c---chhhccc----cCCEEEEeecc
Confidence            467899999999999999999999999 899998654432 2223343211   1   1111222    15777655442


Q ss_pred             -hHH---H-HHHHHHhccCCceEEEecc
Q 016660          280 -ASL---V-QEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 -~~~---~-~~~~~~l~~~~G~~v~~g~  302 (385)
                       +.+   + .+.+..|+++ ..+|.++-
T Consensus       115 t~~T~~li~~~~l~~mk~~-a~lIN~sR  141 (193)
T d1mx3a1         115 NEHNHHLINDFTVKQMRQG-AFLVNTAR  141 (193)
T ss_dssp             CTTCTTSBSHHHHTTSCTT-EEEEECSC
T ss_pred             cccchhhhhHHHHhccCCC-CeEEecCC
Confidence             211   1 3556777775 66666653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=0.62  Score=37.58  Aligned_cols=97  Identities=15%  Similarity=0.075  Sum_probs=62.9

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcC----CCeEEeCCCCCchhHHHHh--hCCCcc
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----VTEFVNSKNCGDKSIIIDM--TDGGAD  271 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg----~~~vv~~~~~~~~~~i~~~--~~g~~d  271 (385)
                      ...++.+||=+|+|. |..+..+++..+. +|++++.+++-++.+++.-    ...+ .....+    +..+  ..+.||
T Consensus        57 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~-~f~~~d----~~~~~~~~~~fD  129 (222)
T d2ex4a1          57 NKTGTSCALDCGAGI-GRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVR-NYFCCG----LQDFTPEPDSYD  129 (222)
T ss_dssp             -CCCCSEEEEETCTT-THHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEE-EEEECC----GGGCCCCSSCEE
T ss_pred             CCCCCCEEEEeccCC-CHhhHHHHHhcCC-EEEEeecCHHHhhcccccccccccccc-cccccc----cccccccccccc
Confidence            456778899999866 7777777766555 8999999999888887642    2211 111111    1222  223799


Q ss_pred             EEEEcc-----CCh---HHHHHHHHHhccCCceEEEecc
Q 016660          272 YCFECV-----GLA---SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       272 ~vid~~-----g~~---~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +|+...     ..+   ..++.+.+.|+++ |.++..-.
T Consensus       130 ~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~-G~~~i~~~  167 (222)
T d2ex4a1         130 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPN-GIIVIKDN  167 (222)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             ccccccccccchhhhhhhHHHHHHHhcCCc-ceEEEEEc
Confidence            998632     222   3578889999997 98887643

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.07  E-value=0.58  Score=35.20  Aligned_cols=39  Identities=18%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEcCCchHHHH
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISEKFEI  241 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~  241 (385)
                      .+|.|+|| |.+|...+.++...|. +.++.++..+.+-+.
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a   41 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA   41 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh
Confidence            36899997 9999999999988875 689999887655433

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.05  E-value=0.43  Score=41.35  Aligned_cols=75  Identities=17%  Similarity=0.158  Sum_probs=46.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC----------CchHHHHHHHcCCC--eEEeCCCCCchhHHHHhhCC-
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV----------ISEKFEIGKRFGVT--EFVNSKNCGDKSIIIDMTDG-  268 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~----------~~~~~~~~~~lg~~--~vv~~~~~~~~~~i~~~~~g-  268 (385)
                      ++|||+|+ |-+|...+..+...|+ .|+++++          ..++.+....+...  .++.. +......+.....+ 
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~d~~~l~~~~~~~   80 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEM-DILDQGALQRLFKKY   80 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEEC-CTTCHHHHHHHHHHC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEe-ecccccccccccccc
Confidence            68999997 9999999999999998 7888753          12333333333221  23322 21233334444444 


Q ss_pred             CccEEEEccCC
Q 016660          269 GADYCFECVGL  279 (385)
Q Consensus       269 ~~d~vid~~g~  279 (385)
                      ..++++++++.
T Consensus        81 ~~~~i~h~Aa~   91 (346)
T d1ek6a_          81 SFMAVIHFAGL   91 (346)
T ss_dssp             CEEEEEECCSC
T ss_pred             ccccccccccc
Confidence            78899988764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=88.95  E-value=0.14  Score=43.10  Aligned_cols=32  Identities=31%  Similarity=0.387  Sum_probs=28.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      +|+|+|+|..|+.++..+...|+ +|++++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            48999999999999999999999 799998653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.86  E-value=0.26  Score=36.02  Aligned_cols=34  Identities=12%  Similarity=0.039  Sum_probs=28.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      ..++++|+|+|.+|+=.++.++.+|. +|..+.++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            34679999999999999999999999 67777553

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=88.83  E-value=0.46  Score=40.97  Aligned_cols=98  Identities=13%  Similarity=0.114  Sum_probs=59.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCCe--EEeCCCCCchhHHHHhh-CC-Cc
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSIIIDMT-DG-GA  270 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~--vv~~~~~~~~~~i~~~~-~g-~~  270 (385)
                      ..+|++||=.++|. |..++++|+  |..+|++++.+++.++++++    .|.+.  ++..+   .......+. .+ .|
T Consensus       143 ~~~g~rVLDl~~gt-G~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d---~~~~~~~~~~~~~~f  216 (318)
T d1wxxa2         143 RFRGERALDVFSYA-GGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEAN---AFDLLRRLEKEGERF  216 (318)
T ss_dssp             GCCEEEEEEETCTT-THHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESC---HHHHHHHHHHTTCCE
T ss_pred             HhCCCeeeccCCCC-cHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeecc---HHHHhhhhHhhhcCC
Confidence            34688998886533 333445554  33489999999998887764    45542  22221   222222222 23 79


Q ss_pred             cEEE-Ecc--C--C----------hHHHHHHHHHhccCCceEEEeccC
Q 016660          271 DYCF-ECV--G--L----------ASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       271 d~vi-d~~--g--~----------~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      |+|+ |.-  +  .          ...+..+++++++| |.++++...
T Consensus       217 D~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG-G~Lv~~scs  263 (318)
T d1wxxa2         217 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG-GILATASCS  263 (318)
T ss_dssp             EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE-EEEEEEECC
T ss_pred             CEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCC
Confidence            9887 321  1  1          13356788899997 999887764

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=88.79  E-value=1.2  Score=37.84  Aligned_cols=97  Identities=19%  Similarity=0.169  Sum_probs=63.2

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--CchHHHHHHHcCCCeEEeCCCC----------------
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSKNC----------------  256 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~lg~~~vv~~~~~----------------  256 (385)
                      +...+.++.+|+...+|.-|++++..++..|++-+|++..  +..|...++.+|+..+......                
T Consensus        54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~  133 (310)
T d1y7la1          54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASD  133 (310)
T ss_dssp             HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC
T ss_pred             HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhh
Confidence            3344567776666677999999999999999976666644  3456777888888655421110                


Q ss_pred             ----------Cc-h----------hHHHHhhCCCccEEEEccCChHHHHHHHHHhc
Q 016660          257 ----------GD-K----------SIIIDMTDGGADYCFECVGLASLVQEAYACCR  291 (385)
Q Consensus       257 ----------~~-~----------~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~  291 (385)
                                .. .          ..+.+..++.+|.|+-++|+...+.-....++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk  189 (310)
T d1y7la1         134 PSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIK  189 (310)
T ss_dssp             TTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHH
T ss_pred             cCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHH
Confidence                      00 0          01233334468999999988876666666554

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=88.67  E-value=1.2  Score=38.43  Aligned_cols=76  Identities=12%  Similarity=0.110  Sum_probs=46.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHH--HHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEcc
Q 016660          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE--IGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       201 ~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~--~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~  277 (385)
                      +..+|||+|+ |.+|...+..+...|+ +|+++.++.++..  .+..+....++..+-.+....+..... +.|.++...
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~-~~~~~~~~~   79 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE-GAHLAFINT   79 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT-TCSEEEECC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhc-CCceEEeec
Confidence            5678999997 9999999999999999 7888877655433  223332223332222122222334433 567766544


Q ss_pred             C
Q 016660          278 G  278 (385)
Q Consensus       278 g  278 (385)
                      .
T Consensus        80 ~   80 (350)
T d1xgka_          80 T   80 (350)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=88.56  E-value=0.79  Score=38.32  Aligned_cols=36  Identities=17%  Similarity=0.185  Sum_probs=26.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-CchHHH
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFE  240 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~  240 (385)
                      .+||.|+ +++|.+.++.+...|+ +|+.+.+ ++++.+
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~   41 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEAN   41 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCCHHHHH
Confidence            3567787 9999999999999999 7776544 444443

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.53  E-value=0.77  Score=35.52  Aligned_cols=95  Identities=15%  Similarity=0.257  Sum_probs=62.5

