Citrus Sinensis ID: 016665

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLPSSPVASQPAQAANALPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEPSVPISSSTSNTSSVSLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL
cccccccccccccccccccccccEEEEccccccccccccEEEEEEccccccccHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccHcccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHHHHHccccccccHHHcccccHHHHHHHHHHHHHcccccccccHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mtprkmcfdcnaknptwasVTYGIFLCIDCSAVHRSLGVHISfvrstnldswSAEQLKMMVYGGNNRAQVFFkqhgwtdggkiEAKYTSRAAELYKQILAKEVAKNMaeeaglpsspvasqpaqaanalpdvkiqdapkenyqgrqetqdapgspkvsrtvltstvkkplgakksgktgglgarkltskpseslyeqkpeepsvpissstsntssvslpfasrfeyvdnvqsselssggpqvlshvappksssffadygmdngfqkksgsskVQIQETDEARKKFSnaksisssqffgdqnnsidmdtQVSLQkfsgsasissadlfghdsdnasLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL
MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLPSSPVASQPAQAANALPDVKIQDAPKENYQgrqetqdapgspkvsrtvltstvkkplgakksgktgglgarkltskpseslyeqkpeepsvpissstsnTSSVSLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAgetgkklsslasslitdiqdril
MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLpsspvasqpaqaanaLPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEpsvpissstsntssvsLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL
*****MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAK**************************************************************************************************************************************************************************************************************************************************I*****************************************
MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEV**************************************************************************************************************************************************************************************************************************************************************************SSLASSLITDIQDRIL
MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNM*******************NALPDVKIQDAPK*********************VLTSTVKKPLGAKKSGKTGGLGARKLTSK***************************SLPFASRFEYVDN************VLSHVAPPKSSSFFADYGMDNGF**************************ISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL
*TPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTD***I***YTSRAAELYKQILAKEVAKNMAEEA*******************************************************************************************************************************************************************************************D*N***DMD**********************DSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLPSSPVASQPAQAANALPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEPSVPISSSTSNTSSVSLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query385 2.2.26 [Sep-21-2011]
Q8H100413 Probable ADP-ribosylation yes no 0.981 0.915 0.670 1e-146
Q9FIQ0402 Probable ADP-ribosylation no no 0.968 0.927 0.649 1e-138
O82171395 ADP-ribosylation factor G no no 0.945 0.921 0.675 1e-131
Q09531 529 Uncharacterized protein F yes no 0.257 0.187 0.584 4e-32
Q9D8S3523 ADP-ribosylation factor G yes no 0.464 0.342 0.414 5e-32
A1L520 520 ADP-ribosylation factor G yes no 0.238 0.176 0.638 9e-32
Q17R07 517 ADP-ribosylation factor G no no 0.244 0.181 0.635 1e-31
Q4R4C9516 ADP-ribosylation factor G N/A no 0.470 0.350 0.412 2e-31
Q8N6H7 521 ADP-ribosylation factor G no no 0.238 0.176 0.627 2e-31
Q9NP61516 ADP-ribosylation factor G no no 0.470 0.350 0.412 2e-31
>sp|Q8H100|AGD8_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1 Back     alignment and function desciption
 Score =  517 bits (1331), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/391 (67%), Positives = 318/391 (81%), Gaps = 13/391 (3%)

Query: 5   KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGG 64
           K+CFDC+AKNPTWASVTYGIFLCIDCSA HR+LGVHISFVRSTNLDSWS EQL+ M++GG
Sbjct: 26  KVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGG 85

Query: 65  NNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEE--AGLPSSPVA-SQ 121
           NNRAQVFFKQHGWTDGGKIEAKYTSRAA+LY+QILAKEVAK +AEE  +GL SSPVA SQ
Sbjct: 86  NNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQ 145

Query: 122 PAQAANALPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGL 181
             + +N +    +++   E    + E   A  SPK S TV+ ST KKP+GAK++GKTGGL
Sbjct: 146 LPEVSNGVSSYSVKE---ELPLSKHEATSATSSPKASNTVVPSTFKKPIGAKRTGKTGGL 202