Q ss_pred             cccccchhhhhhhhhhhccC-CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCC
Q 016660          180 CLLSCGVSTGVGAAWRTANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  257 (385)
Q Consensus       180 a~l~~~~~ta~~al~~~~~~-~~~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~  257 (385)
                      +.+||.....+. +.+..++ -.|.+|+|+|. ..+|.-...++...|+ .|+.+.+.......                
T Consensus        17 ~~~PcTp~aii~-lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t~~l~~----------------   78 (170)
T d1a4ia1          17 CFIPCTPKGCLE-LIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHLDE----------------   78 (170)
T ss_dssp             CCCCHHHHHHHH-HHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSHHH----------------
T ss_pred             CCCCChHHHHHH-HHHHhCcccccceEEEEecCCccchHHHHHHHhccC-ceEEEecccccHHH----------------
Confidence            456765554444 3344343 47899999996 7899999999999999 88888654333221                


Q ss_pred             chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          258 DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       258 ~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                             .+. ..|+++-++|.+..+.  -+.++++ ..++.+|..
T Consensus        79 -------~~~-~aDivi~a~G~~~~i~--~~~vk~g-~iviDvgi~  113 (170)
T d1a4ia1          79 -------EVN-KGDILVVATGQPEMVK--GEWIKPG-AIVIDCGIN  113 (170)
T ss_dssp             -------HHT-TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCB
T ss_pred             -------HHh-hccchhhccccccccc--cccccCC-CeEeccCcc
Confidence                   111 3678888888776433  3467775 667777653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.26  E-value=0.21  Score=38.98  Aligned_cols=29  Identities=31%  Similarity=0.231  Sum_probs=26.2

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~  234 (385)
                      |+|+|+|+.|+.++..|...|. +|++++.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~-~v~iie~   32 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGI-RTGLMGE   32 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             EEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence            8899999999999999999999 7888864

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.23  E-value=0.74  Score=39.67  Aligned_cols=101  Identities=16%  Similarity=0.159  Sum_probs=65.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCCchHHHHH----HHcCCCeEEeCCCCCchhHHHHhhCCCccEEE
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSIIIDMTDGGADYCF  274 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~-~~G~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vi  274 (385)
                      +...++.|+|+|..+...++.+. .+..++|.+..+++++.+..    +..+.....+.     .+   ..  .+.|+|+
T Consensus       123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~-----~~---a~--~~aDiV~  192 (320)
T d1omoa_         123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQP-----AE---EA--SRCDVLV  192 (320)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECC-----HH---HH--TSSSEEE
T ss_pred             CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccch-----hh---hh--ccccEEE
Confidence            44578899999999988777776 56788999999998876533    33444433221     11   11  2589999


Q ss_pred             EccCChHHHHHHHHHhccCCceEEEeccCCCCCcccccH
Q 016660          275 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS  313 (385)
Q Consensus       275 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~  313 (385)
                      -++.+..-+ --.+.++++ -.+..+|...+ ..-.++.
T Consensus       193 taT~s~~P~-~~~~~l~~G-~hv~~iGs~~p-~~~Eld~  228 (320)
T d1omoa_         193 TTTPSRKPV-VKAEWVEEG-THINAIGADGP-GKQELDV  228 (320)
T ss_dssp             ECCCCSSCC-BCGGGCCTT-CEEEECSCCST-TCCCBCH
T ss_pred             EeccCcccc-cchhhcCCC-CeEeecCCccc-cccccCH
Confidence            888765422 112468886 78888887542 2334443

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.05  E-value=0.22  Score=42.67  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=28.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      -.|+|+|||..|++++..++..|. .|++++..+
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGR-SVHVIETAG   40 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCC-CEEEEEcCC
Confidence            348999999999999999999999 788898654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.01  E-value=0.14  Score=40.54  Aligned_cols=35  Identities=20%  Similarity=0.215  Sum_probs=29.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .++..|+|+|+|+.|+.++..|...|. +|++++..
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~   37 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANL-QPVLITGM   37 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEee
Confidence            345679999999999999999999999 78888654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=87.86  E-value=1.2  Score=33.46  Aligned_cols=39  Identities=28%  Similarity=0.413  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHHH
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFE  240 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~  240 (385)
                      ..+|.|+|+|.+|...+..+...| ++.++.+|..+++.+
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~   44 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTK   44 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhH
Confidence            457999999999999888887776 458999998876543

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=87.85  E-value=0.26  Score=41.38  Aligned_cols=61  Identities=18%  Similarity=0.346  Sum_probs=38.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCC
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGL  279 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~  279 (385)
                      +|||.|+ |-+|...+..+...|.  +++++.....      +-    .|..   ....+.+...+ ++|+||++++.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~--~v~~~~~~~~------~~----~Dl~---~~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGN--LIALDVHSKE------FC----GDFS---NPKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSE--EEEECTTCSS------SC----CCTT---CHHHHHHHHHHHCCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC--EEEEECCCcc------cc----CcCC---CHHHHHHHHHHcCCCEEEEeccc
Confidence            5899997 9999999888877774  5555544321      11    1221   22234454445 78999999863

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.79  E-value=0.74  Score=39.64  Aligned_cols=32  Identities=31%  Similarity=0.273  Sum_probs=27.9

Q ss_pred             EE-EEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          204 TV-VIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       204 ~V-lI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      +| ||+|+ |-+|...+..+...|+ +|+++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            57 99987 9999999999988999 899998754

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=87.75  E-value=1.3  Score=34.14  Aligned_cols=97  Identities=18%  Similarity=0.253  Sum_probs=56.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCC--chHHHHHHHc--------------------CCCeEEeCCCCCchh
Q 016660          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDVI--SEKFEIGKRF--------------------GVTEFVNSKNCGDKS  260 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~--~~~~~~~~~l--------------------g~~~vv~~~~~~~~~  260 (385)
                      +|.|.|-|-+|.++...+... .. .++++-..  .+.+..+-++                    +-..+.-+.+.+...
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~-~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~~   81 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDI-EVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN   81 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTE-EEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCc-EEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHHH
Confidence            578899999999988777543 45 66666322  2223333221                    111111111100100


Q ss_pred             HHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCC
Q 016660          261 IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       261 ~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                        ..+..-++|+|+||+|.-...+.+...+..+ .+-|.++...
T Consensus        82 --i~W~~~~vDiViEcTG~f~t~~~~~~hl~~g-akkViiSap~  122 (171)
T d3cmco1          82 --LAWGEIGVDIVVESTGRFTKREDAAKHLEAG-AKKVIISAPA  122 (171)
T ss_dssp             --CCTGGGTCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred             --ccccccCCcEEEEecCccCCHHHHHHHHhCC-CceEEEeccc
Confidence              1111227999999999877788888889886 7667776543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.73  E-value=0.39  Score=34.92  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      +.+.+++|+|+|.+|+=+++.+...|. +|..+.+++
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence            445789999999999999999999999 888887654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=87.63  E-value=2.1  Score=32.84  Aligned_cols=93  Identities=22%  Similarity=0.194  Sum_probs=53.3

Q ss_pred             cCCCCCEEEEEcC--CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCC-eEEeCCCCCchhHH--HHhhCC
Q 016660          198 NVEVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFVNSKNCGDKSII--IDMTDG  268 (385)
Q Consensus       198 ~~~~~~~VlI~G~--g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~vv~~~~~~~~~~i--~~~~~g  268 (385)
                      .+.++.+||=.++  |.+|+   . |...|+ +|++++.+++..+.++    .+|.. .+...+.   ....  ......
T Consensus        38 ~~~~g~~vLDl~~G~G~~~i---~-a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~---d~~~~~~~~~~~  109 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGSGAVGL---E-AASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPV---EVFLPEAKAQGE  109 (171)
T ss_dssp             HCTTCCEEEEETCSSCHHHH---H-HHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH---HHHHHHHHHTTC
T ss_pred             cccCCCeEEEeccccchhhh---h-hhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeeh---hcccccccccCC
Confidence            4678888887754  55554   3 334688 7889999998887665    35553 3433222   1111  122233


Q ss_pred             CccEEE-Ec---cCChHHHHHHHH--HhccCCceEEE
Q 016660          269 GADYCF-EC---VGLASLVQEAYA--CCRKGWGKTIV  299 (385)
Q Consensus       269 ~~d~vi-d~---~g~~~~~~~~~~--~l~~~~G~~v~  299 (385)
                      .||+|| |.   .+....+..++.  .++++ |.++.
T Consensus       110 ~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~-g~ivi  145 (171)
T d1ws6a1         110 RFTVAFMAPPYAMDLAALFGELLASGLVEAG-GLYVL  145 (171)
T ss_dssp             CEEEEEECCCTTSCTTHHHHHHHHHTCEEEE-EEEEE
T ss_pred             ccceeEEccccccCHHHHHHHHHHcCCcCCC-eEEEE
Confidence            799996 42   233333444433  47775 76554

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.62  E-value=0.6  Score=40.36  Aligned_cols=38  Identities=16%  Similarity=0.014  Sum_probs=29.4

Q ss_pred             CCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCCchHHH
Q 016660          202 GSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (385)
Q Consensus       202 ~~~VlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  240 (385)
                      ++..||.|+   .++|.+.++.+-..|+ +|+.+.+++....
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA-~V~i~~~~~~~~~   42 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVYNI   42 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECGGGHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCC-EEEEEeCchhhhh
Confidence            466788895   3899999999999999 7888766655433