Query: 182 GARKLTSKPSESLYEQKPEE--PSVPISSSTSN---TSSVSLPFASRFEYVDNVQSSELS 236
           GARKLT+KP ++LYEQKPEE  P +P  SST+N    SS    FASRFEY D++QS   S
Sbjct: 203 GARKLTTKPKDNLYEQKPEEVAPVIPAVSSTNNGESKSSAGSSFASRFEYNDDLQSGGQS 262

Query: 237 SGGPQVLSHVAPPKSSSFFADYGMD--NGFQKKSGSSKVQIQETDEARKKFSNAKSISSS 294
            GG QVL+HVAPPKSSSFF+D+GMD     +  S SSK Q++E+DEARKKF+NAKSISS+
Sbjct: 263 VGGTQVLNHVAPPKSSSFFSDFGMDSSFPKKSSSNSSKSQVEESDEARKKFTNAKSISSA 322

Query: 295 QFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQD 354
           Q+FGDQN + D++++ +LQKF+GSASISSAD +GHD D++++D+ ASDLINRLSFQAQQD
Sbjct: 323 QYFGDQNKNADLESKATLQKFAGSASISSADFYGHDQDDSNIDITASDLINRLSFQAQQD 382

Query: 355 ISSLKNIAGETGKKLSSLASSLITDIQDRIL 385
           +SSL NIAGET KKL +LAS + +DIQDR+L
Sbjct: 383 LSSLVNIAGETKKKLGTLASGIFSDIQDRML 413
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FIQ0|AGD9_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1 Back     alignment and function description
>sp|O82171|AGD10_ARATH ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1 Back     alignment and function description
>sp|Q09531|YQP4_CAEEL Uncharacterized protein F07F6.4 OS=Caenorhabditis elegans GN=F07F6.4 PE=4 SV=2 Back     alignment and function description
>sp|Q9D8S3|ARFG3_MOUSE ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus GN=Arfgap3 PE=2 SV=2 Back     alignment and function description
>sp|A1L520|ARFG2_BOVIN ADP-ribosylation factor GTPase-activating protein 2 OS=Bos taurus GN=ARFGAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q17R07|ARFG3_BOVIN ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description
>sp|Q4R4C9|ARFG3_MACFA ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description
>sp|Q8N6H7|ARFG2_HUMAN ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens GN=ARFGAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9NP61|ARFG3_HUMAN ADP-ribosylation factor GTPase-activating protein 3 OS=Homo sapiens GN=ARFGAP3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
255573503404 arf gtpase-activating protein, putative 0.987 0.940 0.804 0.0
359474555405 PREDICTED: probable ADP-ribosylation fac 0.989 0.940 0.791 1e-180
224138128406 predicted protein [Populus trichocarpa] 0.984 0.933 0.782 1e-173
224126465404 predicted protein [Populus trichocarpa] 0.984 0.938 0.786 1e-172
356526713403 PREDICTED: probable ADP-ribosylation fac 0.984 0.940 0.765 1e-169
356495867403 PREDICTED: probable ADP-ribosylation fac 0.984 0.940 0.757 1e-167
449462021405 PREDICTED: probable ADP-ribosylation fac 0.987 0.938 0.747 1e-157
115483614407 Os10g0574800 [Oryza sativa Japonica Grou 0.968 0.916 0.676 1e-145
357517049409 ADP-ribosylation factor GTPase-activatin 0.979 0.921 0.705 1e-144
18414983413 putative ADP-ribosylation factor GTPase- 0.981 0.915 0.670 1e-144
>gi|255573503|ref|XP_002527677.1| arf gtpase-activating protein, putative [Ricinus communis] gi|223532982|gb|EEF34748.1| arf gtpase-activating protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/383 (80%), Positives = 349/383 (91%), Gaps = 3/383 (0%)

Query: 5   KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGG 64
           KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS EQLK+M +GG
Sbjct: 23  KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKVMSFGG 82

Query: 65  NNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLPSSPVASQPAQ 124
           NNRAQ FFKQHGWTDGGKIEAKYTSRAA+LY+QIL+KEVAK+MAE+AGLPSSPVASQ AQ
Sbjct: 83  NNRAQAFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSMAEDAGLPSSPVASQSAQ 142

Query: 125 AANALPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGAR 184
           A+N  PDVK  ++P+E+  G+QET D P  PKVS  ++TSTVKKPLGAK++GKTGGLGAR
Sbjct: 143 ASNGFPDVKTNESPEESSLGKQETPDVPPPPKVSHPIITSTVKKPLGAKRTGKTGGLGAR 202

Query: 185 KLTSKPSESLYEQKPEEPSVPISSSTSNTSSVSLPFASRFEYVDNVQSSELSSGGPQVLS 244
           KLT+KPSESLY+QKPEEP +P+ ++T+NT      F SRFEYVDNVQS+EL SGGPQV+S
Sbjct: 203 KLTTKPSESLYDQKPEEPPLPVPAATNNTPKAGTSFTSRFEYVDNVQSTELISGGPQVIS 262

Query: 245 HVAPPKSSSFFADYGMDNGFQKKS--GSSKVQIQETDEARKKFSNAKSISSSQFFGDQNN 302
           HV+PPKSSSFFA++GMD+GFQKKS   SSKVQIQETDEARKKFSNAKSISS+QFFGDQN 
Sbjct: 263 HVSPPKSSSFFAEFGMDSGFQKKSSNNSSKVQIQETDEARKKFSNAKSISSAQFFGDQNK 322

Query: 303 SIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIA 362
           + D+D+QVSLQKFSGS++ISSADLFG  SD+ S+DLAASDLINR+SFQAQQDISSLKNIA
Sbjct: 323 ATDIDSQVSLQKFSGSSAISSADLFGDSSDH-SIDLAASDLINRISFQAQQDISSLKNIA 381