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.56  E-value=0.41  Score=38.28  Aligned_cols=40  Identities=38%  Similarity=0.591  Sum_probs=35.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  244 (385)
                      +|.|+|.|-+|+.++..+...|. +|++.|.++++.+.+.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence            47889999999998888888899 89999999998887765

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.36  E-value=0.35  Score=41.01  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~  233 (385)
                      -++.+|+|.|.|.+|..+++++...|+ +|+++.
T Consensus        34 L~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vs   66 (293)
T d1hwxa1          34 FGDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVG   66 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            367899999999999999999999999 788775

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.26  E-value=0.24  Score=39.87  Aligned_cols=30  Identities=30%  Similarity=0.292  Sum_probs=26.9

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      |+|+|+|+.|+.++..|...|. +|++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~-kV~vie~~   35 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKR   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            7899999999999999999999 78888754

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=87.18  E-value=0.89  Score=37.16  Aligned_cols=93  Identities=8%  Similarity=-0.029  Sum_probs=58.1

Q ss_pred             CEEEEEcCCH----HHHHHHHHHHHc--CCCEEEE-EcCCchHHH-HHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEE
Q 016660          203 STVVIFGLGS----IGLAVAEGARLC--GATRIIG-VDVISEKFE-IGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYC  273 (385)
Q Consensus       203 ~~VlI~G~g~----vG~~ai~la~~~--G~~~vi~-~~~~~~~~~-~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~v  273 (385)
                      =+|.|+|.|.    ++...+..++..  ++ ++++ .+++.++.+ .+++++....-.+.+      ..++... .+|+|
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~iD~V   89 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSLQTIEQLQLKHATGFDS------LESFAQYKDIDMI   89 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHHHHHHHTTCTTCEEESC------HHHHHHCTTCSEE
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHHHHHHhcccccceeecc------hhhccccccccee
Confidence            4688999765    445555555543  56 5664 566665544 566777654333333      2333333 79999


Q ss_pred             EEccCChHHHHHHHHHhccC----CceEEEecc
Q 016660          274 FECVGLASLVQEAYACCRKG----WGKTIVLGV  302 (385)
Q Consensus       274 id~~g~~~~~~~~~~~l~~~----~G~~v~~g~  302 (385)
                      +.++......+.+..++..|    .++-|++..
T Consensus        90 ~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EK  122 (237)
T d2nvwa1          90 VVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEW  122 (237)
T ss_dssp             EECSCHHHHHHHHHHHHHHSSSCSSCCEEEEES
T ss_pred             eccCCCcchhhHHHHHHHhcccccCCceEEEec
Confidence            99999888788888888763    134566654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=87.13  E-value=0.61  Score=37.72  Aligned_cols=93  Identities=12%  Similarity=0.019  Sum_probs=57.7

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCe--EEeCCCCCchhHHHHh-hCCCccEE
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSIIIDM-TDGGADYC  273 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~--vv~~~~~~~~~~i~~~-~~g~~d~v  273 (385)
                      .+..++.+||=+|+|. |..+..+++ .|. +|++++.+++.++.+++...+.  ++.. +  .    ... .++.||+|
T Consensus        16 ~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~-~--~----~~~~~~~~fD~I   85 (225)
T d2p7ia1          16 TPFFRPGNLLELGSFK-GDFTSRLQE-HFN-DITCVEASEEAISHAQGRLKDGITYIHS-R--F----EDAQLPRRYDNI   85 (225)
T ss_dssp             GGGCCSSCEEEESCTT-SHHHHHHTT-TCS-CEEEEESCHHHHHHHHHHSCSCEEEEES-C--G----GGCCCSSCEEEE
T ss_pred             hhhCCCCcEEEEeCCC-cHHHHHHHH-cCC-eEEEEeCcHHHhhhhhcccccccccccc-c--c----cccccccccccc
Confidence            3445677899998865 666666654 477 7999999999999888654332  2221 1  1    111 13379999


Q ss_pred             EEcc-----CCh-HHHHHHH-HHhccCCceEEEe
Q 016660          274 FECV-----GLA-SLVQEAY-ACCRKGWGKTIVL  300 (385)
Q Consensus       274 id~~-----g~~-~~~~~~~-~~l~~~~G~~v~~  300 (385)
                      +-.-     ..+ ..+.++. ++|+++ |.++..
T Consensus        86 ~~~~vleh~~d~~~~l~~i~~~~Lk~g-G~l~i~  118 (225)
T d2p7ia1          86 VLTHVLEHIDDPVALLKRINDDWLAEG-GRLFLV  118 (225)
T ss_dssp             EEESCGGGCSSHHHHHHHHHHTTEEEE-EEEEEE
T ss_pred             cccceeEecCCHHHHHHHHHHHhcCCC-ceEEEE
Confidence            7422     122 2245555 578996 877754

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.13  E-value=0.33  Score=40.16  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=28.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      .|||.|+ +++|.+.++.+...|+ +|+.++++++
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~   36 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA   36 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence            5788887 9999999999999999 8988887643

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=87.09  E-value=0.34  Score=40.39  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=30.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~  233 (385)
                      --++.+|+|.|.|.+|..+++++...|+ +|+++.
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavs   66 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLS   66 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEe
Confidence            3478999999999999999999999999 777764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.02  E-value=0.52  Score=36.86  Aligned_cols=86  Identities=13%  Similarity=-0.054  Sum_probs=47.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCch--HHHHHHHcCCCeEEeCCCC----CchhHHHHhhCCCccEEEEcc
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVTEFVNSKNC----GDKSIIIDMTDGGADYCFECV  277 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~--~~~~~~~lg~~~vv~~~~~----~~~~~i~~~~~g~~d~vid~~  277 (385)
                      +|.|+|+|..|.+.+..+-..|. .|....+..+  ..+...+-.-...+...-.    .....+.+.. ...|+|+-++
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~ad~Ii~av   79 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL-ENAEVVLLGV   79 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH-TTCSEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHH-hccchhhccc
Confidence            57899999999998888877787 7888866333  2333322111000000000    0000122221 2589999999


Q ss_pred             CChHHHHHHHHHhcc
Q 016660          278 GLASLVQEAYACCRK  292 (385)
Q Consensus       278 g~~~~~~~~~~~l~~  292 (385)
                      .... +...++.+.+
T Consensus        80 ps~~-~~~~~~~l~~   93 (180)
T d1txga2          80 STDG-VLPVMSRILP   93 (180)
T ss_dssp             CGGG-HHHHHHHHTT
T ss_pred             chhh-hHHHHHhhcc
Confidence            9876 5555554433

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=86.86  E-value=1.8  Score=31.26  Aligned_cols=92  Identities=15%  Similarity=0.024  Sum_probs=58.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChHH-
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLASL-  282 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~~-  282 (385)
                      .++|.|.|.+|...++.++  +. .|++++.++++.+.++..|...+ .. +......+++..-..++.++-+...... 
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i-~G-d~~~~~~L~~a~i~~A~~vi~~~~~d~~n   76 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFV-HG-DPTRVSDLEKANVRGARAVIVNLESDSET   76 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEE-ES-CTTSHHHHHHTTCTTCSEEEECCSSHHHH
T ss_pred             EEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCcccc-cc-ccCCHHHHHHhhhhcCcEEEEeccchhhh
Confidence            3788899999998887764  44 56778888999888888887543 33 3233333444333378888888776542 


Q ss_pred             --HHHHHHHhccCCceEEEec
Q 016660          283 --VQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       283 --~~~~~~~l~~~~G~~v~~g  301 (385)
                        +-...+.+.+. .+++...
T Consensus        77 ~~~~~~~r~~~~~-~~iia~~   96 (129)
T d2fy8a1          77 IHCILGIRKIDES-VRIIAEA   96 (129)
T ss_dssp             HHHHHHHHHHCSS-SCEEEEC
T ss_pred             HHHHHHHHHHCCC-ceEEEEE
Confidence              22334455554 5555554

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=86.65  E-value=0.24  Score=42.82  Aligned_cols=31  Identities=29%  Similarity=0.315  Sum_probs=25.1

Q ss_pred             EEEEcCCHHHHHHHHHH-----HHcCCCEEEEEcCCc
Q 016660          205 VVIFGLGSIGLAVAEGA-----RLCGATRIIGVDVIS  236 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la-----~~~G~~~vi~~~~~~  236 (385)
                      |+|+|+|++|++++.++     +..|+ +|+++++.+
T Consensus        10 V~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~   45 (360)
T d1pn0a1          10 VLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS   45 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence            89999999999877666     35799 788887654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.64  E-value=0.93  Score=35.99  Aligned_cols=69  Identities=17%  Similarity=0.263  Sum_probs=41.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCC-EEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      .+|||+|+ |-+|...+..+...|.. +|++..+.+..       ....+ .... .....+.....+..|.||+|+|..
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-------~~~~~-~~~~-~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------EHPRL-DNPV-GPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------CCTTE-ECCB-SCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-------hcccc-cccc-cchhhhhhccccchheeeeeeeee
Confidence            68999998 99999999988888852 56666543211       00111 1111 111223333344789999998764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.49  E-value=0.61  Score=35.43  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .-+.+|+|+|+|.+|+=++..|...|++.|+++.+.
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            346789999999999999999999999888887554

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=86.43  E-value=3.2  Score=31.42  Aligned_cols=41  Identities=24%  Similarity=0.385  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHH
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKF  239 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~  239 (385)
                      ..+..+|.|+|+|.+|..++..+...| +++++.++.++++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            345678999999999999999988887 46899998876654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.40  E-value=0.3  Score=39.18  Aligned_cols=30  Identities=23%  Similarity=0.327  Sum_probs=27.1

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      |+|+|+|+.|+.++..|..+|. +|.+++..
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            7899999999999999999999 78888764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=86.38  E-value=0.29  Score=38.03  Aligned_cols=32  Identities=41%  Similarity=0.465  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEE
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGV  232 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~-~vi~~  232 (385)
                      ++++|+|+|+|.+|+-++..++.+|.+ .|+..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~   34 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLV   34 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEe
Confidence            578999999999999999999999984 34444

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.30  E-value=0.27  Score=42.06  Aligned_cols=32  Identities=16%  Similarity=0.313  Sum_probs=28.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      .|+|+|||..|+.++..+...|. +|.+++..+
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence            38999999999999999988898 899998654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.27  E-value=0.28  Score=42.19  Aligned_cols=31  Identities=26%  Similarity=0.357  Sum_probs=27.6

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      |+|+|+|..|+.++..++..|. +|++++..+
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            7899999999999999999999 899997543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.22  E-value=2.2  Score=33.75  Aligned_cols=68  Identities=21%  Similarity=0.230  Sum_probs=42.0

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH----cCCC-eEEeCCCCCchhHHHHhhCCCccE
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSIIIDMTDGGADY  272 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~vv~~~~~~~~~~i~~~~~g~~d~  272 (385)
                      +--+|.+||=.|+|. |.+++.++ ..|+.+|++++.+++..+.+++    ++.. .++..+.       .. .++.||+
T Consensus        43 ~dl~g~~vLDlg~Gt-G~l~i~a~-~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~-------~~-~~~~fD~  112 (201)
T d1wy7a1          43 GDIEGKVVADLGAGT-GVLSYGAL-LLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDV-------SE-FNSRVDI  112 (201)
T ss_dssp             TSSTTCEEEEETCTT-CHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCG-------GG-CCCCCSE
T ss_pred             CCCCCCEEEECcCcc-hHHHHHHH-HcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECch-------hh-hCCcCcE
Confidence            344688898887643 33444433 4687799999999988887764    4443 2332221       11 2347999


Q ss_pred             EEE
Q 016660          273 CFE  275 (385)
Q Consensus       273 vid  275 (385)
                      ||-
T Consensus       113 Vi~  115 (201)
T d1wy7a1         113 VIM  115 (201)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.03  E-value=0.78  Score=34.68  Aligned_cols=40  Identities=18%  Similarity=0.192  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHH
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  240 (385)
                      |..+|.|+|+|.+|...+.++...+...++.++..+++.+
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~   41 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPH   41 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcce
Confidence            4568999999999998888888888889999998776543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=85.97  E-value=0.35  Score=40.22  Aligned_cols=32  Identities=22%  Similarity=0.113  Sum_probs=27.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      -|+|+|+|.+|+.++..+...|. +|++++..+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            38999999999998888888898 899998653

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.64  E-value=3.8  Score=31.20  Aligned_cols=95  Identities=18%  Similarity=0.205  Sum_probs=58.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcC---CchHHHHHHHc----C---C-------------Ce--EEeCCCCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDV---ISEKFEIGKRF----G---V-------------TE--FVNSKNCG  257 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~---~~~~~~~~~~l----g---~-------------~~--vv~~~~~~  257 (385)
                      +|.|.|-|-+|.++.+.+... .. .|+++-.   +.+.+..+-++    |   .             ..  ++..++  
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~-~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~--   78 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDI-EVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD--   78 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS--
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCc-EEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCC--
Confidence            578999999999999888744 45 6666632   23445555432    1   1             01  111111  


Q ss_pred             chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccCC
Q 016660          258 DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       258 ~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                       ...+ .+...++|+|+||+|.-...+.+...+..+ .+-|.++...
T Consensus        79 -p~~i-~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~  122 (166)
T d2b4ro1          79 -PSQI-PWGKCQVDVVCESTGVFLTKELASSHLKGG-AKKVIMSAPP  122 (166)
T ss_dssp             -GGGC-CHHHHTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCC
T ss_pred             -hHHc-cccccCCCEEEEecccccchhhhhhhhccC-CCEEEEeccc
Confidence             1111 111127999999999877678888899886 7777776543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=85.59  E-value=2.3  Score=34.73  Aligned_cols=99  Identities=13%  Similarity=0.074  Sum_probs=60.7

Q ss_pred             hhhccCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHH----HcCC-CeE-EeCCCCCchhHHHHhh
Q 016660          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGK----RFGV-TEF-VNSKNCGDKSIIIDMT  266 (385)
Q Consensus       194 ~~~~~~~~~~~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~----~lg~-~~v-v~~~~~~~~~~i~~~~  266 (385)
                      .....+....+||=+|+|. |..++.+++.. +. ++++++. ++..+.++    +.|. +++ +...+  .    .+..
T Consensus        73 ~~~~d~~~~~~VLDvGcG~-G~~~~~la~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D--~----~~~~  143 (253)
T d1tw3a2          73 AAAYDWTNVRHVLDVGGGK-GGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGD--F----FEPL  143 (253)
T ss_dssp             HHHSCCTTCSEEEEETCTT-SHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECC--T----TSCC
T ss_pred             HhhcCCccCCEEEEeCCCC-CHHHHHHHHhccee-EEEEccC-HHHHHHHHHHHHHhhcccchhhcccc--c----hhhc
Confidence            3445667788999998865 77888889876 45 8888886 44444443    3343 222 11111  1    1112


Q ss_pred             CCCccEEEEcc-----CCh---HHHHHHHHHhccCCceEEEecc
Q 016660          267 DGGADYCFECV-----GLA---SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       267 ~g~~d~vid~~-----g~~---~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .+++|+|+-..     +.+   ..++++.+.|+++ |+++..-.
T Consensus       144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG-G~l~i~e~  186 (253)
T d1tw3a2         144 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG-GRILIHER  186 (253)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             ccchhheeeccccccCCchhhHHHHHHHHHhcCCC-cEEEEEec
Confidence            23689887432     112   3377899999997 99887643

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=85.50  E-value=2.2  Score=36.46  Aligned_cols=99  Identities=13%  Similarity=0.111  Sum_probs=60.9

Q ss_pred             ccCCCCCEEEEEcC--CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH------cCCC--eEEeCCCCCchhHHHHhh
Q 016660          197 ANVEVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR------FGVT--EFVNSKNCGDKSIIIDMT  266 (385)
Q Consensus       197 ~~~~~~~~VlI~G~--g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~------lg~~--~vv~~~~~~~~~~i~~~~  266 (385)
                      ..+.+|++||=..+  |+.++.   . ...|++.|+.++.++..++++++      ++.+  .++.. +  ....+..+.
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl~---a-a~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~-d--~~~~l~~~~  212 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSVA---A-AMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM-D--VFDYFKYAR  212 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHHH---H-HHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEES-C--HHHHHHHHH
T ss_pred             HHhhCCCceeecCCCCcHHHHH---H-HhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEc-c--HHHHHHHHH
Confidence            35678999998844  665543   2 24688799999999988887763      2222  12322 2  222233322


Q ss_pred             -CC-CccEEE-Ecc--C-C-----------hHHHHHHHHHhccCCceEEEeccC
Q 016660          267 -DG-GADYCF-ECV--G-L-----------ASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       267 -~g-~~d~vi-d~~--g-~-----------~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                       .+ .||+|| |.-  + +           ...+..++++++++ |.++.+..+
T Consensus       213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg-G~l~~~scs  265 (317)
T d2b78a2         213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-GLIIASTNA  265 (317)
T ss_dssp             HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-EEEEEEECC
T ss_pred             hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCC
Confidence             33 799886 421  1 1           13466788999997 998887654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=85.28  E-value=3.5  Score=30.53  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHHH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFE  240 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~  240 (385)
                      .+|.|+|+|.+|..++..+...|. +.++.++..+++.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~   40 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVE   40 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccch
Confidence            468899999999998888887774 58999988776643

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.13  E-value=0.65  Score=36.68  Aligned_cols=39  Identities=18%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHH
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  244 (385)
                      +|.|+|.|-+|+..+.++ +.|+ .|+++|.++++.+.+++
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence            478889999999876655 5698 99999999999887764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.05  E-value=0.43  Score=38.19  Aligned_cols=30  Identities=23%  Similarity=0.269  Sum_probs=26.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      |+|+|+|+.|+.++..|...|. +|++++..
T Consensus         6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            7888999999999999999999 78888754