Query: 363 GETGKKLSSLASSLITDIQDRIL 385
           GETGKKLSSLAS+LITD+QDRIL
Sbjct: 382 GETGKKLSSLASTLITDLQDRIL 404

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474555|ref|XP_002278066.2| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Vitis vinifera] gi|297742095|emb|CBI33882.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224138128|ref|XP_002326525.1| predicted protein [Populus trichocarpa] gi|222833847|gb|EEE72324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224126465|ref|XP_002329561.1| predicted protein [Populus trichocarpa] gi|222870270|gb|EEF07401.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356526713|ref|XP_003531961.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Glycine max] Back     alignment and taxonomy information
>gi|356495867|ref|XP_003516792.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Glycine max] Back     alignment and taxonomy information
>gi|449462021|ref|XP_004148740.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Cucumis sativus] gi|449517898|ref|XP_004165981.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|115483614|ref|NP_001065477.1| Os10g0574800 [Oryza sativa Japonica Group] gi|12643061|gb|AAK00450.1|AC060755_20 unknown protein [Oryza sativa Japonica Group] gi|31433652|gb|AAP55136.1| GTPase activating protein, putative, expressed [Oryza sativa Japonica Group] gi|113640009|dbj|BAF27314.1| Os10g0574800 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357517049|ref|XP_003628813.1| ADP-ribosylation factor GTPase-activating protein AGD10 [Medicago truncatula] gi|355522835|gb|AET03289.1| ADP-ribosylation factor GTPase-activating protein AGD10 [Medicago truncatula] Back     alignment and taxonomy information
>gi|18414983|ref|NP_567543.1| putative ADP-ribosylation factor GTPase-activating protein AGD8 [Arabidopsis thaliana] gi|75244593|sp|Q8H100.1|AGD8_ARATH RecName: Full=Probable ADP-ribosylation factor GTPase-activating protein AGD8; Short=ARF GAP AGD8; AltName: Full=Protein ARF-GAP DOMAIN 8; Short=AtAGD8 gi|24030421|gb|AAN41368.1| unknown protein [Arabidopsis thaliana] gi|51970716|dbj|BAD44050.1| unknown protein [Arabidopsis thaliana] gi|51971433|dbj|BAD44381.1| unknown protein [Arabidopsis thaliana] gi|62319827|dbj|BAD93852.1| hypothetical protein [Arabidopsis thaliana] gi|62320091|dbj|BAD94263.1| hypothetical protein [Arabidopsis thaliana] gi|110739292|dbj|BAF01559.1| hypothetical protein [Arabidopsis thaliana] gi|332658561|gb|AEE83961.1| putative ADP-ribosylation factor GTPase-activating protein AGD8 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
TAIR|locus:2141060413 AGD8 "AT4G17890" [Arabidopsis 0.989 0.922 0.639 3.6e-128
TAIR|locus:2178545402 AGD9 "AT5G46750" [Arabidopsis 0.976 0.935 0.625 7.4e-121
TAIR|locus:2063429395 RPA "AT2G35210" [Arabidopsis t 0.948 0.924 0.656 2.9e-119
UNIPROTKB|E1C322 522 ARFGAP3 "Uncharacterized prote 0.275 0.203 0.587 9.1e-52
ZFIN|ZDB-GENE-040426-1498 arfgap3 "ADP-ribosylation fact 0.283 0.218 0.566 2.6e-51
UNIPROTKB|F1SIB9 520 ARFGAP2 "Uncharacterized prote 0.238 0.176 0.627 5.8e-50
UNIPROTKB|Q9NP61 516 ARFGAP3 "ADP-ribosylation fact 0.275 0.205 0.577 6.6e-50
ZFIN|ZDB-GENE-051120-177 536 arfgap2 "ADP-ribosylation fact 0.238 0.171 0.617 7.9e-50
UNIPROTKB|A1L520 520 ARFGAP2 "ADP-ribosylation fact 0.238 0.176 0.638 1.3e-49
UNIPROTKB|Q8N6H7 521 ARFGAP2 "ADP-ribosylation fact 0.238 0.176 0.627 3.3e-49
TAIR|locus:2141060 AGD8 "AT4G17890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
 Identities = 248/388 (63%), Positives = 296/388 (76%)

Query:     5 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGG 64
             K+CFDC+AKNPTWASVTYGIFLCIDCSA HR+LGVHISFVRSTNLDSWS EQL+ M++GG
Sbjct:    26 KVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGG 85

Query:    65 NNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLXXXXXXXXXXX 124
             NNRAQVFFKQHGWTDGGKIEAKYTSRAA+LY+QILAKEVAK +AEE              
Sbjct:    86 NNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQ 145

Query:   125 XXXXLPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGAR 184
                    V      +E    + E   A  SPK S TV+ ST KKP+GAK++GKTGGLGAR
Sbjct:   146 LPEVSNGVSSYSVKEELPLSKHEATSATSSPKASNTVVPSTFKKPIGAKRTGKTGGLGAR 205

Query:   185 KLTSKPSESLYEQKPEEXX-----XXXXXXXXXXXXXXLPFASRFEYVDNVQSSELSSGG 239
             KLT+KP ++LYEQKPEE                       FASRFEY D++QS   S GG
Sbjct:   206 KLTTKPKDNLYEQKPEEVAPVIPAVSSTNNGESKSSAGSSFASRFEYNDDLQSGGQSVGG 265

Query:   240 PQVLSHVAPPKSSSFFADYGMDNGFQKKSGS--SKVQIQETDEARKKFSNAKSISSSQFF 297
              QVL+HVAPPKSSSFF+D+GMD+ F KKS S  SK Q++E+DEARKKF+NAKSISS+Q+F
Sbjct:   266 TQVLNHVAPPKSSSFFSDFGMDSSFPKKSSSNSSKSQVEESDEARKKFTNAKSISSAQYF 325

Query:   298 GDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISS 357
             GDQN + D++++ +LQKF+GSASISSAD +GHD D++++D+ ASDLINRLSFQAQQD+SS
Sbjct:   326 GDQNKNADLESKATLQKFAGSASISSADFYGHDQDDSNIDITASDLINRLSFQAQQDLSS 385

Query:   358 LKNIAGETGKKLSSLASSLITDIQDRIL 385
             L NIAGET KKL +LAS + +DIQDR+L
Sbjct:   386 LVNIAGETKKKLGTLASGIFSDIQDRML 413
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2178545 AGD9 "AT5G46750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063429 RPA "AT2G35210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C322 ARFGAP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1 arfgap3 "ADP-ribosylation factor GTPase activating protein 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SIB9 ARFGAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NP61 ARFGAP3 "ADP-ribosylation factor GTPase-activating protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051120-177 arfgap2 "ADP-ribosylation factor GTPase activating protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A1L520 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N6H7 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H100AGD8_ARATHNo assigned EC number0.67000.98180.9152yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 1e-143
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 3e-44
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 7e-41
COG5347319 COG5347, COG5347, GTPase-activating protein that r 2e-36
PLN03119 648 PLN03119, PLN03119, putative ADP-ribosylation fact 6e-06
PLN03131 705 PLN03131, PLN03131, hypothetical protein; Provisio 5e-04
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information 
 Score =  412 bits (1059), Expect = e-143
 Identities = 256/379 (67%), Positives = 299/379 (78%), Gaps = 15/379 (3%)

Query: 5   KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGG 64
           K+CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS+EQLKMM+YGG
Sbjct: 23  KICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGG 82

Query: 65  NNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEA-GLPSSPVASQPA 123
           NNRAQVFFKQ+GW+DGGK EAKYTSRAA+LYKQILAKEVAK+ AEE   LP SP  S   
Sbjct: 83  NNRAQVFFKQYGWSDGGKTEAKYTSRAADLYKQILAKEVAKSKAEEELDLPPSPPDS--T 140

Query: 124 QAANALPDVKIQDAPKE-NYQGRQETQD-APGSPKVSRTVLTSTVKKPLGAKKSGKTGGL 181
           Q  N L  +K  +A KE N   +QE  D  P SP++SR     +VKKPLGAKK+GKTGGL
Sbjct: 141 QVPNGLSSIKTSEALKESNTLKQQEKPDVVPVSPRISR-----SVKKPLGAKKTGKTGGL 195

Query: 182 GARKLTSKPSESLYEQKPEEPSVPISSSTSNTSSVSLPFASRFEYVDNVQSSELSSGGPQ 241
           GARKLT+K S +LY+QKPEE  +  ++S  +  S    F+SRF+Y DNVQ+ E     PQ
Sbjct: 196 GARKLTTKSSGTLYDQKPEESVIIQATSPVSAKSARSSFSSRFDYADNVQNRE-DYMSPQ 254

Query: 242 VLSHVAPPKSSSFFADYGMDNG--FQKK--SGSSKVQIQETDEARKKFSNAKSISSSQFF 297
           V+SHVAPPKSS FF +    NG  FQKK  + SSK+QIQETDEARKKF+NAKSISS+Q+F
Sbjct: 255 VVSHVAPPKSSGFFEEELEMNGGRFQKKPITSSSKLQIQETDEARKKFTNAKSISSAQYF 314

Query: 298 GDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISS 357
           G+ NNS D++ + SL+KFSGS++ISSADLFG    + +LDL A DL+NRLS QAQQDISS
Sbjct: 315 GNDNNSADLEAKSSLKKFSGSSAISSADLFGDSDGDFTLDLTAGDLLNRLSLQAQQDISS 374