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=84.97  E-value=0.48  Score=40.06  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCEEEEEcCCch
Q 016660          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISE  237 (385)
Q Consensus       201 ~~~~VlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~~  237 (385)
                      +|.++||.|+ |  ++|.+.++.+...|+ +|+.+.++++
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~   45 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPA   45 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchh
Confidence            6889999997 4  799999999999999 8888876554

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.88  E-value=0.44  Score=38.62  Aligned_cols=31  Identities=29%  Similarity=0.298  Sum_probs=27.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      |+|+|+|+.|+.++..|...|. +|++++..+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~-~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            7888999999999999999999 888887644

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.87  E-value=0.42  Score=38.54  Aligned_cols=31  Identities=32%  Similarity=0.302  Sum_probs=26.9

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      |+|+|+|+.|+.++..|...|. +|++++..+
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~-kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGF-NTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            7889999999999988889999 788887543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=84.86  E-value=0.44  Score=40.35  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=26.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .|+|+|+|.+|++++..+...|.++|++++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            59999999999987777767887569999765

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=84.81  E-value=0.42  Score=40.60  Aligned_cols=31  Identities=32%  Similarity=0.486  Sum_probs=27.5

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      |||+|+|..|+.++..|...|+ +|++++..+
T Consensus        19 VlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~   49 (308)
T d1y0pa2          19 VVVVGSGGAGFSAAISATDSGA-KVILIEKEP   49 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            8999999999999999999999 799997643

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.70  E-value=7.6  Score=30.40  Aligned_cols=95  Identities=14%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchH----------HHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEE
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK----------FEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYC  273 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~----------~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~v  273 (385)
                      +|++.|.+.+|..+++.+...|. .|.++.+.+++          .+++++.+.. ++...+......+..+..-.+|++
T Consensus         2 kiv~~~~~~~g~~~l~~L~~~g~-~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~-~~~~~~~~~~~~~~~i~~~~~Dli   79 (203)
T d2blna2           2 KTVVFAYHDMGCLGIEALLAAGY-EISAIFTHTDNPGEKAFYGSVARLAAERGIP-VYAPDNVNHPLWVERIAQLSPDVI   79 (203)
T ss_dssp             EEEEEECHHHHHHHHHHHHHTTC-EEEEEECCCC------CCCCHHHHHHHHTCC-EECCSCCCSHHHHHHHHHTCCSEE
T ss_pred             eEEEEecCHHHHHHHHHHHHCCC-CEEEEEcCCCCCCcccccCHHHHHHHHcCCc-ceecccccchhhhhhhhhhcccce
Confidence            47788988899999999988898 66555433322          3456666765 333333233332222222378999


Q ss_pred             EEccCChHHHHHHHHHhccCCceEEEecc
Q 016660          274 FECVGLASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       274 id~~g~~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      |-+....-.-+..++..+.  |.+.+-..
T Consensus        80 i~~g~~~ii~~~il~~~~~--~~iN~H~s  106 (203)
T d2blna2          80 FSFYYRHLIYDEILQLAPA--GAFNLHGS  106 (203)
T ss_dssp             EEESCCSCCCHHHHTTCTT--CEEEEESS
T ss_pred             eeeecccchhcccchhhHH--HHHHHhhh
Confidence            9776554422334444333  55544433

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=84.63  E-value=0.24  Score=36.50  Aligned_cols=81  Identities=17%  Similarity=0.051  Sum_probs=48.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCChH
Q 016660          203 STVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLAS  281 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~-~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~~  281 (385)
                      .+|+|+|||..|.+.+...+ ..+++-+-.++.++++..  +.+.--.|+..++      +.++.....++++-++....
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G--~~I~Gi~V~~~~~------l~~~~~~~i~iai~~i~~~~   75 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG--RPVRGGVIEHVDL------LPQRVPGRIEIALLTVPREA   75 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTT--CEETTEEEEEGGG------HHHHSTTTCCEEEECSCHHH
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcC--CEECCEEEecHHH------HHHHHhhcccEEEEeCCHHH
Confidence            47999999999997765443 447744444554444321  1222234655443      34444446888888888766


Q ss_pred             HHHHHHHHhcc
Q 016660          282 LVQEAYACCRK  292 (385)
Q Consensus       282 ~~~~~~~~l~~  292 (385)
                       .++..+.+..
T Consensus        76 -~~~I~d~l~~   85 (126)
T d2dt5a2          76 -AQKAADLLVA   85 (126)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -HHHHHHHHHH
Confidence             5666665555

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=84.57  E-value=4.3  Score=31.11  Aligned_cols=96  Identities=17%  Similarity=0.176  Sum_probs=53.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC---CCEEEEEcCCc--hHHHHHHHc----C---CC-------e-EEe------CCCCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLCG---ATRIIGVDVIS--EKFEIGKRF----G---VT-------E-FVN------SKNCG  257 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G---~~~vi~~~~~~--~~~~~~~~l----g---~~-------~-vv~------~~~~~  257 (385)
                      +|.|.|-|-+|.++.+.+....   . .|+++-...  +....+-++    |   .+       . +++      ..+. 
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i-~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~-   79 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR-   79 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSE-EEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS-
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCE-EEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCC-
Confidence            5789999999999998766443   4 556653222  223332221    1   00       0 111      0010 


Q ss_pred             chhHHHHhhCCCccEEEEccCChHHHHHHHHHhccCCceEEEeccC
Q 016660          258 DKSIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       258 ~~~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      ....+ .+.+-++|+|+||+|.-...+.+...+..+ .+-|.++..
T Consensus        80 ~p~~i-~W~~~gvDiViEcTG~f~~~~~~~~hl~~G-akkViiSAP  123 (172)
T d1rm4a1          80 NPVNL-PWGDMGIDLVIEGTGVFVDRDGAGKHLQAG-AKKVLITAP  123 (172)
T ss_dssp             CGGGS-CHHHHTCCEEEECSSSCCBHHHHHHHHHTT-CSCEEESSC
T ss_pred             ChHHC-ChhhcCCCEEEecCceEccHHHHHHHHhcC-CceEEeecc
Confidence            00111 111127999999999866577788888886 666666553

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.51  E-value=0.36  Score=37.40  Aligned_cols=131  Identities=17%  Similarity=0.156  Sum_probs=67.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccCChH
Q 016660          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVGLAS  281 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g~~~  281 (385)
                      +|.|+|.|.+|...+..++.. +...+.+++..+++     +.....-....+      +.++... .+|+|+-+++...
T Consensus         9 kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~------~~e~l~~~~iD~V~I~tp~~~   77 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR-----ELGSLDEVRQIS------LEDALRSQEIDVAYICSESSS   77 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS-----CCCEETTEEBCC------HHHHHHCSSEEEEEECSCGGG
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH-----HHHHhhccCcCC------HHHHHhCCCcchhhhcccccc
Confidence            589999999998876666533 22123333221211     111110111111      2333333 7999999998887


Q ss_pred             HHHHHHHHhccCCceEEEeccCCCCCccc-ccHHHHhh-cCcEEEEeeecCCCCCCcHHHHHHHHHcCCC
Q 016660          282 LVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVLH-SGKILMGSLFGGLKAKSDIPILLKRYMDKEL  349 (385)
Q Consensus       282 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~  349 (385)
                      ..+.+..++..  |.-|++-......... .....+.. ++..+.-.  ..+.+...+..+-+++.+|.+
T Consensus        78 H~~~~~~al~~--gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~--~~~r~~p~~~~~k~~i~~~~l  143 (172)
T d1lc0a1          78 HEDYIRQFLQA--GKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEE--HVELLKNIFLKDQDIFVQKLL  143 (172)
T ss_dssp             HHHHHHHHHHT--TCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEE--CGGGGTTHHHHHHHHHHHHHT
T ss_pred             ccccccccccc--chhhhcCCCccccHHHHHHHHHHHHHcCCeEEEe--cHHHhhHHHHHHHHHHHcCCC
Confidence            78888888888  4556665422111111 11112222 33333222  123334567777777777633

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.45  E-value=0.43  Score=38.39  Aligned_cols=31  Identities=29%  Similarity=0.254  Sum_probs=27.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      .|+|+|+|+.|+.++..|..+|. +|++++..
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            37889999999999999999999 89998754

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=84.21  E-value=0.17  Score=39.19  Aligned_cols=91  Identities=21%  Similarity=0.265  Sum_probs=50.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHHHcC----C--CeEEeCCCCCchhHHHHhhCCCccEEEE
Q 016660          204 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFG----V--TEFVNSKNCGDKSIIIDMTDGGADYCFE  275 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg----~--~~vv~~~~~~~~~~i~~~~~g~~d~vid  275 (385)
                      +|.|+|+ |-+|++.++++... ++ .+++.-..+.....-+.+|    .  ..+....+  .     ......+|++||
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~-~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~--~-----~~~~~~~DViID   77 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKTGVTVQSS--L-----DAVKDDFDVFID   77 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESC--S-----TTTTTSCSEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecccchhccchhhhhhccccCCceeecc--H-----HHHhcccceEEE
Confidence            5788897 99999999988755 66 4444322221111111111    0  00000011  0     111125899999


Q ss_pred             ccCChHHHHHHHHHhccCCceEEEeccCC
Q 016660          276 CVGLASLVQEAYACCRKGWGKTIVLGVDQ  304 (385)
Q Consensus       276 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  304 (385)
                      ++.... ..+.++...+. +.=+.+|.++
T Consensus        78 Fs~p~~-~~~~~~~a~~~-~~~~ViGTTG  104 (162)
T d1diha1          78 FTRPEG-TLNHLAFCRQH-GKGMVIGTTG  104 (162)
T ss_dssp             CSCHHH-HHHHHHHHHHT-TCEEEECCCC
T ss_pred             eccHHH-HHHHHHHHHhc-cceeEEecCC
Confidence            977555 55666666664 7878888765

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.07  E-value=3.3  Score=31.30  Aligned_cols=38  Identities=26%  Similarity=0.452  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCchHH
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKF  239 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~  239 (385)
                      ..+|.|+|+|.+|...+..+...|. +.++.++.++++.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a   57 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKL   57 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhh
Confidence            3579999999999999888887774 5799998877654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=84.06  E-value=0.68  Score=36.70  Aligned_cols=89  Identities=24%  Similarity=0.228  Sum_probs=57.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccC
Q 016660          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVG  278 (385)
Q Consensus       199 ~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g  278 (385)
                      +.++.+||=+|+|. |..+..+     . ++++++.+++.++.+++-+...+. .+....     .+.++.||+|+..-.
T Consensus        34 ~~~~~~vLDiGcG~-G~~~~~~-----~-~~~giD~s~~~~~~a~~~~~~~~~-~d~~~l-----~~~~~~fD~I~~~~~  100 (208)
T d1vlma_          34 LLPEGRGVEIGVGT-GRFAVPL-----K-IKIGVEPSERMAEIARKRGVFVLK-GTAENL-----PLKDESFDFALMVTT  100 (208)
T ss_dssp             HCCSSCEEEETCTT-STTHHHH-----T-CCEEEESCHHHHHHHHHTTCEEEE-CBTTBC-----CSCTTCEEEEEEESC
T ss_pred             hCCCCeEEEECCCC-ccccccc-----c-eEEEEeCChhhccccccccccccc-cccccc-----ccccccccccccccc
Confidence            45677899999753 4444443     2 578999999999999887654332 211111     112237999986432


Q ss_pred             -----Ch-HHHHHHHHHhccCCceEEEec
Q 016660          279 -----LA-SLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       279 -----~~-~~~~~~~~~l~~~~G~~v~~g  301 (385)
                           .. ..++++.+.|+++ |.++...
T Consensus       101 l~h~~d~~~~l~~~~~~L~pg-G~l~i~~  128 (208)
T d1vlma_         101 ICFVDDPERALKEAYRILKKG-GYLIVGI  128 (208)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cccccccccchhhhhhcCCCC-ceEEEEe
Confidence                 22 3478899999997 9887764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=84.02  E-value=3.4  Score=30.73  Aligned_cols=37  Identities=35%  Similarity=0.486  Sum_probs=29.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCchHH
Q 016660          203 STVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKF  239 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~  239 (385)
                      .+|.|+|+|.+|...+..+...| +.+++.++.++++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            46889999999988888777666 45899999887764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.91  E-value=0.48  Score=37.29  Aligned_cols=32  Identities=16%  Similarity=0.100  Sum_probs=27.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~  234 (385)
                      ...|+|+|+|+.|+.++..|...|. ++++++.
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~   36 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAEL-KPLLFEG   36 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CCEEECC
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCC-cEEEEEe
Confidence            3569999999999999988889999 6777763

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=83.80  E-value=0.51  Score=39.37  Aligned_cols=30  Identities=30%  Similarity=0.503  Sum_probs=26.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      |+|+|+|.+|+.++..+...|. +|++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            8999999999998888888999 89999764

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.53  E-value=1.5  Score=36.57  Aligned_cols=103  Identities=10%  Similarity=0.010  Sum_probs=58.0

Q ss_pred             cCCCCCEEEEEcCCHHHHHHHHHHHHc-----CCC-EEEEEcCCchHHHHHHHc-C----CC-eEEeCCCCCchhH---H
Q 016660          198 NVEVGSTVVIFGLGSIGLAVAEGARLC-----GAT-RIIGVDVISEKFEIGKRF-G----VT-EFVNSKNCGDKSI---I  262 (385)
Q Consensus       198 ~~~~~~~VlI~G~g~vG~~ai~la~~~-----G~~-~vi~~~~~~~~~~~~~~l-g----~~-~vv~~~~~~~~~~---i  262 (385)
                      ..+++-+||=+|+|. |..+..+++.+     +.. .+++++.++..++.+++. .    .. ..++.........   .
T Consensus        37 ~~~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (280)
T d1jqea_          37 DTKSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRM  115 (280)
T ss_dssp             TTCSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHH
T ss_pred             cCCCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchh
Confidence            344555799888754 44444444321     221 578999888887777652 1    11 1223333222211   1


Q ss_pred             HHhh-CCCccEEEEccC-----C-hHHHHHHHHHhccCCceEEEecc
Q 016660          263 IDMT-DGGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       263 ~~~~-~g~~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .... .+.||+|+-.-.     . ..+++.+.++|+++ |.++....
T Consensus       116 ~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg-G~l~i~~~  161 (280)
T d1jqea_         116 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN-AKMLIIVV  161 (280)
T ss_dssp             TTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             cccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCC-CEEEEEEe
Confidence            1112 237999986332     2 35688999999997 98877644

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.49  E-value=0.56  Score=35.24  Aligned_cols=91  Identities=14%  Similarity=0.063  Sum_probs=51.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcC--CCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCCh
Q 016660          204 TVVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGLA  280 (385)
Q Consensus       204 ~VlI~G~-g~vG~~ai~la~~~G--~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~~  280 (385)
                      +|.|+|+ |-+|+-.++++..++  .-++..+.++...-+... +...... ..+      .....-.+.|++|-+.+..
T Consensus         4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~-~~~~~~~-~~~------~~~~~~~~~d~vf~a~p~~   75 (144)
T d2hjsa1           4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-FAESSLR-VGD------VDSFDFSSVGLAFFAAAAE   75 (144)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-ETTEEEE-CEE------GGGCCGGGCSEEEECSCHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCccee-eccccch-hcc------chhhhhccceEEEecCCcc
Confidence            5899998 999999999996443  225555543322100000 1111110 000      1111111589999999988


Q ss_pred             HHHHHHHHHhccCCceEEEeccC
Q 016660          281 SLVQEAYACCRKGWGKTIVLGVD  303 (385)
Q Consensus       281 ~~~~~~~~~l~~~~G~~v~~g~~  303 (385)
                      .+.+..-....++ .+++..+..
T Consensus        76 ~s~~~~~~~~~~g-~~VID~Ss~   97 (144)
T d2hjsa1          76 VSRAHAERARAAG-CSVIDLSGA   97 (144)
T ss_dssp             HHHHHHHHHHHTT-CEEEETTCT
T ss_pred             hhhhhccccccCC-ceEEeechh
Confidence            8666677777775 777776643

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.47  E-value=0.85  Score=35.88  Aligned_cols=86  Identities=16%  Similarity=0.108  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCCCccEEEEccCC-
Q 016660          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDGGADYCFECVGL-  279 (385)
Q Consensus       201 ~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g~~d~vid~~g~-  279 (385)
                      .+.+|.|+|.|.+|...+++++.+|. +|++.++.....       ........+  ..+ +.+    ..|+|+-+.+- 
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-------~~~~~~~~~--l~e-ll~----~sDii~i~~plt  107 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENKLP-------LGNATQVQH--LSD-LLN----MSDVVSLHVPEN  107 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCC-------CTTCEECSC--HHH-HHH----HCSEEEECCCSS
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccccch-------hhhhhhhhh--HHH-HHh----hccceeecccCC
Confidence            57899999999999999999999999 899997643311       111111111  111 212    25777665542 


Q ss_pred             hHH----HHHHHHHhccCCceEEEecc
Q 016660          280 ASL----VQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       280 ~~~----~~~~~~~l~~~~G~~v~~g~  302 (385)
                      +.+    =++.++.++++ ..+|.++-
T Consensus       108 ~~T~~li~~~~l~~mk~~-a~lIN~aR  133 (188)
T d1sc6a1         108 PSTKNMMGAKEISLMKPG-SLLINASR  133 (188)
T ss_dssp             TTTTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred             cchhhhccHHHHhhCCCC-CEEEEcCc
Confidence            211    14667777775 67776653

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=83.28  E-value=0.63  Score=40.09  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=27.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCCch
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISE  237 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~  237 (385)
                      .+|+|+|||..|++++..++..|. .+|++.++.++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            579999999999988866655442 28999987653

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=83.26  E-value=1.1  Score=37.37  Aligned_cols=72  Identities=18%  Similarity=0.204  Sum_probs=40.8

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC--CchHHHHHHHcCCCeEEeCCCCCchhHHHHhhCC-CccEEEEccC
Q 016660          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSKNCGDKSIIIDMTDG-GADYCFECVG  278 (385)
Q Consensus       205 VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~lg~~~vv~~~~~~~~~~i~~~~~g-~~d~vid~~g  278 (385)
                      |||+|+ |-+|...+..+...|+..|++++.  ...+.....++......+..+  ....+.....- ..++++.+.+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~aa   77 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKED--FLIQIMAGEEFGDVEAIFHEGA   77 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEHHH--HHHHHHTTCCCSSCCEEEECCS
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccchhhhccchH--HHHHHhhhhcccchhhhhhhcc
Confidence            799987 999999988888889757888752  222333344444333333222  11111111122 5677776653

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.85  E-value=0.55  Score=37.56  Aligned_cols=30  Identities=20%  Similarity=0.302  Sum_probs=26.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      |+|+|+|+.|+.++..|...|. +|.+++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            7888999999999999999999 78888753

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.73  E-value=0.62  Score=37.24  Aligned_cols=30  Identities=40%  Similarity=0.382  Sum_probs=26.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      |+|+|+|+.|+.++..|...|. +|.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGA-RAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            7888999999999999999999 78888653

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=82.61  E-value=0.52  Score=40.37  Aligned_cols=32  Identities=34%  Similarity=0.538  Sum_probs=27.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      --|||+|+|..|+.++..|...|+ +|++++..
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~   51 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGA-NVILVDKA   51 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            348999999999999999998999 79999754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=82.51  E-value=0.47  Score=39.67  Aligned_cols=75  Identities=20%  Similarity=0.252  Sum_probs=46.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCchH------HHHHHH---cCCCeEEeCCCCCchhHHHHhhCCCcc
Q 016660          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK------FEIGKR---FGVTEFVNSKNCGDKSIIIDMTDGGAD  271 (385)
Q Consensus       202 ~~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~------~~~~~~---lg~~~vv~~~~~~~~~~i~~~~~g~~d  271 (385)
                      -.+|||+|+ |.+|...+..+...|. .|++++++...      ......   .+++ ++..+- ........... +.+
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~-~~~~~~~~~~~-~~~   78 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTASSNSEKAQLLESFKASGAN-IVHGSI-DDHASLVEAVK-NVD   78 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTTTTHHHHHHHHHHHTTTCE-EECCCT-TCHHHHHHHHH-TCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCccccchhHHHHHHhhccCCcE-EEEeec-ccchhhhhhhh-hce
Confidence            357999998 9999999999999999 78888776432      222222   2333 332222 22222233222 578


Q ss_pred             EEEEccCCh
Q 016660          272 YCFECVGLA  280 (385)
Q Consensus       272 ~vid~~g~~  280 (385)
                      .++++.+..
T Consensus        79 ~vi~~~~~~   87 (307)
T d1qyca_          79 VVISTVGSL   87 (307)
T ss_dssp             EEEECCCGG
T ss_pred             eeeeccccc
Confidence            888877643

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=82.46  E-value=0.91  Score=38.42  Aligned_cols=31  Identities=23%  Similarity=0.270  Sum_probs=26.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 016660          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (385)
Q Consensus       203 ~~VlI~G~-g~vG~~ai~la~~~G~~~vi~~~~  234 (385)
                      .+|||+|+ |-+|...+..+...|. .+++++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~   34 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRT   34 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT-EEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecC
Confidence            47999997 9999999999998998 6776643

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.35  E-value=4.1  Score=34.59  Aligned_cols=56  Identities=27%  Similarity=0.293  Sum_probs=39.3

Q ss_pred             hhccCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCEEEEEc--CCchHHHHHHHcCCCeE
Q 016660          195 RTANVEVGSTVVIF-GLGSIGLAVAEGARLCGATRIIGVD--VISEKFEIGKRFGVTEF  250 (385)
Q Consensus       195 ~~~~~~~~~~VlI~-G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~lg~~~v  250 (385)
                      +...++.+...+|. .+|..|++.+..++.+|++-++++.  .++.|++.++.+|++-+
T Consensus        57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi  115 (320)
T d1z7wa1          57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELV  115 (320)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred             HcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceE
Confidence            34445555555555 5699999999999999996444443  24567888888998644

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.31  E-value=6.9  Score=32.52  Aligned_cols=98  Identities=18%  Similarity=0.182  Sum_probs=61.2

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--CchHHHHHHHcCCCeEEe--------------------
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVN--------------------  252 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~lg~~~vv~--------------------  252 (385)
                      +....+++.+|+..++|.-|.+++..++.+|.+-++++..  ++.+...++.+|+.-+..                    
T Consensus        54 ~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~~~~~~~~~~~~~~~~~~  133 (302)
T d1fcja_          54 KRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASD  133 (302)
T ss_dssp             HHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHTS
T ss_pred             HcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccccccchhhhHHHHHHhhh
Confidence            3445667776666677999999999999999865555533  345666777777653321                    


Q ss_pred             ------CCCCCch-----------hHHHHhhCCCccEEEEccCChHHHHHHHHHhcc
Q 016660          253 ------SKNCGDK-----------SIIIDMTDGGADYCFECVGLASLVQEAYACCRK  292 (385)
Q Consensus       253 ------~~~~~~~-----------~~i~~~~~g~~d~vid~~g~~~~~~~~~~~l~~  292 (385)
                            .......           ..+.+..++.+|++|-++|+..++.-....++.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~  190 (302)
T d1fcja_         134 PQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKG  190 (302)
T ss_dssp             TTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHT
T ss_pred             ccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccccccceeeeee
Confidence                  1111111           113344444689999999987666655555543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.89  E-value=0.74  Score=37.10  Aligned_cols=34  Identities=15%  Similarity=0.119  Sum_probs=27.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHH--cCCCEEEEEcCCch
Q 016660          203 STVVIFGLGSIGLAVAEGARL--CGATRIIGVDVISE  237 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~--~G~~~vi~~~~~~~  237 (385)
                      .+|+|+|+|+.|+.+++.+..  .|+ .|++.+..+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCC
Confidence            479999999999999886654  477 8998987653

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.79  E-value=5.3  Score=33.78  Aligned_cols=100  Identities=18%  Similarity=0.228  Sum_probs=60.5

Q ss_pred             hccCCCCCEEEEEcC--CHHHHHHHHHHHHcC-CCEEEEEcCCchHHHHH----HHcCCCeEEeCCCCCchhHHHHhhCC
Q 016660          196 TANVEVGSTVVIFGL--GSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSIIIDMTDG  268 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~--g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~----~~lg~~~vv~~~~~~~~~~i~~~~~g  268 (385)
                      ...+++|++||=.-|  |+-   +.+++..++ -..+++.+.+++|...+    +.+|...++........   .....+
T Consensus       111 ~l~~~~g~~vlD~CAapGgK---t~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~---~~~~~~  184 (313)
T d1ixka_         111 ALDPKPGEIVADMAAAPGGK---TSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH---IGELNV  184 (313)
T ss_dssp             HHCCCTTCEEEECCSSCSHH---HHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGG---GGGGCC
T ss_pred             cccCCccceeeecccchhhh---hHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccc---cccccc
Confidence            346789998877633  443   334444333 22799999999988755    45787665544331111   122334


Q ss_pred             CccEE-EE--ccCCh-------------------------HHHHHHHHHhccCCceEEEecc
Q 016660          269 GADYC-FE--CVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       269 ~~d~v-id--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .||.| +|  |+|..                         ..+..++++++++ |++|+.--
T Consensus       185 ~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~g-G~lVYsTC  245 (313)
T d1ixka_         185 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG-GILVYSTC  245 (313)
T ss_dssp             CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             cccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCC-cEEEEeec
Confidence            68877 45  55541                         3356788899997 88776543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=81.61  E-value=0.61  Score=39.93  Aligned_cols=31  Identities=45%  Similarity=0.592  Sum_probs=27.5

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      |+|+|+|..|+.++..|...|+ +|++++..+
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~-~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGA-KVILLEKEP   56 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8999999999999988888999 799997643

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.54  E-value=1  Score=36.19  Aligned_cols=99  Identities=23%  Similarity=0.251  Sum_probs=56.6

Q ss_pred             ccCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCCchHHHHHH----HcCCCeEEeCCCCCchhHHHHh---hC
Q 016660          197 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSIIIDM---TD  267 (385)
Q Consensus       197 ~~~~~~~~VlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~----~lg~~~vv~~~~~~~~~~i~~~---~~  267 (385)
                      .+..+..+||=+|++. |..++.+|+++  +. +|+.++.+++..+.++    ..|...-+.....+....+.++   ..
T Consensus        52 v~~~kpk~ILEiGt~~-G~Sti~la~al~~~g-~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~  129 (214)
T d2cl5a1          52 IREYSPSLVLELGAYC-GYSAVRMARLLQPGA-RLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD  129 (214)
T ss_dssp             HHHHCCSEEEEECCTT-SHHHHHHHTTCCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSC
T ss_pred             HHhhCCCEEEEEccCc-hhHHHHHHHhCCCcc-EEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccc
Confidence            3445567899998743 56677788765  44 8999999988777664    4565321222221222222222   22


Q ss_pred             -CCccEEE-EccCChH----HHHHHHHHhccCCceEE
Q 016660          268 -GGADYCF-ECVGLAS----LVQEAYACCRKGWGKTI  298 (385)
Q Consensus       268 -g~~d~vi-d~~g~~~----~~~~~~~~l~~~~G~~v  298 (385)
                       +.+|+|| |..-...    .+.++++++++| |.++
T Consensus       130 ~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpG-GvIv  165 (214)
T d2cl5a1         130 VDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKG-TVLL  165 (214)
T ss_dssp             CCCEEEEEECSCGGGHHHHHHHHHHTTCEEEE-EEEE
T ss_pred             ccccceeeecccccccccHHHHHHHhCccCCC-cEEE
Confidence             2689886 4332221    134556678996 7544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.31  E-value=2.3  Score=31.80  Aligned_cols=70  Identities=19%  Similarity=0.128  Sum_probs=41.2

Q ss_pred             CCCCEEEEEcC--CHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHH----HcCCCe-EEeCCCCCchhHHHHhhCCCccE
Q 016660          200 EVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-FVNSKNCGDKSIIIDMTDGGADY  272 (385)
Q Consensus       200 ~~~~~VlI~G~--g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~-vv~~~~~~~~~~i~~~~~g~~d~  272 (385)
                      -+|.+||=.|+  |.+|+.+    ..+|+++|+.++.+++-.+.++    .++... +--... +... ......+.||+
T Consensus        13 ~~g~~vlDl~~GtG~~~iea----~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~-D~~~-~l~~~~~~fDi   86 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEA----VSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKM-EAER-AIDCLTGRFDL   86 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHH----HHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECS-CHHH-HHHHBCSCEEE
T ss_pred             CCCCeEEEcCCccCHHHHHH----HHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcc-cccc-cccccccccce
Confidence            35778877754  6666532    3478889999999888766554    356532 211111 1222 22334458999


Q ss_pred             EEE
Q 016660          273 CFE  275 (385)
Q Consensus       273 vid  275 (385)
                      ||-
T Consensus        87 If~   89 (152)
T d2esra1          87 VFL   89 (152)
T ss_dssp             EEE
T ss_pred             eEe
Confidence            963

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=81.13  E-value=1.5  Score=35.29  Aligned_cols=40  Identities=23%  Similarity=0.275  Sum_probs=34.1

Q ss_pred             hccCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 016660          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (385)
Q Consensus       196 ~~~~~~~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  235 (385)
                      ...--.+.+|+++|+|..|...++++...+.++++.+|+.
T Consensus        20 ~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          20 TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            3344578999999999999999999998999999999865

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=81.00  E-value=0.65  Score=39.84  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=27.3

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCc
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  236 (385)
                      |||+|+|..|+.++.-|...|+ +|++++..+
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGL-STIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            8999999999999999999999 799887543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.00  E-value=0.53  Score=38.03  Aligned_cols=33  Identities=12%  Similarity=0.160  Sum_probs=27.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcC-------CCEEEEEcCCc
Q 016660          203 STVVIFGLGSIGLAVAEGARLCG-------ATRIIGVDVIS  236 (385)
Q Consensus       203 ~~VlI~G~g~vG~~ai~la~~~G-------~~~vi~~~~~~  236 (385)
                      -+|+|+|+|+.|+.++..+...|       + .|.+.+..+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~-~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCC-ceEEEecCC
Confidence            37999999999999998887766       4 688887655

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.92  E-value=0.65  Score=37.57  Aligned_cols=29  Identities=34%  Similarity=0.489  Sum_probs=26.4

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 016660          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (385)
Q Consensus       205 VlI~G~g~vG~~ai~la~~~G~~~vi~~~~  234 (385)
                      |+|+|+|+.|+.++..|...|. +|.+++.
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~-kV~viE~   34 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDK-KVMVLDF   34 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCC-CEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            7899999999999999999999 7888874

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=80.85  E-value=6.1  Score=31.06  Aligned_cols=94  Identities=15%  Similarity=0.165  Sum_probs=62.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCchHHHHH----HHcCCCeE--EeCCCCCchhHHHHhhCC-CccEEE
Q 016660          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF--VNSKNCGDKSIIIDMTDG-GADYCF  274 (385)
Q Consensus       202 ~~~VlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v--v~~~~~~~~~~i~~~~~g-~~d~vi  274 (385)
                      ...||=+|+|. |..++.+|+..--..+++++.++.....+    ++.+...+  +..+...    +....+. .+|.|+
T Consensus        32 ~plvLdIGcG~-G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~----l~~~~~~~~~~~i~  106 (204)
T d1yzha1          32 NPIHVEVGSGK-GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD----LTDYFEDGEIDRLY  106 (204)
T ss_dssp             CCEEEEESCTT-SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC----GGGTSCTTCCSEEE
T ss_pred             CCeEEEEeccC-CHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHH----HhhhccCCceehhc
Confidence            34566668876 88999999987433899999998876654    34565533  3332211    2233333 688886


Q ss_pred             EccCC--------------hHHHHHHHHHhccCCceEEEec
Q 016660          275 ECVGL--------------ASLVQEAYACCRKGWGKTIVLG  301 (385)
Q Consensus       275 d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g  301 (385)
                      -....              +..++.+.+.|+++ |.+.+..
T Consensus       107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lkpg-G~l~i~T  146 (204)
T d1yzha1         107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN-GEIHFKT  146 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             ccccccccchhhhhhhhhHHHHHHHHHHhCCCC-cEEEEEE
Confidence            65553              35588899999997 9987653

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.49  E-value=1  Score=36.84  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=28.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHH-HHcCCCEEEEEc
Q 016660          200 EVGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVD  233 (385)
Q Consensus       200 ~~~~~VlI~G~g~vG~~ai~la-~~~G~~~vi~~~  233 (385)
                      -++.+|+|.|.|.+|..+++++ +..|+ +|++++
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vs   62 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVS   62 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEee
Confidence            4689999999999999999887 56799 777775

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=80.30  E-value=5.6  Score=32.44  Aligned_cols=98  Identities=17%  Similarity=0.123  Sum_probs=60.5

Q ss_pred             hhccCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCchHHHHHH----HcCC-CeE-EeCCCCCchhHHHHhhC
Q 016660          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGK----RFGV-TEF-VNSKNCGDKSIIIDMTD  267 (385)
Q Consensus       195 ~~~~~~~~~~VlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~----~lg~-~~v-v~~~~~~~~~~i~~~~~  267 (385)
                      ....+....+||=+|+|. |..+..+++.. +. ++++++. ++-.+.++    +.|. +++ +...+  .    ....+
T Consensus        75 ~~~d~~~~~~vlDvG~G~-G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d--~----~~~~p  145 (256)
T d1qzza2          75 DAYDWSAVRHVLDVGGGN-GGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGLADRVTVAEGD--F----FKPLP  145 (256)
T ss_dssp             HTSCCTTCCEEEEETCTT-SHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC--T----TSCCS
T ss_pred             hcCCCccCCEEEEECCCC-CHHHHHHHHhhcCc-EEEEecC-hHHHHHHHHHHhhcCCcceeeeeeee--c----ccccc
Confidence            344567778898888765 78888999876 66 8999985 55444433    3343 222 11222  1    11122


Q ss_pred             CCccEEEEcc-----CCh---HHHHHHHHHhccCCceEEEecc
Q 016660          268 GGADYCFECV-----GLA---SLVQEAYACCRKGWGKTIVLGV  302 (385)
Q Consensus       268 g~~d~vid~~-----g~~---~~~~~~~~~l~~~~G~~v~~g~  302 (385)
                      .++|+++-.-     +.+   ..++++.+.|+++ |+++.+..
T Consensus       146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkpg-G~llI~d~  187 (256)
T d1qzza2         146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPG-GRLLVLDR  187 (256)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             ccchhhhccccccccCcHHHHHHHHHHHhhcCCc-ceeEEEEe
Confidence            3688887321     112   3367899999997 99988754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.03  E-value=0.78  Score=40.50  Aligned_cols=32  Identities=31%  Similarity=0.403  Sum_probs=24.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHH------cCCCEEEEEcCCc
Q 016660          204 TVVIFGLGSIGLAVAEGARL------CGATRIIGVDVIS  236 (385)
Q Consensus       204 ~VlI~G~g~vG~~ai~la~~------~G~~~vi~~~~~~  236 (385)
                      -|+|+|+|+.|+.++..+..      .|+ +|+++++..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCC
Confidence            48999999999886654443      688 899998653