Query: 358 LKNIAGETGKKLSSLASSL 376
           LKN+A ET KKL S+ASSL
Sbjct: 375 LKNMAEETKKKLGSVASSL 393

Length = 395
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 385
PLN03114395 ADP-ribosylation factor GTPase-activating protein 100.0
KOG0706454 consensus Predicted GTPase-activating protein [Sig 100.0
KOG0704386 consensus ADP-ribosylation factor GTPase activator 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 99.97
KOG0703287 consensus Predicted GTPase-activating protein [Sig 99.97
PF01412116 ArfGap: Putative GTPase activating protein for Arf 99.97
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 99.92
PLN03131 705 hypothetical protein; Provisional 99.92
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.84
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.74
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 99.64
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.49
KOG0702 524 consensus Predicted GTPase-activating protein [Sig 98.93
KOG0521785 consensus Putative GTPase activating proteins (GAP 91.6
KOG0706454 consensus Predicted GTPase-activating protein [Sig 88.88
PLN03114395 ADP-ribosylation factor GTPase-activating protein 85.64
PRK00085247 recO DNA repair protein RecO; Reviewed 80.94
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.6e-96  Score=718.30  Aligned_cols=368  Identities=69%  Similarity=1.015  Sum_probs=326.9

Q ss_pred             CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHhcCCCCC
Q 016665            1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDG   80 (385)
Q Consensus         1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~~g~~~~   80 (385)
                      .|+|++||||++++|+|+|++||||||++|+|+||.||+||++|||++||.|+++||++|+.|||.+++.||++||+...
T Consensus        19 kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD~Ws~eqL~~Mk~GGN~rA~~fF~qhG~~~~   98 (395)
T PLN03114         19 KSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNRAQVFFKQYGWSDG   98 (395)
T ss_pred             CcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCCCCCHHHHHHHHHhcCHHHHHHHHHcCCCCC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CchhhhhchHHHHHHHHHHHHHHHHHhhhhC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CcCCCCCCCCCCC-CCCc
Q 016665           81 GKIEAKYTSRAAELYKQILAKEVAKNMAEEA-GLPSSPVASQPAQAANALPDVKIQDAPKE-NYQGRQETQDAPG-SPKV  157 (385)
Q Consensus        81 ~~i~~KY~s~~a~~Yr~~l~~~v~~~~~~~~-~~~~~~~~~~~~~~~d~f~~~~~~~~p~~-~~~~~~~~~~~~~-~p~~  157 (385)
                      ..+++||+++++.+||++|+++|++.+.++. .+|+.++++.  +.+|+|++.+..+.|.. +++...+.|...+ +|++
T Consensus        99 ~~~~~KY~S~aA~~Yre~L~keVa~~~a~~~~~~p~~~~~~~--~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~s~~~  176 (395)
T PLN03114         99 GKTEAKYTSRAADLYKQILAKEVAKSKAEEELDLPPSPPDST--QVPNGLSSIKTSEALKESNTLKQQEKPDVVPVSPRI  176 (395)
T ss_pred             CCcccccCCHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcc--ccccCcccccccccccccCCcccccCCcccCCCCCC
Confidence            7899999999999999999999999998766 4566666543  38899999888776643 2333333333322 4544


Q ss_pred             ccccccccccCCCccccCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCCcccchhhhhhhcccccC
Q 016665          158 SRTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEPSVPISSSTSNT-SSVSLPFASRFEYVDNVQSSELS  236 (385)
Q Consensus       158 ~~~~~s~~~kk~~~aKk~~K~~~LgAkKv~~~~~e~~~d~~~ee~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  236 (385)
                      +     ++.|||+|+||.||+|||||+|++++..|.||||++|| .++.++++++. +...+++.+||.|.|+++. +..
T Consensus       177 ~-----~~~kk~~gak~~gktgglg~~klttk~~~~ly~qkp~e-~~~~~~~~~~~~~~~~~~~~srf~y~d~~~~-~~~  249 (395)
T PLN03114        177 S-----RSVKKPLGAKKTGKTGGLGARKLTTKSSGTLYDQKPEE-SVIIQATSPVSAKSARSSFSSRFDYADNVQN-RED  249 (395)
T ss_pred             c-----cccccccccccccccCCccccccccCCchhhhhcCccc-cCCCCCCCccccccCCCCcchhhhhcccccc-ccc
Confidence            3     56899999999999999999999999999999999999 56666555543 4456777899999999998 776


Q ss_pred             CCCCCcccccCCCCCCccc-ccCCCCcC-CcCCCC--CcccchhhhHHHHHHhccCCcCccccccCCCCCccchhHHHHh
Q 016665          237 SGGPQVLSHVAPPKSSSFF-ADYGMDNG-FQKKSG--SSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSL  312 (385)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~f-~~~gm~~~-~~~~~~--~~~~~~~~t~~a~~KFgnaKaISSd~yFGr~~~~a~~ea~~rL  312 (385)
                      .++.+..+||+||++..|| .+|||+.+ +++++.  +.+.+++++++||+||+|||+||||||||+++..+++|++.||
T Consensus       250 ~~~~~~~~hvapp~ss~ff~~e~g~~~~~~~k~~~~~~~k~q~~e~~~a~kKF~naKsisS~qfFg~~~~~~d~~~~~~l  329 (395)
T PLN03114        250 YMSPQVVSHVAPPKSSGFFEEELEMNGGRFQKKPITSSSKLQIQETDEARKKFTNAKSISSAQYFGNDNNSADLEAKSSL  329 (395)
T ss_pred             cCCcccccccCCCccchhhHHhhcCCcccccCCCCCccccccccchHHHHHHhcccccccHHhhccccccccchhhHHHH
Confidence            7788999999999999999 67999998 888876  7788999999999999999999999999999988899999999


Q ss_pred             hhccCCcccccccccCCCCCCcccchhhHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016665          313 QKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLI  377 (385)
Q Consensus       313 ~~F~gatsISS~~yFg~~~~~~~~~~sa~d~~~~~~~~a~~Dl~~lk~~v~~~A~KLs~~a~~~~  377 (385)
                      ++|+|+++|||+|||||++++.+++++|.||++||++||.+||+.||+++++++.||++||++++
T Consensus       330 ~kf~gs~~ISsad~fg~~~~d~~id~ta~dli~r~s~qa~qd~sslkn~aget~~kl~s~as~~~  394 (395)
T PLN03114        330 KKFSGSSAISSADLFGDSDGDFTLDLTAGDLLNRLSLQAQQDISSLKNMAEETKKKLGSVASSLW  394 (395)
T ss_pred             HhhccccccchHHhcCCCCccccccccHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999988889999999999999999999999999999999999999999985

>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>PRK00085 recO DNA repair protein RecO; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 6e-31
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 7e-31
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 9e-25
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 5e-22
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 3e-21
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 6e-21
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 9e-19
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 3e-17
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 1e-15
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 1e-15
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 1e-15
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 4e-12
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 4e-12
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 3e-11
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 8e-10
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 9e-10
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 3e-04
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 3e-04
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure 
Iteration: 1

 Score =  131 bits (330), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 71/94 (75%), Gaps = 2/94 (2%)
Query: 5   KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYG 63
           K CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF+RST LDS W+  QL+ M  G
Sbjct: 38  KACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVG 97
Query: 64  GNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQ 97
           GN  A  FF+QHG T       KY SRAA++Y++
Sbjct: 98  GNANATAFFRQHGCT-ANDANTKYNSRAAQMYRE 130
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
2owa_A138 Arfgap-like finger domain containing protein; zinc 1e-51
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 1e-50
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 7e-50
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 2e-49
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 4e-49
3o47_A329 ADP-ribosylation factor GTPase-activating protein 2e-41
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 8e-39
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 4e-38
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 2e-37
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 2e-37
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 8e-34
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 9e-33
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 3e-32
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 1e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
 Score =  168 bits (426), Expect = 1e-51
 Identities = 44/102 (43%), Positives = 68/102 (66%), Gaps = 1/102 (0%)

Query: 5   KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGG 64
           + CFDC ++NPTW S+++ +F+C++CS+ HR +GVHISFVRS++LD ++  QL  M  GG
Sbjct: 37  RTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGG 96

Query: 65  NNRAQVFFKQHGWTDGGK-IEAKYTSRAAELYKQILAKEVAK 105
           N RA+ +FKQ    +     +   +S     YKQIL  E+++
Sbjct: 97  NGRARNYFKQVLGVNFSPKTKEYASSICGRQYKQILDSEISE 138
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query385
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 100.0
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 100.0
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 100.0
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 100.0
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 99.97
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 99.97
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 99.97
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.96
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.94
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 99.94
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.91
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.9
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.9
1gnf_A46 Transcription factor GATA-1; zinc finger, transcri 91.93
2vut_I43 AREA, nitrogen regulatory protein AREA; transcript 88.33
3dfx_A63 Trans-acting T-cell-specific transcription factor 87.94
4gat_A66 Nitrogen regulatory protein AREA; DNA binding prot 85.04
4hc9_A115 Trans-acting T-cell-specific transcription factor; 82.47
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.7e-39  Score=284.73  Aligned_cols=110  Identities=55%  Similarity=0.997  Sum_probs=105.0

Q ss_pred             CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCC-CCHHHHHHHhcCChHHHHHHHHhcCCCC
Q 016665            1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTD   79 (385)
Q Consensus         1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~-W~~~~l~~m~~gGN~~a~~f~~~~g~~~   79 (385)
                      +|+|++|||||+++|+|+|++||||||++|+|+||.||+|||+||||+||. |+++||+.|+.+||.++|+||++|+...
T Consensus        26 ~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~~~~~  105 (149)
T 2crw_A           26 VPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCST  105 (149)
T ss_dssp             STTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHHHHHHHHCCCC
T ss_pred             CcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHHHHHHhcCCCC
Confidence            589999999999999999999999999999999999999999999999996 9999999999999999999999998764


Q ss_pred             CCchhhhhchHHHHHHHHHHHHHHHHHhhhhC
Q 016665           80 GGKIEAKYTSRAAELYKQILAKEVAKNMAEEA  111 (385)
Q Consensus        80 ~~~i~~KY~s~~a~~Yr~~l~~~v~~~~~~~~  111 (385)
                       .+|++||.++++.+||++|.+++++++..++
T Consensus       106 -~~i~~KY~s~~a~~Yr~~l~~~~~~~~~~~~  136 (149)
T 2crw_A          106 -NDTNAKYNSRAAQLYREKIKSLASQATRKHG  136 (149)
T ss_dssp             -CCHHHHTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             -cchhhCcCcHHHHHHHHHHHHHHHHHHHHcC
Confidence             7899999999999999999999999887654
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Back     alignment and structure
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Back     alignment and structure
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Back     alignment and structure
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Back     alignment and structure
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 385
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 2e-32
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (291), Expect = 2e-32
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 5   KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGG 64
            +C DC A +PTW S   GI  CI+CS +HR LGVH S ++S  LD     +L +    G
Sbjct: 16  DVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIG 75

Query: 65  NNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQ--ILAKEVAK 105
           N       +    ++      K    +  + ++  I AK + +
Sbjct: 76  NAGFNEIMECCLPSEDPV---KPNPGSDMIARKDYITAKYMER 115

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query385
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 99.97
d1y0ja139 Erythroid transcription factor GATA-1 {Mouse (Mus 88.19
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 86.14
d3gata_66 Erythroid transcription factor GATA-1 {Chicken (Ga 81.85
d2vuti142 Erythroid transcription factor GATA-1 {Emericella 80.7
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.6e-33  Score=238.03  Aligned_cols=76  Identities=38%  Similarity=0.670  Sum_probs=74.2

Q ss_pred             CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHhcC
Q 016665            1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHG   76 (385)
Q Consensus         1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~~g   76 (385)
                      +|+|++|||||+++|+|+|++||||||+.|+|+||.||+|||+|||++||.|++++|+.|+.+||..+|+||+++.
T Consensus        12 ~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~~~ea~~   87 (122)
T d1dcqa2          12 MTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCL   87 (122)
T ss_dssp             STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTC
T ss_pred             CCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHHHHHhhC
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999773
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure