Citrus Sinensis ID: 016673
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 385 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GW61 | 504 | Sugar transport protein 1 | yes | no | 0.955 | 0.730 | 0.779 | 1e-172 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.942 | 0.707 | 0.614 | 1e-129 | |
| Q10710 | 522 | Sugar carrier protein A O | N/A | no | 0.945 | 0.697 | 0.599 | 1e-119 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.924 | 0.676 | 0.576 | 1e-117 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.937 | 0.702 | 0.545 | 1e-114 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.932 | 0.698 | 0.540 | 1e-113 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.937 | 0.698 | 0.541 | 1e-111 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.932 | 0.686 | 0.548 | 1e-111 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.932 | 0.687 | 0.532 | 1e-107 | |
| Q39228 | 514 | Sugar transport protein 4 | no | no | 0.927 | 0.694 | 0.515 | 1e-106 |
| >sp|Q8GW61|STP14_ARATH Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 603 bits (1554), Expect = e-172, Method: Compositional matrix adjust.
Identities = 287/368 (77%), Positives = 323/368 (87%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG TD G LKRAHLYE+RITSYF+ AC+V +MGGSLFGYDLGVSGGVTSMDDFLKEF
Sbjct: 1 MAGGALTDEGGLKRAHLYEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP +Y+RKQ HL ETDYCKYDNQ+LTLFTSSLYFAGL+STFGASYVTR GRR SI+VGS
Sbjct: 61 FPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
VSFF+G ++NA A +I ML+LGRIFLG+GIGFGNQAVPLYLSEMAPAKIRG VNQLFQLT
Sbjct: 121 VSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TC+GILVANLINY TE+IHPWGWRLSLGLATVPA LMF+GGL LPETPNSLVEQGKL++A
Sbjct: 181 TCIGILVANLINYKTEQIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKA 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
+ VL KVRGT N++AEF DL++AS+AARA+KNPFRNL ++NRPQLVIGA+G+PAFQQLT
Sbjct: 241 KAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
GMNSILFYAPV+FQSLGFG A+L SS IT AL +AA++SM DKFGRR LEA E
Sbjct: 301 GMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVE 360
Query: 361 MIIYMVTT 368
M YMV
Sbjct: 361 MFCYMVVV 368
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 463 bits (1191), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/368 (61%), Positives = 289/368 (78%), Gaps = 5/368 (1%)
Query: 1 MAGGGFTDAGDLK-RAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKE 59
MAGG F G K RA Y+ ++TSY +IAC+VAA+GGS+FGYD+G+SGGVTSMD+FL+E
Sbjct: 1 MAGGSFGPTGVAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEE 60
Query: 60 FFPKVY-RRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV 118
FF VY ++KQAH E++YCKYDNQ L FTSSLY AGLVST AS +TR+ GRRASI+
Sbjct: 61 FFHTVYEKKKQAH--ESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVC 118
Query: 119 GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQ 178
G +SF IG+ LNA AV+++MLL GRI LG+GIGFGNQAVPLYLSE+AP +RG +N +FQ
Sbjct: 119 GGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQ 178
Query: 179 LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238
L T +GI AN++NYGT+++ PWGWRLSLGLA PA LM +GG FLPETPNSLVE+G +
Sbjct: 179 LATTIGIFTANMVNYGTQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTE 238
Query: 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298
R+VL K+RGT NV+AE D++DAS A +IK+PFRN+ +K++RPQLV+ A+ +P FQ
Sbjct: 239 RGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVM-AICMPMFQI 297
Query: 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358
LTG+NSILFYAPV+FQ++GFG A+LYSS +TG L ++ IS+ VD+ GRRA + G
Sbjct: 298 LTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGG 357
Query: 359 TEMIIYMV 366
+MII V
Sbjct: 358 IQMIICQV 365
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q10710|STA_RICCO Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/367 (59%), Positives = 275/367 (74%), Gaps = 3/367 (0%)
Query: 1 MAGGGFTDAGDLK-RAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKE 59
MAGG AG K RA Y+ ++T +ACMVAA+GGS+FGYD+G+SGGV SMD FL++
Sbjct: 1 MAGGSLAPAGVAKERAEQYQGKVTFAVFVACMVAAVGGSIFGYDIGISGGVISMDAFLEK 60
Query: 60 FFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVG 119
FF VY +K+ H E +YCKYD+Q L FTSSLY AGL ++ A +TR GRRASI+ G
Sbjct: 61 FFRSVYLKKK-HAHENNYCKYDDQRLAAFTSSLYLAGLAASLVAGPITRIYGRRASIISG 119
Query: 120 SVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQL 179
+SF IGA LNA A++++MLLLGRI LG+GIGFGNQAVPLYLSEMAP +RG +N +FQL
Sbjct: 120 GISFLIGAALNATAINLAMLLLGRIMLGVGIGFGNQAVPLYLSEMAPTHLRGGLNIMFQL 179
Query: 180 TTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDE 239
T GI AN++NYGT K+ WGWRLSLGLA PA LM +GGL LPETPNSL+EQG ++
Sbjct: 180 ATTSGIFTANMVNYGTHKLESWGWRLSLGLAAAPALLMTIGGLLLPETPNSLIEQGLHEK 239
Query: 240 ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299
R VLEK+RGT +VDAEF D++DAS A +IK+PFRN+ +K+NRPQLV+ A+ +P FQ L
Sbjct: 240 GRNVLEKIRGTKHVDAEFQDMLDASELANSIKHPFRNILEKRNRPQLVM-AIFMPTFQIL 298
Query: 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGT 359
TG+N ILFYAP +FQS+GFG AALYSS +TG LC + IS+A VD+ GRR + G
Sbjct: 299 TGINIILFYAPPLFQSMGFGGNAALYSSAVTGAVLCSSTFISIATVDRLGRRFLLISGGI 358
Query: 360 EMIIYMV 366
+MI V
Sbjct: 359 QMITCQV 365
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Ricinus communis (taxid: 3988) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 421 bits (1081), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/364 (57%), Positives = 275/364 (75%), Gaps = 8/364 (2%)
Query: 1 MAGGGF-TDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKE 59
M GGGF T A ++ +E +IT +I+C++AA GG +FGYD+GVSGGVTSM DFL++
Sbjct: 1 MTGGGFATSANGVE----FEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEK 56
Query: 60 FFPKVYRRKQAHL-TETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV 118
FFP VYR+ A +++YCKYDNQ L LFTSSLY AGL +TF ASY TR+ GRR ++++
Sbjct: 57 FFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLI 116
Query: 119 GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQ 178
V F IG LNA A ++ML+ GRI LG G+GF NQAVPL+LSE+AP +IRG +N LFQ
Sbjct: 117 AGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQ 176
Query: 179 LTTCLGILVANLINYGTEKIH-PWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKL 237
L +GIL ANL+NYGT KI WGWRLSLGLA +PA L+ VG L + ETPNSLVE+G+L
Sbjct: 177 LNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRL 236
Query: 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQ 297
DE + VL ++RGT NV+ EF+DL++AS A+ +K+PFRNL +++NRPQLVI A+ + FQ
Sbjct: 237 DEGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVI-AVALQIFQ 295
Query: 298 QLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEA 357
Q TG+N+I+FYAPV+F +LGFGS A+LYS+V+TG ++ L+S+ VDK GRR LEA
Sbjct: 296 QCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEA 355
Query: 358 GTEM 361
G +M
Sbjct: 356 GVQM 359
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/363 (54%), Positives = 273/363 (75%), Gaps = 2/363 (0%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F YE +T++ ++ C+VAAMGG LFGYDLG+SGGVTSM++FL +F
Sbjct: 1 MAGGAFVSE-GGGGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKF 59
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP+V + + +T YCK+DNQ+L LFTSSLY A LV++F AS +TR GR+ S+ +G
Sbjct: 60 FPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGG 119
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
++F IGA+ NA AV++SML++GR+ LG+G+GF NQ+ P+YLSEMAPAKIRGA+N FQ+
Sbjct: 120 LAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMA 179
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
+GILVANLINYGT K+ GWR+SLGLA VPA +M +G LP+TPNS++E+GK +EA
Sbjct: 180 ITIGILVANLINYGTSKMAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEA 239
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
+++L+K+RG NVD EF DLIDA AA+ ++NP++N+ + K RP L+ + IP FQQ+T
Sbjct: 240 KQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCS-AIPFFQQIT 298
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G+N I+FYAPV+F++LGFG AAL S+VITG+ ++ +S+ VD++GRR FLE G +
Sbjct: 299 GINVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQ 358
Query: 361 MII 363
M I
Sbjct: 359 MFI 361
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/372 (54%), Positives = 280/372 (75%), Gaps = 13/372 (3%)
Query: 1 MAGGGFTD----AGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDF 56
MAGG F D GD YE R+T++ +I C+VAAMGG LFGYD+G+SGGV SM+DF
Sbjct: 1 MAGGAFIDESGHGGD------YEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDF 54
Query: 57 LKEFFPKVYRRKQAHL-TETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRAS 115
L +FFP V R+ Q ET+YCKYDN++LTLFTSSLY A L ++F AS +TR GR+ S
Sbjct: 55 LTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVS 114
Query: 116 IMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQ 175
+++GS++F GA+LN A+++ ML++GR+FLG+G+GF NQ+VPLYLSEMAPAKIRGA+N
Sbjct: 115 MVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNI 174
Query: 176 LFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 234
FQL +GIL AN++NY T K+ GWRLSLGLA VPA +M VG FLP+TPNS++E+
Sbjct: 175 GFQLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILER 234
Query: 235 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIP 294
G ++A+++L+K+RGT V+ EF++L +A AA+ +K+P+ N+ + + RPQL IP
Sbjct: 235 GNKEKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTF-IP 293
Query: 295 AFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFF 354
FQQLTG+N I+FYAPV+F+++GFG+ A+L S+VITG+ ++ ++S+ VDKFGRRA F
Sbjct: 294 FFQQLTGINVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALF 353
Query: 355 LEAGTEMIIYMV 366
L+ G +MI+ +
Sbjct: 354 LQGGFQMIVTQI 365
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/364 (54%), Positives = 271/364 (74%), Gaps = 3/364 (0%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F + YE +T + ++ C+VAAMGG LFGYDLG+SGGVTSM++FL +F
Sbjct: 1 MAGGAFVSE-GGGGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKF 59
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP+V ++ ET YCK+DNQ+L LFTSSLY A L S+F AS VTR GR+ S+ VG
Sbjct: 60 FPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGG 119
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
V+F IG++ NA A +++ML++GR+ LG+G+GF NQ+ P+YLSEMAPAKIRGA+N FQ+
Sbjct: 120 VAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMA 179
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
+GIL+ANLINYGT ++ GWR+SLGLA VPA +M +G LP+TPNS++E+GK ++A
Sbjct: 180 ITIGILIANLINYGTSQMAKNGWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQA 239
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKK-KNRPQLVIGALGIPAFQQL 299
R++L+K+RG NVD EF DL DA AA+ + NP++N+F++ K RP LV + IP FQQ+
Sbjct: 240 REMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCS-AIPFFQQI 298
Query: 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGT 359
TG+N I+FYAPV+F++LGF A+L S+VITG ++ L+S+ VD++GRR FLE G
Sbjct: 299 TGINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGI 358
Query: 360 EMII 363
+MI+
Sbjct: 359 QMIV 362
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/363 (54%), Positives = 268/363 (73%), Gaps = 4/363 (1%)
Query: 2 AGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFF 61
A GG +G ++ +Y +T Y + C+VAAMGG +FGYD+G+SGGVTSMD FLK+FF
Sbjct: 3 AVGGIPPSGGNRK--VYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFF 60
Query: 62 PKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSV 121
P VYR+K+A + YC+YD+Q LT+FTSSLY A L+++ AS +TR GR+ S++ G V
Sbjct: 61 PSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGV 120
Query: 122 SFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTT 181
F GAI+N A + ML+LGRI LG GIGF NQ+VPLYLSEMAP K RGA+N FQL+
Sbjct: 121 LFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 180
Query: 182 CLGILVANLINYGTEKIH-PWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
+GILVAN++NY KI WGWRLSLG A VPA ++ VG L LP+TPNS++E+G+ +EA
Sbjct: 181 TIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEA 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
R L++VRG +VD EF+DL+ AS ++ +++P+RNL ++K RP L + A+ IP FQQLT
Sbjct: 241 RAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSM-AIAIPFFQQLT 299
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G+N I+FYAPV+F ++GFGS AAL S+VITG+ A ++S+ VDK+GRR FLE G +
Sbjct: 300 GINVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGVQ 359
Query: 361 MII 363
M+I
Sbjct: 360 MLI 362
|
Ricinus communis (taxid: 3988) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/364 (53%), Positives = 263/364 (72%), Gaps = 5/364 (1%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
M GGF GD ++A Y ++T + L C+VAAMGG +FGYD+G+SGGVTSM FLK F
Sbjct: 1 MPAGGFV-VGDGQKA--YPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRF 57
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP VYR++Q + YC+YD+ LT+FTSSLY A L+S+ AS VTR GRR S++ G
Sbjct: 58 FPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGG 117
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
+ F GA++N A H+ ML++GRI LG GIGF NQAVPLYLSEMAP K RGA+N FQL+
Sbjct: 118 ILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLS 177
Query: 181 TCLGILVANLINYGTEKIH-PWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDE 239
+GILVA ++NY KI WGWRLSLG A VPA ++ +G L LP+TPNS++E+G+ +E
Sbjct: 178 ITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEE 237
Query: 240 ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299
A+ L ++RG +V EF DL+ AS +++I++P+RNL ++K RP L + A+ IP FQQL
Sbjct: 238 AKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTM-AVMIPFFQQL 296
Query: 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGT 359
TG+N I+FYAPV+F ++GF + A+L S+V+TG A L+S+ VD++GRR FLE GT
Sbjct: 297 TGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGT 356
Query: 360 EMII 363
+M+I
Sbjct: 357 QMLI 360
|
Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/365 (51%), Positives = 263/365 (72%), Gaps = 8/365 (2%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG + ++ Y Y++T + C + A GG +FGYDLG+SGGVTSM+ FL+EF
Sbjct: 1 MAGGFVSQTPGVRN---YNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEF 57
Query: 61 FPKVYRR-KQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVG 119
FP VY++ K AH E +YC++D+Q+LTLFTSSLY A LVS+ AS +TR GR+ S+ +G
Sbjct: 58 FPYVYKKMKSAH--ENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLG 115
Query: 120 SVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQL 179
+FFIG+ N A +I+MLL+GRI LG G+GF NQ+VP+YLSEMAP +RGA N FQ+
Sbjct: 116 GFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQV 175
Query: 180 TTCLGILVANLINYGTEKIH-PWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238
GI+VA +INY T ++ GWR+SLGLA VPA ++ +G L LP+TPNSL+E+G +
Sbjct: 176 AIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTE 235
Query: 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298
EA+++L+ +RGT VD EF DLIDAS ++ +K+P++N+ + RPQL++ IP FQQ
Sbjct: 236 EAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCF-IPFFQQ 294
Query: 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358
LTG+N I FYAPV+FQ+LGFGS A+L S+++TGI + +S+ VD+FGRR FL+ G
Sbjct: 295 LTGINVITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGG 354
Query: 359 TEMII 363
+M++
Sbjct: 355 IQMLV 359
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 385 | ||||||
| 255552117 | 516 | sugar transporter, putative [Ricinus com | 0.950 | 0.709 | 0.852 | 0.0 | |
| 449466087 | 522 | PREDICTED: sugar transport protein 14-li | 0.922 | 0.680 | 0.847 | 1e-178 | |
| 255589859 | 509 | sugar transporter, putative [Ricinus com | 0.950 | 0.719 | 0.822 | 1e-178 | |
| 224142179 | 508 | predicted protein [Populus trichocarpa] | 0.942 | 0.714 | 0.829 | 1e-178 | |
| 356495228 | 510 | PREDICTED: sugar transport protein 14-li | 0.950 | 0.717 | 0.806 | 1e-176 | |
| 147799431 | 547 | hypothetical protein VITISV_012307 [Viti | 0.950 | 0.669 | 0.800 | 1e-176 | |
| 225445142 | 512 | PREDICTED: sugar transport protein 14 [V | 0.950 | 0.714 | 0.800 | 1e-176 | |
| 356529642 | 512 | PREDICTED: sugar transport protein 14-li | 0.950 | 0.714 | 0.797 | 1e-175 | |
| 449443165 | 508 | PREDICTED: sugar transport protein 14-li | 0.955 | 0.724 | 0.793 | 1e-175 | |
| 449521365 | 534 | PREDICTED: sugar transport protein 14-li | 0.942 | 0.679 | 0.796 | 1e-173 |
| >gi|255552117|ref|XP_002517103.1| sugar transporter, putative [Ricinus communis] gi|223543738|gb|EEF45266.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/366 (85%), Positives = 346/366 (94%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGGG +D G LKRAHLYEY+IT YF+ + +VAA+GGSLFGYDLGVSGGVTSMDDFLK+F
Sbjct: 1 MAGGGLSDGGPLKRAHLYEYKITGYFIFSSIVAALGGSLFGYDLGVSGGVTSMDDFLKDF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FPKVY+RKQ HL ETDYCKYDNQ+LTLFTSSLYFA LVSTFGASY+TR++GRRASI+VGS
Sbjct: 61 FPKVYKRKQEHLNETDYCKYDNQMLTLFTSSLYFAALVSTFGASYITRNKGRRASIIVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
+SFF+GAILNA AV+I+ML++GRI LG+GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT
Sbjct: 121 ISFFLGAILNAAAVNIAMLIIGRILLGIGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGIL+ANLINYGTEKIHPWGWRLSLGLATVPATLMF+GG+FLPETPNSLVEQG+L+E
Sbjct: 181 TCLGILIANLINYGTEKIHPWGWRLSLGLATVPATLMFIGGVFLPETPNSLVEQGRLEEG 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
RKVLEKVRGTA VDAEF+DLIDASNAARAI++PF+NL K+KNRPQL+IGALGIPAFQQLT
Sbjct: 241 RKVLEKVRGTAKVDAEFADLIDASNAARAIQHPFKNLLKRKNRPQLIIGALGIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
GMNSILFYAPVIFQSLGFGSGAALYSSVIT AL + ALISMA VDK+GRRAFFLEAGTE
Sbjct: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITSGALVLGALISMALVDKYGRRAFFLEAGTE 360
Query: 361 MIIYMV 366
M+ YMV
Sbjct: 361 MLCYMV 366
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449466087|ref|XP_004150758.1| PREDICTED: sugar transport protein 14-like [Cucumis sativus] gi|449527949|ref|XP_004170970.1| PREDICTED: sugar transport protein 14-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 301/355 (84%), Positives = 328/355 (92%)
Query: 12 LKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAH 71
LKRAHLYEYRITSYF+ AC+VAA+GGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQ H
Sbjct: 13 LKRAHLYEYRITSYFVTACIVAALGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQLH 72
Query: 72 LTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA 131
L ETDYCKYDNQ+LTLFTSSLYFAGLVSTF ASYVTR+RGRRASI+VGS+SFF+G ++NA
Sbjct: 73 LKETDYCKYDNQILTLFTSSLYFAGLVSTFAASYVTRNRGRRASILVGSISFFLGGVINA 132
Query: 132 CAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI 191
AV+I ML++GRIFLG+GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGIL+AN I
Sbjct: 133 AAVNIEMLIIGRIFLGVGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILIANFI 192
Query: 192 NYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTA 251
NYGT+KIHPWGWRLSLGLATVPATLMF+GGLFLPETPNSLVEQGK++E R VLEK+RGT
Sbjct: 193 NYGTDKIHPWGWRLSLGLATVPATLMFIGGLFLPETPNSLVEQGKMEEGRAVLEKIRGTK 252
Query: 252 NVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 311
VDAEF DLIDASN ARAIK+PF+NL K+KNRPQLVIGALGIPAFQQLTGMNSILFYAPV
Sbjct: 253 KVDAEFDDLIDASNEARAIKHPFKNLLKRKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 312
Query: 312 IFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMV 366
+FQSLGFGS AALYSS IT AL +A ISM VDKFGRRAFFLEAG EMI ++
Sbjct: 313 MFQSLGFGSDAALYSSTITSGALVVATFISMLLVDKFGRRAFFLEAGAEMICCLI 367
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255589859|ref|XP_002535110.1| sugar transporter, putative [Ricinus communis] gi|223524019|gb|EEF27275.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 301/366 (82%), Positives = 334/366 (91%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGGGFTD G++KRAHLYEY+ITSYF+ AC++AA GGSLFGYDLGVSGGVTSMDDFLKEF
Sbjct: 1 MAGGGFTDTGNIKRAHLYEYKITSYFVFACVIAASGGSLFGYDLGVSGGVTSMDDFLKEF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP V+ +K AHL ETDYCKYDNQ+LTLF+SSLYFA L +TFGAS VTR+RGRRASI+VGS
Sbjct: 61 FPTVFEKKHAHLHETDYCKYDNQILTLFSSSLYFAALFATFGASVVTRTRGRRASILVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
VSFFIGAI+NA A +I+ML++GR LG GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT
Sbjct: 121 VSFFIGAIVNAFAKNIAMLIIGRCLLGGGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGILVAN INYGTEKIHPWGWRLSLGLA +PAT+MFVGGLFLPETPNSL+EQGKL+E
Sbjct: 181 TCLGILVANFINYGTEKIHPWGWRLSLGLAALPATIMFVGGLFLPETPNSLIEQGKLEEG 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
R++LEKVRGT VDAEF DL+DASNAARAIK+PF+NL K+KNRPQLVIGALGIPAFQQLT
Sbjct: 241 RRILEKVRGTTQVDAEFDDLVDASNAARAIKHPFKNLLKRKNRPQLVIGALGIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G NSILFYAPVIFQSLGF +GA+LYS+VIT AL + ALISM+FVDKFGRRAFFLEAG E
Sbjct: 301 GNNSILFYAPVIFQSLGFSNGASLYSAVITNSALVVGALISMSFVDKFGRRAFFLEAGAE 360
Query: 361 MIIYMV 366
M MV
Sbjct: 361 MFFIMV 366
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142179|ref|XP_002324436.1| predicted protein [Populus trichocarpa] gi|222865870|gb|EEF03001.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 301/363 (82%), Positives = 331/363 (91%)
Query: 4 GGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPK 63
GGF DAG+LKRAHLYEY+IT YF+ AC+VAA+GGSLFGYDLGVSGGVTSMDDFL EFFP
Sbjct: 3 GGFVDAGNLKRAHLYEYKITGYFIFACIVAALGGSLFGYDLGVSGGVTSMDDFLVEFFPD 62
Query: 64 VYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSF 123
VYRRK AHL ETDYCKYD+QVLTLFTSSLYFA LVSTFGASYVTRSRGRRASI+VG+VSF
Sbjct: 63 VYRRKHAHLRETDYCKYDDQVLTLFTSSLYFAALVSTFGASYVTRSRGRRASILVGAVSF 122
Query: 124 FIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCL 183
F GA++NA A +I+ML++GR FLG GIGF NQAVPLYLSEMAPAK+RGAVNQLFQLTTCL
Sbjct: 123 FTGALVNAFAKNITMLIIGRCFLGAGIGFSNQAVPLYLSEMAPAKVRGAVNQLFQLTTCL 182
Query: 184 GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKV 243
GILVAN INYGTEKIHPWGWRLSLGLATVPAT+MFVGG+FLPETPNSLVEQGKL+EAR+V
Sbjct: 183 GILVANFINYGTEKIHPWGWRLSLGLATVPATIMFVGGIFLPETPNSLVEQGKLEEARRV 242
Query: 244 LEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMN 303
LEKVRGT VDAEF+DL+DASN ARAIK+PFRNL +KNRPQ +IGAL IPAFQQLTGMN
Sbjct: 243 LEKVRGTTRVDAEFADLVDASNEARAIKHPFRNLLARKNRPQFIIGALAIPAFQQLTGMN 302
Query: 304 SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMII 363
SILFYAPV+FQSLGF + A+L+SSVIT AL + ALISMA VDKFGRRAFFLEAGTEM
Sbjct: 303 SILFYAPVLFQSLGFSNDASLFSSVITNAALVVGALISMALVDKFGRRAFFLEAGTEMFF 362
Query: 364 YMV 366
M+
Sbjct: 363 VMI 365
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495228|ref|XP_003516481.1| PREDICTED: sugar transport protein 14-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 295/366 (80%), Positives = 332/366 (90%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGGGF+DAG LKRAHLY+Y+IT YF+ +C+V A+GGSLFGYDLGVSGGVTSMDDFL EF
Sbjct: 1 MAGGGFSDAGTLKRAHLYQYKITGYFIYSCIVGALGGSLFGYDLGVSGGVTSMDDFLIEF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FPKVY +K AHL ETDYCKYD+Q LTLFTSSLYFA LVSTFGAS VT+++GR+ASI+ GS
Sbjct: 61 FPKVYEKKHAHLVETDYCKYDDQTLTLFTSSLYFAALVSTFGASSVTKNKGRKASILAGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
VSFFIGAILNA A +ISML++GRI LG+GIGFGNQAVPLYLSEMAP+K+RGAVNQLFQLT
Sbjct: 121 VSFFIGAILNAAARNISMLIIGRILLGVGIGFGNQAVPLYLSEMAPSKVRGAVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGIL+ANL+NYGTEK+HPWGWRLSLGLAT PA LMF+GGLF PETPNSLVEQG+ DE
Sbjct: 181 TCLGILIANLVNYGTEKLHPWGWRLSLGLATFPAVLMFIGGLFCPETPNSLVEQGRFDEG 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
R VLEKVRGT NVDAEF DLI+AS A++IKNPF+NL +KNRPQL+IGA+ IPAFQQLT
Sbjct: 241 RAVLEKVRGTPNVDAEFDDLIEASREAKSIKNPFQNLLLRKNRPQLIIGAVAIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G NSILFYAPVIFQ+LGFGSGA+LYSSVIT +AL +A LISMAFVD+FGRRAFFLEAG E
Sbjct: 301 GNNSILFYAPVIFQTLGFGSGASLYSSVITSVALVVATLISMAFVDRFGRRAFFLEAGAE 360
Query: 361 MIIYMV 366
MII MV
Sbjct: 361 MIICMV 366
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147799431|emb|CAN76865.1| hypothetical protein VITISV_012307 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 293/366 (80%), Positives = 336/366 (91%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F D KRAHLYEY+IT YF+ +C+VAA GG+LFGYDLGVSGGVTSMDDFLK F
Sbjct: 1 MAGGAFEDTEAAKRAHLYEYKITGYFIFSCIVAASGGALFGYDLGVSGGVTSMDDFLKRF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FPKVYRRKQ HL ETDYCKY++Q+LTLFTSSLYFAGLVSTF AS+VTR +GR+ASI+VGS
Sbjct: 61 FPKVYRRKQEHLKETDYCKYESQILTLFTSSLYFAGLVSTFAASHVTRKKGRKASILVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
+SFF+GA+LNA AV+I+ML++GRI LG+GIGFGNQAVPLYLSEM+PAKIRGAVNQLFQL+
Sbjct: 121 ISFFLGAVLNAAAVNIAMLIIGRILLGVGIGFGNQAVPLYLSEMSPAKIRGAVNQLFQLS 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGILVAN INY T+K+HPWGWRLSLGLATVPAT+MF+GGL LPETPNSLVEQGK +EA
Sbjct: 181 TCLGILVANFINYETDKLHPWGWRLSLGLATVPATVMFLGGLALPETPNSLVEQGKFEEA 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
RKVLEKVRGT+ ++AEF+DL+DAS AA+AIK+PFRNL K++NRPQL+IGALGIPAFQQLT
Sbjct: 241 RKVLEKVRGTSKIEAEFADLVDASKAAQAIKHPFRNLLKRRNRPQLIIGALGIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
GMNSILFYAPVIFQSLGFGS A+LYSS+IT AL +A+LISMAFVD++GRR FFLEAG E
Sbjct: 301 GMNSILFYAPVIFQSLGFGSNASLYSSLITSGALVLASLISMAFVDRWGRRKFFLEAGCE 360
Query: 361 MIIYMV 366
MI YMV
Sbjct: 361 MICYMV 366
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445142|ref|XP_002283960.1| PREDICTED: sugar transport protein 14 [Vitis vinifera] gi|297738778|emb|CBI28023.3| unnamed protein product [Vitis vinifera] gi|310877808|gb|ADP37135.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust.
Identities = 293/366 (80%), Positives = 336/366 (91%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F D KRAHLYEY+IT YF+ +C+VAA GG+LFGYDLGVSGGVTSMDDFLK F
Sbjct: 1 MAGGAFEDTEAAKRAHLYEYKITGYFIFSCIVAASGGALFGYDLGVSGGVTSMDDFLKRF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FPKVYRRKQ HL ETDYCKY++Q+LTLFTSSLYFAGLVSTF AS+VTR +GR+ASI+VGS
Sbjct: 61 FPKVYRRKQEHLKETDYCKYESQILTLFTSSLYFAGLVSTFAASHVTRKKGRKASILVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
+SFF+GA+LNA AV+I+ML++GRI LG+GIGFGNQAVPLYLSEM+PAKIRGAVNQLFQL+
Sbjct: 121 ISFFLGAVLNAAAVNIAMLIIGRILLGVGIGFGNQAVPLYLSEMSPAKIRGAVNQLFQLS 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGILVAN INY T+K+HPWGWRLSLGLATVPAT+MF+GGL LPETPNSLVEQGK +EA
Sbjct: 181 TCLGILVANFINYETDKLHPWGWRLSLGLATVPATVMFLGGLALPETPNSLVEQGKFEEA 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
RKVLEKVRGT+ ++AEF+DL+DAS AA+AIK+PFRNL K++NRPQL+IGALGIPAFQQLT
Sbjct: 241 RKVLEKVRGTSKIEAEFADLVDASKAAQAIKHPFRNLLKRRNRPQLIIGALGIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
GMNSILFYAPVIFQSLGFGS A+LYSS+IT AL +A+LISMAFVD++GRR FFLEAG E
Sbjct: 301 GMNSILFYAPVIFQSLGFGSNASLYSSLITSGALVLASLISMAFVDRWGRRKFFLEAGCE 360
Query: 361 MIIYMV 366
MI YMV
Sbjct: 361 MICYMV 366
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529642|ref|XP_003533398.1| PREDICTED: sugar transport protein 14-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 292/366 (79%), Positives = 329/366 (89%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGGGF+DAG LKRAHLY+Y+IT YF+ +C+V A+GG+LFGYDLGVSGGVTSMDDFL +F
Sbjct: 1 MAGGGFSDAGTLKRAHLYQYKITGYFIFSCIVGALGGALFGYDLGVSGGVTSMDDFLIQF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FPKVY +K AHL ETDYCKYD+Q+LTLFTSSLYFA LVSTFGAS VT+++GR+ASI+ GS
Sbjct: 61 FPKVYEKKHAHLAETDYCKYDDQILTLFTSSLYFAALVSTFGASSVTKTKGRKASILAGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
VSFFIGAILNA A I+ML+LGRI LG+GIGFGNQAVPLYLSEMAPAK+RGAVNQLFQLT
Sbjct: 121 VSFFIGAILNAAAKSITMLILGRILLGVGIGFGNQAVPLYLSEMAPAKVRGAVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGIL+ANL+NYGTEKIHPWGWRLSLGLATVPA MF+GG PETPNSLVEQG+ DE
Sbjct: 181 TCLGILIANLVNYGTEKIHPWGWRLSLGLATVPAVFMFIGGCLCPETPNSLVEQGRFDEG 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
R VLEKVRGT NVDAEF DLI+AS A++IKNPF+NL +KNRPQ++IGA IPAFQQLT
Sbjct: 241 RAVLEKVRGTPNVDAEFDDLIEASREAKSIKNPFQNLLLRKNRPQVIIGAFAIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G NSILFYAPVIFQ+LGFGSGA+LYSSVIT +AL +A LISMAFVDKFGRRAFFLEAG E
Sbjct: 301 GNNSILFYAPVIFQTLGFGSGASLYSSVITSVALVVATLISMAFVDKFGRRAFFLEAGAE 360
Query: 361 MIIYMV 366
MII +V
Sbjct: 361 MIICLV 366
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443165|ref|XP_004139351.1| PREDICTED: sugar transport protein 14-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 292/368 (79%), Positives = 331/368 (89%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGGGFT+ G LKRAHLYEY+ T YF AC+VAA+GGSLFGYDLGVSGGVTSMDDFLK+F
Sbjct: 1 MAGGGFTNGGQLKRAHLYEYKFTWYFFSACVVAALGGSLFGYDLGVSGGVTSMDDFLKQF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FPKVY RKQ H+ ETDYCKYD+Q+LTLFTSSLYFAGL+STF AS+VTR+ GRRASI+VGS
Sbjct: 61 FPKVYNRKQLHIKETDYCKYDDQILTLFTSSLYFAGLLSTFFASHVTRNYGRRASILVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
VSFF+G ++NA A++I ML++GRI LG+GIGFGNQAVPLYLSE+APAKIRG VNQLFQLT
Sbjct: 121 VSFFLGGLINAVAINIPMLIIGRILLGIGIGFGNQAVPLYLSEIAPAKIRGRVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TCLGIL+AN INYGTEKIHPWGWRLSLGLAT PA +MF+GGLFLPETPNSLVEQGKL+EA
Sbjct: 181 TCLGILIANFINYGTEKIHPWGWRLSLGLATFPAAMMFIGGLFLPETPNSLVEQGKLEEA 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
R+VLEK+RGT N++AEF+DL+DASN ARA+KNPFRNL ++KNRPQLVIGA+GIPAFQQLT
Sbjct: 241 RRVLEKIRGTTNIEAEFADLVDASNQARAVKNPFRNLLRRKNRPQLVIGAIGIPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G NSILFYAPVI QSLGFGS A+LYSS T AL +AALISM VDKFGRR FFLEAG E
Sbjct: 301 GNNSILFYAPVILQSLGFGSAASLYSSAFTSGALVVAALISMFLVDKFGRRKFFLEAGFE 360
Query: 361 MIIYMVTT 368
M +YM+
Sbjct: 361 MFVYMIAV 368
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521365|ref|XP_004167700.1| PREDICTED: sugar transport protein 14-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 289/363 (79%), Positives = 328/363 (90%)
Query: 4 GGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPK 63
GGFT+ G LKRAHLYEY+ T YF AC+VAA+GGSLFGYDLGVSGGVTSMDDFLK+FFPK
Sbjct: 30 GGFTNGGQLKRAHLYEYKFTWYFFSACVVAALGGSLFGYDLGVSGGVTSMDDFLKQFFPK 89
Query: 64 VYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSF 123
VY RKQ H+ ETDYCKYD+Q+LTLFTSSLYFAGL+STF AS+VTR+ GRRASI+VGSVSF
Sbjct: 90 VYNRKQLHIKETDYCKYDDQILTLFTSSLYFAGLLSTFFASHVTRNYGRRASILVGSVSF 149
Query: 124 FIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCL 183
F+G ++NA A++I ML++GRI LG+GIGFGNQAVPLYLSE+APAKIRG VNQLFQLTTCL
Sbjct: 150 FLGGLINAVAINIPMLIIGRILLGIGIGFGNQAVPLYLSEIAPAKIRGRVNQLFQLTTCL 209
Query: 184 GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKV 243
GIL+AN INYGTEKIHPWGWRLSLGLAT PA +MF+GGLFLPETPNSLVEQGKL+EAR+V
Sbjct: 210 GILIANFINYGTEKIHPWGWRLSLGLATFPAAMMFIGGLFLPETPNSLVEQGKLEEARRV 269
Query: 244 LEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMN 303
LEK+RGT N++AEF+DL+DASN ARA+KNPFRNL ++KNRPQLVIGA+GIPAFQQLTG N
Sbjct: 270 LEKIRGTTNIEAEFADLVDASNQARAVKNPFRNLLRRKNRPQLVIGAIGIPAFQQLTGNN 329
Query: 304 SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMII 363
SILFYAPVI QSLGFGS A+LYSS T AL +AALISM VDKFGRR FFLEAG EM +
Sbjct: 330 SILFYAPVILQSLGFGSAASLYSSAFTSGALVVAALISMFLVDKFGRRKFFLEAGFEMFV 389
Query: 364 YMV 366
YM+
Sbjct: 390 YMI 392
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 385 | ||||||
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.950 | 0.726 | 0.784 | 5.6e-155 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.942 | 0.707 | 0.614 | 4.7e-119 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.937 | 0.686 | 0.571 | 3e-108 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.937 | 0.702 | 0.548 | 4.4e-107 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.945 | 0.704 | 0.539 | 7.5e-105 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.942 | 0.706 | 0.540 | 7.5e-105 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.932 | 0.687 | 0.530 | 5e-99 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.935 | 0.700 | 0.510 | 2.8e-98 | |
| TAIR|locus:2179734 | 507 | AT5G26250 [Arabidopsis thalian | 0.893 | 0.678 | 0.511 | 3.3e-95 | |
| TAIR|locus:2083003 | 507 | STP6 "sugar transporter 6" [Ar | 0.901 | 0.684 | 0.501 | 1.4e-94 |
| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
Identities = 287/366 (78%), Positives = 323/366 (88%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG TD G LKRAHLYE+RITSYF+ AC+V +MGGSLFGYDLGVSGGVTSMDDFLKEF
Sbjct: 1 MAGGALTDEGGLKRAHLYEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEF 60
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP +Y+RKQ HL ETDYCKYDNQ+LTLFTSSLYFAGL+STFGASYVTR GRR SI+VGS
Sbjct: 61 FPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGS 120
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
VSFF+G ++NA A +I ML+LGRIFLG+GIGFGNQAVPLYLSEMAPAKIRG VNQLFQLT
Sbjct: 121 VSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLT 180
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
TC+GILVANLINY TE+IHPWGWRLSLGLATVPA LMF+GGL LPETPNSLVEQGKL++A
Sbjct: 181 TCIGILVANLINYKTEQIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKA 240
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
+ VL KVRGT N++AEF DL++AS+AARA+KNPFRNL ++NRPQLVIGA+G+PAFQQLT
Sbjct: 241 KAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLT 300
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
GMNSILFYAPV+FQSLGFG A+L SS IT AL +AA++SM DKFGRR LEA E
Sbjct: 301 GMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVE 360
Query: 361 MIIYMV 366
M YMV
Sbjct: 361 MFCYMV 366
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
Identities = 226/368 (61%), Positives = 289/368 (78%)
Query: 1 MAGGGFTDAGDLK-RAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKE 59
MAGG F G K RA Y+ ++TSY +IAC+VAA+GGS+FGYD+G+SGGVTSMD+FL+E
Sbjct: 1 MAGGSFGPTGVAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEE 60
Query: 60 FFPKVY-RRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV 118
FF VY ++KQAH E++YCKYDNQ L FTSSLY AGLVST AS +TR+ GRRASI+
Sbjct: 61 FFHTVYEKKKQAH--ESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVC 118
Query: 119 GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQ 178
G +SF IG+ LNA AV+++MLL GRI LG+GIGFGNQAVPLYLSE+AP +RG +N +FQ
Sbjct: 119 GGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQ 178
Query: 179 LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238
L T +GI AN++NYGT+++ PWGWRLSLGLA PA LM +GG FLPETPNSLVE+G +
Sbjct: 179 LATTIGIFTANMVNYGTQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTE 238
Query: 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298
R+VL K+RGT NV+AE D++DAS A +IK+PFRN+ +K++RPQLV+ A+ +P FQ
Sbjct: 239 RGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVM-AICMPMFQI 297
Query: 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358
LTG+NSILFYAPV+FQ++GFG A+LYSS +TG L ++ IS+ VD+ GRRA + G
Sbjct: 298 LTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGG 357
Query: 359 TEMIIYMV 366
+MII V
Sbjct: 358 IQMIICQV 365
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
Identities = 211/369 (57%), Positives = 276/369 (74%)
Query: 1 MAGGGF-TDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKE 59
M GGGF T A ++ +E +IT +I+C++AA GG +FGYD+GVSGGVTSM DFL++
Sbjct: 1 MTGGGFATSANGVE----FEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEK 56
Query: 60 FFPKVYRRKQAHLT-ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV 118
FFP VYR+ A +++YCKYDNQ L LFTSSLY AGL +TF ASY TR+ GRR ++++
Sbjct: 57 FFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLI 116
Query: 119 GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQ 178
V F IG LNA A ++ML+ GRI LG G+GF NQAVPL+LSE+AP +IRG +N LFQ
Sbjct: 117 AGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQ 176
Query: 179 LTTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKL 237
L +GIL ANL+NYGT KI WGWRLSLGLA +PA L+ VG L + ETPNSLVE+G+L
Sbjct: 177 LNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRL 236
Query: 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQ 297
DE + VL ++RGT NV+ EF+DL++AS A+ +K+PFRNL +++NRPQLVI A+ + FQ
Sbjct: 237 DEGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVI-AVALQIFQ 295
Query: 298 QLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEA 357
Q TG+N+I+FYAPV+F +LGFGS A+LYS+V+TG ++ L+S+ VDK GRR LEA
Sbjct: 296 QCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEA 355
Query: 358 GTEMIIYMV 366
G +M V
Sbjct: 356 GVQMFFSQV 364
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
Identities = 199/363 (54%), Positives = 274/363 (75%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F G YE +T++ ++ C+VAAMGG LFGYDLG+SGGVTSM++FL +F
Sbjct: 1 MAGGAFVSEGG-GGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKF 59
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP+V + + +T YCK+DNQ+L LFTSSLY A LV++F AS +TR GR+ S+ +G
Sbjct: 60 FPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGG 119
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
++F IGA+ NA AV++SML++GR+ LG+G+GF NQ+ P+YLSEMAPAKIRGA+N FQ+
Sbjct: 120 LAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMA 179
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
+GILVANLINYGT K+ GWR+SLGLA VPA +M +G LP+TPNS++E+GK +EA
Sbjct: 180 ITIGILVANLINYGTSKMAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEA 239
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300
+++L+K+RG NVD EF DLIDA AA+ ++NP++N+ + K RP L+ + IP FQQ+T
Sbjct: 240 KQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCS-AIPFFQQIT 298
Query: 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360
G+N I+FYAPV+F++LGFG AAL S+VITG+ ++ +S+ VD++GRR FLE G +
Sbjct: 299 GINVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQ 358
Query: 361 MII 363
M I
Sbjct: 359 MFI 361
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 198/367 (53%), Positives = 273/367 (74%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F G + YE +T + ++ C+VAAMGG LFGYDLG+SGGVTSM++FL +F
Sbjct: 1 MAGGAFVSEGG-GGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKF 59
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP+V ++ ET YCK+DNQ+L LFTSSLY A L S+F AS VTR GR+ S+ VG
Sbjct: 60 FPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGG 119
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
V+F IG++ NA A +++ML++GR+ LG+G+GF NQ+ P+YLSEMAPAKIRGA+N FQ+
Sbjct: 120 VAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMA 179
Query: 181 TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEA 240
+GIL+ANLINYGT ++ GWR+SLGLA VPA +M +G LP+TPNS++E+GK ++A
Sbjct: 180 ITIGILIANLINYGTSQMAKNGWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQA 239
Query: 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKK-KNRPQLVIGALGIPAFQQL 299
R++L+K+RG NVD EF DL DA AA+ + NP++N+F++ K RP LV + IP FQQ+
Sbjct: 240 REMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCS-AIPFFQQI 298
Query: 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGT 359
TG+N I+FYAPV+F++LGF A+L S+VITG ++ L+S+ VD++GRR FLE G
Sbjct: 299 TGINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGI 358
Query: 360 EMIIYMV 366
+MI+ +
Sbjct: 359 QMIVSQI 365
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 199/368 (54%), Positives = 278/368 (75%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG F D YE R+T++ +I C+VAAMGG LFGYD+G+SGGV SM+DFL +F
Sbjct: 1 MAGGAFIDESG--HGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKF 58
Query: 61 FPKVYRRKQAHL-TETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVG 119
FP V R+ Q ET+YCKYDN++LTLFTSSLY A L ++F AS +TR GR+ S+++G
Sbjct: 59 FPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIG 118
Query: 120 SVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQL 179
S++F GA+LN A+++ ML++GR+FLG+G+GF NQ+VPLYLSEMAPAKIRGA+N FQL
Sbjct: 119 SLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQL 178
Query: 180 TTCLGILVANLINYGTEKIHPW-GWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238
+GIL AN++NY T K+ GWRLSLGLA VPA +M VG FLP+TPNS++E+G +
Sbjct: 179 AITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKE 238
Query: 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298
+A+++L+K+RGT V+ EF++L +A AA+ +K+P+ N+ + + RPQL IP FQQ
Sbjct: 239 KAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTF-IPFFQQ 297
Query: 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358
LTG+N I+FYAPV+F+++GFG+ A+L S+VITG+ ++ ++S+ VDKFGRRA FL+ G
Sbjct: 298 LTGINVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGG 357
Query: 359 TEMIIYMV 366
+MI+ +
Sbjct: 358 FQMIVTQI 365
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 193/364 (53%), Positives = 262/364 (71%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
M GGF GD ++A Y ++T + L C+VAAMGG +FGYD+G+SGGVTSM FLK F
Sbjct: 1 MPAGGFV-VGDGQKA--YPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRF 57
Query: 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGS 120
FP VYR++Q + YC+YD+ LT+FTSSLY A L+S+ AS VTR GRR S++ G
Sbjct: 58 FPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGG 117
Query: 121 VSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLT 180
+ F GA++N A H+ ML++GRI LG GIGF NQAVPLYLSEMAP K RGA+N FQL+
Sbjct: 118 ILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLS 177
Query: 181 TCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDE 239
+GILVA ++NY KI WGWRLSLG A VPA ++ +G L LP+TPNS++E+G+ +E
Sbjct: 178 ITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEE 237
Query: 240 ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299
A+ L ++RG +V EF DL+ AS +++I++P+RNL ++K RP L + + IP FQQL
Sbjct: 238 AKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVM-IPFFQQL 296
Query: 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGT 359
TG+N I+FYAPV+F ++GF + A+L S+V+TG A L+S+ VD++GRR FLE GT
Sbjct: 297 TGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGT 356
Query: 360 EMII 363
+M+I
Sbjct: 357 QMLI 360
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 188/368 (51%), Positives = 264/368 (71%)
Query: 1 MAGGGFTDAGDLKRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEF 60
MAGG + ++ Y Y++T + C + A GG +FGYDLG+SGGVTSM+ FL+EF
Sbjct: 1 MAGGFVSQTPGVRN---YNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEF 57
Query: 61 FPKVYRR-KQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVG 119
FP VY++ K AH E +YC++D+Q+LTLFTSSLY A LVS+ AS +TR GR+ S+ +G
Sbjct: 58 FPYVYKKMKSAH--ENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLG 115
Query: 120 SVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQL 179
+FFIG+ N A +I+MLL+GRI LG G+GF NQ+VP+YLSEMAP +RGA N FQ+
Sbjct: 116 GFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQV 175
Query: 180 TTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238
GI+VA +INY T ++ GWR+SLGLA VPA ++ +G L LP+TPNSL+E+G +
Sbjct: 176 AIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTE 235
Query: 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298
EA+++L+ +RGT VD EF DLIDAS ++ +K+P++N+ + RPQL++ IP FQQ
Sbjct: 236 EAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCF-IPFFQQ 294
Query: 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358
LTG+N I FYAPV+FQ+LGFGS A+L S+++TGI + +S+ VD+FGRR FL+ G
Sbjct: 295 LTGINVITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGG 354
Query: 359 TEMIIYMV 366
+M++ +
Sbjct: 355 IQMLVSQI 362
|
|
| TAIR|locus:2179734 AT5G26250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
Identities = 177/346 (51%), Positives = 249/346 (71%)
Query: 18 YEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDY 77
++ ++T Y I ++AA+GG +FGYD+G+SGGVT+MDDFLKEFFP VY RK+ H E +Y
Sbjct: 14 FDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKK-HAHENNY 72
Query: 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS 137
CKYDNQ L LFTSSLY A LV++F AS GRR ++ + S+ F IG L A AV+I
Sbjct: 73 CKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGAVNIY 132
Query: 138 MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK 197
ML++GRI LG G+GFGNQAVPL+LSE+APA++RG +N +FQL +GIL+AN++NY T
Sbjct: 133 MLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIVNYFTSS 192
Query: 198 IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEF 257
IHP+GWR++LG A +PA ++ G L + ETP SL+E+ K E ++ L+K+RG +VD E+
Sbjct: 193 IHPYGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKKIRGVEDVDEEY 252
Query: 258 SDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLG 317
++ A + AR +K+P+ L K +RP VIG L + FQQ TG+N+I+FYAPV+FQ++G
Sbjct: 253 ESIVHACDIARQVKDPYTKLMKPASRPPFVIGML-LQFFQQFTGINAIMFYAPVLFQTVG 311
Query: 318 FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMII 363
FG+ AAL S+V+TG ++ + + VDK GRR L++ M+I
Sbjct: 312 FGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLI 357
|
|
| TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 175/349 (50%), Positives = 251/349 (71%)
Query: 15 AHLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTE 74
A +E ++T Y I M+AA+GG +FGYD+G+SGGV++MDDFLKEFFP V+ RK+ H+ E
Sbjct: 10 APAFEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWERKK-HVHE 68
Query: 75 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV 134
+YCKYDNQ L LFTSSLY A LV++F AS GRR ++ S+ F IG L A AV
Sbjct: 69 NNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGVGLTAGAV 128
Query: 135 HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYG 194
++ ML++GR+FLG G+GFGNQAVPL+LSE+APA++RG +N +FQL +GIL+AN++NY
Sbjct: 129 NLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILIANIVNYF 188
Query: 195 TEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVD 254
T +HP+GWR++LG A +PA ++ G L + ETP SL+E+ K +E ++ L K+RG +++
Sbjct: 189 TATVHPYGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKIRGVDDIN 248
Query: 255 AEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 314
E+ ++ A + A +K+P+R L K +RP +IG L + FQQ TG+N+I+FYAPV+FQ
Sbjct: 249 DEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGML-LQLFQQFTGINAIMFYAPVLFQ 307
Query: 315 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMII 363
++GFGS AAL S+VITG +A + + VD+ GRR L++ M+I
Sbjct: 308 TVGFGSDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSVHMLI 356
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GW61 | STP14_ARATH | No assigned EC number | 0.7798 | 0.9558 | 0.7301 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 385 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-80 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 6e-65 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-38 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 6e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-13 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 6e-10 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-09 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 7e-08 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 6e-06 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 3e-05 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 6e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-04 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 0.001 | |
| PRK10473 | 392 | PRK10473, PRK10473, multidrug efflux system protei | 0.002 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 254 bits (650), Expect = 1e-80
Identities = 125/341 (36%), Positives = 185/341 (54%), Gaps = 15/341 (4%)
Query: 30 CMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFT 89
+VAA+GG LFGYD GV G ++ F K F C + L
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTS---------IGACAASTVLSGLIV 52
Query: 90 SSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLG 147
S L+ + A + GR+ S+++G+V F IGA+L A ML++GR+ +G
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 148 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH-PWGWRLS 206
+G+G + VP+Y+SE+AP K+RGA+ L+QL GILVA +I G K GWR+
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 207 LGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNA 266
LGL VPA L+ +G LFLPE+P LV +GKL+EAR VL K+RG ++VD E + D+
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLER 232
Query: 267 ARAIKNPFRN-LFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALY 325
+ + LF+ K Q ++ + + FQQLTG+N+I +Y+P IF++LG
Sbjct: 233 SVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL--L 290
Query: 326 SSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMV 366
++I G+ + I++ VD+FGRR L M I +
Sbjct: 291 VTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFL 331
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 214 bits (546), Expect = 6e-65
Identities = 118/360 (32%), Positives = 188/360 (52%), Gaps = 27/360 (7%)
Query: 20 YRITSYFLIA-CMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYC 78
T + + ++AA+GG +FGYD GV GG ++ F +F + L
Sbjct: 19 LGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWG---- 74
Query: 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC---AVH 135
L S G + A +++ GR+ S+++ ++ F IGAIL A+
Sbjct: 75 --------LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALS 126
Query: 136 ISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGT 195
+ ML++GR+ LG+G+G + VP+YLSE+AP +RGA+ L+QL GILVA G
Sbjct: 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK 186
Query: 196 EKIHPW--GWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANV 253
GWR+ LGL +PA L+F+G FLPE+P LV +G+++EARK L ++RGT+
Sbjct: 187 -VSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGE 245
Query: 254 DAEFSDLIDASNAARAIKNPFRNL-------FKKKNRPQLVIGALGIPAFQQLTGMNSIL 306
D E D ++ + R+I+ ++ R +L +G + + FQQ TG+N+I+
Sbjct: 246 DKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVV-LQWFQQFTGINAIM 304
Query: 307 FYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMV 366
+Y+P IF++ G + A S+I G +++ VD+FGRR L M I +
Sbjct: 305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF 364
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 2e-38
Identities = 109/406 (26%), Positives = 175/406 (43%), Gaps = 64/406 (15%)
Query: 13 KRAHLYEYRITSYFLIACMVAAMGGSLFGYDLGV-SGGVTSMDDFLKEFFPKVYRRKQAH 71
+ Y + IT +VA +GG LFGYD V SG V S++ P+ +
Sbjct: 4 QYNSSYIFSIT-------LVATLGGLLFGYDTAVISGTVESLNTVFVA--PQ-------N 47
Query: 72 LTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA 131
L+E+ N +L +S ++ Y + GRR S+ + +V FFI A+ +A
Sbjct: 48 LSES----AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSA 103
Query: 132 C------------AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQL 179
++ ++ RI G+G+G + P+Y++E+APA IRG + Q
Sbjct: 104 WPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQF 163
Query: 180 TTCLGILVANLINYGTEK--IHPW----GWRLSLGLATVPATLMFVGGLFLPETPNSLVE 233
G LV +NY + W GWR +PA L + F+PETP L+
Sbjct: 164 AIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMS 223
Query: 234 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGI 293
+GK ++A +L K+ G ++ + + R K L+ G I
Sbjct: 224 RGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGR-----------KTGGKLLMFGVGVI 272
Query: 294 ------PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDK 347
FQQ G+N +L+YAP IF++LG + AL ++I G+ ++++ VDK
Sbjct: 273 VIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK 332
Query: 348 FGRRAFFLEAGTEMIIYMV---TTLHSNMIQIHS-----FSSAFFM 385
FGR+ + M I M T ++ I + F A F
Sbjct: 333 FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA 378
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-14
Identities = 71/305 (23%), Positives = 131/305 (42%), Gaps = 27/305 (8%)
Query: 73 TETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC 132
TE D D + L S + L+ +F Y++ GR+ +++ ++ + +L A
Sbjct: 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF 176
Query: 133 AVHISMLLLGRIFLGMGI-GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI 191
+ + ++ L+ R+ +GMGI G QAV L E P K R V L Q+ LG+++ L+
Sbjct: 177 SPNYTVFLVFRLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLV 235
Query: 192 NYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGT- 250
Y WR ++P L F+ F+PE+P L+ QG+++EA K+L+++
Sbjct: 236 AYFIP-----DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKIN 290
Query: 251 -ANVDAEFSDLIDASNAARAIKNPF--RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILF 307
+ AE L + + + K R + + + +
Sbjct: 291 GKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT-------TAFSY 343
Query: 308 YAPVIFQSLGFGSGAALY-SSVITGIALCIAALISMAFVDKFGRR-----AFFLEAGTEM 361
Y V+ G+ +Y I+G+ A LI++ +D+ GRR + L +
Sbjct: 344 YGLVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALL 400
Query: 362 IIYMV 366
++ V
Sbjct: 401 LLLFV 405
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISML 139
L S+ + + A Y++ GRR +++G + F +G++L A A + +L
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90
Query: 140 LLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH 199
L+GR LG+G G A ++E P K RG LF LG L+ L+
Sbjct: 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL--AE 148
Query: 200 PWGWRLSLGLATVPATLMFVGGLFLP 225
GWR + + L+ + LFL
Sbjct: 149 SLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 6e-10
Identities = 58/264 (21%), Positives = 96/264 (36%), Gaps = 20/264 (7%)
Query: 111 GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR 170
GRR ++ + F + +L A A +++ LL+ R G+G+G + +SE AP + R
Sbjct: 80 GRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFR 139
Query: 171 GAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATV-PATLMFVGGLFLPETPN 229
G L +G V + I +GWR + + P L+ + FLPE+ +
Sbjct: 140 GTAVGLMFCGYPIGAAVGGFL--AGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID 197
Query: 230 SLVEQGKLDEARKVLE-KVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVI 288
LV + R V + A + + R+ F+ LF+ K
Sbjct: 198 FLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRS---VFKALFQGKT------ 248
Query: 289 GALGIPAFQQLTGMNSILFYA-----PVIFQSLGFGSGAALYSSVITGIALCIAALISMA 343
A L M + Y P + LGF A + I ++I
Sbjct: 249 -ARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGW 307
Query: 344 FVDKFGRRA-FFLEAGTEMIIYMV 366
D+ G R L + +V
Sbjct: 308 LADRLGPRVTALLLLLGAVFAVLV 331
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 56/273 (20%), Positives = 97/273 (35%), Gaps = 35/273 (12%)
Query: 84 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGR 143
+ L ++ ++ A ++ GRR +++G + F +G +L A + +LL+ R
Sbjct: 33 EIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLR 92
Query: 144 IFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGW 203
+ G+G G A +++ P + RG L LG + L+ G +GW
Sbjct: 93 VLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL--GGLLASLFGW 150
Query: 204 RLSLGLATVPATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLID 262
R + + + A L V L LP P +EA L
Sbjct: 151 RAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLV----------------- 193
Query: 263 ASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGA 322
P L + L++ L ++L Y P+ + LG +
Sbjct: 194 ----------PAWKLLLRDPVLWLLLALLLFGF-----AFFALLTYLPLYQEVLGLSALL 238
Query: 323 ALYSSVITGIALCIAALISMAFVDKFGRRAFFL 355
A + G+ I L+ D+ GRR L
Sbjct: 239 AGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLL 271
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 7e-08
Identities = 69/318 (21%), Positives = 113/318 (35%), Gaps = 71/318 (22%)
Query: 99 STFGASYVTR------------SRGRRASIMV-----GSVSFFIGAILNACAVHIS---M 138
+TF A ++ R GR+ ++++ G + IG + + + I +
Sbjct: 39 ATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPIL 98
Query: 139 LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY----- 193
LLL R+ G +G LYL+E AP RG Q+ +G+L+A L
Sbjct: 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL 158
Query: 194 -GTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTAN 252
G + + WGWR+ ++ V + L ETP Q K + R
Sbjct: 159 LGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRG---------- 208
Query: 253 VDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 312
P K +P L+ L I + FY
Sbjct: 209 --------------------PIAETLTKHRKPFLLGLGLVI--------ATTTTFYLITT 240
Query: 313 F------QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMV 366
+ Q+LG + +AL +++ I I +S A D+ GRR + + V
Sbjct: 241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAV 300
Query: 367 TTLHSNMIQIHSFSSAFF 384
L ++ SF+ FF
Sbjct: 301 PLL-MALLDSGSFTLFFF 317
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-06
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 111 GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR 170
GR+ ++VG F + + A + +I++L++ R G G F A ++++ P + R
Sbjct: 26 GRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER 85
Query: 171 GAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF-LPET 227
G L LG L+ + G GWR + A F+ F LPET
Sbjct: 86 GVALGLMSAGIALGPLLGPPL--GGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 18/191 (9%)
Query: 74 ETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVG-SVSFFIGAILNAC 132
E D C D+ + +Y +V F + GR+ +++ SV+ F A ++
Sbjct: 194 EKDLCIPDSGK-GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFF-AFFSSF 251
Query: 133 AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN 192
L R+ G GIG V Y +E + RG + +G + A +
Sbjct: 252 VQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311
Query: 193 YGTEKIHPWGWRLSLGLA-------------TVPATLMFVGGLFLPETPNSLVEQGKLDE 239
+ I +GW +G A P F+PE+P +E GK DE
Sbjct: 312 WAI--IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDE 369
Query: 240 ARKVLEKVRGT 250
A +L+ + T
Sbjct: 370 AWMILKLIHDT 380
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 42/246 (17%), Positives = 73/246 (29%), Gaps = 21/246 (8%)
Query: 111 GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR 170
GRR ++ V F G + A + + R+ +G+G+G + Y+ E P +R
Sbjct: 75 GRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLR 134
Query: 171 GAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNS 230
+ L +G +VA + + GWR ++ +P +PE
Sbjct: 135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA--- 191
Query: 231 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGA 290
E K A K L + + + I N L +
Sbjct: 192 --EDWKEKHAGKALVR-----------TMVDILYGGEHRIANIVMTLAAAMVQSAGKRWP 238
Query: 291 LGIPAFQQLTGMN-----SILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFV 345
+ + N + LG V + I + +
Sbjct: 239 TFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLG 298
Query: 346 DKFGRR 351
D GRR
Sbjct: 299 DWLGRR 304
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 3/147 (2%)
Query: 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV-GSVSFFIGAILNACAVHISM 138
L S G++ ++ GRR +++ G + +G +L A A +++
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 139 LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI 198
LL+ + LG G+GF A+ SE+AP + RG + LF LG + L+ +
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL--AGLLL 325
Query: 199 HPWGWRLSLGLATVPATLMFVGGLFLP 225
G+ + A L + L LP
Sbjct: 326 DTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 4/148 (2%)
Query: 96 GLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 155
GL + + R G S+ + + G ++ + + +L LG + G GI N
Sbjct: 61 GLFAPAAPR-LARRFGEERSLFLALLLIAAGILIRS-LGGLPLLFLGTLLAGAGIAVINV 118
Query: 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPAT 215
+P + P ++ G + L+ + G +A + + H GWR +LG + A
Sbjct: 119 LLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQ-HSGGWRGALGFWALLAL 176
Query: 216 LMFVGGLFLPETPNSLVEQGKLDEARKV 243
L + L + KL RKV
Sbjct: 177 LALLIWLPQALREQAASIATKLVSVRKV 204
|
Length = 395 |
| >gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 91 SLYFAGLVST--FGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGM 148
S+Y AG+ + F RS GR+ + G+ F I ++L + A S+ L GR G+
Sbjct: 45 SVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103
Query: 149 GIGF 152
G G
Sbjct: 104 GAGC 107
|
Length = 392 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 105 YVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLGMGIG--FGN 154
+ GR+ S+++ G+++ AC +LLL R+F G+ +G +G
Sbjct: 85 RIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGT 144
Query: 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLG-----ILVANLINY--GTEKIHPWGWRLSL 207
A Y+SE+A +G FQ T +G +LV ++ ++ WGWR+
Sbjct: 145 SAT--YMSEVAVEGRKGFYAS-FQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPF 201
Query: 208 GLATVPA 214
L V A
Sbjct: 202 ALGAVLA 208
|
Length = 432 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 385 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.97 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.96 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.95 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.95 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.95 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.95 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.95 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.95 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.95 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.95 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.95 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.94 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.94 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.94 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.94 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.94 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.94 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.94 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.94 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.94 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.93 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.93 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.93 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.93 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.93 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.93 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.93 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.92 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.92 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.92 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.91 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.91 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.91 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.9 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.9 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.9 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.88 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.88 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.87 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.87 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.87 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.87 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.86 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.85 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.85 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.85 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.84 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.84 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.83 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.83 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.83 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.8 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.8 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.77 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.76 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.73 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.72 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.69 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.69 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.65 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.65 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.64 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.64 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.62 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.61 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.61 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.6 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.59 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.57 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.56 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.56 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.56 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.55 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.54 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.53 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.51 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.49 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.48 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.48 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.47 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.45 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.45 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.44 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.44 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.43 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.42 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.4 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.4 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.37 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.36 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.35 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.34 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.34 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.34 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.34 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.33 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.32 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.31 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.29 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.28 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.28 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.28 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.27 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.27 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.27 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.24 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.24 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.23 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.22 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.18 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.18 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.17 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.16 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.15 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.15 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.14 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.13 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.12 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.12 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.12 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.12 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.11 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.1 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.09 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.09 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.08 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.07 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.07 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.06 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.04 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.03 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.01 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.99 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.98 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.97 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.95 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.93 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.93 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.91 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.91 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.9 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.88 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.88 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.88 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.88 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.87 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.87 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.87 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.86 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.86 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.82 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.79 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.78 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.76 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.75 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.75 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.73 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.73 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.72 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.71 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.71 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.69 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.66 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.65 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.62 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.62 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.61 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.6 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.6 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.52 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.44 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.43 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.42 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.42 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.4 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.38 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.36 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.36 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.32 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.3 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.27 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.24 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.24 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.21 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.21 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.95 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.93 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 97.91 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.87 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.85 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.81 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.8 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.79 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.67 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.67 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.64 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.56 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.54 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.45 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.45 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.42 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.21 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.11 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.01 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.01 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.99 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.99 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 96.87 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.74 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 96.69 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 96.69 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 96.67 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.48 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.4 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.24 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.21 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 96.11 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 95.66 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 94.93 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 93.91 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.69 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 93.31 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 92.61 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 92.54 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 91.97 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 89.16 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 88.64 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 88.23 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 88.19 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 87.56 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 87.02 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 83.93 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 82.47 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=276.09 Aligned_cols=350 Identities=26% Similarity=0.495 Sum_probs=294.2
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhH
Q 016673 20 YRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVS 99 (385)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 99 (385)
++++++....+..+.++.+-+||+.+.+|+. .+..++|.++...+.......++ .-....+.+.+++.+|.++|
T Consensus 3 ~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~~s~~---~~~~lwS~~vs~f~iG~~~G 76 (485)
T KOG0569|consen 3 PKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLPLSDS---TLDLLWSLIVSIFFIGGMIG 76 (485)
T ss_pred CCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCCCChH---HHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888889999999998765 57788887666555442111111 12335678889999999999
Q ss_pred hhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHH
Q 016673 100 TFGASYVTRSRGRRASIMVGSVSFFIGAILNAC---AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQL 176 (385)
Q Consensus 100 ~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 176 (385)
++..|+++||+|||..++++.++..++.+...+ .+++.+++++|++.|+..|......+.++.|..|++.||....+
T Consensus 77 s~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~ 156 (485)
T KOG0569|consen 77 SFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTL 156 (485)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHH
Confidence 999999999999999999999999888887766 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHh-cCCHHHHHHHHHHHhCCCchhH
Q 016673 177 FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVE-QGKLDEARKVLEKVRGTANVDA 255 (385)
Q Consensus 177 ~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 255 (385)
.+.+..+|.+++..++.-....++..|++.+....+++++.++...++||||+|+.. +++.++|++.++++++.++.+.
T Consensus 157 ~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~ 236 (485)
T KOG0569|consen 157 LQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEA 236 (485)
T ss_pred HHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchh
Confidence 999999999999988654444455679999999999999999999999999999987 8999999999999999886665
Q ss_pred HHHHHHHHHHHHH---HhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHH
Q 016673 256 EFSDLIDASNAAR---AIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGI 332 (385)
Q Consensus 256 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 332 (385)
+.++..++.+.++ +++.+++++++++..++.....+.+....++.+.+...+|...++++.|++..++.+.....++
T Consensus 237 ~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~ 316 (485)
T KOG0569|consen 237 EIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGI 316 (485)
T ss_pred HHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5555444333332 2456789999887666655555548889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHhhhc
Q 016673 333 ALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSNMIQ 375 (385)
Q Consensus 333 ~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 375 (385)
..++.++++.++.||+|||++++.+..++.+..+++.......
T Consensus 317 v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~ 359 (485)
T KOG0569|consen 317 VNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLS 359 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888765543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=265.51 Aligned_cols=333 Identities=28% Similarity=0.490 Sum_probs=250.8
Q ss_pred hhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhh
Q 016673 22 ITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTF 101 (385)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 101 (385)
..+.....++++.++.+.++||...+++.. |.+.+.|.+... ++.+.++.+.+++.+++.++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------~~~~~~~~~~~~~~s~~~ig~~~~~~ 73 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAPQN----------LSESAANSLLGFCVASALIGCIIGGA 73 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHhH--HHHHHHhccccc----------ccccCChhHHHHHHHHHHHHHHHHHH
Confidence 344566677778889999999999988764 667777754332 22357899999999999999999999
Q ss_pred hhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCcc
Q 016673 102 GASYVTRSRGRRASIMVGSVSFFIGAILNACA------------VHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKI 169 (385)
Q Consensus 102 ~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 169 (385)
++|+++||+|||++++++.++..++.+.++++ ++++.++++|+++|++.|...+...++++|++|+++
T Consensus 74 ~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~ 153 (479)
T PRK10077 74 LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI 153 (479)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh
Confidence 99999999999999999999999998888763 235678899999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccc------cCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHH
Q 016673 170 RGAVNQLFQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKV 243 (385)
Q Consensus 170 r~~~~~~~~~~~~~g~~i~~~~~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 243 (385)
|++++++.+.+..+|..+++.++..... ..+.+||+.|++.+++.++..+..+++||+|+++.++++.+++.+.
T Consensus 154 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 233 (479)
T PRK10077 154 RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGI 233 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHH
Confidence 9999999999999999999887644321 2346899999998888777766667789999998888888877766
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCCCCchH
Q 016673 244 LEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAA 323 (385)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 323 (385)
.++..+..+.....++..+..+.+ +...+..+. ..............+.+..+++...++.|.+.++.|.+....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~ 308 (479)
T PRK10077 234 LRKIMGNTLATQALQEIKHSLDHG---RKTGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIA 308 (479)
T ss_pred HHHHcCChhHHHHHHHHHHHHHHh---hhhhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchH
Confidence 666554433222222211111100 101111111 011111111112344445556667788899988899988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 324 LYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
.......++..+++.++.++++||+|||+.++.+.++.+++.+++...
T Consensus 309 ~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~ 356 (479)
T PRK10077 309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 356 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999999999888888777654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=273.15 Aligned_cols=328 Identities=17% Similarity=0.204 Sum_probs=254.5
Q ss_pred hHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhh
Q 016673 23 TSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFG 102 (385)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 102 (385)
.+++|.++++++++.+..+++...++.+. |.+.+++ +++..+.+++.+++.++.++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~il--p~i~~~~------------------gls~~~~g~l~s~~~lG~iiG~li 221 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVL--PSAEKDL------------------CIPDSGKGMLGLIVYLGMMVGAFF 221 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888899999988776653 4444444 478899999999999999999999
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHH
Q 016673 103 ASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTC 182 (385)
Q Consensus 103 ~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 182 (385)
+|+++||+|||+++++++++.++++++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.+++..+++.
T Consensus 222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~ 301 (742)
T TIGR01299 222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM 301 (742)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc-----------cCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHHHHhCCC
Q 016673 183 LGILVANLINYGTEK-----------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTA 251 (385)
Q Consensus 183 ~g~~i~~~~~~~~~~-----------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (385)
+|.++++.++..... ....+||+.+++.++++++.++..+++||+|+|+..+++.+++.+.++++...+
T Consensus 302 iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 302 IGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred HHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 999999987644321 112479999999888888877777889999999999999999999998887654
Q ss_pred chh-----HH--HHHHHHHHHHH------HH------------------hcCChhhhhccCCcchHHHHHhHHHHHHHcc
Q 016673 252 NVD-----AE--FSDLIDASNAA------RA------------------IKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300 (385)
Q Consensus 252 ~~~-----~~--~~~~~~~~~~~------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (385)
... .. .++.+...... +. ...+++++++.+.++++++..+ .+++...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~--~wf~~~~ 459 (742)
T TIGR01299 382 MRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMG--VWFTLSF 459 (742)
T ss_pred CCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHH--HHHHHHH
Confidence 211 00 00111100000 00 0013455666666555555444 5677777
Q ss_pred chHHHHHhHHHHHHhc------------------------------------------CC-----C--------------
Q 016673 301 GMNSILFYAPVIFQSL------------------------------------------GF-----G-------------- 319 (385)
Q Consensus 301 ~~~~~~~~~~~~~~~~------------------------------------------g~-----s-------------- 319 (385)
.++.+..|+|.++++. |+ +
T Consensus 460 ~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (742)
T TIGR01299 460 GYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDV 539 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeec
Confidence 8899999999875431 00 0
Q ss_pred --------------------------------------------------C----chHHHHHHHHHHHHHHHHHHHHHhh
Q 016673 320 --------------------------------------------------S----GAALYSSVITGIALCIAALISMAFV 345 (385)
Q Consensus 320 --------------------------------------------------~----~~~~~~~~~~~~~~~~~~~~~g~l~ 345 (385)
. ........+.+++.+++.+++++++
T Consensus 540 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~ 619 (742)
T TIGR01299 540 TSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLM 619 (742)
T ss_pred cccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0123445666789999999999999
Q ss_pred ccccchhHHHHhhHHHHHHHHHHHHHh
Q 016673 346 DKFGRRAFFLEAGTEMIIYMVTTLHSN 372 (385)
Q Consensus 346 d~~~~r~~~~~~~~~~~~~~~~~~~~~ 372 (385)
||+|||++++++.++.+++.++++...
T Consensus 620 Dr~GRr~~l~~~~~lsai~~ll~~~~~ 646 (742)
T TIGR01299 620 DKIGRLRMLAGSMVLSCISCFFLSFGN 646 (742)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999888888877766543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=264.82 Aligned_cols=340 Identities=38% Similarity=0.648 Sum_probs=273.5
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCc--hHHHHHHHHHHHHHH
Q 016673 20 YRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDN--QVLTLFTSSLYFAGL 97 (385)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~l~~~ 97 (385)
.+.........+...++.+..+++ +..+.........+++......+ .+. ++.+|+.+...++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~~~~------------~~~~~~~~s~~~s~~~lga~ 103 (513)
T KOG0254|consen 37 TMISPFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLYDLS------------TGEYSVRQGLLTSILNLGAL 103 (513)
T ss_pred ccCceehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhcccccccc------------cchhHHHHHHHHHHHHHHHH
Confidence 344556777888888899999998 43333333334444332111111 112 567999999999999
Q ss_pred hHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHH
Q 016673 98 VSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLF 177 (385)
Q Consensus 98 ~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 177 (385)
++++++|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|......+.+++|..|++.||...+..
T Consensus 104 ~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~ 183 (513)
T KOG0254|consen 104 VGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLY 183 (513)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHHHHhC--CCchhH
Q 016673 178 QLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRG--TANVDA 255 (385)
Q Consensus 178 ~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 255 (385)
+....+|..++..++...... +++||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++.+ ..+.+.
T Consensus 184 ~l~~~~Gi~~~~~~~~~~~~~-~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~ 262 (513)
T KOG0254|consen 184 QLFITIGILLGYCINYGTSKV-YAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEV 262 (513)
T ss_pred HHHHHHHHHHHHHHhhhhccC-CccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHH
Confidence 999999999997776555443 25899999999999998888888899999999999999999999999988 344444
Q ss_pred HHHHHHHHHHHHH--Hhc-CChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHH
Q 016673 256 EFSDLIDASNAAR--AIK-NPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGI 332 (385)
Q Consensus 256 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 332 (385)
+.++.+.....+. ..+ ..+.+++++..+++..+.+. +..+.+.+++....+|.+.+++..|.+... .......++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~-l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~ 340 (513)
T KOG0254|consen 263 ELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLL-LQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGV 340 (513)
T ss_pred HHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHH-HHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHH
Confidence 4444442211111 112 23666777556666666666 888999999999999999999998877554 666777788
Q ss_pred HHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHhhhc
Q 016673 333 ALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSNMIQ 375 (385)
Q Consensus 333 ~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 375 (385)
..+++..++..+.||+|||++++.+...+.++.++++......
T Consensus 341 v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~ 383 (513)
T KOG0254|consen 341 VNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFA 383 (513)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999876543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=268.97 Aligned_cols=336 Identities=19% Similarity=0.207 Sum_probs=240.7
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHh
Q 016673 19 EYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLV 98 (385)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~ 98 (385)
+.+..++++..++++.++.+.++||...++.+. |.+.+++. .++.+.+..+.+++.+.+.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ig~~i 71 (502)
T TIGR00887 7 TAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVT--KMLGYVYY-------------HGKGPLPSSVSAAVNGSASIGTLA 71 (502)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc-------------cCcccchHHHHHHHHHHHHHHHHH
Confidence 345567788888899999999999999988764 22222211 001234667789999999999999
Q ss_pred HhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchh
Q 016673 99 STFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVH------ISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 172 (385)
Q Consensus 99 ~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 172 (385)
++++.|+++||+|||+++.++.++..++.++++++++ ++.++++|+++|++.|...+....++.|++|+++|++
T Consensus 72 g~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~ 151 (502)
T TIGR00887 72 GQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGA 151 (502)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999888765 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---------------------cCCcchhHHHhhhHHHHHHHHHhhcccccchhHH
Q 016673 173 VNQLFQLTTCLGILVANLINYGTEK---------------------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSL 231 (385)
Q Consensus 173 ~~~~~~~~~~~g~~i~~~~~~~~~~---------------------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~ 231 (385)
++++.+....+|..+++.++..... ..+++||+.+.+.++++++..+..+++||+|+|+
T Consensus 152 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l 231 (502)
T TIGR00887 152 MMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYT 231 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999888643221 1124799999998888888777778899999999
Q ss_pred HhcCCHH-HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcc---hHHHHHhHHHHHHHccchHHHHH
Q 016673 232 VEQGKLD-EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRP---QLVIGALGIPAFQQLTGMNSILF 307 (385)
Q Consensus 232 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 307 (385)
..+++.+ ++.+.+.+....+..++ .++.++.++++++.+.+++++++.+..+ +..+... ...+.....++....
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~y~~~~ 309 (502)
T TIGR00887 232 ADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTA-GSWFLLDIAFYGVNL 309 (502)
T ss_pred HHhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHcccc
Confidence 8877764 45655555543221110 0111111011111123566776532211 2222212 223333334455666
Q ss_pred hHHHHHHhcCCCCchHHH------------HHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 308 YAPVIFQSLGFGSGAALY------------SSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 308 ~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
+.|.++++.|++..+++. ......++.+++.+++++++||+|||+.++.+..+.+++..++...
T Consensus 310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~ 385 (502)
T TIGR00887 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA 385 (502)
T ss_pred ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 789999888887543221 2333455677788999999999999999888887777766666543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=252.63 Aligned_cols=337 Identities=35% Similarity=0.640 Sum_probs=246.0
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhH
Q 016673 20 YRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVS 99 (385)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 99 (385)
.+..++.+..++++.++.+..+++...++... |...+++. .+++++-+.+..+.+++.+++.++..++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 87 (481)
T TIGR00879 20 GSTYWKVALLSLIAAIGGLMFGYDTGVIGGAL--ALPAFEFK----------FTSANSDSYSSSLWGLVVSIFLVGGFIG 87 (481)
T ss_pred CcccHHHHHHHHHHHHHHHhcccccchhhhhh--hcHHHHHh----------cCCcccCCCChhHHHHHHHHHHHHHHHH
Confidence 34446666667777778888899998877664 33333321 1111111357899999999999999999
Q ss_pred hhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHH
Q 016673 100 TFGASYVTRSRGRRASIMVGSVSFFIGAILNACA---VHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQL 176 (385)
Q Consensus 100 ~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 176 (385)
++++|+++||+|||++++++.++..++.+++.+. .+++.++++|+++|++.+...+....++.|++|+++|++++++
T Consensus 88 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 167 (481)
T TIGR00879 88 ALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSL 167 (481)
T ss_pred HHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhH
Confidence 9999999999999999999999999999998654 3456899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHHHHhCCCchhH
Q 016673 177 FQLTTCLGILVANLIN-YGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDA 255 (385)
Q Consensus 177 ~~~~~~~g~~i~~~~~-~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (385)
.+.+..+|..+++.++ .........+||+.|++.++..++..+..+++||+|++...+++.++..+...+....++.+.
T Consensus 168 ~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (481)
T TIGR00879 168 YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDK 247 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcH
Confidence 9999999999999996 113333456899999997777766666667789999887777776666555554433322111
Q ss_pred HHHH-HH---HHHH-HHHHhcCChhhhhccCC--cchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCCCCchHHHHHH
Q 016673 256 EFSD-LI---DASN-AARAIKNPFRNLFKKKN--RPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSV 328 (385)
Q Consensus 256 ~~~~-~~---~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 328 (385)
+... .. .... +.+..+..+.+.++... .++...... ...+...........+.|.+.++.|++..+.+....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 326 (481)
T TIGR00879 248 ELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVV-LQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSI 326 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHH-HHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHH
Confidence 1111 00 0000 11111222334433221 233333333 445555555566778889998889999988889999
Q ss_pred HHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHH
Q 016673 329 ITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTL 369 (385)
Q Consensus 329 ~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 369 (385)
...++.+++.++.+++.||++||+.+..+.++.+++.+++.
T Consensus 327 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (481)
T TIGR00879 327 IVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG 367 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888777777766665
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=250.77 Aligned_cols=293 Identities=19% Similarity=0.289 Sum_probs=213.8
Q ss_pred HHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCc--hHHHH--HHHHHHHHHHhHhhhh
Q 016673 28 IACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDN--QVLTL--FTSSLYFAGLVSTFGA 103 (385)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~s~~~l~~~~~~~~~ 103 (385)
...+.+.++.++++||..+++.+. |.+.++|.|.. ++ +..+. ..++.++++.+++++.
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~--~~i~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~~ig~~~~ 77 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVA--YALGKVFFPGA----------------DPSVQMIAALATFSVPFLIRPLGGLFF 77 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCCC----------------CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666788999999999987664 55666664321 11 11222 2578889999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHH
Q 016673 104 SYVTRSRGRRASIMVGSVSFFIGAILNACAVHISM--------LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQ 175 (385)
Q Consensus 104 g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~--------~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 175 (385)
|+++||+|||+++.+++++++++++++++++|+++ ++++|+++|++.|+..+...+++.|++|+++|+++.+
T Consensus 78 G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~ 157 (490)
T PRK10642 78 GMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGS 157 (490)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHH
Confidence 99999999999999999999999999999999875 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccc------cCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHHHHhC
Q 016673 176 LFQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRG 249 (385)
Q Consensus 176 ~~~~~~~~g~~i~~~~~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 249 (385)
+...+..+|..+++.+...... ..++|||+.|++.+++.++..++...+||+|++...+++.++..+
T Consensus 158 ~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~------- 230 (490)
T PRK10642 158 WLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR------- 230 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-------
Confidence 9998888888888766432211 235799999999877666655555678999986543222111000
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHH
Q 016673 250 TANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSV 328 (385)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~ 328 (385)
+...++.+.++++++++. ++... ... ...+.....++....+.|.++++ +|++..+......
T Consensus 231 --------------~~~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~ 293 (490)
T PRK10642 231 --------------EGLQDGPKVSFKEIATKH-WRSLL-TCI-GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIII 293 (490)
T ss_pred --------------ccccccccCCHHHHHHHh-HHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 000001123455555432 22222 222 22233345566777889999866 7998888787778
Q ss_pred HHHHHHHHHHHHHHHhhccccchhHHHHhhHHHH
Q 016673 329 ITGIALCIAALISMAFVDKFGRRAFFLEAGTEMI 362 (385)
Q Consensus 329 ~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~ 362 (385)
...++.+++.++.|+++||+|||+.+..+.+...
T Consensus 294 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 327 (490)
T PRK10642 294 AIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALF 327 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8888899999999999999999998877765433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=244.27 Aligned_cols=288 Identities=20% Similarity=0.244 Sum_probs=209.9
Q ss_pred chhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCch---HHHHHHHHHHHHHH
Q 016673 21 RITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQ---VLTLFTSSLYFAGL 97 (385)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~l~~~ 97 (385)
.++++++..+..++++.+++++|...++.+. |.+.++++|. +.+.. +.+...+..+++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 77 (432)
T PRK10406 15 SDTRRRIWAIVGASSGNLVEWFDFYVYSFCS--LYFAHIFFPS---------------GNTTTQLLQTAGVFAAGFLMRP 77 (432)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCC---------------CCchHHHHHHHHHHHHHHHHHH
Confidence 3444555566677788899999999987664 5666666542 11233 33444455566667
Q ss_pred hHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhhhhhhHHhhhcCCCcc
Q 016673 98 VSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKI 169 (385)
Q Consensus 98 ~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 169 (385)
++++++|+++||+|||+++..+.++++++++++++++++. .++++|+++|++.|..++...+++.|++|+++
T Consensus 78 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999988764 58899999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccc------cCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHH
Q 016673 170 RGAVNQLFQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKV 243 (385)
Q Consensus 170 r~~~~~~~~~~~~~g~~i~~~~~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 243 (385)
|+++.++.+.+...|..+++.+...... ...+|||+.|++.+++.++........||+|++..+
T Consensus 158 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~---------- 227 (432)
T PRK10406 158 KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR---------- 227 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh----------
Confidence 9999999998888888888776433221 124699999999888777665555557777642100
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCch
Q 016673 244 LEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGA 322 (385)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~ 322 (385)
+++++.+++++++++. .+.... ...+.....++....|.|.++++ .|++..+
T Consensus 228 -----------------------~~~~~~~~~~l~~~~~---~~~~~~-~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~ 280 (432)
T PRK10406 228 -----------------------ALKEAGSLKGLWRNRR---AFIMVL-GFTAAGSLCFYTFTTYMQKYLVNTAGMHANV 280 (432)
T ss_pred -----------------------hhcccccHHHHHhhHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 0001223555554322 222221 12222234455677788998876 8999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHH
Q 016673 323 ALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMI 362 (385)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~ 362 (385)
.+.......+...++..+.|+++||++||+.+..+..+.+
T Consensus 281 ~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~ 320 (432)
T PRK10406 281 ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAA 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 8888888888888889999999999999988776655443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=234.45 Aligned_cols=288 Identities=19% Similarity=0.265 Sum_probs=226.1
Q ss_pred HHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhh
Q 016673 26 FLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASY 105 (385)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~ 105 (385)
.+..++...++.|..+.+..+.... +|++.+++ ++|..+.|+..+.|.++..++.++...
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gL--Lp~iA~dl------------------~vs~~~aG~lis~yAl~~ai~ap~l~~ 70 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGL--LPPIAADL------------------GVSEGAAGQLITAYALGVALGAPLLAL 70 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhc--hHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777666555 35666665 589999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHH
Q 016673 106 VTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGI 185 (385)
Q Consensus 106 l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 185 (385)
+.||+.||++++..+.++.++.+++++++||+.++++|++.|++.|..++...++..+..|+++|++++++...+..++.
T Consensus 71 lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~ 150 (394)
T COG2814 71 LTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT 150 (394)
T ss_pred HHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 016673 186 LVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDAS 264 (385)
Q Consensus 186 ~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (385)
++|.+++. ...+.+|||+.|++.+.++++..+.. ..+| |+.. +
T Consensus 151 v~GvPLGt--~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~--~------------------------------ 194 (394)
T COG2814 151 VLGVPLGT--FLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI--S------------------------------ 194 (394)
T ss_pred HHhccHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC--C------------------------------
Confidence 99999954 44456799999999999998887665 4577 2100 0
Q ss_pred HHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 016673 265 NAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMA 343 (385)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~ 343 (385)
++.+.+.++.++.-+++....... ..++...+.+...+|...++++ .|+|....++....++++.++|+.+.|+
T Consensus 195 ---~~~~~~~~~~~~~l~~p~v~~~l~--~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGr 269 (394)
T COG2814 195 ---GSLPGPLRTLLRLLRRPGVLLGLL--ATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGR 269 (394)
T ss_pred ---CCCCcchhHHHHHhcCchHHHHHH--HHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 000111222222222233333332 3344445555555555555555 9999999999999999999999999999
Q ss_pred hhccccchhHHHHhhHHHHHHHHHHHHHhhhc
Q 016673 344 FVDKFGRRAFFLEAGTEMIIYMVTTLHSNMIQ 375 (385)
Q Consensus 344 l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 375 (385)
+.|| +.|+.+.....+.++..+.+.......
T Consensus 270 l~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~ 300 (394)
T COG2814 270 LADR-GPRRALIAALLLLALALLALTFTGASP 300 (394)
T ss_pred hccc-cchhHHHHHHHHHHHHHHHHHHhcchH
Confidence 9999 888888888788887777776655433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=240.78 Aligned_cols=299 Identities=17% Similarity=0.161 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhh
Q 016673 25 YFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGAS 104 (385)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g 104 (385)
.+|...++++++.+++++|....+.+. |.+.+++ +++..+.+++.+++.+++.+++++.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~------------------~~s~~~~g~~~s~~~~~~~~~~~~~g 64 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAG--LTMGKDL------------------GLSATMFGLAATLFYAAYVICGIPSN 64 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHH--HhhHhhc------------------CCCHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345666777777788889998887663 3444444 58999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHH
Q 016673 105 YVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLG 184 (385)
Q Consensus 105 ~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 184 (385)
+++||+|||+++..+.++..++++.+++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|
T Consensus 65 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g 144 (412)
T TIGR02332 65 IMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVT 144 (412)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccc----CCcchhHHHhhhHHHHHHHHH-hhcccccchhHHHhcCCHHHHHHHHHHHhCCC-chhHHHH
Q 016673 185 ILVANLINYGTEKI----HPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTA-NVDAEFS 258 (385)
Q Consensus 185 ~~i~~~~~~~~~~~----~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 258 (385)
..+++++++..... +..|||+.|++.+++.++..+ ..+++||+|+.... -+.++.+...+..+... +.+...+
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~ 223 (412)
T TIGR02332 145 MALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQLTLEQPEG 223 (412)
T ss_pred HHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhcccccccccc
Confidence 99999997654421 336899999998888766544 44667888742100 00111111001100000 0000000
Q ss_pred HHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhc--CCCCchHHHHHHHHHHHHHH
Q 016673 259 DLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSL--GFGSGAALYSSVITGIALCI 336 (385)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~~ 336 (385)
+.. +.....+..+++++ .+..+ ... ...++....+..+..|.|.++++. |++..+++.......++.++
T Consensus 224 ~~~---~~~~~~~~~~~~~~----~~~~~-~~~-~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~ 294 (412)
T TIGR02332 224 AFA---HAAMPQRSMLREIF----TPAIM-LYT-LAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIF 294 (412)
T ss_pred ccc---cccccHHHHHHHhc----ChHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHH
Confidence 000 00000001122222 12222 222 344555556777888999999884 67778889999999999999
Q ss_pred HHHHHHHhhccccchhH
Q 016673 337 AALISMAFVDKFGRRAF 353 (385)
Q Consensus 337 ~~~~~g~l~d~~~~r~~ 353 (385)
+.++.++++||+++|+.
T Consensus 295 g~l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 295 GMIWWSRHSDRLKERKH 311 (412)
T ss_pred HHHHHHHHhcccCccHH
Confidence 99999999999997764
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=230.50 Aligned_cols=299 Identities=15% Similarity=0.125 Sum_probs=233.4
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHh
Q 016673 19 EYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLV 98 (385)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~ 98 (385)
+++.++.++.+.+.+.++...+.+....++.+. |.++++. ++|.+|.|.+.+.+.+++.+
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~--p~l~e~~------------------~lsk~~lG~i~s~f~i~YG~ 79 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAM--PALIEDG------------------GLSKTQLGILGSAFSITYGV 79 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcc--HHHHHhc------------------CCCHHHHHHHHHHHHHHHHH
Confidence 455566778888888888888888888887663 6666665 37999999999999999999
Q ss_pred HhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHH
Q 016673 99 STFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQ 178 (385)
Q Consensus 99 ~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 178 (385)
+..+.|.++||.+.|+.+..++++.++..++++++++.+.+.++.++.|..+|..+|++...++.|++++|||+..++++
T Consensus 80 sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn 159 (448)
T COG2271 80 SKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWN 159 (448)
T ss_pred HHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHH
Q 016673 179 LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEF 257 (385)
Q Consensus 179 ~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (385)
++.++|..+.|++........+.+||..|++.++++++..+.. +..+|+|...-- .+.|+ ..
T Consensus 160 ~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL-P~ie~----------------~~ 222 (448)
T COG2271 160 TSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL-PPIEE----------------YR 222 (448)
T ss_pred hhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCHHH----------------hh
Confidence 9999999999988532444445689999999999888775555 557888752100 01111 00
Q ss_pred HHHHHHHHHHHHhc-CChhhhhccC-CcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHH
Q 016673 258 SDLIDASNAARAIK-NPFRNLFKKK-NRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIAL 334 (385)
Q Consensus 258 ~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~ 334 (385)
++..+..+++++.. .+.++++... .+.+.++.+. +..+..+..-+.+..|.|.|+.+ .|+|..+++...+.+=.++
T Consensus 223 ~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la-~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~ag 301 (448)
T COG2271 223 GDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLA-LANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAG 301 (448)
T ss_pred cCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 01111101111111 3444444322 2223333333 66777777788999999999988 9999999999999999999
Q ss_pred HHHHHHHHHhhccc--cchhHHH
Q 016673 335 CIAALISMAFVDKF--GRRAFFL 355 (385)
Q Consensus 335 ~~~~~~~g~l~d~~--~~r~~~~ 355 (385)
++|++++|+++||+ |||.+..
T Consensus 302 l~G~Ll~GwlSDklfkgrR~p~~ 324 (448)
T COG2271 302 LPGTLLAGWLSDKLFKGRRGPMA 324 (448)
T ss_pred hHHHHHHHHHHHHhcccccchHH
Confidence 99999999999997 5665543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-30 Score=236.89 Aligned_cols=308 Identities=16% Similarity=0.163 Sum_probs=221.1
Q ss_pred hhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhh
Q 016673 22 ITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTF 101 (385)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 101 (385)
.++++|.....+.++.+.++++....+.+. |.+.+++ +.++.+.+++.+.+.++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~ 65 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVL--AEVAGEF------------------GLTTVDAASLISAALISRWFGAL 65 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCChhhHHHHHHHHHHHHHHHHH
Confidence 456677777888888889999888876653 4555544 57899999999999999999999
Q ss_pred hhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHH
Q 016673 102 GASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTT 181 (385)
Q Consensus 102 ~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 181 (385)
+.|+++||+|||++++.+.++.+++++.++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+.
T Consensus 66 ~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 145 (405)
T TIGR00891 66 MFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY 145 (405)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHH
Q 016673 182 CLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLI 261 (385)
Q Consensus 182 ~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (385)
.+|..+++.++.......+.+||+.|++.++..++..+....+||++++..++++.++..+..++..+.+...
T Consensus 146 ~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 218 (405)
T TIGR00891 146 AVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI------- 218 (405)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh-------
Confidence 9999999998655443333359999988776666665555667888765433222211111111111100000
Q ss_pred HHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHH
Q 016673 262 DASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALI 340 (385)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~ 340 (385)
+...++...+.++ +.+..+....... ...............+.|.++.+ .|++..+.+.......++.+++.++
T Consensus 219 --~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~ 293 (405)
T TIGR00891 219 --ANIVMTLAAAMVQ--SAGKRWPTFVYLV-VLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCV 293 (405)
T ss_pred --hhhhhhhhHHhhh--hhhhhhHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000001 1111122121111 11222222233445567777765 8999999999999999999999999
Q ss_pred HHHhhccccchhHHHHhhHHH
Q 016673 341 SMAFVDKFGRRAFFLEAGTEM 361 (385)
Q Consensus 341 ~g~l~d~~~~r~~~~~~~~~~ 361 (385)
.+++.||++||+.+..+....
T Consensus 294 ~g~l~dr~g~~~~~~~~~~~~ 314 (405)
T TIGR00891 294 FGFLGDWLGRRKAYVCSLLAG 314 (405)
T ss_pred HHHHHHHhCchhhhHHHHHHH
Confidence 999999999999887766554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=232.87 Aligned_cols=293 Identities=19% Similarity=0.207 Sum_probs=223.0
Q ss_pred hHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhh
Q 016673 23 TSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFG 102 (385)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 102 (385)
.++.|...+++.+..+.+++|....+... |.+.+++ +.++++.+++.+.+.++..+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~~ 69 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAA--PRMAQEF------------------GLDVAQMGWAFSAGILGLLPGALL 69 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34777788888888889999988877653 4555544 579999999999999999999999
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHH
Q 016673 103 ASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTC 182 (385)
Q Consensus 103 ~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 182 (385)
.|+++||+|||+++..+.++..++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..
T Consensus 70 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 149 (406)
T PRK11551 70 GGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVP 149 (406)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHh-hcccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHH
Q 016673 183 LGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLI 261 (385)
Q Consensus 183 ~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (385)
+|..+++.++... .+..+||+.|++.++..++..+. ..++||+|++..++++.++..
T Consensus 150 ~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------------- 207 (406)
T PRK11551 150 FGGALASVIGVLA--AGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA-------------------- 207 (406)
T ss_pred HHHHHHHHHHHHH--ccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh--------------------
Confidence 9999999985433 34568999999877765555443 355788875432211110000
Q ss_pred HHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Q 016673 262 DASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALIS 341 (385)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 341 (385)
...+..++.+..+...... ...+......+....+.|.++++.|+++.+.+.......++.++++++.
T Consensus 208 ----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 275 (406)
T PRK11551 208 ----------PVLRALFGEGRATATLLLW--ISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLI 275 (406)
T ss_pred ----------hhHHHHhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHH
Confidence 0000111111111111111 1222333344556678899998899999999999999999999999999
Q ss_pred HHhhccccchhHHHHhhHHHHHHHHHHH
Q 016673 342 MAFVDKFGRRAFFLEAGTEMIIYMVTTL 369 (385)
Q Consensus 342 g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 369 (385)
|++.||++||+.+..+.+...++...+.
T Consensus 276 g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 303 (406)
T PRK11551 276 GALMDRLRPRRVVLLIYAGILASLAALA 303 (406)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776665555554443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=235.82 Aligned_cols=300 Identities=15% Similarity=0.178 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhh
Q 016673 24 SYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGA 103 (385)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 103 (385)
+.++...+.+.++.+.++++........ |.+.+++ ++++.+.++..+.+.+++.+++++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~------------------~~s~~~~~~~~~~~~~~~~l~~~~~ 73 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIM--YLIKADL------------------GLTDMEGAFLATAAFIGRPFGGALF 73 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666677778888887765442 4444444 5789999999999999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHH
Q 016673 104 SYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCL 183 (385)
Q Consensus 104 g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 183 (385)
|+++||+|||++++.+.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+
T Consensus 74 g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 153 (426)
T PRK12307 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGI 153 (426)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 016673 184 GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDA 263 (385)
Q Consensus 184 g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (385)
|.++++.+.... .+..+||+.|++.....++........||++++..++.+.+ .+..
T Consensus 154 g~~~~~~l~~~l--~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------~~~~--------- 210 (426)
T PRK12307 154 GNIIAAYFMPSF--AEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGK------------GKHS--------- 210 (426)
T ss_pred HHHHHHHHHHHH--cccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc------------cccc---------
Confidence 999999884333 34568999998865444333332233566554321110000 0000
Q ss_pred HHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 016673 264 SNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMA 343 (385)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~ 343 (385)
+...+..+.+++++++++..+....... ..+...........+.|.++++.|.++.+.+.......++.++++++.++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~ 288 (426)
T PRK12307 211 QSAWSVFSLSMKGLFNRAQFPLTLCVFI--VLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGL 288 (426)
T ss_pred ccchhhhhHHHHHHHhhchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001123445555544443332222 22222333334566789888888999888899889999999999999999
Q ss_pred hhccccchhHHHHhhHHHHHHHHHH
Q 016673 344 FVDKFGRRAFFLEAGTEMIIYMVTT 368 (385)
Q Consensus 344 l~d~~~~r~~~~~~~~~~~~~~~~~ 368 (385)
+.||++||+.+..+.++..+..+.+
T Consensus 289 l~dr~~~~~~~~~~~~~~~~~~~~~ 313 (426)
T PRK12307 289 CADRIGLKKTFSIGLLMSFLFIFPL 313 (426)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHH
Confidence 9999999998887776665554443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=239.08 Aligned_cols=317 Identities=11% Similarity=0.031 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhh
Q 016673 25 YFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGAS 104 (385)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g 104 (385)
++|.....++++.++...|.++++.+. |++.+++ |.+.++.+|+.+.+.++..++.+++|
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~--p~i~~~l------------------~~s~~~~~~~~~~~~l~~~~~~~~~G 62 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAA--PTLSMTL------------------GASGNELLWIIDIYSLVMAGMVLPMG 62 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888889999999999988763 6666655 47889999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcC-CCccchhHHHHHHHHHHH
Q 016673 105 YVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMA-PAKIRGAVNQLFQLTTCL 183 (385)
Q Consensus 105 ~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~ 183 (385)
+++||+|||++++.+..+..++++++++++|++.++++|+++|++.+...+.....+.+.+ |+++|++++++......+
T Consensus 63 ~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~ 142 (495)
T PRK14995 63 ALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG 142 (495)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888888887765 679999999999999999
Q ss_pred HHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCHHHHHHHH---------HHHhC-C-C
Q 016673 184 GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKLDEARKVL---------EKVRG-T-A 251 (385)
Q Consensus 184 g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~---------~~~~~-~-~ 251 (385)
|..+||.+++... ++.+|||.|++...+.++..++. +++||+|+.. +++.+...... ..... . +
T Consensus 143 g~~~gp~lgg~l~--~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~ 218 (495)
T PRK14995 143 GAAFGPLVGGILL--EHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKG 218 (495)
T ss_pred HHHHHHHHHHHhh--ccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhcccc
Confidence 9999999965444 45689999999887777665444 5567765321 11111111000 00000 0 0
Q ss_pred chhHH--HHH-------HHHHHHHHHHhcCCh--hhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCC
Q 016673 252 NVDAE--FSD-------LIDASNAARAIKNPF--RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFG 319 (385)
Q Consensus 252 ~~~~~--~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s 319 (385)
..... ... .......+...+++. .++++++...... ...+...........+.|.+++. +|++
T Consensus 219 ~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lq~v~g~s 293 (495)
T PRK14995 219 FLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGV-----VMAMTAMITLVGFELLMAQELQFVHGLS 293 (495)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 00000 000 000000111112222 2344443322222 22233333455667788999887 8999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHH
Q 016673 320 SGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
+.+++....+..++..++.++.|++.||+|+|+.+..+..+..++..++..
T Consensus 294 ~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~ 344 (495)
T PRK14995 294 PLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAM 344 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888888777777666554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=242.01 Aligned_cols=302 Identities=12% Similarity=0.061 Sum_probs=214.4
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhH
Q 016673 20 YRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVS 99 (385)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 99 (385)
+...+..+....+.+++.++...+...++.+. |.+.+++ +++.++.|++.+.+.+++.++
T Consensus 21 ~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~--~~i~~~~------------------~~s~~~~g~~~s~~~~~~~~~ 80 (467)
T PRK09556 21 KMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQ--NDMISTY------------------GLSTTELGMIGLGFSITYGVG 80 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh--HHHHHhc------------------CCCHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777777888877653 5565555 589999999999999999999
Q ss_pred hhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHH
Q 016673 100 TFGASYVTRSRGRRASIMVGSVSFFIGAILNAC-----AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVN 174 (385)
Q Consensus 100 ~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 174 (385)
+++.|+++||+|||+++..+.++.+++.+..+. ++|++.+++.|+++|++.+...+...+++.|++|+++|++++
T Consensus 81 ~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~ 160 (467)
T PRK09556 81 KTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFL 160 (467)
T ss_pred HhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeE
Confidence 999999999999999999988888877776665 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc-CCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCHHHHHHHHHHHhCCCc
Q 016673 175 QLFQLTTCLGILVANLINYGTEKI-HPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKLDEARKVLEKVRGTAN 252 (385)
Q Consensus 175 ~~~~~~~~~g~~i~~~~~~~~~~~-~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (385)
++...+.++|.+++++++...... ...+||..|.+.+++.++..+.. ++.+++|+....+ +.++ . ..+..
T Consensus 161 gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~---~~~~~- 232 (467)
T PRK09556 161 GFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---I---FGEPI- 232 (467)
T ss_pred EeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---c---ccCcc-
Confidence 999999999999999885433221 12269998888777766654444 4456666421111 1110 0 00000
Q ss_pred hhHHHHHHHHHHHHHHHhcCChhh-----hhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHH
Q 016673 253 VDAEFSDLIDASNAARAIKNPFRN-----LFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYS 326 (385)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~ 326 (385)
..+ + +..++.+.+..+ .++++. .+... +..++..........|.|.|+++ +|++..+++..
T Consensus 233 -~~~-~------~~~~~~~~~~~~~~~~~~l~~~~----~~~~~-~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~ 299 (467)
T PRK09556 233 -SEE-D------KETESTDMTKWQIFVEYVLKNPV----IWLLC-FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINT 299 (467)
T ss_pred -chh-h------hccccccCcHHHHHHHHHHcChH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence 000 0 000000111111 222222 22222 33444444456678899999876 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHH
Q 016673 327 SVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMI 362 (385)
Q Consensus 327 ~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~ 362 (385)
.....++.+++.++.|+++||++||+.+........
T Consensus 300 ~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~ 335 (467)
T PRK09556 300 FTLFEIGALVGSLLWGWLSDLANGRRALVACIALAL 335 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 999999999999999999999999887665444333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=232.52 Aligned_cols=288 Identities=17% Similarity=0.198 Sum_probs=202.1
Q ss_pred HHHHHHHHHhhhhhccccccccccccchh-HHHhhhhhhhhhhcccccccccccCCchHHHHHH-----HHHHHHHHhHh
Q 016673 27 LIACMVAAMGGSLFGYDLGVSGGVTSMDD-FLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFT-----SSLYFAGLVST 100 (385)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~l~~~~~~ 100 (385)
+.......++.++++||...++.+. |. +.++++|. .++. .+++. ++.+++..+++
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~g~ 81 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITA--ALVFNREFFPQ----------------VSPA-MGTLAAFATFGVGFLFRPLGG 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCC----------------CCcH-HHHHHHHHHHHHHHHHHhhHH
Confidence 4466677778899999999877552 22 23334332 2333 34433 35567788999
Q ss_pred hhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchh
Q 016673 101 FGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA 172 (385)
Q Consensus 101 ~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 172 (385)
++.|+++||+|||++++.+.++++++++++++++|+. .++++|+++|++.|..++....++.|++|+++|++
T Consensus 82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~ 161 (438)
T PRK09952 82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF 161 (438)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH
Confidence 9999999999999999999999999999999999987 58889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc------cCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHHH
Q 016673 173 VNQLFQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEK 246 (385)
Q Consensus 173 ~~~~~~~~~~~g~~i~~~~~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 246 (385)
..+..+.+..+|.+++..+...... ..+++||+.|++.+++.++........||+|++..++++.++.
T Consensus 162 ~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~------ 235 (438)
T PRK09952 162 YSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA------ 235 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc------
Confidence 9999999999999988766433221 1246999999998877665544445578887653222111000
Q ss_pred HhCCCchhHHHHHHHHHHHHHHHhcCChhh-hhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHH
Q 016673 247 VRGTANVDAEFSDLIDASNAARAIKNPFRN-LFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAAL 324 (385)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~ 324 (385)
+.+.+..+ +.+++ +.+.... ...++.....+....+.|.++++ .|++.....
T Consensus 236 ----------------------~~~~~~~~~l~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~ 289 (438)
T PRK09952 236 ----------------------KKRIPVIEALLRHP---GAFLKII-ALRLCELLTMYIVTAFALNYSTQNLGLPRELFL 289 (438)
T ss_pred ----------------------cccCCHHHHHHHch---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 00111111 22222 1122221 22333344455667788888765 888876655
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHH
Q 016673 325 YSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYM 365 (385)
Q Consensus 325 ~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~ 365 (385)
......++..+++.++.|+++||++||+.+..+.++..++.
T Consensus 290 ~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~ 330 (438)
T PRK09952 290 NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSA 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 55666677788889999999999999998887766554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-36 Score=277.47 Aligned_cols=326 Identities=35% Similarity=0.649 Sum_probs=253.8
Q ss_pred HHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhc
Q 016673 32 VAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG 111 (385)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~G 111 (385)
++.++.+.+|||...++..........++.++..++ +.+.+..+.++..+...+|..+|+++.|.++||+|
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~G 74 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSES---------SCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYG 74 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccc---------cccchHHHHHHHHHHHHhhhccccccccccccccc
Confidence 345667899999999877754333333332211111 11125567899999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHH
Q 016673 112 RRASIMVGSVSFFIGAILNACAV---HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVA 188 (385)
Q Consensus 112 rr~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~ 188 (385)
||++++++.++..+++++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++..++.+....+|.+++
T Consensus 75 Rk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~ 154 (451)
T PF00083_consen 75 RKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLA 154 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCC-cchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Q 016673 189 NLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAA 267 (385)
Q Consensus 189 ~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (385)
..++.......+ .+||+.+.+..+++++..+..+++||||+|+.+++|.+++++.+++.++.+..+++.++..++.++.
T Consensus 155 ~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (451)
T PF00083_consen 155 SLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKES 234 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccc
Confidence 888644433232 5699999999999988877778899999999999999999999988666554444444433333333
Q ss_pred HHhcCChhhhhccCC-cchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 016673 268 RAIKNPFRNLFKKKN-RPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVD 346 (385)
Q Consensus 268 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 346 (385)
++.+.+++++++.+. +++....+. +..+....+......|.|.+.++.+.+.. ........+...++.+++..+.|
T Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 311 (451)
T PF00083_consen 235 QESKASWRDLFRNKKYRKRLLIALL-LQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLID 311 (451)
T ss_pred cccceeeeecccccccccccccccc-ccccccccccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence 333356777777654 344444444 45555566667778888888888777766 33444556777788888889999
Q ss_pred cccchhHHHHhhHHHHHHHHHHH
Q 016673 347 KFGRRAFFLEAGTEMIIYMVTTL 369 (385)
Q Consensus 347 ~~~~r~~~~~~~~~~~~~~~~~~ 369 (385)
|+|||+.++.+...++++.+.++
T Consensus 312 ~~GRr~~~i~~~~~~~~~~~~~~ 334 (451)
T PF00083_consen 312 RFGRRKLLIIGLLLMAICSLILG 334 (451)
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999888888887775
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=231.42 Aligned_cols=286 Identities=14% Similarity=0.111 Sum_probs=204.7
Q ss_pred hHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhh
Q 016673 23 TSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFG 102 (385)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 102 (385)
++.++.......++.+...++...++.. .|.+.+++ +++.++.+++.+.+.+++.+++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~ 77 (434)
T PRK11663 18 RYWRRHILITMYLGYALFYFTRKSFNAA--MPEMLADL------------------GLSRSDIGLLATLFYITYGVSKFV 77 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHh--hHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555556666666666655444 25555444 589999999999999999999999
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHH
Q 016673 103 ASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTC 182 (385)
Q Consensus 103 ~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 182 (385)
.|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..
T Consensus 78 ~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ 157 (434)
T PRK11663 78 SGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHN 157 (434)
T ss_pred hhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHH-hhcccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHH
Q 016673 183 LGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLI 261 (385)
Q Consensus 183 ~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (385)
+|..+++.+++.. .+..+||+.|++.+++.++..+ ..+++||+|++...+...++..+ . ++
T Consensus 158 ~g~~~~~~~~~~l--~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------------~-~~-- 219 (434)
T PRK11663 158 VGGALIPLVVGAI--ALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD-------------A-LE-- 219 (434)
T ss_pred HHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc-------------c-cc--
Confidence 9999999985544 3456899999988877665543 34557887753211100000000 0 00
Q ss_pred HHHHHHHHhcCChhhhhcc-CCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHH
Q 016673 262 DASNAARAIKNPFRNLFKK-KNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAAL 339 (385)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~ 339 (385)
..++.+..+.++++.++. ..+.+...... ...+........+..+.|.++++ +|++..+++.......++.+++++
T Consensus 220 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~ 297 (434)
T PRK11663 220 -LAQQQEGAGLSRKEILTKYVLLNPYIWLLS-FSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGAL 297 (434)
T ss_pred -cchhccccCCChhhhHHHHHhcChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000001122222211 11111122222 23333444455677788999865 899999999999999999999999
Q ss_pred HHHHhhccc
Q 016673 340 ISMAFVDKF 348 (385)
Q Consensus 340 ~~g~l~d~~ 348 (385)
+.|++.||+
T Consensus 298 ~~g~l~dr~ 306 (434)
T PRK11663 298 VAGWGSDKL 306 (434)
T ss_pred HHhhhHHHh
Confidence 999999998
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=236.30 Aligned_cols=283 Identities=22% Similarity=0.345 Sum_probs=214.4
Q ss_pred ccccCC---chHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Q 016673 76 DYCKYD---NQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGF 152 (385)
Q Consensus 76 ~~~~~~---~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~ 152 (385)
++++++ ..+.++..+++.++..+++++.|+++||+|||++++++.++..++.+++++++|++.++++|++.|++.+.
T Consensus 117 ~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~ 196 (505)
T TIGR00898 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGG 196 (505)
T ss_pred EEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccc
Confidence 344566 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHH
Q 016673 153 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 232 (385)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~ 232 (385)
..+...+++.|++|+++|+++.++...+..+|.++++.+++... +||+.+++.+++.++..+..+++||+|+|+.
T Consensus 197 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~ 271 (505)
T TIGR00898 197 IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-----DWRWLQLAVSLPTFLFFLLSWFVPESPRWLI 271 (505)
T ss_pred hHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 99999999999999999999999999999999999999865433 4999999999888877777788999999999
Q ss_pred hcCCHHHHHHHHHHHhCCCchh--HHHHHHHHHHH-HHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhH
Q 016673 233 EQGKLDEARKVLEKVRGTANVD--AEFSDLIDASN-AARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 309 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (385)
.+++.+++.+..++..+.+... .+..+...+++ .++..+.+++++++++..+...+... ...+.... ..+..
T Consensus 272 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~----~~~~~ 346 (505)
T TIGR00898 272 SQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLM-MLWFTTAF----SYYGL 346 (505)
T ss_pred HCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHH-HHHHHHHH----HHHHH
Confidence 9999988887776654433211 11111110111 11111346677777665555444333 22222111 11222
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 310 PVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 310 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
+.+..+.+.+ ........++..+++.++.+++.||+|||+.+.++.++.+++.+++...
T Consensus 347 ~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~ 405 (505)
T TIGR00898 347 VLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV 405 (505)
T ss_pred hccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3333334444 2344556678888999999999999999999998888877777666554
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=224.43 Aligned_cols=243 Identities=16% Similarity=0.163 Sum_probs=187.0
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
|.++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++.+++++|++.++++|+++|++.+...+...
T Consensus 40 ~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~ 119 (390)
T PRK03545 40 HMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITA 119 (390)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~ 237 (385)
+++.|++|+++|++++++...+.++|..++|+++.... +..|||+.|++.++.+++..+.. ..+||+|+ + +.
T Consensus 120 ~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~--~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~-~~ 192 (390)
T PRK03545 120 SLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG--QYLGWRTTFLAIGGGALITLLLLIKLLPLLPS----E-HS 192 (390)
T ss_pred HHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH--HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC----C-Cc
Confidence 99999999999999999999999999999999965433 44689999999888777665444 34566432 0 00
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-c
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-L 316 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (385)
++ .++.++.++++..+..... .+...........+.+.++++ .
T Consensus 193 ~~-------------------------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~ 236 (390)
T PRK03545 193 GS-------------------------------LKSLPLLFRRPALVSLYLL-----TVVVVTAHFTAYSYIEPFVQQVA 236 (390)
T ss_pred ch-------------------------------HHHHHHHHhCcHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 0012234444332222221 111222223334555666665 7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHH
Q 016673 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYM 365 (385)
Q Consensus 317 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~ 365 (385)
|.+..+++......+++.++++++.+++.||++||+... +..+..++.
T Consensus 237 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~ 284 (390)
T PRK03545 237 GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCL 284 (390)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHH
Confidence 999999999999999999999999999999999876543 444444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=225.69 Aligned_cols=307 Identities=21% Similarity=0.276 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhh
Q 016673 24 SYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGA 103 (385)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 103 (385)
++.+.....+.+..+..+++....+.. .|.+.+++ +.++.+.+++.+.+.++..++.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFA--APAISAEW------------------GLDPVQLGFLFSAGLIGMAFGALFF 72 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHhhcc------------------CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555566666666554433 23443333 5788999999999999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHH
Q 016673 104 SYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCL 183 (385)
Q Consensus 104 g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 183 (385)
|+++||+|||+.+..+.++..++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+
T Consensus 73 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 152 (398)
T TIGR00895 73 GPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPI 152 (398)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCcchhHHHhhhHHHHHHH-HHhhcccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHH
Q 016673 184 GILVANLINYGTEKIHPWGWRLSLGLATVPATLM-FVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLID 262 (385)
Q Consensus 184 g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (385)
|..+++.+++... +..+||+.+++.++..++. .+...++||++++..++ +.++..+..++.......+.+. +..+
T Consensus 153 g~~~~~~~~~~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~ 228 (398)
T TIGR00895 153 GAAVGGFLAGWLI--PVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALPE 228 (398)
T ss_pred HHHHHHHHHHHHh--hcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-cccc
Confidence 9999999954433 4468999998886555544 34446678887665444 3333222222221111000000 0000
Q ss_pred HHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Q 016673 263 ASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISM 342 (385)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g 342 (385)
+++.++..+...+..++.+..+...... ...+...........+.|.+.++.|.++.+.+.......++.+++.++.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (398)
T TIGR00895 229 QKATQGTKRSVFKALFQGKTARITVLLW--LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFG 306 (398)
T ss_pred cccccchhhHHHHHHhcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000111122233333222222222 22334444556667788877777999999999999999999999999999
Q ss_pred HhhccccchhHHHH
Q 016673 343 AFVDKFGRRAFFLE 356 (385)
Q Consensus 343 ~l~d~~~~r~~~~~ 356 (385)
++.||++||+....
T Consensus 307 ~l~~~~~~~~~~~~ 320 (398)
T TIGR00895 307 WLADRLGPRVTALL 320 (398)
T ss_pred HHHhhcchHHHHHH
Confidence 99999999854443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-28 Score=223.35 Aligned_cols=278 Identities=21% Similarity=0.333 Sum_probs=194.5
Q ss_pred HHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHH-HHHHHH-----HHHHHhHhhh
Q 016673 29 ACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLT-LFTSSL-----YFAGLVSTFG 102 (385)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~-----~l~~~~~~~~ 102 (385)
.....+++.+++.+|...++... |.+.++++ .++.+.+ +..+.. .++..+++++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~--~~i~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~ig~~~ 75 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYA--TAIAKTFF------------------PAGNEFASLMLTFAVFGAGFLMRPLGAIV 75 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhC------------------CCCCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 46677788999999999988664 56666553 3444433 322222 3333578999
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHH
Q 016673 103 ASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVN 174 (385)
Q Consensus 103 ~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 174 (385)
.|+++||+|||+.++.+..+..+++++++++++++ .++++|+++|++.+...+....++.|++|+++|++++
T Consensus 76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~ 155 (434)
T PRK15075 76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT 155 (434)
T ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence 99999999999999999999999999999999887 4688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc------cCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHHHHh
Q 016673 175 QLFQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVR 248 (385)
Q Consensus 175 ~~~~~~~~~g~~i~~~~~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 248 (385)
++......+|..+++.++..... .+.+|||+.|++..+...+........||++++..++++
T Consensus 156 ~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~------------ 223 (434)
T PRK15075 156 SWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR------------ 223 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc------------
Confidence 99999888888888777654321 235799999987554332222222223443211100000
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHH
Q 016673 249 GTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSS 327 (385)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~ 327 (385)
.+.++.++...++ ++...... ...+.....+.....|.|.++++ .|++..+.+...
T Consensus 224 -------------------~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~ 280 (434)
T PRK15075 224 -------------------PSMREIFRSLAAN---WRIVLAGM-LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVT 280 (434)
T ss_pred -------------------cccccHHHHHHHh---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 0000001111111 12222212 22333444566778889999987 899988888888
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhHHHHhhHHH
Q 016673 328 VITGIALCIAALISMAFVDKFGRRAFFLEAGTEM 361 (385)
Q Consensus 328 ~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~ 361 (385)
....++.+++.++.|+++||++||+.+..+..+.
T Consensus 281 ~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~ 314 (434)
T PRK15075 281 LCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLA 314 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 8889999999999999999999999877765443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=222.51 Aligned_cols=321 Identities=16% Similarity=0.187 Sum_probs=218.1
Q ss_pred hHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhh
Q 016673 23 TSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFG 102 (385)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 102 (385)
++++|.....+.++.+.++++....+... |.+.+++ ++++.+.+++.+.+.+++.+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~ 74 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVL--TEVQGEF------------------GLTTVQAASLISAAFISRWFGGLL 74 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777788888887765442 4444444 578999999999999999999999
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHH
Q 016673 103 ASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTC 182 (385)
Q Consensus 103 ~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 182 (385)
.|+++||+|||+.++.+.++.+++.+.+++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..
T Consensus 75 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 154 (496)
T PRK03893 75 LGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFS 154 (496)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHH-HHH
Q 016673 183 LGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFS-DLI 261 (385)
Q Consensus 183 ~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 261 (385)
+|..+++.++... .+..+||+.|++..+..++.++.....||++++..++++.++..+..+.....+....... ...
T Consensus 155 ~g~~~~~~~~~~l--~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (496)
T PRK03893 155 IGAVVAAQVYSLV--VPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLA 232 (496)
T ss_pred HHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHH
Confidence 9999999996543 3456899999876555544444445578776543322221111111111110000000000 000
Q ss_pred H----HHHHHHHhcCChh-------------hh-h-ccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHH-hcCCCCc
Q 016673 262 D----ASNAARAIKNPFR-------------NL-F-KKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ-SLGFGSG 321 (385)
Q Consensus 262 ~----~~~~~~~~~~~~~-------------~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~ 321 (385)
. ...........+. .. . ....++....... ...+...........+.|.+++ +.|++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~ 311 (496)
T PRK03893 233 AAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLM-VVVLFAFLYSWPIQALLPTYLKTDLGYDPH 311 (496)
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH-HHHHHHHhccchHHHHHHHHHHhhcCCCHH
Confidence 0 0000000000000 00 0 0111111111111 1222222222345678899986 5899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHH
Q 016673 322 AALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMV 366 (385)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 366 (385)
+++...+...++.+++.++.+++.||++||+.+..+..+..+..+
T Consensus 312 ~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 356 (496)
T PRK03893 312 TVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLII 356 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988777655554443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=215.55 Aligned_cols=233 Identities=18% Similarity=0.219 Sum_probs=180.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
++++++.++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+.+++++|++.++++|+++|++.+...+...
T Consensus 51 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 130 (394)
T PRK10213 51 GISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSA 130 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~ 237 (385)
+++.|++|+++|+++.++...+.++|..++|+++.... +.++||+.|++.++++++..+.. ...||+|+. ++.
T Consensus 131 ~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~--~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~----~~~ 204 (394)
T PRK10213 131 SLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG--ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE----PSH 204 (394)
T ss_pred HHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc----ccc
Confidence 99999999999999999999999999999999965443 45689999998877666554433 335665320 000
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHh-HHHHHHhc
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY-APVIFQSL 316 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 316 (385)
+ .++..+.++++..+.... ..+...........+ .|.+.++.
T Consensus 205 ~--------------------------------~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~ 247 (394)
T PRK10213 205 Q--------------------------------KQNTFRLLQRPGVMAGMI-----AIFMSFAGQFAFFTYIRPVYMNLA 247 (394)
T ss_pred c--------------------------------hhHHHHHhcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 001122333322222111 122222223333444 47777778
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHH
Q 016673 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFF 354 (385)
Q Consensus 317 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~ 354 (385)
|+++.+.+......+++.+++.++.+++.||.+++...
T Consensus 248 g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~ 285 (394)
T PRK10213 248 GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALA 285 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 99999999999999999999999999999995444333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=228.27 Aligned_cols=311 Identities=17% Similarity=0.185 Sum_probs=224.2
Q ss_pred HHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhh
Q 016673 30 CMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS 109 (385)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~ 109 (385)
...++++.++..+|....+... |.+.+++ |.+.++.+++.+.+.++..++.++.|+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 63 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAI--PTIAGDL------------------GSSLSQVQWVITSYMLANAISIPLTGWLAKR 63 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHhc------------------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4455567777788887766552 5555544 4788899999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHH
Q 016673 110 RGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVAN 189 (385)
Q Consensus 110 ~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 189 (385)
+|||++++.+.++..++.+++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++......+|..++|
T Consensus 64 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 143 (485)
T TIGR00711 64 FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGP 143 (485)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCHHHHHHHH--------H-H-HhCCC-ch-hH-
Q 016673 190 LINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKLDEARKVL--------E-K-VRGTA-NV-DA- 255 (385)
Q Consensus 190 ~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~--------~-~-~~~~~-~~-~~- 255 (385)
.+++.. .++.+||+.|++.+.++++..+.. ++.||+++. ++++.+...... . . ..+.. +. +.
T Consensus 144 ~~~~~l--~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (485)
T TIGR00711 144 TLGGWI--IENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSN 219 (485)
T ss_pred ccHhHh--ccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCch
Confidence 995443 456789999999887776665544 446664431 112222111000 0 0 00000 00 00
Q ss_pred HHH-HH-------HHHHHHHHHhcCCh--hhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHH
Q 016673 256 EFS-DL-------IDASNAARAIKNPF--RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAAL 324 (385)
Q Consensus 256 ~~~-~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~ 324 (385)
+.. .. ......+...+++. .+.++++...... +..+...........+.|.++++ .|+++.+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g 294 (485)
T TIGR00711 220 EILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGC-----VYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAG 294 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 000 00 00000111112222 2344444333222 22333344455667788999887 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHH
Q 016673 325 YSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTL 369 (385)
Q Consensus 325 ~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 369 (385)
.......++.+++.++.+++.||++||+.+..+..+.+++..++.
T Consensus 295 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~ 339 (485)
T TIGR00711 295 LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRA 339 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998888887777776665
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=215.51 Aligned_cols=248 Identities=13% Similarity=0.119 Sum_probs=190.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+++.++.++..+.+.+++.+++++.|+++||+|||+++..+..+.+++.+.+++++|++.++++|+++|++.+...+...
T Consensus 40 ~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~ 119 (393)
T PRK09705 40 GMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMP 119 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccc-ccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~ 237 (385)
.++.|++| ++|+++++.+..+...|..+++.++...... ..+||+.+.+.++..++..+..+.. ++.|+ + +
T Consensus 120 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~- 191 (393)
T PRK09705 120 SVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH-SETWYQTLAWWALPAVVALFAWWWQSAREVA----S-S- 191 (393)
T ss_pred HHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc----c-c-
Confidence 99999997 7899999999999989999988886443321 1379998876655544443333222 22111 0 0
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcC
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLG 317 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 317 (385)
+ ++ +....+.++++ +.+... ...+.....+.....+.|.+++++|
T Consensus 192 -~----------------------------~~-~~~~~~~l~~~---~~~~l~--~~~~~~~~~~~~~~~~lp~~l~~~g 236 (393)
T PRK09705 192 -H----------------------------KT-TTTPVRVVFTP---RAWTLG--VYFGLINGGYASLIAWLPAFYIEIG 236 (393)
T ss_pred -c----------------------------CC-CcCCcccccCH---hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0 00 00111222222 222111 2233334456677788899998899
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHH
Q 016673 318 FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTL 369 (385)
Q Consensus 318 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 369 (385)
.+..+++......+++.++++++.+++.||++||+....+..+..++..++.
T Consensus 237 ~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~ 288 (393)
T PRK09705 237 ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFI 288 (393)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988888777666665543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=214.48 Aligned_cols=281 Identities=14% Similarity=0.095 Sum_probs=208.7
Q ss_pred HHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhhhh
Q 016673 28 IACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVT 107 (385)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~ 107 (385)
.....++++.++.+.+....+... |++.+++ +++.++.+++.+.+.+++.+++++.|++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~~------------------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~ 66 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVM--GPIAEYF------------------NLPVSSMSNTFTFLNAGILISIFLNAWLM 66 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677777766666552 5555554 58999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHH
Q 016673 108 RSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILV 187 (385)
Q Consensus 108 d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i 187 (385)
||+|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+....++.|++|+++|+++++..+....+|..+
T Consensus 67 dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 146 (394)
T PRK03699 67 EIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI 146 (394)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Q 016673 188 ANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAA 267 (385)
Q Consensus 188 ~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (385)
+|.+..... .+..+||+.|.+.+++.++..+..++ .+.|+. ++++.+
T Consensus 147 ~~~~~~~l~-~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~~----------------------------- 193 (394)
T PRK03699 147 FPIIAAYLL-ARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAPK----------------------------- 193 (394)
T ss_pred HHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCcc-----------------------------
Confidence 988854332 12358999999887776665444332 222210 000000
Q ss_pred HHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 016673 268 RAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVD 346 (385)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 346 (385)
+.+.. .+....+...... +..++.......+..|.|.++++ +|+++.+++.......++..+++++.++++|
T Consensus 194 -~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d 266 (394)
T PRK03699 194 -ADKPV----AKEKWGIGVLFLA--IAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVR 266 (394)
T ss_pred -ccCcc----ccccCChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0111112222222 23344444456677899999966 8999999999999999999999999999999
Q ss_pred cccchhHHHHhhHHHHHHHHHH
Q 016673 347 KFGRRAFFLEAGTEMIIYMVTT 368 (385)
Q Consensus 347 ~~~~r~~~~~~~~~~~~~~~~~ 368 (385)
|+++|+.+.....+..+...++
T Consensus 267 r~~~~~~l~~~~~~~~~~~~~~ 288 (394)
T PRK03699 267 FFDLQRILTVLAGLALVLMYLF 288 (394)
T ss_pred HhchhhHHHHHHHHHHHHHHHH
Confidence 9999998877666555544444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=215.62 Aligned_cols=248 Identities=11% Similarity=0.122 Sum_probs=190.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
|.+.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++++++|++.+++.|+++|++.+...+...
T Consensus 34 g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 113 (382)
T PRK10091 34 GISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGA 113 (382)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~ 237 (385)
.++.|++|+++|+++++....+..+|..++|+++... .+..+||+.|++.++..++..+.. .++||.++ +.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l--~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~ 187 (382)
T PRK10091 114 IVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL--SQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAKG 187 (382)
T ss_pred HHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH--hhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----cccc
Confidence 9999999999999999999999999999999986543 344689999999888766655443 45677532 0000
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-c
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-L 316 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (385)
+. + + .+ +.++++. .+.... ..+...........+.+.++++ .
T Consensus 188 ~~------------------~------~-------~~-~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 230 (382)
T PRK10091 188 GL------------------R------E-------QF-HFLRSPA---PWLIFA--ATMFGNAGVFAWFSYIKPYMMFIS 230 (382)
T ss_pred CH------------------H------H-------HH-HHhcChH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 0 0 00 1112221 111111 1112222222333444555554 8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHH
Q 016673 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTL 369 (385)
Q Consensus 317 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 369 (385)
|+++.+.+......+++.++++++.+++.||+++|+.+..+..+.+++.+++.
T Consensus 231 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~ 283 (382)
T PRK10091 231 GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLF 283 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888777776665544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=222.24 Aligned_cols=307 Identities=12% Similarity=0.092 Sum_probs=217.2
Q ss_pred chhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhh----hhhhhcccccccccccCCchHHHHHHHHHHHHH
Q 016673 21 RITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPK----VYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAG 96 (385)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 96 (385)
...+.+|.+..++.++......|....+.+. +.+.++-.+. ...+.+.....+++++++..+.|++.+.+.+++
T Consensus 12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~ 89 (465)
T TIGR00894 12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTM--VAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQ 89 (465)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhheEEE--EEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHH
Confidence 3455667777777777777777887777653 2332211000 000000111122367899999999999999999
Q ss_pred HhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHH
Q 016673 97 LVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA--VHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVN 174 (385)
Q Consensus 97 ~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 174 (385)
.+++++.|+++||+|||+++..+.++.+++++++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++
T Consensus 90 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 169 (465)
T TIGR00894 90 IIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLL 169 (465)
T ss_pred HHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999887554 56888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCC-cchhHHHhhhHHHHHHHHHhhcc-cccchhHHHhcCCHHHHHHHHHHHhCCCc
Q 016673 175 QLFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLF-LPETPNSLVEQGKLDEARKVLEKVRGTAN 252 (385)
Q Consensus 175 ~~~~~~~~~g~~i~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (385)
++...+..+|..+++++++... +. .+||+.|++.++..++..+.+++ .+|+|+...+. +.++ .+..++
T Consensus 170 ~~~~~~~~~g~~i~~~l~~~l~--~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~-~~~i~~------ 239 (465)
T TIGR00894 170 GMSTSGFQLGTFIFLPISGWLC--ESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI-SKFE-KKYINS------ 239 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC-CHHH-HHHHHh------
Confidence 9999999999999999965443 34 38999999998887776665544 56666421111 1111 000000
Q ss_pred hhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHH
Q 016673 253 VDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITG 331 (385)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~ 331 (385)
..++++.+++.+.+++++++++. ..... ...++.....+.+..|+|.++++ +|++..+.+.......
T Consensus 240 -------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~ 307 (465)
T TIGR00894 240 -------SLQGQKGSTRQSLPIKAIPKSLP----VWAIW-FAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPY 307 (465)
T ss_pred -------hcccccCCCCCCCCHHHHhcCHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHH
Confidence 00000000111234555554432 22222 34555556667788899999877 8999999999999999
Q ss_pred HHHHHHHHHHHHhhccccch
Q 016673 332 IALCIAALISMAFVDKFGRR 351 (385)
Q Consensus 332 ~~~~~~~~~~g~l~d~~~~r 351 (385)
++.+++.++.|+++||+++|
T Consensus 308 ~~~~i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 308 LFAWLCSIFAGYLADFLKSS 327 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999987543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=215.06 Aligned_cols=255 Identities=15% Similarity=0.160 Sum_probs=198.0
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+.++++++++.+++.|++.|++.+...+...
T Consensus 36 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 115 (385)
T TIGR00710 36 STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQ 115 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~ 237 (385)
+++.|++|+++|+++.++.+....+|..+++.+++... +..+||+.+++.++..++..+.. ++.||+++.. ++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 190 (385)
T TIGR00710 116 ALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL--VWLSWHAIFAFLSLAGILLSALIFFILPETLPYE---ARI 190 (385)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc---ccC
Confidence 99999999999999999999999999999999965433 34589999998877766665544 4466654210 000
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-c
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-L 316 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (385)
++ ++..+.+++.++++..+...+ ..............+.|.++++ +
T Consensus 191 ~~----------------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 237 (385)
T TIGR00710 191 QI----------------------------STYFETFLLLLKSKMFWGYAL-----IYGASFGGFFAFFSGAPFVYIDIM 237 (385)
T ss_pred CH----------------------------HHHHHHHHHHHcCchhHHHHH-----HHHHHHHHHHHHHHcChHHHHHHc
Confidence 00 000011233344433322221 1222223344556677877764 8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 317 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
|.++.+.+.......++.+++.++.+++.||+++|+.+..+..+..++..++...
T Consensus 238 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (385)
T TIGR00710 238 GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEIT 292 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887777776666655543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=212.84 Aligned_cols=295 Identities=16% Similarity=0.109 Sum_probs=218.0
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhH
Q 016673 20 YRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVS 99 (385)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 99 (385)
++.+++.+.....+.+..+...++...+.+. +|.+.+++ +.++.+.++..+.+.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~------------------~~s~~~~~~~~~~~~~~~~~~ 64 (406)
T PRK15402 5 ARLGRQALLFPLCLVLFEFATYIANDMIQPG--MLAVVEDF------------------NAGAEWVPTSMTAYLAGGMFL 64 (406)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhhHhcc--hHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777766666665544 35555555 578999999999999999999
Q ss_pred hhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHH
Q 016673 100 TFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQL 179 (385)
Q Consensus 100 ~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 179 (385)
+++.|+++||+|||++++.+..+..++.+.+.++++++.+++.|+++|++.+...+...+++.|.+|+++|.++.++...
T Consensus 65 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 144 (406)
T PRK15402 65 QWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMAN 144 (406)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHH
Q 016673 180 TTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFS 258 (385)
Q Consensus 180 ~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (385)
...+|..++|.++.... +..+||+.|++.++..++..+.. +..||+++.. ++..+ .
T Consensus 145 ~~~~~~~~g~~i~~~l~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------------~- 201 (406)
T PRK15402 145 VALLAPLLGPLVGAALI--HVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GEKLS-----------------L- 201 (406)
T ss_pred HHHHHHHHHHHHHHHHH--HccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---ccccc-----------------H-
Confidence 88899999999865443 34589999998887777665544 4467664211 00000 0
Q ss_pred HHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHH
Q 016673 259 DLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIA 337 (385)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~ 337 (385)
++..+++++.++++..+.... ..+...........+.|.++.+ +|.++.+.+.......++.+++
T Consensus 202 ---------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g 267 (406)
T PRK15402 202 ---------KELGRDYKLVLKNRRFVAGAL-----ALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAG 267 (406)
T ss_pred ---------HHHHHHHHHHHcCcHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 000111233444433222111 1222222233445566777655 8999888888888788889999
Q ss_pred HHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 338 ALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 338 ~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
.++.+++.||+++|+.+..+..+..++..++...
T Consensus 268 ~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~ 301 (406)
T PRK15402 268 NLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALA 301 (406)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888877777666666554
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=216.79 Aligned_cols=256 Identities=17% Similarity=0.125 Sum_probs=191.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+++.++.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+.+++++|++.++++|++.|++.+...+...
T Consensus 34 ~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 113 (377)
T TIGR00890 34 GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIAL 113 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhc-ccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL-FLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~ 237 (385)
..+.|++| ++|+++.++...+.++|..+++++.... .+..+||+.|++.++..++..+..+ +++|+|+.. ++++.
T Consensus 114 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 189 (377)
T TIGR00890 114 NTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSV--INLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL-IKTNI 189 (377)
T ss_pred HHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc-cccCc
Confidence 88999986 5799999999999999988766553322 2345899999998888777655543 455443210 00000
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcC
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLG 317 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 317 (385)
+ .+ +.+.+.++.++++..+.... ..+...........+.+.+.++.|
T Consensus 190 ~--------------~~--------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 236 (377)
T TIGR00890 190 E--------------VS--------------VKDYTVWEMLRTPQFWVLYL-----SFFLNAVSGLLLIGLYKPYGQSLG 236 (377)
T ss_pred c--------------cc--------------hhhhhHHHHHcCccHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHcC
Confidence 0 00 00011223344333222221 122222223334445566777788
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 318 FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 318 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
.+..+.+.......++.++++++.+++.||++||+.+..+..+..++.+++...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 290 (377)
T TIGR00890 237 LSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI 290 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc
Confidence 888888999999999999999999999999999999888887777777665543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-27 Score=209.46 Aligned_cols=230 Identities=16% Similarity=0.058 Sum_probs=166.4
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
++++.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......+|++.++++|+++|++.+. .+...
T Consensus 22 ~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~ 100 (368)
T TIGR00903 22 DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAF 100 (368)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHH
Confidence 58999999999999999999999999999999999887666555545443333347999999999999999986 45666
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~ 237 (385)
..+.|++|+++|++++++.+.+..+|..++++++.... ++.|||+.|++.++++++..+.. +++||+|++.. +.
T Consensus 101 ~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~--~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~---~~ 175 (368)
T TIGR00903 101 APAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY--TAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA---EG 175 (368)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CC
Confidence 66799999999999999999999999999999965543 45799999999888776665444 56899875321 00
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcC
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLG 317 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 317 (385)
.+ . ++ . .++++++++++..+... ...++....++.+..|+|.++++.|
T Consensus 176 ~~---------------~--~~------~----~~~~~~ll~~~~~~~~~-----~~~~~~~~~~~~~~~wlp~~L~~~g 223 (368)
T TIGR00903 176 FG---------------F--KD------A----VKEFGALAGRKDLWIIG-----AILGFGVALFDNLAIWLEAALRPAG 223 (368)
T ss_pred cc---------------h--HH------H----HHHHHHHHcChhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 00 0 00 0 01244566654433222 3455555667778889999998888
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 016673 318 FGSGAALYSSVITGIALCIAALISMAFVDKFGR 350 (385)
Q Consensus 318 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 350 (385)
++.. .+.......+.+.++ .++++||..|
T Consensus 224 ~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r 252 (368)
T TIGR00903 224 LEDI-AGDAVALAILAGLIG---VAVIPDRVAR 252 (368)
T ss_pred CChH-HHHHHHHHHHHHHHH---HHHhhHHhhh
Confidence 8754 555555555555554 4677777654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=207.06 Aligned_cols=246 Identities=13% Similarity=0.066 Sum_probs=181.5
Q ss_pred ccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHhhhhh
Q 016673 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-----VHISMLLLGRIFLGMGIGF 152 (385)
Q Consensus 78 ~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~r~l~G~~~g~ 152 (385)
+++|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.++..+.++..+++ ++++.+++.|++.|++ +.
T Consensus 65 ~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~ 143 (462)
T PRK15034 65 FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GA 143 (462)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HH
Confidence 47899999999999999999999999999999999999999999999999999987 8999999999999997 77
Q ss_pred hhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhcc-----c-----------cCCcchhHHHhhhHHHHHH
Q 016673 153 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE-----K-----------IHPWGWRLSLGLATVPATL 216 (385)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~-----~-----------~~~~~wr~~f~~~~~~~~~ 216 (385)
.++.....+++|+|+++||+++|+.....++|..+++++..... . .+..+||...++..++.++
T Consensus 144 ~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv 223 (462)
T PRK15034 144 NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAI 223 (462)
T ss_pred hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999997666666665544432111 0 0134588888887777766
Q ss_pred HHHhhcc-cccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHH
Q 016673 217 MFVGGLF-LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPA 295 (385)
Q Consensus 217 ~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (385)
..+..++ .++.|. .+.+ .....+.+|++..|... +.+
T Consensus 224 ~~i~~~~~~~~~~~---~~~~----------------------------------~~~~~~vlk~~~~Wlls-----lly 261 (462)
T PRK15034 224 ATIAAWSGMNDIAS---SRAS----------------------------------IADQLPVLQRLHLWLLS-----LLY 261 (462)
T ss_pred HHHHHHHhCCCccc---cccC----------------------------------HHHHHHHhCCCchhHHH-----HHH
Confidence 6555544 343321 0000 01122344444333222 245
Q ss_pred HHHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHH
Q 016673 296 FQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVT 367 (385)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 367 (385)
++.+..+..+..++|++.++ .++............+...+.++++|+++||+|+|+.+.++++.+.++...
T Consensus 262 ~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~ 332 (462)
T PRK15034 262 LATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSAL 332 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 56666677788889999877 333333333344456788889999999999999999998888777776644
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=216.33 Aligned_cols=243 Identities=16% Similarity=0.070 Sum_probs=172.9
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|+++|++.+.. ....
T Consensus 67 gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~ 145 (476)
T PLN00028 67 NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATF-VSCQ 145 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHH
Confidence 588999999999999999999999999999999999999999999999999999999999999999999988765 3456
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhcc----cc---CCcchhHHHhhhHHHHHHHHHhhcccc-cchhH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE----KI---HPWGWRLSLGLATVPATLMFVGGLFLP-ETPNS 230 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~----~~---~~~~wr~~f~~~~~~~~~~~~~~~~~~-e~~~~ 230 (385)
.++.|++|+++|++++++......+|..+++.+..... .. +..|||+.|++.+++.++..+..++++ +.|+
T Consensus 146 ~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~- 224 (476)
T PLN00028 146 YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD- 224 (476)
T ss_pred HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-
Confidence 78999999999999999998777777776655532221 11 124899999998888877665555544 3332
Q ss_pred HHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHH
Q 016673 231 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAP 310 (385)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (385)
++.++..+ ..+. +++.....+++.++++..+ .... ..+...........+.|
T Consensus 225 ----~~~~~~~~-------~~~~------------~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~p 276 (476)
T PLN00028 225 ----GNYRELKK-------SGTM------------PKDSFSKVLRYGVTNYRTW---ILAL--TYGYSFGVELTMDNIIA 276 (476)
T ss_pred ----CchhhHHh-------cCcc------------ccccHHHHHHHHHcCchhH---HHHH--HHHHHHHHHHHHHhHHH
Confidence 11000000 0000 0000001122333333222 2111 22222333344566778
Q ss_pred HHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 016673 311 VIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 351 (385)
Q Consensus 311 ~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r 351 (385)
.++.+ .|++..+++.......++.++++++.|+++||++||
T Consensus 277 ~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 277 EYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 87765 799999999999999999999999999999999865
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=213.92 Aligned_cols=256 Identities=18% Similarity=0.188 Sum_probs=191.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+...
T Consensus 25 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 104 (399)
T TIGR00893 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGII 104 (399)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~ 237 (385)
.++.|++|+++|++++++.+....+|..+++.+++... +..+||+.|++.++..++..+.. +..||+|+.... .+.
T Consensus 105 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 181 (399)
T TIGR00893 105 LIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL--IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKW-LTE 181 (399)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH--HhCCchHHHHHHHHHHHHHHHHhhheecCCCCcccc-CCH
Confidence 99999999999999999999999999999999965433 34589999998888777665554 445665531110 011
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-c
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-L 316 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (385)
++..+..+....+ .+.++.++..+.+.++.++++. . .... ...+...........+.|.++++ .
T Consensus 182 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~---~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (399)
T TIGR00893 182 EEKYIVVGGLLAE----------QQGKGPSTPKKYQIKELLKDRR---V-WGLA-LGQFLVNIGLGFFLTWFPTYLVQER 246 (399)
T ss_pred HHHhhcchhhccc----------cccccccCCCccchHHHhcCHH---H-HHHH-HHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 1100000000000 0000000111222334443322 2 2222 34444555566777788888876 8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 016673 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 352 (385)
Q Consensus 317 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~ 352 (385)
|.++.+.+.......++.+++.++.+++.||++||+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 247 GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999889999999999999999999999999999885
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=210.58 Aligned_cols=261 Identities=25% Similarity=0.368 Sum_probs=196.1
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++.+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++..+++|.+.++++|++.|++.+...+...
T Consensus 28 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 107 (352)
T PF07690_consen 28 GLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASN 107 (352)
T ss_dssp TTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccccccccc
Confidence 57999999999999999999999999999999999999999999999977777778888999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~ 237 (385)
+++.|++|+++|++++++.+....+|..++|.+++... +..+||+.|++.++..++..++. .+++++|+...++++.
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~--~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 185 (352)
T PF07690_consen 108 ALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI--SYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPK 185 (352)
T ss_dssp HHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SST
T ss_pred ccccccchhhhhhhccccccchhhhhhhcccchhhhhh--hccccccccccccchhhhhhhhHhhhhhhccccccccccc
Confidence 99999999999999999999999999999999965444 45689999999999888876642 4455443321111111
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcC-ChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHH-Hh
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKN-PFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF-QS 315 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 315 (385)
++. ++.++... .++.+.+++..+... ...+...........+.|.++ ++
T Consensus 186 ~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~ 236 (352)
T PF07690_consen 186 ESE------------------------SKKPKPLKPGFKSLFKNPVLWILL-----IAFFLFFFVFSGFSFFLPLYLQEV 236 (352)
T ss_dssp TTT--------------------------HHHCCCH-CTHHHHHHCCHHHH-----HHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred ccc------------------------cccccccccccccccccchhhhhh-----hhhhHHHHHHHHhhcccchhhhhc
Confidence 100 00111111 245555555443111 223333334556788888884 45
Q ss_pred cCCC-CchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHH
Q 016673 316 LGFG-SGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 316 ~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
+|++ ..+.+.......+..+++.++.+++.||+++|+..........+..+.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (352)
T PF07690_consen 237 LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLL 292 (352)
T ss_dssp HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 8888 688899999999999999999999999999877766666665555555443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=207.75 Aligned_cols=259 Identities=16% Similarity=0.082 Sum_probs=194.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-----HISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~r~l~G~~~g~~ 153 (385)
+.++.+.+++.+++.++..+++++.|+++||+|||++++.+.++..++.++..+.+ |++.+++.|+++|++.+..
T Consensus 30 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 109 (365)
T TIGR00900 30 TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFF 109 (365)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999888887 9999999999999999999
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccc--ccchhHH
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL--PETPNSL 231 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~--~e~~~~~ 231 (385)
.+...+++.|++|+++|++++++.+....+|..++|.+++... +..+||+.|++.++..++..+..+.+ ||+++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 186 (365)
T TIGR00900 110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY--ATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS- 186 (365)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-
Confidence 9999999999999999999999999999999999999965543 34589999988877666655444333 332210
Q ss_pred HhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHH-HhHH
Q 016673 232 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSIL-FYAP 310 (385)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 310 (385)
++++.++ + ..++.++.+++.++++..+..... .+.......... .+.|
T Consensus 187 -~~~~~~~------------------~-------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 235 (365)
T TIGR00900 187 -EIQALSN------------------A-------VLRDTREGIKFVLKNPLLRTLLLL-----ALLFNLVFAPAIVALFP 235 (365)
T ss_pred -cccccch------------------h-------HHHHHHhHHHHHHcCcHHHHHHHH-----HHHHHHHHHHHHHHHhH
Confidence 0000000 0 000111223344444433322221 222222222333 6778
Q ss_pred HHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 311 VIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 311 ~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
.+.++ +|.++.+.+.......++.+++.++.+++.||.+||+.+..+..+.+++...+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (365)
T TIGR00900 236 YVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT 297 (365)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh
Confidence 88887 89999999999999999999999999999999999998887766666666555544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=209.17 Aligned_cols=289 Identities=13% Similarity=0.175 Sum_probs=199.2
Q ss_pred HHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhh
Q 016673 26 FLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASY 105 (385)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~ 105 (385)
.+..+....+..+..+++....+.. .|.+.+++ ++++.+.++..+.+.+++.+++++.|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~--~p~i~~~~------------------~~s~~~~gl~~~~~~~g~~i~~~~~g~ 83 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDIL--LPQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGI 83 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445556666666554443 24444443 589999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHH
Q 016673 106 VTRSRGRRASIMVGSVSFFIGAILN---ACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTC 182 (385)
Q Consensus 106 l~d~~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 182 (385)
+.||+|||+++..+..+.+++++++ ..++|++.++++|+++|+|.|...+....++.|+.|+++|...+++.+..+.
T Consensus 84 l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~ 163 (438)
T PRK10133 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 9999999999999999999999886 4688999999999999999999999999999998878777778999999999
Q ss_pred HHHHHHHHHHHhccc-c--------------C---C------cchhHHHhhhH-HHHHHHHHh-hcccccchhHHHhcCC
Q 016673 183 LGILVANLINYGTEK-I--------------H---P------WGWRLSLGLAT-VPATLMFVG-GLFLPETPNSLVEQGK 236 (385)
Q Consensus 183 ~g~~i~~~~~~~~~~-~--------------~---~------~~wr~~f~~~~-~~~~~~~~~-~~~~~e~~~~~~~~~~ 236 (385)
+|..+++.++..... . + . .+||++|+... +..++..+. ....||.+. +++
T Consensus 164 ~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~ 239 (438)
T PRK10133 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNH 239 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccc
Confidence 999999988653220 0 0 0 25676775433 333333222 223454321 000
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHH-Hh
Q 016673 237 LDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF-QS 315 (385)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 315 (385)
.++ +..+...+.+++++++..+...+. .++..........|.+.++ ++
T Consensus 240 ~~~--------------------------~~~~~~~~~~~ll~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~l~~~ 288 (438)
T PRK10133 240 SDA--------------------------KQGSFSASLSRLARIRHWRWAVLA-----QFCYVGAQTACWSYLIRYAVEE 288 (438)
T ss_pred ccc--------------------------cccchhhhHHHHHhCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhh
Confidence 000 000001123344554443332221 2222233343445666664 54
Q ss_pred -cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHH
Q 016673 316 -LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTL 369 (385)
Q Consensus 316 -~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 369 (385)
.|+++.+++.......++.+++++..+++.||+++|+.+..+..+..+.+.+..
T Consensus 289 ~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~ 343 (438)
T PRK10133 289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA 343 (438)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999988877666655544433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=211.62 Aligned_cols=250 Identities=16% Similarity=0.143 Sum_probs=178.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV----HISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~ 154 (385)
++++.+.++..+.+.+++.+++++.|+++||+|||++++.+.++.+++.+.+++.+ +++.+++.|++.|++.+...
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 47899999999999999999999999999999999999999999999999888753 78889999999999999988
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHHHHH-HHHHHHHhccccCCcchhHHHhhhHHHHHHHHH-hhcccccchhHHH
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGIL-VANLINYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLV 232 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~ 232 (385)
+.....+.|++|+++|++++++.+.+..+|.. .+|+++..... ..+||+.|++.+++.++..+ ..+++||+|+...
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~ 216 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW--FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCG 216 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcC
Confidence 88888899999999999999999999999874 45554322222 23899999998877666544 4466788775321
Q ss_pred hcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhh-----hhccCCcchHHHHHhHHHHHHHccchHHHHH
Q 016673 233 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRN-----LFKKKNRPQLVIGALGIPAFQQLTGMNSILF 307 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (385)
.+ +.++.. ++. ++ +. +.+++.+.+.++ .++++. .+... +..++.....+....
T Consensus 217 ~~-~~~~~~---~~~---~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-l~~~~~~~~~~~~~~ 274 (452)
T PRK11273 217 LP-PIEEYK---NDY---PD---DY-------NEKHEQELTAKQIFMQYVLPNKL----LWYIA-IANVFVYLLRYGILD 274 (452)
T ss_pred CC-Chhhhh---hcc---cc---cc-------ccccCCCccHHHHHHHHHHcChH----HHHHH-HHHHHHHHHHHHHHH
Confidence 11 111100 000 00 00 000000111222 222222 22122 233333334456778
Q ss_pred hHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccc--cchh
Q 016673 308 YAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKF--GRRA 352 (385)
Q Consensus 308 ~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~r~ 352 (385)
+.|.++++ .|++..+++.......++.+++.++.|+++||+ +||+
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~ 322 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 322 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 99999987 789988999888888999999999999999998 4444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-26 Score=205.61 Aligned_cols=266 Identities=16% Similarity=0.127 Sum_probs=186.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
|+++.+.+++.+.+.+++.+++++.|+++||+|||+.++++.++..++.+++++++ +++.+++.|+++|++.+ ..+..
T Consensus 33 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 111 (366)
T TIGR00886 33 GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASC 111 (366)
T ss_pred CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhH
Confidence 68999999999999999999999999999999999999999999999999999999 99999999999999865 45667
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhcccc--------CCcchhHHH-hhhHHHHHHH-HHhhcccccc
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI--------HPWGWRLSL-GLATVPATLM-FVGGLFLPET 227 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~--------~~~~wr~~f-~~~~~~~~~~-~~~~~~~~e~ 227 (385)
..++.|++|+++|++++++......+|..+++.++...... .+.+||+.| +..++...+. .+...+.+|+
T Consensus 112 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 112 MPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred HHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 88999999999999999999977777777776664332221 134799998 4434444333 3333445666
Q ss_pred hhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHH
Q 016673 228 PNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILF 307 (385)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (385)
|+.. ++.++.. ..+... . . . ++..++..+.++++..+...+ ..+...........
T Consensus 192 ~~~~---~~~~~~~-----~~~~~~-~-~----~------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 246 (366)
T TIGR00886 192 PPGK---PATGKLS-----FKGARW-S-V----G------TGALGDQLKVFRDRHTWILAL-----LYSVTFGSFLGVSS 246 (366)
T ss_pred Cccc---ccchhcc-----cccccc-c-c----c------chhHHHHHHHHhccchhhHHH-----HHHHHHHHHHHHHH
Confidence 5311 0000000 000000 0 0 0 000002233444433222221 22333334456677
Q ss_pred hHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHH
Q 016673 308 YAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 308 ~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
+.|.++++ +|+++.+++.......+..++++++.+++.||+|+|+.+..+......+..++..
T Consensus 247 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 310 (366)
T TIGR00886 247 IFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVL 310 (366)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHh
Confidence 78888876 8999999999999999999999999999999999988777776666665555544
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=206.70 Aligned_cols=252 Identities=17% Similarity=0.287 Sum_probs=207.2
Q ss_pred cccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhh
Q 016673 75 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGF 152 (385)
Q Consensus 75 ~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~G~~~g~ 152 (385)
++++++++++.+++.+.++.|+.+++++.|+++||+|-|+++..+.++.++++++...+. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 567899999999999999999999999999999999999999999999999999998865 456778999999999999
Q ss_pred hhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhc-ccccchhHH
Q 016673 153 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL-FLPETPNSL 231 (385)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~ 231 (385)
.+|+...+..+|.|++||++..++..++..+|.+++.++++.+-.. ..||+..|++.++.+++..++++ +..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~- 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK- 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-
Confidence 9999999999999999999999999999999999999886555543 36999999999999998877774 46677752
Q ss_pred HhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH---hcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHh
Q 016673 232 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARA---IKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 308 (385)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (385)
++... ++|.+.+.+.+.+++. .+.|++++++.+..+..+ +..++...+...+..|
T Consensus 223 --h~~is---------------~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~-----~~~f~~~~~~~~l~~y 280 (466)
T KOG2532|consen 223 --HPNIS---------------EKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIW-----ISAFGGNWGFYLLLTY 280 (466)
T ss_pred --CCCCC---------------HHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 11111 1111111111111111 356888888876544433 4666777778899999
Q ss_pred HHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 016673 309 APVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGR 350 (385)
Q Consensus 309 ~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 350 (385)
.|.|+++ +|++..+.|++.++..+...+..+++|.++||+.+
T Consensus 281 ~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 281 LPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred hhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998 99999999999999999999999999999999855
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=204.30 Aligned_cols=238 Identities=18% Similarity=0.202 Sum_probs=181.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.+.++.++..+++.+++.++++++|+++||+|||++++.+..+.+++++.+++++|++.++++|+++|++.+...+...
T Consensus 47 ~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~ 126 (413)
T PRK15403 47 NADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGY 126 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999887777778
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~ 237 (385)
.++.|++|+++|++++++......+|..+||++++... ++.+||+.|++.++..++..+.. +.+||+++. +++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~--~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~ 201 (413)
T PRK15403 127 VTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM--HFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVP 201 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCC
Confidence 88999999999999999999999999999999975543 34689999999888877766543 457886531 0000
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-c
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-L 316 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (385)
.+ . ++..++++++++++..+... ...+...........+.|.++++ .
T Consensus 202 ~~-------------~--------------~~~~~~~~~ll~~~~~~~~~-----l~~~~~~~~~~~~~~~~P~~l~~~~ 249 (413)
T PRK15403 202 FS-------------A--------------KSVLRDFRNVFRNRLFLTGA-----ATLSLSYIPMMSWVAVSPVILIDAG 249 (413)
T ss_pred CC-------------h--------------HHHHHHHHHHHcCHHHHHHH-----HHHHHHHHHHHHHHHhChHHHHHhc
Confidence 00 0 00011233444443322222 12233333445566678988887 6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Q 016673 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAF 353 (385)
Q Consensus 317 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~ 353 (385)
|+++.+.++.......+.+++..+.+.+.++..+++.
T Consensus 250 g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 250 GMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF 286 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence 9999999998888888888888888877655444333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=211.00 Aligned_cols=287 Identities=20% Similarity=0.180 Sum_probs=214.2
Q ss_pred cccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhh
Q 016673 75 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 75 ~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 154 (385)
.+.+|.+.....+..+++++|..+|++++|+++||+|||++++.++++..++.+..++++|++.+++.|+++|++.++..
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 46667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhc
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 234 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 234 (385)
.....++.|+.++++|+.+..+ ......+..+++..++.... +||+.+++..++.++.++..++.||+|+|+..+
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~ 264 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK 264 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence 9999999999999999999999 55555666666666444433 799999999999988877766677999999999
Q ss_pred CCHHHHHHHHHHHhCCC----chhHHHHHHHHHHH--HH-HHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHH
Q 016673 235 GKLDEARKVLEKVRGTA----NVDAEFSDLIDASN--AA-RAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILF 307 (385)
Q Consensus 235 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (385)
++.+++.+..++..+.+ +...........++ .. .+.+..+.++++.+..+...+... ...+. ....+
T Consensus 265 g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~-~~~~~-----~~~~y 338 (521)
T KOG0255|consen 265 GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLL-FIWFV-----FSLVY 338 (521)
T ss_pred CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHH-HHHHH-----HhHHH
Confidence 99999999888875432 11111111111111 11 112244666676654333333222 12211 11122
Q ss_pred h-HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHhhhc
Q 016673 308 Y-APVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSNMIQ 375 (385)
Q Consensus 308 ~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 375 (385)
+ ++......|. .........+.....+....+...|+.|||.....+..+..++++..++.....
T Consensus 339 ~gl~~~~~~lg~---~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (521)
T KOG0255|consen 339 YGLSLNVSGLGG---NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL 404 (521)
T ss_pred HhhhhhhhhcCc---hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 2 1112222333 235556666668888888889999999999999999999999999988876543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-28 Score=208.52 Aligned_cols=274 Identities=18% Similarity=0.240 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhh
Q 016673 24 SYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGA 103 (385)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 103 (385)
...++.++++++.+.+...|...+..+. +.. ++++|++++..|++++.+.+.+.+++|+.
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~--~~v------------------~~~fni~~s~~Gll~~vf~v~~~i~sPl~ 88 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVL--KEV------------------QTYFNISDSELGLLQTVFIVVFMIASPLF 88 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhh--HHH------------------HHhcCCCchhccchhHHHHHHHHHHHHHH
Confidence 3455667777888888888988866542 222 44558999999999999999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHH
Q 016673 104 SYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCL 183 (385)
Q Consensus 104 g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 183 (385)
|+++|||.||+++.+|..++.++.+.+++++.+|++.++|.+.|+|.+...++.+++++|.+|.++|++++++++.+..+
T Consensus 89 gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipv 168 (493)
T KOG1330|consen 89 GYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPV 168 (493)
T ss_pred HHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhc-ccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHH
Q 016673 184 GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL-FLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLID 262 (385)
Q Consensus 184 g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (385)
|..+|.+.+......+. .|||.|+..+++.++..++.+ +.+|+++. ..++.. +.+
T Consensus 169 GsglG~vvgs~va~~~~-~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~-------~~~----------- 224 (493)
T KOG1330|consen 169 GSGLGYVVGSVVASLTF-WWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVD-------GEN----------- 224 (493)
T ss_pred ccceeEEeeeeeccCcc-ceEEEEEeehHHHHHHHHHHHhhccCcccc-----cccccc-------cCC-----------
Confidence 99999999655444443 399999999999998877764 45665431 111100 000
Q ss_pred HHHHHHHhcCCh---hhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHH----HhcCCCCchHHHHHHHHHHHHH
Q 016673 263 ASNAARAIKNPF---RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF----QSLGFGSGAALYSSVITGIALC 335 (385)
Q Consensus 263 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~s~~~~~~~~~~~~~~~~ 335 (385)
+..+.....+ +.+.+.+..+...+... ...+.. ..+.++.|.+. +-.|++..+..++..+...++.
T Consensus 225 --~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~-a~~fv~----Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~ 297 (493)
T KOG1330|consen 225 --KMVKPFTSVWKDLKVLAKIKVFVLSSLGII-AAQFVI----GSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGS 297 (493)
T ss_pred --cCCCCccchHHHHHHHHccCceeeehHHHH-HHHHhc----cccchhhhhHHHHHHHHhCCccccchhhhhHHHhhch
Confidence 0000001112 22223333333333322 222222 23344444433 3357777777888888899999
Q ss_pred HHHHHHHHhhccc
Q 016673 336 IAALISMAFVDKF 348 (385)
Q Consensus 336 ~~~~~~g~l~d~~ 348 (385)
+|.+.+|.++||+
T Consensus 298 lGvl~Ggiisd~~ 310 (493)
T KOG1330|consen 298 LGVLFGGIISDKL 310 (493)
T ss_pred hhheehHHHHHHH
Confidence 9999999999994
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=209.57 Aligned_cols=308 Identities=16% Similarity=0.190 Sum_probs=215.3
Q ss_pred HHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcc
Q 016673 33 AAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR 112 (385)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Gr 112 (385)
++++.++..++...+++. +|.+.+++ |.++.+.+++.+.+.++..++.+++|+++||+||
T Consensus 15 ~~~~~~~~~~~~~~~~~~--~p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 74 (471)
T PRK10504 15 VAFGFFMQSLDTTIVNTA--LPSMAQSL------------------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGV 74 (471)
T ss_pred HHHHHHHHHHhHHHHHHH--HHHHHHHh------------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344556666676665543 35555554 5789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 016673 113 RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN 192 (385)
Q Consensus 113 r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 192 (385)
|++++.+..+.+++.+.++++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.++
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 75 RNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HhccccCCcchhHHHhhhHHHHHHHHHhhc-ccccchhHHHhcCCHHHHHHHHH---------HHhCCCc--hhH-HHHH
Q 016673 193 YGTEKIHPWGWRLSLGLATVPATLMFVGGL-FLPETPNSLVEQGKLDEARKVLE---------KVRGTAN--VDA-EFSD 259 (385)
Q Consensus 193 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~-~~~~ 259 (385)
+... ++.+||+.|.+......+..+... ..|+.+. ++.+.+....... ...+... ... ....
T Consensus 155 g~l~--~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (471)
T PRK10504 155 GLLV--EYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAG 229 (471)
T ss_pred HHHH--hhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHH
Confidence 5444 346899999988777666555443 3454332 1112221111000 0001000 000 0000
Q ss_pred --------HHHHHHHHHHhcCC--hhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHH
Q 016673 260 --------LIDASNAARAIKNP--FRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSV 328 (385)
Q Consensus 260 --------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~ 328 (385)
......+++..+++ ..++++++...... ...++..........+.|++++. .|.++.++++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 304 (471)
T PRK10504 230 LVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGL-----AGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMI 304 (471)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 00000001111111 11244444332222 22333334455566778988886 8999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHH
Q 016673 329 ITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 329 ~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
...++.+++.++.+++.||+|||+.+..+..+.++...++..
T Consensus 305 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 346 (471)
T PRK10504 305 PMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML 346 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh
Confidence 989999999999999999999999998888877777665554
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=206.66 Aligned_cols=296 Identities=16% Similarity=0.140 Sum_probs=217.3
Q ss_pred HHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 016673 27 LIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYV 106 (385)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l 106 (385)
+.+...+++..+....|...++..... ...++.+....+.+.+.++++++++++.++++.+
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~-------------------g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L 104 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLS-------------------GLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLL 104 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHc-------------------CCccccchhhhhhhhHHHHHHHHHHHHHhhHHHH
Confidence 344445555566666676665443211 1233446788999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHH
Q 016673 107 TRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGIL 186 (385)
Q Consensus 107 ~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 186 (385)
.||++..+.+....+.+++.+++....+|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|++
T Consensus 105 ~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i 184 (495)
T KOG2533|consen 105 GDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNI 184 (495)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhH
Confidence 99999999999999999988888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc----cCCcchhHHHhhhHHHHHHHHHhh-cccccchhHH--HhcCCHHHHHHHHHHHhCCCchhHHHHH
Q 016673 187 VANLINYGTEK----IHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSL--VEQGKLDEARKVLEKVRGTANVDAEFSD 259 (385)
Q Consensus 187 i~~~~~~~~~~----~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (385)
+|+++++.... ....||||.|++.+++.++..+.. +++|+.|... .++++.+-..+..+......
T Consensus 185 ~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~-------- 256 (495)
T KOG2533|consen 185 FGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGG-------- 256 (495)
T ss_pred HHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCC--------
Confidence 99999877443 223689999999999988876655 5689988621 11111110000000000000
Q ss_pred HHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHH
Q 016673 260 LIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAA 338 (385)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~ 338 (385)
..++.++..+++.++.+..+... +..++.....+.+.+|+|.++.+ .|+|..++..+.++..++++++.
T Consensus 257 -----~~~~~~~~~~~~a~~dp~vw~~~-----l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~ 326 (495)
T KOG2533|consen 257 -----IENKFKWKGFKEALKDPGVWPFS-----LCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGL 326 (495)
T ss_pred -----cccccCHHHHHHHHhchhHHHHH-----HHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHH
Confidence 00001112234444444333322 35566666678899999999999 67999999999999999999999
Q ss_pred HHHHHhhccc----cchhHHHHhhH
Q 016673 339 LISMAFVDKF----GRRAFFLEAGT 359 (385)
Q Consensus 339 ~~~g~l~d~~----~~r~~~~~~~~ 359 (385)
+++|.++||. .+|........
T Consensus 327 i~ag~lsdr~~~~~~~~~~~~~~~~ 351 (495)
T KOG2533|consen 327 ILAGYLSDRLKTIFARRLLFIVFLC 351 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999994 45544444333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=203.60 Aligned_cols=255 Identities=16% Similarity=0.172 Sum_probs=193.1
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++.+.++..+.+.++..+++++.|+++||+|||+.++.+.++..++.+.+..++|++.+++.|+++|++.+...+...
T Consensus 34 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 113 (392)
T PRK10473 34 NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAF 113 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~ 237 (385)
+++.|++|+++|+++.++.+....+|..++|.++.... +..+||+.|++.++..++..+.. +++||+++.. +++.
T Consensus 114 ~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~--~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~ 189 (392)
T PRK10473 114 AILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM--LKFPWQSLFYTMAAMGILVLLLSLFILKETRPAR--APAA 189 (392)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc--cCCc
Confidence 99999999999999999999999999999999965433 34589999998887776665543 4567654210 0000
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-c
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-L 316 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (385)
++ . .+..++.++++........ .............+.|.+.++ .
T Consensus 190 ~~-------------------~-----------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 234 (392)
T PRK10473 190 SS-------------------K-----------PRENSESLLNRFFLSRLVI-----TTLSVTVILTFVNTSPVLLMEQM 234 (392)
T ss_pred cc-------------------h-----------HHHHHHHHhCHHHHHHHHH-----HHHHHHHHHHHHHhCHHHHHHHc
Confidence 00 0 0001122222221111111 111111222344455666654 8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHh
Q 016673 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSN 372 (385)
Q Consensus 317 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~ 372 (385)
|+++.+.+......+++.+++.++.+++.||++||+.+..+..+..++.+++....
T Consensus 235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 290 (392)
T PRK10473 235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP 290 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988999999999999999999999999999999998888877777666665543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=204.03 Aligned_cols=249 Identities=23% Similarity=0.341 Sum_probs=182.0
Q ss_pred CchHHHHHHHH-----HHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHH
Q 016673 81 DNQVLTLFTSS-----LYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS--------MLLLGRIFLG 147 (385)
Q Consensus 81 ~~~~~~~~~s~-----~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~r~l~G 147 (385)
++++.+...+. ..++..+++++.|+++||+|||++++.+.++..++.++++++++++ .++++|+++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 107 (394)
T TIGR00883 28 GDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQG 107 (394)
T ss_pred CChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHH
Confidence 34455544432 3344457899999999999999999999999999999999998875 4788999999
Q ss_pred hhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccc------cCCcchhHHHhhhHHHHHHHHHhh
Q 016673 148 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK------IHPWGWRLSLGLATVPATLMFVGG 221 (385)
Q Consensus 148 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~ 221 (385)
++.+...+....++.|++|+++|++..+..+.+..+|..+++.++..... .+.++||+.|++.++..++.....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 187 (394)
T TIGR00883 108 FSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLR 187 (394)
T ss_pred hhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987543321 134689999998777766655555
Q ss_pred cccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccc
Q 016673 222 LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTG 301 (385)
Q Consensus 222 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (385)
...||+|++..++++ +++.+.+.++.++++.+ ...... ...+.....
T Consensus 188 ~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~ 234 (394)
T TIGR00883 188 RNLEETPVFEKAQEK------------------------------HKKKRGPIRETLTKHRK-PFLLGL--GLVIATTTT 234 (394)
T ss_pred HhcCCChhHHHHHhc------------------------------cccccCCHHHHHHhchH-HHHHHH--HHHHHHHHH
Confidence 556776542211100 01112234444443321 122221 233334444
Q ss_pred hHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHH
Q 016673 302 MNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMI 362 (385)
Q Consensus 302 ~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~ 362 (385)
......+.|.+.++ .|.++.+.+.......+..+++.++.+++.||++||+.+..+..+..
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 296 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAA 296 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 55667788888855 88999999999999999999999999999999999987765544433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=200.21 Aligned_cols=270 Identities=15% Similarity=0.103 Sum_probs=193.0
Q ss_pred HHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcch
Q 016673 34 AMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRR 113 (385)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr 113 (385)
.++.++.+.+....++.. |.+.+++ |.+..+.|++.+.+.+++.+++++.|+++||+|||
T Consensus 12 ~~~~~~~~~~~~~~~~~l--p~~~~~~------------------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k 71 (381)
T PRK03633 12 LCGLLLLTLAIAVLNTLV--PLWLAQE------------------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFN 71 (381)
T ss_pred HHHHHHHHHhhhhHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345556666666655442 5555554 57899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 016673 114 ASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY 193 (385)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 193 (385)
+++..+.++.+++.+.+++++|++.++++|+++|++.+...+...+.+.+..++++|+++++....+..+|..+||.++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 151 (381)
T PRK03633 72 RSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVS 151 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999999965
Q ss_pred hccccCCcchhHHHhhhHHHHHHHH-HhhcccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcC
Q 016673 194 GTEKIHPWGWRLSLGLATVPATLMF-VGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKN 272 (385)
Q Consensus 194 ~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (385)
..... ..|...+ ..+....... +.....+|++. ++ +.+.
T Consensus 152 ~l~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~--------------------------------~~~~ 191 (381)
T PRK03633 152 KVSTE--LMSVLPW-VTGLVLAAILPLLFTRILNQQA-----EN--------------------------------HDST 191 (381)
T ss_pred ccccc--ccchHHH-HHHHHHHHHHHHHHhcccCCCC-----CC--------------------------------CCCC
Confidence 44322 1122222 2222111111 11111222110 00 0011
Q ss_pred ChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 016673 273 PFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRA 352 (385)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~ 352 (385)
+.++.++++..+.... ..+...........+.|.+.++.|.++.+.+.......++.+++++..+++.||+++|+
T Consensus 192 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 266 (381)
T PRK03633 192 SIWPMLKLRQARLGVN-----GCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL 266 (381)
T ss_pred CHHHHHHhcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH
Confidence 2233344433222111 11122222344556789998888999889999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHH
Q 016673 353 FFLEAGTEMIIYMVTT 368 (385)
Q Consensus 353 ~~~~~~~~~~~~~~~~ 368 (385)
.+..+.....++...+
T Consensus 267 ~l~~~~~~~~~~~~~~ 282 (381)
T PRK03633 267 VLRVQVFVVILGSIAM 282 (381)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877766666655443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-27 Score=206.33 Aligned_cols=333 Identities=23% Similarity=0.262 Sum_probs=236.4
Q ss_pred hhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhh
Q 016673 22 ITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTF 101 (385)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 101 (385)
..|+....+.++.++.|.++||...++.+. ++.+..+..-.++. =|.++...+.+..+.++|.++||+
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt---~il~~lY~~~~~~~---------g~~ps~i~~~Vn~~A~vGti~GQl 102 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVT---KILGYLYYHGDESG---------GHYPSGVLALVNAAALVGTIFGQL 102 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHH---HHHHHHhcCCCCCC---------CcCCchHHHHHHHHHHHHHHHHHH
Confidence 378889999999999999999999998874 33333332211111 246788889999999999999999
Q ss_pred hhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHH
Q 016673 102 GASYVTRSRGRRASIMVGSVSFFIGAILNACAV-------HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVN 174 (385)
Q Consensus 102 ~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 174 (385)
+.|++.||+|||+++...+++..+++++++++. -.+++...|++.|+|.|+-+|...++.+|...+++||...
T Consensus 103 ~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~i 182 (538)
T KOG0252|consen 103 FFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFI 182 (538)
T ss_pred HHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccccee
Confidence 999999999999999999999999999888753 2467888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc-----C--------CcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcC-CHHHH
Q 016673 175 QLFQLTTCLGILVANLINYGTEKI-----H--------PWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQG-KLDEA 240 (385)
Q Consensus 175 ~~~~~~~~~g~~i~~~~~~~~~~~-----~--------~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~ 240 (385)
+...+..+.|.+.|.+++...... . +.-||..+.+.+++++..+...+.+||+++|..... +.+++
T Consensus 183 aavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a 262 (538)
T KOG0252|consen 183 AAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQA 262 (538)
T ss_pred EEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhh
Confidence 998888888888777765332211 0 124999999999999998888888999999874332 22222
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCC---hhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcC
Q 016673 241 RKVLEKVRGTANVDAEFSDLIDASNAARAIKNP---FRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLG 317 (385)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 317 (385)
. ++..+....+.+.+ ++.....+..+++ +...+..+ .-+.++... ..+|..-..++....+...++++.|
T Consensus 263 ~---~d~~k~~~~~~~~~--~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~-~~WFllDiafy~~nL~~s~I~~~ig 335 (538)
T KOG0252|consen 263 A---GDMKKVLSVDIEAE--STAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTA-GTWFLLDIAFYGQNLFQSVIFSAIG 335 (538)
T ss_pred h---hccccccccccchh--hccccCCCCcccccchHHHHHHHH-HHHHHHHHH-HHHHhhhhhhhccccHHHHHHHhhc
Confidence 2 11111111100000 0000000111111 22222222 112233333 6788888888889999999999888
Q ss_pred CCCchHHH--------H-HHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHhh
Q 016673 318 FGSGAALY--------S-SVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSNM 373 (385)
Q Consensus 318 ~s~~~~~~--------~-~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~ 373 (385)
+.+.+.-. . ..+.....++|..+...++|++||++..+.+++++.+..+.++...+
T Consensus 336 ~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~ 400 (538)
T KOG0252|consen 336 VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN 400 (538)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc
Confidence 76554322 1 22223344446667778899999999999999999999998887665
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-27 Score=211.55 Aligned_cols=252 Identities=14% Similarity=0.123 Sum_probs=183.1
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++.++++++++++.+++.|++.|++.+...+...
T Consensus 26 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 105 (379)
T TIGR00881 26 GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCG 105 (379)
T ss_pred CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHH-HHHhccccCCcchhHHHhhhHHHHHHHHHh-hcccccchhHHHhcCC
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANL-INYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGK 236 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~-~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~ 236 (385)
+++.|++|+++|++++++.+.+..+|..+++. ++... .+..+||+.|++.+++.++..+. .++.||+|+....+++
T Consensus 106 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (379)
T TIGR00881 106 RTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGI--AELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPA 183 (379)
T ss_pred HHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHH--HhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCcc
Confidence 99999999999999999999999999999994 53332 23458999999888776665444 4556776542111110
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-
Q 016673 237 LDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS- 315 (385)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 315 (385)
.++.. ++.+.+. .++++..+..+...++.++++..+... +..+...........+.|.++++
T Consensus 184 ~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 246 (379)
T TIGR00881 184 EEMPN---------EEPDGDA---EKKEEELTKKQIFLQYVLLNKVLWYIS-----LGYVFVYVVRTGILDWSPLYLTQE 246 (379)
T ss_pred ccCcc---------ccccccc---ccccccccchHHHHHHHHhcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0000000 000000000011123333433322221 22333334455667788888866
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 016673 316 LGFGSGAALYSSVITGIALCIAALISMAFVDKFG 349 (385)
Q Consensus 316 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 349 (385)
.|+++.+.+.......++.+++.++.+++.||..
T Consensus 247 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 280 (379)
T TIGR00881 247 KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF 280 (379)
T ss_pred hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence 8999999999999999999999999999999863
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=203.77 Aligned_cols=249 Identities=18% Similarity=0.200 Sum_probs=191.0
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
|+++++.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+.+.+++|++.+++.|+++|++.+...+...
T Consensus 22 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 101 (377)
T PRK11102 22 GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVIN 101 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~ 237 (385)
+++.|++|+++|++++++.+....+|..++|.++.... +..+||+.|++.++..++..+.. ++.||+++... +++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 178 (377)
T PRK11102 102 ALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL--VWFSWHAIFWVLALAAILAAALVFFFIPETLPKER-RQPF 178 (377)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcChHHHHHHHHHHHHHHHHHHHHhCCccCcccc-cCCC
Confidence 99999999999999999999999999999999965443 34589999998887776665443 55676542100 0000
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-c
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-L 316 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (385)
+.+ +..+++++.++++... ... +..+...........+.|.++.+ .
T Consensus 179 --------------~~~--------------~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (377)
T PRK11102 179 --------------HLR--------------TTIRNFASLFRHKRVL---GYM--LASGFSFAGMFSFLTAGPFVYIELN 225 (377)
T ss_pred --------------ChH--------------HHHHHHHHHHcChHHH---HHH--HHHHHHHHHHHHHHHcCHHHHHHHh
Confidence 000 0001122334333221 111 12222333344455556666655 8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHH
Q 016673 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMII 363 (385)
Q Consensus 317 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~ 363 (385)
|+++.+.+.......++.+++.++.+++.||+|||+.+..+..+..+
T Consensus 226 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 272 (377)
T PRK11102 226 GVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFI 272 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877655433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=206.18 Aligned_cols=254 Identities=15% Similarity=0.117 Sum_probs=181.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA----VHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~ 154 (385)
|+++++.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.+..+.. ++++.+.+.|++.|++.+..+
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~ 136 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW 136 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcch
Confidence 4789999999999999999999999999999999999999999999999887764 467788899999999999999
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHH-hhcccccchhHHHh
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVE 233 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~ 233 (385)
+.....+.|++|+++|++++++.+.+..+|..+++.+...... .+.+||+.|++.++++++..+ ..+++||+|+....
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~ 215 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA-WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL 215 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence 9899999999999999999999999999999998877433221 234899999998888777544 44557887653210
Q ss_pred cCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCCh-hhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHH
Q 016673 234 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPF-RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 312 (385)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (385)
+ +.++.++ +...+.. ++ . +.+.+.++.+ +..++++..+... ...++.....+....+.|.+
T Consensus 216 ~-~~~~~~~-----~~~~~~~---~~---~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~ 277 (438)
T TIGR00712 216 P-PIEEYRN-----DYPDDYN---EK---A-EQELTAKEIFMQYVLPNKLLWYIA-----IANVFVYLLRYGVLDWSPTY 277 (438)
T ss_pred C-Cchhccc-----ccccccc---cc---c-ccccchHHHHHHHHccCchHHHHH-----HHHHHHHHHHHHHHHhHHHH
Confidence 0 0000000 0000000 00 0 0000000001 1223333222221 22223334445677789999
Q ss_pred HHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 016673 313 FQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 351 (385)
Q Consensus 313 ~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r 351 (385)
+++ .|+++.+++.......+..++++++.+++.||++++
T Consensus 278 l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 317 (438)
T TIGR00712 278 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG 317 (438)
T ss_pred HHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 987 799999999999999999999999999999999643
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=200.89 Aligned_cols=247 Identities=15% Similarity=0.143 Sum_probs=188.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++++.++..+++.++..++++++|+++||+|||+.+..+..+..++.+.++++++++.+++.|+++|++.+...+...
T Consensus 37 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 116 (401)
T PRK11043 37 QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQ 116 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 238 (385)
+++.|++|+++|++..+.......+|..++|.+++... +..+||+.|++.++..++..+..++++|+++. + +.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~ 190 (401)
T PRK11043 117 ALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL--NHFGWQAIFATLFAITLLLILPTLRLKPSKKA---R-KQS 190 (401)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc---c-ccc
Confidence 99999999999999999999889999999999965443 44689999998888777766655555554320 0 000
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCC
Q 016673 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGF 318 (385)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (385)
+ .+.++++.++++..+..... .............+.|.++++.|+
T Consensus 191 ~------------------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~g~ 235 (401)
T PRK11043 191 Q------------------------------DALTFKQLLKSKTYLGNVLI-----FAACSAAFFAWLTGSPFILEQMGY 235 (401)
T ss_pred h------------------------------HHHHHHHHHcChhHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHcCC
Confidence 0 00112333443332222211 111122234455678888888999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHH
Q 016673 319 GSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMV 366 (385)
Q Consensus 319 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 366 (385)
++.+.+.......++.+++.+..+++.||+++|+.........+++..
T Consensus 236 s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~ 283 (401)
T PRK11043 236 SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVI 283 (401)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 999999888888889999999999999999988876555444444433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=187.83 Aligned_cols=287 Identities=17% Similarity=0.192 Sum_probs=220.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.+.-+..+++...+.+..+++..+|.++|++|||+.+.+.....++...+.+.++|+..+++.|.+.|+|.|+ .|...
T Consensus 109 ~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~ 187 (528)
T KOG0253|consen 109 GPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDS 187 (528)
T ss_pred chhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 238 (385)
++-.|..|..+|...+-.. ..+.+|.+....+++... ...||||..+....+..+.....+++|||||+...+++++
T Consensus 188 ~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm--~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~ 264 (528)
T KOG0253|consen 188 AIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM--SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDY 264 (528)
T ss_pred HHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChH
Confidence 9999999999999877777 999999999999965443 3458999998888888888888888999999999999999
Q ss_pred HHHHHHHHHhCCCchh-------------HHHHHHHHHH---HHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccch
Q 016673 239 EARKVLEKVRGTANVD-------------AEFSDLIDAS---NAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGM 302 (385)
Q Consensus 239 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (385)
++.+.++++...+..+ +|.++....+ +..++......+++..+.++..++... .++.....+
T Consensus 265 kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~--iwfgnafsy 342 (528)
T KOG0253|consen 265 KALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWR--IWFGNAFSY 342 (528)
T ss_pred HHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHH--HHHhhHHHH
Confidence 9999998887655211 1111110011 112233445667777777776665544 333333334
Q ss_pred HHHHHhHHHHHHhc--------------------CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHH
Q 016673 303 NSILFYAPVIFQSL--------------------GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMI 362 (385)
Q Consensus 303 ~~~~~~~~~~~~~~--------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~ 362 (385)
+........+.+.. ..+..+-..-..+..+....|.++.++++||+|||+.+..+++++.
T Consensus 343 yg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~ 422 (528)
T KOG0253|consen 343 YGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFG 422 (528)
T ss_pred HHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHH
Confidence 44443333333321 1122223444566788999999999999999999999999998888
Q ss_pred HHHHHHHHH
Q 016673 363 IYMVTTLHS 371 (385)
Q Consensus 363 ~~~~~~~~~ 371 (385)
++.+++...
T Consensus 423 iflfll~~c 431 (528)
T KOG0253|consen 423 IFLFLLTTC 431 (528)
T ss_pred HHHHHHHHh
Confidence 887776654
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=197.07 Aligned_cols=283 Identities=13% Similarity=0.165 Sum_probs=203.1
Q ss_pred HHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh
Q 016673 31 MVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR 110 (385)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~ 110 (385)
.+++...+..|+..+..++.. |.+++++ ++++.+.|++.+.+.+++.+++++.|++.||+
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~--~~~~~~~------------------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~ 65 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMV--PQFQQAF------------------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL 65 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455677777777766553 5555555 58999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHH
Q 016673 111 GRRASIMVGSVSFFIGAILNAC---AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILV 187 (385)
Q Consensus 111 Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i 187 (385)
|||++++.+.++.+++.+++.. .+|++.+++.|++.|+|.|..++....++.+..|+++|++.+++.+...++|..+
T Consensus 66 G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~ 145 (410)
T TIGR00885 66 SYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII 145 (410)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988654 4689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccC------------------------CcchhHHHhhhHHHHHHHHHhhcc--cccchhHHHhcCCHHHHH
Q 016673 188 ANLINYGTEKIH------------------------PWGWRLSLGLATVPATLMFVGGLF--LPETPNSLVEQGKLDEAR 241 (385)
Q Consensus 188 ~~~~~~~~~~~~------------------------~~~wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~ 241 (385)
+|.++....... ..+||++|++.+++.++..+...+ .||.++ ++ ++
T Consensus 146 g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~-- 217 (410)
T TIGR00885 146 GMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-AK-- 217 (410)
T ss_pred HHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-cc--
Confidence 999875443211 136999998888776665444332 343211 00 00
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhc--CCC
Q 016673 242 KVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSL--GFG 319 (385)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s 319 (385)
+.+.+.+.++.++++..+... +..++..........+.+.+.++. +.+
T Consensus 218 -------------------------~~~~~~~~~~~~~~~~~~~~~-----l~~f~yvg~e~~~~s~l~~y~~~~~~~~~ 267 (410)
T TIGR00885 218 -------------------------QISFSASLSRLARIRHYREGV-----IAQFFYVGVQIMCWTFIIQYAVRLIPGMT 267 (410)
T ss_pred -------------------------cccchhhHHHHHhChhHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 000011122333433322222 223333333444556778787764 344
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 320 SGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
...++...........+|+++++++.||+++|+.+.++..+..+..++....
T Consensus 268 ~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~ 319 (410)
T TIGR00885 268 AGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA 319 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444556666667889999999999999999998887777777766666553
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=196.63 Aligned_cols=244 Identities=16% Similarity=0.129 Sum_probs=179.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++.+.+++.+.+.+++.+++++.|+++||+|||++++.+..+.+++++.++++.+. ++.|+++|++.+...|+..
T Consensus 34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~ 110 (393)
T PRK11195 34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKY 110 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999999999999999999888777664 7889999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 238 (385)
+++.|++|+++|++++++.+....+|.++||.+++..... .|+..+.+.+...++..+..+.+||+|+...+++ .+
T Consensus 111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~---~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~-~~ 186 (393)
T PRK11195 111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP---HAEAALAVCALIYLLAALFNLFIPRLGARRPGQS-WN 186 (393)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccC-CC
Confidence 9999999999999999999999999999999997665542 3777776666555545455566787653211000 00
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cC
Q 016673 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LG 317 (385)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g 317 (385)
+ .+ ..++. ++.++.+++++..+....... + .........+..|.++++ +|
T Consensus 187 ~-~~-------------~~~~~----------~~~~~~l~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~lg 237 (393)
T PRK11195 187 P-IA-------------LLRDF----------FHACRVLWRDKLGRFSLAGTT----L-FWGAGATLRFLVLAWAPVALG 237 (393)
T ss_pred H-HH-------------HHHHH----------HHHHHHHHhCchhHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHcC
Confidence 0 00 00000 011234444444333222211 1 112223344555666665 89
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhh
Q 016673 318 FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358 (385)
Q Consensus 318 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~ 358 (385)
.++.+.|......+++.+++++..+++.||.++|+.+..+.
T Consensus 238 ~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~ 278 (393)
T PRK11195 238 ITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI 278 (393)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 99999999999999999999999999999998887776664
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=196.58 Aligned_cols=245 Identities=19% Similarity=0.210 Sum_probs=177.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA--------VHISMLLLGRIFLGMGI 150 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~r~l~G~~~ 150 (385)
+.++.+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.+.+.++ .+++.+++.|+++|++.
T Consensus 47 g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 126 (399)
T PRK05122 47 GFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGE 126 (399)
T ss_pred CccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhH
Confidence 5789999999999999999999999999999999999999999988887766553 25778999999999999
Q ss_pred hhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhH
Q 016673 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNS 230 (385)
Q Consensus 151 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~ 230 (385)
+...+...+++.|+.|+++|++++++......+|..+++.++.... +..+||+.+++..+..++..+.....|++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~- 203 (399)
T PRK05122 127 SLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY--HWGGLAGLGLLIMLLALLGLLLARPRPAVPP- 203 (399)
T ss_pred HhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH--HcccHHHHHHHHHHHHHHHHHHHhcCCCCCC-
Confidence 9999999999999999999999999999999999999999965443 3568999888766665544433332333221
Q ss_pred HHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHH
Q 016673 231 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAP 310 (385)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (385)
++++. .++++.+++. +..... .......+.....+.|
T Consensus 204 --~~~~~----------------------------------~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~ 240 (399)
T PRK05122 204 --VKGER----------------------------------LPFRRVLGRV--WPYGMG-----LALASIGFGTIATFIT 240 (399)
T ss_pred --CCccc----------------------------------hhHHHHHHHH--HHHHHH-----HHHHHHHHHHHHHHHH
Confidence 00000 0011111100 001111 1111122344556677
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 311 VIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 311 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
.+.++.|.+ +.+.......++.+++.++.+++.||+++|+.+..+..+..++..++...
T Consensus 241 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 299 (399)
T PRK05122 241 LYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA 299 (399)
T ss_pred HHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 777776663 44566677888899999999999999999998888777777766655543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=195.26 Aligned_cols=242 Identities=14% Similarity=0.074 Sum_probs=173.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH---h-hhhHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---C-AVHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~---~-~~~~~~~~~~r~l~G~~~g~~~ 154 (385)
+.++++.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+.+. . .++++.+++.|+++|++.+...
T Consensus 44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~ 123 (402)
T TIGR00897 44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA 123 (402)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH
Confidence 57999999999999999999999999999999999999999999999877653 3 3578888999999999998888
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHHHH-HHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHH
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGI-LVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLV 232 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~ 232 (385)
+.....+.|++|+++|++++|+.+.+.++|. .++|+++... .+..||+..++.......+..+.. ++.+|.++..
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 200 (402)
T TIGR00897 124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA--IPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQ- 200 (402)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHHHHHHHhccCCCCCcc-
Confidence 8888889999999999999999999999997 5788885433 334566555444333322222222 3344432100
Q ss_pred hcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHH
Q 016673 233 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 312 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (385)
++++.++ .+ +.++.++++++++..+.. . ...++..........+.|.+
T Consensus 201 ~~~~~~~-----------------~~----------~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~p~~ 248 (402)
T TIGR00897 201 HMQTREK-----------------FS----------ELGKAATILFTNPNVLLG---G--MVRIINTIGLFGFAVFLPMF 248 (402)
T ss_pred cccCCcc-----------------hh----------hHHHHHHHHHcChhHHHH---H--HHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00 000112334444332221 1 22333444556677889999
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH
Q 016673 313 FQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL 355 (385)
Q Consensus 313 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~ 355 (385)
.++.|++..+.+.......++.+++.+..|+++||++||+.+.
T Consensus 249 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 249 VAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR 291 (402)
T ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 9889999999888888899999999999999999999887653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=193.54 Aligned_cols=244 Identities=14% Similarity=0.148 Sum_probs=174.1
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH---h-----hhhHHHHHHHHHHHHhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---C-----AVHISMLLLGRIFLGMGI 150 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~---~-----~~~~~~~~~~r~l~G~~~ 150 (385)
|.|+++.|++.+.+.+++.+++++.|+++||+|||++++.+.+...++.+... . .+|++.++++|+++|++.
T Consensus 47 g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 126 (392)
T PRK12382 47 GFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGE 126 (392)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999888777654332 1 358899999999999999
Q ss_pred hhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhH
Q 016673 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNS 230 (385)
Q Consensus 151 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~ 230 (385)
+...+...+++.|+.|+++|++++++.+.+...|..++|+++.... +..|||+.+.+..+..++........||.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (392)
T PRK12382 127 SQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH--SHFGFAALALTTMVLPLLAWAFNGTVRKVPAH 204 (392)
T ss_pred HHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999999999999999999999999999965443 34589987776555444333322223332210
Q ss_pred HHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHH
Q 016673 231 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAP 310 (385)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (385)
+++ +.+.++..+........ .............+.|
T Consensus 205 ---~~~----------------------------------~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~ 240 (392)
T PRK12382 205 ---AGE----------------------------------RPSLWSVVGLIWKPGLG-------LALQGVGFAVIGTFVS 240 (392)
T ss_pred ---ccc----------------------------------CchHHHHHHHHHHhHHH-------HHHHHHHHhHHHHHHH
Confidence 000 00011111100001111 1111122344556777
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHH
Q 016673 311 VIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 311 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
.++++.|++. .+......+++.+++++..+++.||+++|+.+..+..+..++.+++..
T Consensus 241 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 298 (392)
T PRK12382 241 LYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL 298 (392)
T ss_pred HHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH
Confidence 7877777653 456666777888999999999999999999888887777777666554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-25 Score=188.42 Aligned_cols=256 Identities=18% Similarity=0.184 Sum_probs=202.3
Q ss_pred ccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHhhhhh
Q 016673 76 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS---MLLLGRIFLGMGIGF 152 (385)
Q Consensus 76 ~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~r~l~G~~~g~ 152 (385)
+++++|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++..+-++..+++.+.+ ++++++++.|++ |.
T Consensus 42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-Ga 120 (417)
T COG2223 42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GA 120 (417)
T ss_pred cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cc
Confidence 44479999999999999999999999999999999999999999999999999999986554 999999999995 56
Q ss_pred hhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcc---hhHHHhhhHHHHHHHHHhh-cccccch
Q 016673 153 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG---WRLSLGLATVPATLMFVGG-LFLPETP 228 (385)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~---wr~~f~~~~~~~~~~~~~~-~~~~e~~ 228 (385)
.+.+....+++++||+++|.++|+.. ..++|..+...++..... ..+ ||....+..+..++..+.. +.+.|.|
T Consensus 121 sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~--~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p 197 (417)
T COG2223 121 SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV--AFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVP 197 (417)
T ss_pred eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 77889999999999999999999999 777887777666433332 225 9988888777777755554 4466665
Q ss_pred hHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHh
Q 016673 229 NSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 308 (385)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (385)
......++.. ..+++.+.+++..|... +.++..+.++..+..+
T Consensus 198 ~~r~~~~~~~--------------------------------~~~~~~v~~~~~~W~ls-----llY~~tFG~Fvgfs~~ 240 (417)
T COG2223 198 EHRASVKPQL--------------------------------PAQLKAVFSNKDTWLLS-----LLYFATFGGFVGFSAY 240 (417)
T ss_pred hhhccccccc--------------------------------hhHHHHHhcCcchHHHH-----HHHHHHHHHHHHHHHH
Confidence 3211110000 01233344443333322 3566667778889999
Q ss_pred HHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHh
Q 016673 309 APVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSN 372 (385)
Q Consensus 309 ~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~ 372 (385)
+|.|+++ +|.++.+++.......+.+.+.+..+|+++||+|.+|.+...+..+.++...+....
T Consensus 241 l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~ 305 (417)
T COG2223 241 LPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFL 305 (417)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccc
Confidence 9999987 999999999999999999999999999999999999999888888888888877664
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=211.61 Aligned_cols=279 Identities=14% Similarity=0.138 Sum_probs=197.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh------------------------
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV------------------------ 134 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~------------------------ 134 (385)
+++..+.|++.+.+.++++++.++.++++||+|||+.+.++.++.+++++++++.+
T Consensus 64 ~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~ 143 (633)
T TIGR00805 64 KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSF 143 (633)
T ss_pred CCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccc
Confidence 68999999999999999999999999999999999999999999999999988763
Q ss_pred ---------------------------hHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHH
Q 016673 135 ---------------------------HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILV 187 (385)
Q Consensus 135 ---------------------------~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i 187 (385)
.+..++++|+++|+|.+..++...+++.|++|+++|++++++.+.+..+|..+
T Consensus 144 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~l 223 (633)
T TIGR00805 144 LCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAF 223 (633)
T ss_pred cccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHH
Confidence 24567789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccC-Cc-------------------chhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHHHH
Q 016673 188 ANLINYGTEKIH-PW-------------------GWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKV 247 (385)
Q Consensus 188 ~~~~~~~~~~~~-~~-------------------~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 247 (385)
|+++++...... ++ +||..|++.+++.++..+.++++|++.+....+.+.++.++. ..
T Consensus 224 G~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~--~~ 301 (633)
T TIGR00805 224 GYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETE--KL 301 (633)
T ss_pred HHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhh--cc
Confidence 999976554321 10 377788888887777666566666543211000010000000 00
Q ss_pred hCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHH
Q 016673 248 RGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYS 326 (385)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~ 326 (385)
....+. ... ......++....++.+++++.. +... +..+........+..++|.++++ +|+++.+++.+
T Consensus 302 ~~~~~~--~~~---~~~~~~~~~~~~~~~Ll~n~~f----~~~~-l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l 371 (633)
T TIGR00805 302 EKSEDK--SRK---KNSDITKDFPKIIKRLLCNPIY----MLVI-LAQVIDSLAFNGYITFLPKYLENQYGISSAEANFL 371 (633)
T ss_pred cccccc--cch---hhhhhHHHHHHHHHHHHcCcHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 000000 000 0000011112234455555432 2222 34445555677788899999987 99999999998
Q ss_pred HHHHHH-HHHHHHHHHHHhhcccc--chhHHHHhhHHHHHHHHHHH
Q 016673 327 SVITGI-ALCIAALISMAFVDKFG--RRAFFLEAGTEMIIYMVTTL 369 (385)
Q Consensus 327 ~~~~~~-~~~~~~~~~g~l~d~~~--~r~~~~~~~~~~~~~~~~~~ 369 (385)
.....+ +.+++.+++|+++||++ .|+.+..+.+...++.++..
T Consensus 372 ~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 417 (633)
T TIGR00805 372 IGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCS 417 (633)
T ss_pred hhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHH
Confidence 887766 56889999999999998 45666666666666654433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=194.38 Aligned_cols=249 Identities=16% Similarity=0.160 Sum_probs=180.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV-GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+.++.+.|++.+.+.+...+.+++.|+++||+||||.++. +..+..++.+++++++|++.+++.|+++|.+.+...|..
T Consensus 29 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~ 108 (375)
T TIGR00899 29 RARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQL 108 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHH
Confidence 5799999999999999999999999999999999887654 566667778888999999999999999998888888888
Q ss_pred hHHhhhcCCCccchhH--HHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhc
Q 016673 158 PLYLSEMAPAKIRGAV--NQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQ 234 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~ 234 (385)
.++..|+.|+++|++. .+......++|..++|++++... +..+||+.|++.++..++..+.. +++||+|++..++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (375)
T TIGR00899 109 FALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA--LGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA 186 (375)
T ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc
Confidence 8899999888777754 57788888999999999965443 34689999999888777665554 4478866321000
Q ss_pred CCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHH
Q 016673 235 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 314 (385)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (385)
. + +.+.++.++++..+..... .+...........+.|.+++
T Consensus 187 ~---~-------------------------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 227 (375)
T TIGR00899 187 L---T-------------------------------RLEVRGLLASRDTRLLFVA-----CTLMWGCNILYIINMPLLII 227 (375)
T ss_pred c---C-------------------------------cchhhhhhcCcchHHHHHH-----HHHHHHHHHHHHhhhHHHHH
Confidence 0 0 0011122333322222211 11112222334456677765
Q ss_pred h-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHH
Q 016673 315 S-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTT 368 (385)
Q Consensus 315 ~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~ 368 (385)
+ .|.++.+.+..........+++.++.+++.||++||+.+..+.....+....+
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~ 282 (375)
T TIGR00899 228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGL 282 (375)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 5 89999988888877777888889999999999999998877766555544433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=201.40 Aligned_cols=251 Identities=16% Similarity=0.119 Sum_probs=174.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLL-GRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~r~l~G~~~g~~~~~~ 157 (385)
+.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..++++.++++++++.+++ .|+++|++.+...+..
T Consensus 50 g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~ 129 (455)
T TIGR00892 50 QATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPS 129 (455)
T ss_pred CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHH
Confidence 579999999999999999999999999999999999999999999999999999999998875 5799999998877777
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccc-ccchhHHHhcCC
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPNSLVEQGK 236 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~ 236 (385)
.+++.++++ ++|+++.++.+.+..+|..++|++++... +..|||+.|++.+++.++..+..+++ ++.+... +.+
T Consensus 130 ~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~--~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~--~~~ 204 (455)
T TIGR00892 130 LTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF--ESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQR--VSK 204 (455)
T ss_pred HHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccc--ccc
Confidence 888899985 78999999999999999999999854433 34589999999888776655444333 3222110 000
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHh-cCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh
Q 016673 237 LDEARKVLEKVRGTANVDAEFSDLIDASNAARAI-KNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS 315 (385)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (385)
.++. +........+.. .. ....++. +....+.++++..+ . .. ...+...........++|.+.++
T Consensus 205 ~~~~----~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~---~-~~-~~~~l~~~~~~~~~~~l~~~~~~ 270 (455)
T TIGR00892 205 SKSK----EGLPPDGSTKKL----SK-KSTAEKINRFLDFSLFTHRGFL---V-YL-SGNVIMFLGFFAPIIFLVPYAKD 270 (455)
T ss_pred cccc----ccCCCCCccccc----cc-cchhhhhhhhcchHHhcCchHH---H-HH-HHHHHHHHHccchHHHHHHHHHH
Confidence 0000 000000000000 00 0000000 00001233333222 1 11 22333333444556677888888
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016673 316 LGFGSGAALYSSVITGIALCIAALISMAFVDKF 348 (385)
Q Consensus 316 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 348 (385)
.|++..+++...+..+++.++++++.+++.||.
T Consensus 271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~ 303 (455)
T TIGR00892 271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK 303 (455)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999973
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=194.91 Aligned_cols=233 Identities=16% Similarity=0.225 Sum_probs=178.0
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.+.+.+++|++.+++.|++.|++.+...+...
T Consensus 39 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 118 (394)
T PRK11652 39 NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMAR 118 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHh-hcccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~ 237 (385)
.+..|.+++++|+++.+..+.+..+|..++|.+++... +..+||+.|++.++..++..+. .++.||+++.. ++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~--~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 193 (394)
T PRK11652 119 TLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT--TLFGWRACYLFLLLLGAGVTFSMARWMPETRPAD---ARR 193 (394)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHHHHHHHHHHHHhCCccCccc---cch
Confidence 89999999999999999999999999999999965443 3458999999887766654433 35567764210 000
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-c
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-L 316 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (385)
++ .++.+++.++++..+..... .+...........+.+.++++ +
T Consensus 194 ~~------------------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 238 (394)
T PRK11652 194 TR------------------------------VLASYRTLLSNRRFNCYLLM-----LIGTLAGIAVFEACSGVLMGAVL 238 (394)
T ss_pred hH------------------------------HHHHHHHHHcChHHHHHHHH-----HHHHHHHHHHHHHhChHHHHHHc
Confidence 00 01112333443332222221 112222334445556667777 8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 016673 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 351 (385)
Q Consensus 317 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r 351 (385)
|+++.+.+.......++.+++..+.+++.||.+++
T Consensus 239 g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 273 (394)
T PRK11652 239 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 273 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998989888888888889999999999998743
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=189.16 Aligned_cols=251 Identities=17% Similarity=0.200 Sum_probs=185.1
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
|+++++.+++.+.+.++..+++++.|+++||+|||+++.++.++..++.+.+ .+++.+.+++.|++.|++.+...+...
T Consensus 31 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~ 109 (355)
T TIGR00896 31 GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLP 109 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccch
Confidence 5899999999999999999999999999999999999999999988888877 778999999999999999999888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 238 (385)
.++.|++| ++|++++++.+....+|..+++.++.........+||+.|...++..++... .++|+.++. +++ +
T Consensus 110 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~~~~~~---~~~-~ 182 (355)
T TIGR00896 110 SLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIPQVRRR---VAA-N 182 (355)
T ss_pred HHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhhhhccc---cCC-C
Confidence 89999886 6899999999999999999999885544332223499988776654443322 223433210 000 0
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCC
Q 016673 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGF 318 (385)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (385)
++..+...++.++++..+.. . ...+.....+.....+.|.++++.|+
T Consensus 183 ----------------------------~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lp~~~~~~g~ 229 (355)
T TIGR00896 183 ----------------------------QTTTRLTPVRIWRSPLAWQV----T-VFFGLQSGLYYSLIGWLPAILISHGA 229 (355)
T ss_pred ----------------------------CCCCCCCCchhhcCHhHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 00001123334443322211 1 22233334455667788999988999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhccc-cchhHHHHhhHHHHHHHHHHHH
Q 016673 319 GSGAALYSSVITGIALCIAALISMAFVDKF-GRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 319 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
+..+.+...+...++.++++++.+++.||+ +||+.+..+..+.+++...+..
T Consensus 230 ~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 282 (355)
T TIGR00896 230 SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF 282 (355)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 4566666666666666555544
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=193.48 Aligned_cols=248 Identities=14% Similarity=0.099 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhh
Q 016673 84 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSE 163 (385)
Q Consensus 84 ~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~ 163 (385)
+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+++.++++++.+++.|++.|++.+ ..+....++.|
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 133 (408)
T PRK09874 55 WSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIAT 133 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999755 56777888999
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCHHHHHH
Q 016673 164 MAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKLDEARK 242 (385)
Q Consensus 164 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~ 242 (385)
+.|+++|+++.++......+|..++|.+++... +..+||+.|++.++..++..+.. +++||+++.. ++.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--- 205 (408)
T PRK09874 134 QVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA--DSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKKEM--- 205 (408)
T ss_pred hcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cchhh---
Confidence 999999999999999999999999999965443 34589999998888776665544 4456543210 00000
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCCCCc-
Q 016673 243 VLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSG- 321 (385)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~- 321 (385)
.+.++ ..+.++++........ ..............+.|.+..+.+.+..
T Consensus 206 ----------------------~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (408)
T PRK09874 206 ----------------------LHMRE----VVTSLKNPKLVLSLFV----TTLIIQVATGSIAPILTLYVRELAGNVSN 255 (408)
T ss_pred ----------------------hHHHH----HHHhCcCCchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 00000 0112222222111111 1111112223344556666666332222
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHH
Q 016673 322 ---AALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 322 ---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
..+......+++.+++.+..+++.||++||+.+..+.....++.+.+..
T Consensus 256 ~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 256 IAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Confidence 2345556667888889999999999999999888887776666555443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=188.53 Aligned_cols=232 Identities=25% Similarity=0.343 Sum_probs=198.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++.+.++..+...++..+++++.|+++||+|||+.+..+.++..++.+.....++++.++++|++.|++.+...+...
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 109 (352)
T cd06174 30 GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAA 109 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLD 238 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 238 (385)
+++.|++|+|+|++++++.+....+|..++|.++.... +..+||+.+++.++..++..+...+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 174 (352)
T cd06174 110 ALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA--ESLGWRWLFLILAILGLLLALLLLFLL------------- 174 (352)
T ss_pred HHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 99999999999999999999999999999999965544 334799999988887776655544332
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cC
Q 016673 239 EARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LG 317 (385)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g 317 (385)
+. ..... ...+...........+.|.+.++ .|
T Consensus 175 ---------------------------------------------~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (352)
T cd06174 175 ---------------------------------------------RL-LLLLA-LAFFLLSFGYYGLLTYLPLYLQEVLG 207 (352)
T ss_pred ---------------------------------------------HH-HHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 11 11111 34445555667778888888887 59
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhccccchh-HHHHhhHHHHHHHHHHHHHh
Q 016673 318 FGSGAALYSSVITGIALCIAALISMAFVDKFGRRA-FFLEAGTEMIIYMVTTLHSN 372 (385)
Q Consensus 318 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~-~~~~~~~~~~~~~~~~~~~~ 372 (385)
.+..+.+.......++.+++.++.+++.||++||+ .+..+..+..++.+.+....
T Consensus 208 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 263 (352)
T cd06174 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP 263 (352)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999 88888888888877776544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=197.88 Aligned_cols=254 Identities=13% Similarity=0.045 Sum_probs=188.7
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHhhhhhhh
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC-----AVHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~ 154 (385)
.++.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+..+. .++++.+++.|+++|++.+...
T Consensus 49 ~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 128 (417)
T PRK10489 49 GSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGV 128 (417)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999988888777665542 5678899999999999999888
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhc
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 234 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 234 (385)
+...+++.|+.|+++|+++.++......+|..+||.+++.... ..+|++.|++.++..++..+..+.+||+++.. +
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~ 204 (417)
T PRK10489 129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA--AGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--Q 204 (417)
T ss_pred HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--c
Confidence 8999999999999999999999999999999999999655443 34799999888777776666666677654311 0
Q ss_pred CCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHH
Q 016673 235 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 314 (385)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (385)
++ ++ ..+ +.++.++..++++..+...+. . +.... ......+.|.+.+
T Consensus 205 ~~-~~----------------~~~----------~~~~~~~~~~~~~~~~~~~~~----~-~~~~~-~~~~~~~~p~~~~ 251 (417)
T PRK10489 205 PR-EH----------------PLR----------SLLAGFRFLLASPVVGGIALL----G-GLLTM-ASAVRVLYPALAD 251 (417)
T ss_pred cc-cc----------------chH----------HHHHHHHHHHcChHHHHHHHH----H-HHHHH-HHhHHHhhHHHHH
Confidence 00 00 000 001112233333322222211 1 11111 2345667888888
Q ss_pred h-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHH
Q 016673 315 S-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 315 ~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
+ .|.++.+.+.+....+++.+++.++.+++.||.++++.+..+..+..++.+++..
T Consensus 252 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T PRK10489 252 EVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL 308 (417)
T ss_pred hccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc
Confidence 8 8999999999999999999999999999999987777777777776666665543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-23 Score=191.34 Aligned_cols=251 Identities=16% Similarity=0.178 Sum_probs=175.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh-----cchHH-HHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-----GRRAS-IMVGSVSFFIGAILNACA---VHISMLLLGRIFLGMG 149 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~-----Grr~~-~~~~~~~~~i~~~~~~~~---~~~~~~~~~r~l~G~~ 149 (385)
+.+.++++.+ +.....+ ++.+++|+++||+ |||+. ++.+.+..+++...+++. ++++.+.+.+++.|++
T Consensus 43 g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~ 120 (491)
T PRK11010 43 NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFC 120 (491)
T ss_pred CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 4688888886 3333333 6899999999999 99986 667777777777777764 4788899999999999
Q ss_pred hhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchh
Q 016673 150 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPN 229 (385)
Q Consensus 150 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~ 229 (385)
.+...+...+++.|++|+++|+++.++...+..+|.++++.++..... ...|||..|++.++..++..+..++.||+++
T Consensus 121 ~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~-~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~ 199 (491)
T PRK11010 121 SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD-RYLGWQGMYWLMAALLIPCIIATLLAPEPTD 199 (491)
T ss_pred HHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999988544332 1358999999988877776665556787643
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhH
Q 016673 230 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 309 (385)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (385)
.. ++.++ . +++...++++.++++..+...... +...........+.
T Consensus 200 ~~---~~~~~----------------~----------~~~~~~~l~~~~~~~~~~~~ll~~-----~l~~~~~~~~~~~~ 245 (491)
T PRK11010 200 TI---PVPKT----------------L----------EQAVVAPLRDFFGRNNAWLILLLI-----VLYKLGDAFAMSLT 245 (491)
T ss_pred cc---ccccc----------------h----------hhhHHHHHHHHHcCcCHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 10 00000 0 000011244455443322222211 11112223334445
Q ss_pred HHHH-HhcCCCCchHHHHHH-HHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHH
Q 016673 310 PVIF-QSLGFGSGAALYSSV-ITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMV 366 (385)
Q Consensus 310 ~~~~-~~~g~s~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 366 (385)
+.++ ++.|++..+.+.... ...++.+++.++.|+++||+++|+.+.++.++.++..+
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l 304 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNA 304 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5555 458999999999874 55679999999999999999998877766655555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-23 Score=184.31 Aligned_cols=259 Identities=14% Similarity=0.132 Sum_probs=184.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh-----cchHH-HHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-----GRRAS-IMVGSVSFFIGAILNACA---VHISMLLLGRIFLGMG 149 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~-----Grr~~-~~~~~~~~~i~~~~~~~~---~~~~~~~~~r~l~G~~ 149 (385)
++|.++.++..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++....++. .+.+.+....++.+++
T Consensus 19 g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~ 96 (356)
T TIGR00901 19 NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFF 96 (356)
T ss_pred CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 5899999999766 444444 99999999998 89997 467777777777777776 4666777788888998
Q ss_pred hhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCC------cchhHHHhhhHHHHHHHHHhhcc
Q 016673 150 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP------WGWRLSLGLATVPATLMFVGGLF 223 (385)
Q Consensus 150 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~------~~wr~~f~~~~~~~~~~~~~~~~ 223 (385)
.+...++..+++.|++|+|+|+++.++...+..+|.++++.++........ ++||..|++.++..++..+..++
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 97 SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999644332211 23999999988877776555443
Q ss_pred -cccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccch
Q 016673 224 -LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGM 302 (385)
Q Consensus 224 -~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (385)
.||+++. +++.++ + .++.+++++++++++..+....... ..+......
T Consensus 177 ~~~e~~~~---~~~~~~-------------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 225 (356)
T TIGR00901 177 LAKEPQED---ASVPKP-------------------L-------TQAVLKPIREFFQRKNMIQALLLLL--LIVLYKLGD 225 (356)
T ss_pred hccCCCcc---cccchh-------------------H-------HHHHHHHHHHHHHhcCchHHHHHHH--HHHHHHHHH
Confidence 4664220 000000 0 0001112444555444333333322 223334445
Q ss_pred HHHHHhHHHHHHhcCCCCchHHHHHHHHH-HHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHH
Q 016673 303 NSILFYAPVIFQSLGFGSGAALYSSVITG-IALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 303 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
.....+.|.++++.|+++.+.+......+ +..+++.++++++.||+|||+.+..+.++.++...++..
T Consensus 226 ~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 294 (356)
T TIGR00901 226 SAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVW 294 (356)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888889999999888877666 577899999999999999999888888777776665544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=186.06 Aligned_cols=251 Identities=8% Similarity=0.037 Sum_probs=183.9
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+++..+.|++.+.+.++..+++++.|+++||+|||++++++.++..++.+..++++|++.++++|.+.|.+.+...+...
T Consensus 39 g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 118 (395)
T PRK10054 39 SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLK 118 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999988888888899
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~ 237 (385)
++..|..|+++|++++++.....++|..++|++++.... .+|+..|++.++..++..+.. +++||+++. ++.
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~---~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~----~~~ 191 (395)
T PRK10054 119 AWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM---QSINLPFWLAAICSAFPLVFIQIWVQRSEKA----IAT 191 (395)
T ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcHHHHHHHHHHHHHHHHHHHHhccccc----ccc
Confidence 999999999999999999999999999999999765542 479999998887776665444 345554310 000
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHH---
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ--- 314 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 314 (385)
++ ++ ..+.++.++++..+......+ +..........+.+.+..
T Consensus 192 ~~-------------------------~~----~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~ 237 (395)
T PRK10054 192 ET-------------------------GS----VWSPSVLLQDKALLWFTCSGF-----LASFVSGAFASCISQYVMVVA 237 (395)
T ss_pred ch-------------------------hh----hhhhhhhccCceehHHHHHHH-----HHHHHHHHhhhhHHHHHHHhc
Confidence 00 00 000133444444333332222 111112222223344432
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHH
Q 016673 315 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 315 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
+.+.+....+.......+.........+++.||.++|+.+..+..+..++...+..
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 293 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIF 293 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 34555566677777777777777888899999999999888887777776665543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=182.28 Aligned_cols=252 Identities=12% Similarity=0.107 Sum_probs=184.1
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
++++.+.|+..+...+...+.+++.|+++||+|||+++..+..+..++.+.+.++++++.+++.|+++|++.+...+...
T Consensus 42 g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~ 121 (400)
T PRK11646 42 GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRT 121 (400)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~ 237 (385)
+++.|++|+++|++++++......+|..+||.+++... +++||+.|++.++..++..+.. ++.||.+. ++.
T Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~---~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~~~ 193 (400)
T PRK11646 122 ALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL---QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-----STV 193 (400)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----ccc
Confidence 99999999999999999999999999999999976554 3589999998877766654433 44554210 000
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcC
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLG 317 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 317 (385)
++ +.++++++.++++....... ..+...........+.|.+.++.+
T Consensus 194 ~~-----------------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~ 239 (400)
T PRK11646 194 RT-----------------------------PVREGMTRVLRDKRFVTYVL-----TLTGYYMLAVQVMLMLPIMVNDIA 239 (400)
T ss_pred ch-----------------------------hhHHHHHHHHcCchHHHHHH-----HHHHHHHHHHHHHHhhhhhHHhhc
Confidence 00 00112334444433222111 111111112234457888888865
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhh-ccccchhHHHHhhHHHHHHHHHHHHHh
Q 016673 318 FGSGAALYSSVITGIALCIAALISMAFV-DKFGRRAFFLEAGTEMIIYMVTTLHSN 372 (385)
Q Consensus 318 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~~~r~~~~~~~~~~~~~~~~~~~~~ 372 (385)
.++.+.+......++....+....++.. ||++.++.+..+..+.+++..++....
T Consensus 240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (400)
T PRK11646 240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS 295 (400)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 5778888888877776666555555555 456666666667666666666555443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=178.44 Aligned_cols=263 Identities=13% Similarity=0.114 Sum_probs=173.6
Q ss_pred cCCchH-HHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQV-LTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~-~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
|+|.++ .|.+.++++.++++++++.|+++||+|.|+++.++.+.+++.+++.+++++++.+.+.|++.|++.|... +.
T Consensus 57 glT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~ 135 (511)
T TIGR00806 57 NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AY 135 (511)
T ss_pred CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 689999 9999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhh---hHHHHHHHHHhhcccccchhHHHhc
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGL---ATVPATLMFVGGLFLPETPNSLVEQ 234 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~---~~~~~~~~~~~~~~~~e~~~~~~~~ 234 (385)
..++..|+|+++|+++.++..++..+|.+++++++.. ...+|||+.+.+ ......++++..+++|..++.+.-+
T Consensus 136 ~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql---l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~ 212 (511)
T TIGR00806 136 SSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL---LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFN 212 (511)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhc
Confidence 9999999999999999999999999999999999765 234589875543 3444445556667888665543322
Q ss_pred CCHHHHHHHHHHHhCCCchhH-HHHH-HH-HHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHH
Q 016673 235 GKLDEARKVLEKVRGTANVDA-EFSD-LI-DASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 311 (385)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (385)
++.+.......+.....+.+. +..+ .+ .....-+.....+++..+++...... +-+....++++-+..|...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WS-----lWwa~a~~g~~qv~~Y~Q~ 287 (511)
T TIGR00806 213 RLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWS-----LWWVFNSAGYYLITYYVHT 287 (511)
T ss_pred cccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhh-----HHHHHHhhHHHHHHHHHHH
Confidence 221100000000000000000 0000 00 00000011112222333333222211 1233444556666666655
Q ss_pred HHHhcCC-CCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 016673 312 IFQSLGF-GSGAALYSSVITGIALCIAALISMAFVDKFGR 350 (385)
Q Consensus 312 ~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 350 (385)
+-++..- .+..-|..-++..+.+.+..+..|++-.+..+
T Consensus 288 LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~ 327 (511)
T TIGR00806 288 LWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR 327 (511)
T ss_pred HHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 5555322 12234666667777778888888888555433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=179.35 Aligned_cols=253 Identities=15% Similarity=0.137 Sum_probs=179.1
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh-----cchH-HHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-----GRRA-SIMVGSVSFFIGAILNACA---VHISMLLLGRIFLGMG 149 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~-----Grr~-~~~~~~~~~~i~~~~~~~~---~~~~~~~~~r~l~G~~ 149 (385)
+++.+++|++..+... .+..+++|+++||+ |||| .++.+.++.+++....++. ++++.+.+..++.++.
T Consensus 30 g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~ 107 (402)
T PRK11902 30 GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFL 107 (402)
T ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 4899999999777776 69999999999999 8875 6888888888888877776 4578888888888988
Q ss_pred hhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCC-cchhHHHhhhHHHHHHHHHhhcccccch
Q 016673 150 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFLPETP 228 (385)
Q Consensus 150 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~~ 228 (385)
.+...++..+++.|+.|+++|+++.++...+..+|.++++.++.... +. .|||..|++.++..++..+..++.||++
T Consensus 108 ~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~--~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 108 SASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA--DRVLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH--hcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 89999999999999999999999999999999999999998854333 32 4899999998887766655555667764
Q ss_pred hHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHh
Q 016673 229 NSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 308 (385)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (385)
+.. ++.++. .++.+++++++++++..+....... .... .........
T Consensus 186 ~~~---~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~l~~~~-l~~~---~~~~~~~~~ 232 (402)
T PRK11902 186 VPA---RPPRSL--------------------------GEAVVGPLRDFFSRRGAWALLLLIV-LYKL---GDAFAGSLS 232 (402)
T ss_pred ccc---cccchh--------------------------HHHHHHHHHHHHhCcCHHHHHHHHH-HHHh---HHHHHHHHH
Confidence 310 000000 0001122445666655444433222 1111 111111223
Q ss_pred HHHHHHhcCCCCchHHHHHHHHH-HHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHH
Q 016673 309 APVIFQSLGFGSGAALYSSVITG-IALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTT 368 (385)
Q Consensus 309 ~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~ 368 (385)
.|.+.++.|+++.+.+......+ ++.+++.++.+++.||+++|+.+..+..+..+..+.+
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~ 293 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGY 293 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34445558999988888876655 4688999999999999999888776666655554433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-21 Score=175.63 Aligned_cols=244 Identities=16% Similarity=0.108 Sum_probs=164.9
Q ss_pred cCCchHHHHHHHHHHH-HHHhHhhhhhhhhhhhcchHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYF-AGLVSTFGASYVTRSRGRRASI-MVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQA 156 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l-~~~~~~~~~g~l~d~~Grr~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 156 (385)
+.++++.|++.+...+ +..++.++.++ +||+||||.+ +.+.++..++..+.+++++++.+++.+.+.|...+...+.
T Consensus 47 ~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 125 (393)
T PRK15011 47 HARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQ 125 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 5789999999876655 55666655666 9999999875 4556666778888888999998877665555555677888
Q ss_pred hhHHhhhcCCCccc--hhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHh
Q 016673 157 VPLYLSEMAPAKIR--GAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVE 233 (385)
Q Consensus 157 ~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~ 233 (385)
...++.|+.++++| +...++.+.+.++|.+++|++++... ++.|||..|++.++..++..+.. +++||.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~--~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~--- 200 (393)
T PRK15011 126 MFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA--MGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE--- 200 (393)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH--HhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---
Confidence 88888888877655 34557888999999999999965443 35689999998887776665544 457776421
Q ss_pred cCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHH
Q 016673 234 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 313 (385)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (385)
+++.++ ..+.. .+++ +....... .. ............+.|.++
T Consensus 201 ~~~~~~------------------------------~~~~~---~~~~--~~~~~~~~-~~-~~~~~~~~~~~~~~p~~l 243 (393)
T PRK15011 201 LPLATG------------------------------TLEAP---RRNR--RDTLLLFV-IC-TLMWGTNSLYIINMPLFI 243 (393)
T ss_pred Cccccc------------------------------ccccc---cccc--ccHHHHHH-HH-HHHHHHHHHHHHHHHHHH
Confidence 000000 00000 0111 11111111 11 222223444556788887
Q ss_pred Hh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHH
Q 016673 314 QS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYM 365 (385)
Q Consensus 314 ~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~ 365 (385)
++ +|+++.+.+.......+..+++.++.|+++||++||+.+..+.....+..
T Consensus 244 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~ 296 (393)
T PRK15011 244 INELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFY 296 (393)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 65 89998888888887778888999999999999999988776655544443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-22 Score=179.55 Aligned_cols=253 Identities=12% Similarity=0.086 Sum_probs=181.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASI----MVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 154 (385)
+.+.+++|++.+.+.+...++++++|+++||+|||+.. ..+..+..+ ..+..+++++.+++.|+++|.+.+...
T Consensus 35 g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~ 112 (382)
T TIGR00902 35 GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGM 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccch
Confidence 58999999999999999999999999999999985433 222222222 244467899999999999999998888
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhc
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 234 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 234 (385)
|...++..|+ +++|++..+......++|.+++|++++... +.+|||..|.+.....++..+ .+.++|+++. +
T Consensus 113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~--~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~---~ 184 (382)
T TIGR00902 113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLI--GMFDEQNILAILTAGLAFMLI-GFLIKPTIPP---K 184 (382)
T ss_pred hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHH--HHcChhHHHHHHHHHHHHHHH-HHHcCCCCCC---C
Confidence 9888887765 577899999999999999999999955443 456899998876654333322 2333333210 0
Q ss_pred CCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHH
Q 016673 235 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 314 (385)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (385)
++.++ ++++...+.++++|++..+... ...++..........+.|.+++
T Consensus 185 ~~~~~--------------------------~~~~~~~~~~~~l~~~~~~~~l-----~~~~l~~~~~~~~~~~~~~~l~ 233 (382)
T TIGR00902 185 DAIPE--------------------------DESQGDSAFIALLKNPMNLRFL-----AAVCLIQGAHAAYYGFSAIYWQ 233 (382)
T ss_pred ccccc--------------------------cccccchhHHHHHcChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0000011234555544332222 2233333445666778888888
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHh
Q 016673 315 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSN 372 (385)
Q Consensus 315 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~ 372 (385)
+.|.++.+.+.......+..+++..+.+++.||+++|+.+.++.+...+...++....
T Consensus 234 ~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~ 291 (382)
T TIGR00902 234 AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE 291 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh
Confidence 8999999999999999999999999999999999999999999999988888776544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-22 Score=179.84 Aligned_cols=252 Identities=11% Similarity=0.092 Sum_probs=178.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcch----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRR----ASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 154 (385)
+.+..++|+..+++.++..+++++.|+++||+||| +.+.++..+. .......+++++.+++.|++.|++.+...
T Consensus 35 g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~ 112 (382)
T PRK11128 35 GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLV 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccc
Confidence 47999999999999999999999999999999984 3333222222 22333446889999999999999999899
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhc
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ 234 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 234 (385)
+...++..++ +++|+++.+......++|..+||++++.. .+++|||..|++.++..++..+...+.||+++ +
T Consensus 113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l--~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~ 184 (382)
T PRK11128 113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKL--VSWFGEQAILWILTAGVASMLLGQLLRPTIMP----Q 184 (382)
T ss_pred cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHH--HHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----c
Confidence 9888888876 45678888889999999999999996544 34468999998777655444443344454321 0
Q ss_pred CCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHH
Q 016673 235 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQ 314 (385)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (385)
++.++ +.++...+++++++++..+..... .+...........+.|.+.+
T Consensus 185 ~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~ 233 (382)
T PRK11128 185 GESRQ--------------------------QESAGWPAWKALLKEPTVWRFLLC-----VSLLQGSHAAYYGFSAIYWQ 233 (382)
T ss_pred ccccc--------------------------ccccccchHHHHHcChhHHHHHHH-----HHHHHHHhHhHHHHHHHHHH
Confidence 00000 000012235566665544333222 22222233445566777888
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 315 SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 315 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
+.|.++.+.+.......++.++..++.+++.||+++|+.+..+.+..++..+++...
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST 290 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999899999998889999999999999999999999988888888777666543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=201.70 Aligned_cols=262 Identities=12% Similarity=0.029 Sum_probs=183.5
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---CAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+....+++.+++.+++.++++++|+++||+|||++++.+.++..++.++.. .+++++.++++|+++|++.+...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 455689999999999999999999999999999999998877666655443 45789999999999999999999999
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccC-------CcchhHHHhhhHH-HHHHHHHhhcccccchh
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH-------PWGWRLSLGLATV-PATLMFVGGLFLPETPN 229 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-------~~~wr~~f~~~~~-~~~~~~~~~~~~~e~~~ 229 (385)
.+++.|++|+++|++++++...+..+|.++|+++++.+.... ..+|++.+.+..+ ..++.++..+.+||+|.
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 999999999999999999999999999999999976654330 1134444443333 33333444456777664
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhH
Q 016673 230 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 309 (385)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (385)
....+++.++ . . ..+.....++.+++++..+...+ ..+...........+.
T Consensus 205 ~~~~~~~~~~----------~-~-------------~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 255 (1146)
T PRK08633 205 AAPEVFDKKK----------Y-L-------------FPKLLWRNLKLLRSDRVLWLAII-----GLSYFWFISQLAQANF 255 (1146)
T ss_pred CCcccccccc----------c-c-------------cHHHHHHHHHHHhcCcHHHHHHH-----HHHHHHHHHHHHHHhh
Confidence 2111100000 0 0 00000112333444433222222 1222222334455667
Q ss_pred HHHHHh-cCCCCc-hHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 310 PVIFQS-LGFGSG-AALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 310 ~~~~~~-~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
|.++.+ +|++.. ..+++.+..+++.+++.++.+++.||+++++.+.++.++.+++.+++...
T Consensus 256 ~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1146)
T PRK08633 256 PAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA 319 (1146)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh
Confidence 777765 899988 89999999999999999999999999999888877777776666665543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-21 Score=175.18 Aligned_cols=284 Identities=20% Similarity=0.221 Sum_probs=184.6
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHH
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLY 160 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 160 (385)
+.....|+.+...++.++++++.|+++|.||||.+++.+.++..+|.++++.++|...++++..+.|+|.|.... ....
T Consensus 76 ~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~ 154 (599)
T PF06609_consen 76 GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALA 154 (599)
T ss_pred CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHH
Confidence 456678999999999999999999999999999999999999999999999999999999999999999877664 5566
Q ss_pred hhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcC---CH
Q 016673 161 LSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQG---KL 237 (385)
Q Consensus 161 i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~ 237 (385)
++|..|.|+|....++...........++.++.... .+.+|||.|++.++...+.++..+++..+|++...++ +.
T Consensus 155 isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~--~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~ 232 (599)
T PF06609_consen 155 ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA--AHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSK 232 (599)
T ss_pred HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc--cCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcH
Confidence 899999999998888877776666667777754333 2458999999998877776555433222232222211 12
Q ss_pred HHHHHHHHHHh------------------CC-C---chhHHHHHHHH------H--HHHHH-HhcCC--hhhhhccCCcc
Q 016673 238 DEARKVLEKVR------------------GT-A---NVDAEFSDLID------A--SNAAR-AIKNP--FRNLFKKKNRP 284 (385)
Q Consensus 238 ~~~~~~~~~~~------------------~~-~---~~~~~~~~~~~------~--~~~~~-~~~~~--~~~~~~~~~~~ 284 (385)
.+..+.++.+. +. . +.........- . --+.. ..+++ ..++++++
T Consensus 233 ~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~--- 309 (599)
T PF06609_consen 233 REQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDR--- 309 (599)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccc---
Confidence 22222222221 00 0 00000000000 0 00000 11122 22344432
Q ss_pred hHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCC---chHHHHHHHHHHHHHHHHHHHHHhhccccc-hhHHHHhhH
Q 016673 285 QLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGS---GAALYSSVITGIALCIAALISMAFVDKFGR-RAFFLEAGT 359 (385)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-r~~~~~~~~ 359 (385)
+.+...+ +..+.....++....+.|..... ++-++ ...++.....+++...+.++.+.+..+++| |..++++..
T Consensus 310 r~~~~~l-vi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~ 388 (599)
T PF06609_consen 310 RGFAALL-VISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSV 388 (599)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHH
Confidence 2222222 33444444456666666776655 55554 356788888889999999999999998887 445566766
Q ss_pred HHHHHHHHHHHH
Q 016673 360 EMIIYMVTTLHS 371 (385)
Q Consensus 360 ~~~~~~~~~~~~ 371 (385)
++.+++.+++..
T Consensus 389 ~~ta~~Gama~~ 400 (599)
T PF06609_consen 389 LMTAFCGAMAAV 400 (599)
T ss_pred HHHHHHHHHHHc
Confidence 666665665544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-21 Score=163.01 Aligned_cols=274 Identities=14% Similarity=0.102 Sum_probs=177.6
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhH
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPL 159 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 159 (385)
.+....|.+.+.+.+...+.++.+|.++||+|||++++++++..++...+.+.++|+..++++|++.|+.-| ...+..+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rA 143 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRA 143 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999777777999999766 5568899
Q ss_pred HhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccC-CcchhHHH---hhhHHHHHH-HHHhhcccccchhHHHhc
Q 016673 160 YLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH-PWGWRLSL---GLATVPATL-MFVGGLFLPETPNSLVEQ 234 (385)
Q Consensus 160 ~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-~~~wr~~f---~~~~~~~~~-~~~~~~~~~e~~~~~~~~ 234 (385)
+++|.+++|+|+++++.....+++|.++||.+|+.+.... ..|--+.+ ++..+.... .....+++||+-+...++
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~ 223 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRN 223 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhc
Confidence 9999999999999999999999999999999988776621 11111111 222222222 334457789984322222
Q ss_pred CCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccC-CcchH-HHHHhHHHHHHHccchHHHHHhHHHH
Q 016673 235 GKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKK-NRPQL-VIGALGIPAFQQLTGMNSILFYAPVI 312 (385)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (385)
+...+..+..+ +..+..... ..... ...+++ ...+. ....+.+..+.....+....++.+.+
T Consensus 224 ~~~~~~~~~~~----------~~~~~~~~~-----~~~~v-~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l 287 (451)
T KOG2615|consen 224 DEHSTLQEAAD----------DRLALLKFA-----RIFKV-AALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFL 287 (451)
T ss_pred ccccchhhhhh----------hhhhhcchh-----hhhhh-hhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 00010000000 000000000 00000 111211 11111 11111133333333344444444444
Q ss_pred H-HhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc--chhHHHHhhHHHHHHHHHHHH
Q 016673 313 F-QSLGFGSGAALYSSVITGIALCIAALISMAFVDKFG--RRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 313 ~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~r~~~~~~~~~~~~~~~~~~~ 370 (385)
. +++|+++.+.|.+....++...+.+.......||.+ .+..+..+..++.-.+++++.
T Consensus 288 ~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~ 348 (451)
T KOG2615|consen 288 THGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL 348 (451)
T ss_pred hcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc
Confidence 3 348999999999999999988888888888888876 455555555555555555443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-22 Score=169.62 Aligned_cols=240 Identities=14% Similarity=0.094 Sum_probs=185.6
Q ss_pred cccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhh
Q 016673 75 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 75 ~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 154 (385)
.+..+-+++++|++.+...+.+.+.+++.|.+.||+|+|..+++|+++...+++++++.++++.++++|.+||+|.+...
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhhcCCCc-cchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHh
Q 016673 155 QAVPLYLSEMAPAK-IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVE 233 (385)
Q Consensus 155 ~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~ 233 (385)
++..++++|.+|++ +|++++|+...+.++|.++||++|+... +-.|.+.+|++.++++++...+.+++-|..+ +
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY--e~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~---~ 252 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY--EFAGKSAPFLVLAIVLLLDGALQLLVIEPTE---M 252 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH--hhcCCcCcHHHHHHHHHHHHHHHHheeCccc---c
Confidence 99999999999876 4799999999999999999999965444 4568999999999999988777766433211 0
Q ss_pred cCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHH
Q 016673 234 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 313 (385)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (385)
++ ++.++..+++++++++....... ..............-++.+.
T Consensus 253 ~~------------------------------~~~~~~~~~~~Ll~dP~I~~~ag-----ai~~~n~~lafLePtlslwm 297 (464)
T KOG3764|consen 253 DP------------------------------DSTEQGTPMWSLLMDPYILLIAG-----AITFSNSSLAFLEPTLSLWM 297 (464)
T ss_pred Cc------------------------------cccccCccHHHHHhCchHhhhhc-----chhhccchHHHhCcccHHHH
Confidence 00 01112345666666554222211 11122222333444455554
Q ss_pred Hh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHH
Q 016673 314 QS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFF 354 (385)
Q Consensus 314 ~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~ 354 (385)
.+ ...+.-+.|+.+....+...++..+.|.+.||++..+.+
T Consensus 298 ~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl 339 (464)
T KOG3764|consen 298 LETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWL 339 (464)
T ss_pred HHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHH
Confidence 44 664444889999999999999999999999999943333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-20 Score=157.75 Aligned_cols=278 Identities=15% Similarity=0.170 Sum_probs=212.1
Q ss_pred hhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHH
Q 016673 36 GGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRAS 115 (385)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~ 115 (385)
-+++.|+.....+..+ |.+++.| +++..+.+.+...++.++.+.+++.|++.+|+|+|+.
T Consensus 21 lFfl~G~~~~l~diLi--p~l~~~f------------------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g 80 (422)
T COG0738 21 LFFLWGFITCLNDILI--PHLKEVF------------------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG 80 (422)
T ss_pred HHHHHHHHhhcchhhH--HHHHHHh------------------CccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH
Confidence 3455566665555553 6666666 6899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 016673 116 IMVGSVSFFIGAILNA---CAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN 192 (385)
Q Consensus 116 ~~~~~~~~~i~~~~~~---~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 192 (385)
+++|+.+.++++.+.. ...++..++++-++.|.|.+...+....++....++++....+++.+..+++|.+++|+++
T Consensus 81 i~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g 160 (422)
T COG0738 81 IVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLG 160 (422)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999884 5678999999999999999999999999999999998889999999999999999999997
Q ss_pred Hhcccc-----------C------CcchhHHHhhhHHHHHHHHHhhcc--cccchhHHHhcCCHHHHHHHHHHHhCCCch
Q 016673 193 YGTEKI-----------H------PWGWRLSLGLATVPATLMFVGGLF--LPETPNSLVEQGKLDEARKVLEKVRGTANV 253 (385)
Q Consensus 193 ~~~~~~-----------~------~~~wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (385)
..+... + ...||++|...+...++..+.... .|+.+.- ..
T Consensus 161 ~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~-----~~---------------- 219 (422)
T COG0738 161 SSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA-----AP---------------- 219 (422)
T ss_pred HHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc-----cc----------------
Confidence 655541 0 124788888777766665554433 3443210 00
Q ss_pred hHHHHHHHHHHHHHHHhc-CChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHH
Q 016673 254 DAEFSDLIDASNAARAIK-NPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITG 331 (385)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~ 331 (385)
+..+.+ ....++++++..+.-. +..++..........+++.++.+ .|.+..++....+...
T Consensus 220 ------------~~~~~~~~~~~~l~~~~~~~~gv-----l~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~ 282 (422)
T COG0738 220 ------------SLGASGSAGLSSLFQNKHLRLGV-----LAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFW 282 (422)
T ss_pred ------------cccccccchHHHHHhChHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 000001 1234555554433333 34555556667778888999888 8899999999999999
Q ss_pred HHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 332 IALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 332 ~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
.+.++|++++.++.+|++..|.+....++..+.++...+.
T Consensus 283 ~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~ 322 (422)
T COG0738 283 VGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI 322 (422)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998888777665555544444443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-21 Score=196.99 Aligned_cols=253 Identities=12% Similarity=0.074 Sum_probs=178.5
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhH
Q 016673 83 QVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMV---GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPL 159 (385)
Q Consensus 83 ~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 159 (385)
...++..+++.+.+.++++++|+++||+|||+++.. ..++..+..+.+...+|+++++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 567888999999999999999999999999997533 22333333333344589999999999999999999999999
Q ss_pred HhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHH
Q 016673 160 YLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDE 239 (385)
Q Consensus 160 ~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 239 (385)
++.|++|+++|++++++.+++.++|.++||++++.+.. ..+|++.|+..++..++.++..+++|+++... ++...+
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 207 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI--SGNFVILVALLMGIAVLGWLASLFIPKTGNAA--PDLKID 207 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCeec
Confidence 99999999999999999999999999999999765544 45899999555555555555556677654210 000000
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCC
Q 016673 240 ARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGF 318 (385)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 318 (385)
. .. .++....++.+.+++..+...+ ..+...........+.|.++++ +|.
T Consensus 208 ~-----------------~~-------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~g~ 258 (1140)
T PRK06814 208 R-----------------NI-------IRSTITLLKYAKADKRIWLAIL-----GISWFWLVGAVVLSQLPLLAKETLGG 258 (1140)
T ss_pred c-----------------ch-------HHHHHHHHHHHhcCchHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHcCC
Confidence 0 00 0000112334444443333222 2222223344566678888877 899
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHH
Q 016673 319 GSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTT 368 (385)
Q Consensus 319 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~ 368 (385)
++...+.+.+..+++.+++.++.+++.|+..+++.+..+.++.+++.+.+
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l 308 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDL 308 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHH
Confidence 99999999999999999999999999988776665555555444444433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=170.17 Aligned_cols=257 Identities=13% Similarity=0.126 Sum_probs=169.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH---hh-----hhHHHHHHHHHHHHhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---CA-----VHISMLLLGRIFLGMGI 150 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~---~~-----~~~~~~~~~r~l~G~~~ 150 (385)
+.++.+.+++.+.+.++..+++++.|+++||+|||+.++.+....+++..... +. +.....++.|++.|++.
T Consensus 34 g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 113 (396)
T TIGR00882 34 GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVF 113 (396)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999887776665444321 11 23345567789999988
Q ss_pred hhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc-cccchh
Q 016673 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF-LPETPN 229 (385)
Q Consensus 151 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~~~ 229 (385)
+...+....+..|..+ +++...+......++|..++|.+++... ..+||+.|++.++..++..+..+. .||+|+
T Consensus 114 ~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (396)
T TIGR00882 114 SAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILF---SIDPQIVFWLGSGFALILMLLLMFAKPKAPS 188 (396)
T ss_pred ccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhh---ccCchHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 8888888888777543 3455667777888899999999965443 248999999988877776555544 344332
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhH
Q 016673 230 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 309 (385)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (385)
.. +.+++. +.+ .++++.++.++.++++..+...+ ..+.....+.....+.
T Consensus 189 ~~----~~~~~~-------~~~--------------~~~~~~~~~~~~l~~~~~~~~~l-----~~~~~~~~~~~~~~~~ 238 (396)
T TIGR00882 189 SA----TVANAL-------GAN--------------ASAFSLKLALELFRQRKFWMFVL-----YVVGVACVYDVFDQQF 238 (396)
T ss_pred hh----hhhccc-------ccc--------------cCCCCHHHHHHHHcCCcHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 10 000000 000 00000112344555543322221 1222222233344455
Q ss_pred HHHHHhc----CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHH
Q 016673 310 PVIFQSL----GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 310 ~~~~~~~----g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
|.++++. +.+....+.......+...++....+++.||+++|+.+.++..+.++...+...
T Consensus 239 ~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~ 303 (396)
T TIGR00882 239 ANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF 303 (396)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 6666552 445566788888888899999999999999999999988888877776665443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=165.20 Aligned_cols=258 Identities=15% Similarity=0.110 Sum_probs=158.0
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH---hhh-----hHHHHHHHHHHHHhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---CAV-----HISMLLLGRIFLGMGI 150 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~---~~~-----~~~~~~~~r~l~G~~~ 150 (385)
++++.+.|++.+++.++..+++++.|+++||+|||++++++..+.+++..... .++ ......+++++.|.+.
T Consensus 42 g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (420)
T PRK09528 42 GLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGF 121 (420)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 68999999999999999999999999999999999999887666655443221 111 1111223344444333
Q ss_pred hhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccc-ccchh
Q 016673 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPN 229 (385)
Q Consensus 151 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~~ 229 (385)
....+....+..+. .++|++.++......++|..++|++++.+.. .+|++.|++.++..++..+..++. +|+++
T Consensus 122 ~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 196 (420)
T PRK09528 122 LAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN---INPQINFWLGSGSALILLVLLFFAKPDAPS 196 (420)
T ss_pred ccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh---cCchHhHHHHHHHHHHHHHHHhcccccccc
Confidence 33333333333222 3456778888888899999999999765543 379999998887777766655554 33322
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhH
Q 016673 230 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 309 (385)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (385)
....+++ ++ . ++++...+...+.++++..+...+... .....+.....+.
T Consensus 197 ~~~~~~~-~~----------~--------------~~~~~~~~~~~~~l~~~~~~~l~l~~~-----~~~~~~~~~~~~~ 246 (420)
T PRK09528 197 TAKVANA-LG----------A--------------NASAVSLKDALALLKLPKFWFLVLYVI-----GVACFYDVFDQQF 246 (420)
T ss_pred hhhhccc-hh----------c--------------ccccccHHHHHHHccCCCeEeehHHHH-----HHHHHHHHHHHHH
Confidence 1000000 00 0 000000011223444444333332211 1111122233334
Q ss_pred HHHHHh----cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 310 PVIFQS----LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 310 ~~~~~~----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
|.++.+ .+.+..+.+.......+..+++.++.+++.||+++|+.+..+..+..+...++...
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~ 312 (420)
T PRK09528 247 PNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA 312 (420)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc
Confidence 554443 35566677888888889999999999999999999999888887777776666543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-21 Score=175.76 Aligned_cols=284 Identities=19% Similarity=0.215 Sum_probs=197.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLG-RIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-r~l~G~~~g~~~~~~ 157 (385)
+.+.++++|+.++......+.+|+.+.+.||+|.|.+.+.|.++..++.++.++++++|++++. -++.|+|.|..+...
T Consensus 77 ~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~pa 156 (509)
T KOG2504|consen 77 GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPA 156 (509)
T ss_pred CCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcch
Confidence 4678889999999999999999999999999999999999999999999999999999998887 689999999999999
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccc-ccchhHHHhc-C
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPNSLVEQ-G 235 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~-~ 235 (385)
..++..++ +|+|+.+.|+...+.++|..+-|++ .-...+..|||+.+++.+.+.+-.++....+ |.+++....+ +
T Consensus 157 iviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l--~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~ 233 (509)
T KOG2504|consen 157 VVILGTYF-EKKRALATGIAVSGTGVGTVVFPPL--LKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEK 233 (509)
T ss_pred hhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHH--HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhh
Confidence 99999777 6789999999999999999988888 4444556799999998888776665555443 3222210000 0
Q ss_pred CHHHHHHHHH--------HHhCCC--chh---HHHHHHHHHHHHHH--HhcCCh----hhhhccCCcchHHHHHhHHHHH
Q 016673 236 KLDEARKVLE--------KVRGTA--NVD---AEFSDLIDASNAAR--AIKNPF----RNLFKKKNRPQLVIGALGIPAF 296 (385)
Q Consensus 236 ~~~~~~~~~~--------~~~~~~--~~~---~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 296 (385)
+.++..+..+ .....+ ... .+..+..+.+++.. ..+... .+++++ +..+... +...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~----~~fl~~~-~~~~ 308 (509)
T KOG2504|consen 234 DLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD----PKFLLLA-LSNL 308 (509)
T ss_pred hhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcC----chHHHHH-HHHH
Confidence 0000000000 000000 000 00000000000000 001111 234444 2223233 4566
Q ss_pred HHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc--hhHHHHhhHHHHHHHHHHHH
Q 016673 297 QQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGR--RAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--r~~~~~~~~~~~~~~~~~~~ 370 (385)
+...++.....++|.+.++.|++..+++.+.+..++..++++++.|++.|+... +....++.+..+++...+..
T Consensus 309 ~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~ 384 (509)
T KOG2504|consen 309 FAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF 384 (509)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 667778888899999999999999999999999999999999999999999874 44444555555555434333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=147.80 Aligned_cols=256 Identities=18% Similarity=0.168 Sum_probs=206.5
Q ss_pred cccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhh
Q 016673 77 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQA 156 (385)
Q Consensus 77 ~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 156 (385)
+++++.+..|.+++...+...+.+++..++++|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.|.+.....
T Consensus 41 ~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVL 119 (395)
T COG2807 41 DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVL 119 (395)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHh
Confidence 346999999999999999999999999999999999999999999999999999887 8888999999999999999999
Q ss_pred hhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCC
Q 016673 157 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGK 236 (385)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 236 (385)
.+.++-+.+|+| -+..++++.+..++|..+++.++..+.... .+||.....-+.++++.++.++- ...|..
T Consensus 120 LPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~-~gW~~aL~~WAl~allAl~~WlP--q~~r~~----- 190 (395)
T COG2807 120 LPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS-GGWRGALGFWALLALLALLIWLP--QALREQ----- 190 (395)
T ss_pred hhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-ccHHHHHHHHHHHHHHHHHHHhh--hccccc-----
Confidence 999999999765 599999999999999999988854444333 47999999988888888776543 211100
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhc
Q 016673 237 LDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSL 316 (385)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (385)
. ...+....+...+++++.-|... +++..+...++....|+|.++.+.
T Consensus 191 ~---------------------------~~~~~~~~~~~~vw~~~~aW~vt-----LfmGlqS~~~Y~~~~WLP~ili~~ 238 (395)
T COG2807 191 A---------------------------ASIATKLVSVRKVWRSPLAWQVT-----LFMGLQSLLYYIVIGWLPAILIDR 238 (395)
T ss_pred c---------------------------cccccccccccccccCchhHHHH-----HHHHhhHHHHHHHHHHHHHHHHHc
Confidence 0 00011122233455555444443 456677778899999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhhccc-cchhHHHHhhHHHHHHHHHHHHHhhh
Q 016673 317 GFGSGAALYSSVITGIALCIAALISMAFVDKF-GRRAFFLEAGTEMIIYMVTTLHSNMI 374 (385)
Q Consensus 317 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~~~~~~~~~~~~~ 374 (385)
|+|+.++|.+.+...+..++.++....+.+|. ++|+..+....++.++...+.+....
T Consensus 239 G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~ 297 (395)
T COG2807 239 GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQ 297 (395)
T ss_pred CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999975 46777777778888888777765543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-19 Score=164.46 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=118.4
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA------VHISMLLLGRIFLGMGIGF 152 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~r~l~G~~~g~ 152 (385)
+++..+.+++.++. .....++++.|++.||+|||++++++.++..+++++++++ ++++.+++.|++.|+|.+.
T Consensus 58 gls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~ 136 (591)
T PTZ00207 58 NLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCML 136 (591)
T ss_pred CcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHH
Confidence 57899999988874 3455678889999999999999999999999999999997 6899999999999999999
Q ss_pred hhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-ccc--ccchh
Q 016673 153 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFL--PETPN 229 (385)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~--~e~~~ 229 (385)
..+.....+.+++| ++||++.++...+.++|..+.+.+...... .+|+..|++.+++.++..++. .++ |++++
T Consensus 137 ~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~---~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~ 212 (591)
T PTZ00207 137 FDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS---DNTSAYFFFLMSFALVVGILAIVFMRLPPFHL 212 (591)
T ss_pred HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhheeCCcchh
Confidence 99999999999996 789999999999999999864444322222 258888887777766654444 333 44444
Q ss_pred H
Q 016673 230 S 230 (385)
Q Consensus 230 ~ 230 (385)
+
T Consensus 213 ~ 213 (591)
T PTZ00207 213 T 213 (591)
T ss_pred h
Confidence 3
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=162.48 Aligned_cols=135 Identities=14% Similarity=0.192 Sum_probs=117.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVHISM-LLLGRIFLGMGIGFGNQA 156 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~r~l~G~~~g~~~~~ 156 (385)
|++.++.+++.+.+.....+..+++|+++|| +||||+++++.+++.++++.++++.+... +.++|+++|+|.|...+.
T Consensus 46 g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~ 125 (489)
T PRK10207 46 GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKAN 125 (489)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCC
Confidence 5788899999999998888889999999999 99999999999999999999999876554 457899999999999999
Q ss_pred hhHHhhhcCCCc--cchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHH
Q 016673 157 VPLYLSEMAPAK--IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPAT 215 (385)
Q Consensus 157 ~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~ 215 (385)
..+++.|.+|++ +|+++.++++.+.++|..+||.+++... ++.|||+.|++.++..+
T Consensus 126 ~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~--~~~gw~~~F~i~~i~~~ 184 (489)
T PRK10207 126 PASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA--DKFGYSVTYNLCGAGLI 184 (489)
T ss_pred HHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH--HhhChHHHHHHHHHHHH
Confidence 999999999877 4577899999999999999999965554 34589999998655333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=166.94 Aligned_cols=257 Identities=16% Similarity=0.151 Sum_probs=174.9
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhh----hcchH-HHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHH
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRRA-SIMVGSVSFFIGAILNACAVH------ISMLLLGRIFLG 147 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~----~Grr~-~~~~~~~~~~i~~~~~~~~~~------~~~~~~~r~l~G 147 (385)
++++.+.|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+.+...++ ...+++.+++.+
T Consensus 31 g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (437)
T TIGR00792 31 GLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLG 110 (437)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence 6899999999999999999999999999998 68754 577788888888887776553 456677888999
Q ss_pred hhhhhhhhhhhHHhhhcC-CCccchhHHHHHHHHHHHHHHHHHHHHHhccc-----cCCcchhHHHhhhHHHHHHHHHhh
Q 016673 148 MGIGFGNQAVPLYLSEMA-PAKIRGAVNQLFQLTTCLGILVANLINYGTEK-----IHPWGWRLSLGLATVPATLMFVGG 221 (385)
Q Consensus 148 ~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~~ 221 (385)
++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+...... .+..+||+.+.+.+++.++..+..
T Consensus 111 ~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~ 190 (437)
T TIGR00792 111 LFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIIC 190 (437)
T ss_pred HHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 998888888888899987 46899999999988888887766555322221 124689999998888877765544
Q ss_pred -cccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHcc
Q 016673 222 -LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300 (385)
Q Consensus 222 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (385)
+..||+++. .+.++ +++.+.++.++++++++..+... ...+....
T Consensus 191 ~~~~~e~~~~----~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~ 236 (437)
T TIGR00792 191 FFGTKERYSE----IPKNI-------------------------EKKLSLKQIFKALFKNDQLLILC-----LAYLFYNL 236 (437)
T ss_pred HcCCEecCCC----CCccc-------------------------ccCCCHHHHHHHHhCCHHHHHHH-----HHHHHHHH
Confidence 556765421 00000 00000011123334433322222 12222223
Q ss_pred chHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHH
Q 016673 301 GMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 301 ~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
.......+.+++.+. .+ ++...+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 306 (437)
T TIGR00792 237 AFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF 306 (437)
T ss_pred HHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555544 44 4556667777778999999999999999999999988888777776665544
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-18 Score=158.32 Aligned_cols=250 Identities=10% Similarity=-0.012 Sum_probs=167.0
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcc-hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR-RASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Gr-r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
|++.+++|++.+++.++..++++++|+++||+|| |+++.++.++..++..+..+.++++.+.+.|++.|++.+...+..
T Consensus 34 g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (418)
T TIGR00889 34 HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALT 113 (418)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHH
Confidence 5899999999999999999999999999999965 778888888888888888899999999999999999877666665
Q ss_pred hHHhh--------hcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchh
Q 016673 158 PLYLS--------EMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPN 229 (385)
Q Consensus 158 ~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~ 229 (385)
.++.. |......|.+..| .+|..++|.+++... ....|+. |++.++..++..+..+++||+|+
T Consensus 114 ~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~--~~~~~~~-f~~~~~~~~~~~~~~~~~~e~~~ 184 (418)
T TIGR00889 114 NSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD--IELSNIQ-LYITAGSSALLGVFALTLPDIPV 184 (418)
T ss_pred HHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc--ccchhHH-HHHHHHHHHHHHHHHhcCCCCCC
Confidence 55432 2233334455544 356777777754331 1223554 44555555555555566788753
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhH
Q 016673 230 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 309 (385)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (385)
. +++.++ + ..+..+.+.++.+|++......+..+ +..........+.
T Consensus 185 ~---~~~~~~--------------~-----------~~~~~~~~~~~~~k~~~~~~~~~~~~-----~~~~~~~~~~~~~ 231 (418)
T TIGR00889 185 A---KSTAKM--------------S-----------IKVMLGLDAFILFKNKRMAIFFFFSM-----LLGAPLQITNIFG 231 (418)
T ss_pred C---cccccc--------------C-----------HHHHhhhhHHHHhcCCCeeeHHHHHH-----HHHhHHHHHHHhH
Confidence 1 000000 0 00000112334455554433332222 2222233344566
Q ss_pred HHHHHhcCCCC--------chHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHH
Q 016673 310 PVIFQSLGFGS--------GAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 310 ~~~~~~~g~s~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
|.+.++.|.++ ...+...+...+..+++.+..+++.||+|+|+.+..+.++..+...++..
T Consensus 232 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~ 300 (418)
T TIGR00889 232 NGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY 300 (418)
T ss_pred HHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 77777766553 55688888889999999999999999999999999998888777665554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=161.49 Aligned_cols=259 Identities=15% Similarity=0.142 Sum_probs=189.3
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHhhhhhhhh
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-----VHISMLLLGRIFLGMGIGFGNQ 155 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~ 155 (385)
|+..++++..+..+...+.++++|.++||++||++++.+.++.++..+..++. .+.+.+++.-++.|++.+...|
T Consensus 43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~P 122 (524)
T PF05977_consen 43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNP 122 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999998887666554432 4788999999999999999999
Q ss_pred hhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcC
Q 016673 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQG 235 (385)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 235 (385)
+..+++.|..|+++...+.++.+...++..++||.+++.+... .|-.+.|.+.++..++.+.....+++.++ +++
T Consensus 123 A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~--~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~ 197 (524)
T PF05977_consen 123 AWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF--FGAAAAFLINALSFLISILALLRWKPPPP---PSS 197 (524)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcccccc---ccc
Confidence 9999999999999999999999999999999999997655433 35677888777655554444433432211 000
Q ss_pred CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh
Q 016673 236 KLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS 315 (385)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (385)
..++ +..++.+..++-+.+++..+..+.... ............+|.+.++
T Consensus 198 ~~~e-------------------------~~~~~l~~G~ryv~~~~~l~~~l~~~~-----~~~l~~~a~~aLlPl~a~~ 247 (524)
T PF05977_consen 198 LPRE-------------------------RFFSALREGLRYVRSSPPLRSVLLRSF-----LFNLFASAVWALLPLFARD 247 (524)
T ss_pred cchh-------------------------hhhhhHHHHHHHHhcchHHHHHHHHHH-----HHHHhhhHHHHhhhHHHHH
Confidence 0000 000111122222223332222222111 1112223344567888876
Q ss_pred -cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHhhh
Q 016673 316 -LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSNMI 374 (385)
Q Consensus 316 -~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 374 (385)
+|.++...|++.+..+++.++|.++.+++.+|+++++.+..+.+..+++.+.+++....
T Consensus 248 ~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~ 307 (524)
T PF05977_consen 248 VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSF 307 (524)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHH
Confidence 89999999999999999999999999999999999888888888888887777765543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=152.66 Aligned_cols=244 Identities=11% Similarity=-0.016 Sum_probs=162.3
Q ss_pred cCCchHHHHHH--HHHHHHHHhHhhhhh-hhhhhhcchHHHHHHHHHH-HHHHHHHH---hhhh-HHHHHHHHHHHHhhh
Q 016673 79 KYDNQVLTLFT--SSLYFAGLVSTFGAS-YVTRSRGRRASIMVGSVSF-FIGAILNA---CAVH-ISMLLLGRIFLGMGI 150 (385)
Q Consensus 79 ~~~~~~~~~~~--s~~~l~~~~~~~~~g-~l~d~~Grr~~~~~~~~~~-~i~~~~~~---~~~~-~~~~~~~r~l~G~~~ 150 (385)
+.+.+++|.+. +...+...+.+++.+ +..||+||||..++.+.+. .++....+ ...+ ...++..-++.++..
T Consensus 32 g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
T TIGR02718 32 GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLAS 111 (390)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 47999999974 667888888888884 4799999999976655332 22222222 1222 334445556666777
Q ss_pred hhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhH
Q 016673 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNS 230 (385)
Q Consensus 151 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~ 230 (385)
+...+...++..|..++++++...+....+..+|..+|+... ....+..|||..|++.++..++..+..++++|+++.
T Consensus 112 a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~--~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~ 189 (390)
T TIGR02718 112 ATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGT--LVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA 189 (390)
T ss_pred HHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 778888888889999888888888888888888999888763 333345689999999988877665555554443210
Q ss_pred HHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHH
Q 016673 231 LVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAP 310 (385)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (385)
+++.++ +...+.++.+|++..+..... .++..........+.+
T Consensus 190 ---~~~~~~-----------------------------~~~~~~~~~l~~~~~~~~~~~-----~~l~~~~~~~~~~~~~ 232 (390)
T TIGR02718 190 ---SPEAPL-----------------------------ARRASLFRFFRRPLAWSLLAL-----ALLSAMTAVSGFGLSK 232 (390)
T ss_pred ---ccccch-----------------------------hhHHHHHHHHcCcCHHHHHHH-----HHHHHHHHHHHHHHhh
Confidence 000000 001123455555543333222 2222233344555677
Q ss_pred HHHHhcCCCCchHHHHHHHHHH-HHHHHHHHHHHhhccccchhHHHHhhHHH
Q 016673 311 VIFQSLGFGSGAALYSSVITGI-ALCIAALISMAFVDKFGRRAFFLEAGTEM 361 (385)
Q Consensus 311 ~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~r~~~~~~~~~~ 361 (385)
.++++.|+++++.+......+. ..+++.++.+++.||+|+|+.+..+..+.
T Consensus 233 ~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~ 284 (390)
T TIGR02718 233 LYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA 284 (390)
T ss_pred HHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888899999999998887764 66677899999999999999888766555
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-17 Score=152.51 Aligned_cols=140 Identities=12% Similarity=0.227 Sum_probs=124.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
|++..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++.++.+++++++.+.++|++.|++.|...+..
T Consensus 44 g~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~ 123 (475)
T TIGR00924 44 GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANP 123 (475)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCH
Confidence 6899999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcCCCcc---chhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHh
Q 016673 158 PLYLSEMAPAKI---RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 220 (385)
Q Consensus 158 ~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (385)
.++++|++|+++ |+.+.++.+.+.++|..+||.+++... ++.+||+.|.+.++..++..+.
T Consensus 124 ~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~--~~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 124 SSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA--ENYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH--HhcChHHHHHHHHHHHHHHHHH
Confidence 999999998764 888999999999999999999965443 4458999999877655544333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-17 Score=147.14 Aligned_cols=271 Identities=13% Similarity=0.138 Sum_probs=172.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhh----hhcchHHHHHH-HHHHHHHHHHHHhhhhHH----------------
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTR----SRGRRASIMVG-SVSFFIGAILNACAVHIS---------------- 137 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d----~~Grr~~~~~~-~~~~~i~~~~~~~~~~~~---------------- 137 (385)
+.++.+.+++..+..+...+.+++.|+++| |+||||.++++ .....++.++.+++++.+
T Consensus 35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i 114 (477)
T TIGR01301 35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI 114 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence 578999999999999999999999999999 59999998875 666666667777766543
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccc--hhHHHHHHHHHHHHHHHHHHHHHhccccC-------------Cc
Q 016673 138 -MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIR--GAVNQLFQLTTCLGILVANLINYGTEKIH-------------PW 201 (385)
Q Consensus 138 -~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-------------~~ 201 (385)
.++++-.+..++.+...+...++++|..|+++| +.+.++.+...++|.++|+.+++.....+ ..
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~ 194 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCA 194 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccc
Confidence 233333445557888888999999999998865 57999999999999999999976532111 02
Q ss_pred chhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhcc
Q 016673 202 GWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKK 280 (385)
Q Consensus 202 ~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (385)
+.|+.|++.++..++..+.. +..+|.|....++.+.++. ++.+ +.+.+..++++++.
T Consensus 195 ~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~-------~~~~---------------~~~~~~~~~~i~~~ 252 (477)
T TIGR01301 195 NLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEA-------APPS---------------KHGEEAFFGELFGA 252 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhc-------cccc---------------ccchhhhHHHHHHH
Confidence 67899999888777765554 5678876311100000000 0000 00001122333321
Q ss_pred -CCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh--cCCCCc------h----HHHHHHHHHHHHHHHHHHHHHhhcc
Q 016673 281 -KNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS--LGFGSG------A----ALYSSVITGIALCIAALISMAFVDK 347 (385)
Q Consensus 281 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~------~----~~~~~~~~~~~~~~~~~~~g~l~d~ 347 (385)
+..++....+. +..++...++..+..|.+.+..+ ++-++. + ..+......+...+.+++..++.+|
T Consensus 253 ~~~mP~~m~~l~-~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 253 FKYLPRPVWILL-LVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHHCCHHHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222222 34444555566666666666553 443321 1 1233445556666777788889999
Q ss_pred ccc-hhHHHHhhHHHHHHHHHHHHHh
Q 016673 348 FGR-RAFFLEAGTEMIIYMVTTLHSN 372 (385)
Q Consensus 348 ~~~-r~~~~~~~~~~~~~~~~~~~~~ 372 (385)
+|+ |+...++.++.++++....+..
T Consensus 332 ~g~~k~~~~~s~~~~~~~l~~~~~i~ 357 (477)
T TIGR01301 332 WGAGKRLWGIVNIILAICLAATVLVT 357 (477)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHH
Confidence 985 6666788777777777776543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-16 Score=144.79 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=114.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQA 156 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~ 156 (385)
|++.++.+++.+.+........+++|+++|| +|||++++.+.++..++.+++++++ +.+.+.++|+++|++.|...+.
T Consensus 53 g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~ 132 (500)
T PRK09584 53 GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKAN 132 (500)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCC
Confidence 5788888888888776666667899999999 5999999999999999999998874 5667778899999999999999
Q ss_pred hhHHhhhcCCCcc--chhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHH
Q 016673 157 VPLYLSEMAPAKI--RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLM 217 (385)
Q Consensus 157 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 217 (385)
..+++.|++|+++ |..+.++++.+.++|..+||.+++... +..|||+.|.+.++..++.
T Consensus 133 ~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~--~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 133 PSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA--AKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred HHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHH
Confidence 9999999998654 456788999999999999999965544 4568999999877644443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=149.52 Aligned_cols=170 Identities=18% Similarity=0.176 Sum_probs=127.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAIL---NACAVHISMLLLGRIFLGMGIGFGNQ 155 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~r~l~G~~~g~~~~ 155 (385)
+.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++... ...+++...+++++++.|++.+....
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 361 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTG 361 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356667777888888999999999999999999999988887654443332 22345677788899999988777777
Q ss_pred hhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhc-
Q 016673 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQ- 234 (385)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~- 234 (385)
....++.|.+|++.|+++++.......++..++|.+.+...... .+|+.+++...+++++.++..+++||+|+++.++
T Consensus 362 ~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~-~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~ 440 (490)
T PRK10642 362 VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST-QNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA 440 (490)
T ss_pred HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence 78888999999999999999744444455566776644333221 2577777666667776666667789999987755
Q ss_pred ----CCHHHHHHHHHHHhC
Q 016673 235 ----GKLDEARKVLEKVRG 249 (385)
Q Consensus 235 ----~~~~~~~~~~~~~~~ 249 (385)
++.+|+++.+.+++.
T Consensus 441 ~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 441 TPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cccccchhhHHHHhhcccc
Confidence 888999999888863
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-15 Score=131.50 Aligned_cols=293 Identities=14% Similarity=0.098 Sum_probs=194.2
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhH
Q 016673 20 YRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVS 99 (385)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 99 (385)
.|..+++|.++++.++-.+..++....+++. ..+.+.|+ + +.+..-|+.-+|.+.+...
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i---~n~~~~~Y-----------------g-s~~~~~wlsmIym~v~vp~ 95 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPI---NNYVNSFY-----------------G-SSSAADWLSMIYMVVSVPF 95 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhH---HHHHHHHh-----------------c-chHHHHHHHHHHHHHHHHH
Confidence 3567889999998888888777666555544 23444443 3 5667789999999999999
Q ss_pred hhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh------hHH--HHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccch
Q 016673 100 TFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV------HIS--MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 171 (385)
Q Consensus 100 ~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~------~~~--~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 171 (385)
.+.+-|+.|++|-|..++++..+.++|+.+-..+. .++ ....++.+.+.++-........+..-|++++||.
T Consensus 96 gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra 175 (480)
T KOG2563|consen 96 GFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRA 175 (480)
T ss_pred hhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhh
Confidence 99999999999999999999999999999877652 344 6678888888888777777778888899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccC----CcchhH--HHhhhHHHHHHHHHhh-cccccchhHHHhcCCHHHHHHHH
Q 016673 172 AVNQLFQLTTCLGILVANLINYGTEKIH----PWGWRL--SLGLATVPATLMFVGG-LFLPETPNSLVEQGKLDEARKVL 244 (385)
Q Consensus 172 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~----~~~wr~--~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~ 244 (385)
.+..+-..+..+|..++.++...+.... +..|.. .|+.....+.+.+++. +..++.|+...+..+..
T Consensus 176 ~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~------ 249 (480)
T KOG2563|consen 176 IATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAA------ 249 (480)
T ss_pred hhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhh------
Confidence 9999999988888888877754443332 345654 3443444433333333 33344332110000000
Q ss_pred HHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCCCCchHH
Q 016673 245 EKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAAL 324 (385)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 324 (385)
+.+.+-..+.++.++++.+ +..+ +.+......++...+.+...+...|++...+|
T Consensus 250 --------------------~~~~~f~~si~~~~~n~~F----~il~-~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG 304 (480)
T KOG2563|consen 250 --------------------LQDASFPKSIKSCFKNRQF----IILA-ICYGIGLGLFNSLSTLLNLALCPSGYEGVFAG 304 (480)
T ss_pred --------------------hhcCcHHHHHHHHHcCccH----HHHH-HHHhhhHHHHHHHHHHhhhccccccCCccccc
Confidence 0000012233444444332 2222 23333333334444444333344677778899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc-hhHHHHhhHHHHHH
Q 016673 325 YSSVITGIALCIAALISMAFVDKFGR-RAFFLEAGTEMIIY 364 (385)
Q Consensus 325 ~~~~~~~~~~~~~~~~~g~l~d~~~~-r~~~~~~~~~~~~~ 364 (385)
+......+++++++.++|.+.||.+. |...++......++
T Consensus 305 ~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 305 YIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999976 55555555555555
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=141.79 Aligned_cols=258 Identities=10% Similarity=0.024 Sum_probs=161.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhh----hhcc-hHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHH
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTR----SRGR-RASIMVGSVSFFIGAILNACAV------HISMLLLGRIFLG 147 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d----~~Gr-r~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~r~l~G 147 (385)
++++.++|.+..+.-+..++..|+.|.++| |+|| |+.++.+.+..+++..++-..+ .+..+++.-++.+
T Consensus 38 Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~ 117 (473)
T PRK10429 38 GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWG 117 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999 6798 5566667777777766554432 1334556667778
Q ss_pred hhhhhhhhhhhHHhhhcC-CCccchhHHHHHHHHHHHHHHHHHHHHHhc-----cccCCcchhHHHhhhHHHHHHHHHhh
Q 016673 148 MGIGFGNQAVPLYLSEMA-PAKIRGAVNQLFQLTTCLGILVANLINYGT-----EKIHPWGWRLSLGLATVPATLMFVGG 221 (385)
Q Consensus 148 ~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~-----~~~~~~~wr~~f~~~~~~~~~~~~~~ 221 (385)
++.....+...++..|.. ++++|.+..++-....++|..+.+.+.... ...+..+|+....+.+++.++..+..
T Consensus 118 ~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~ 197 (473)
T PRK10429 118 MTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIIT 197 (473)
T ss_pred HHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999998 589999999987777777655554432211 11112368877777776666554444
Q ss_pred -cccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHcc
Q 016673 222 -LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLT 300 (385)
Q Consensus 222 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (385)
+..+|.+.....+.+ ++.+.++++.++.-.+.+.+...+ ...+....
T Consensus 198 ~~~~~e~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~n~~~~~ll-~~~~~~~~ 245 (473)
T PRK10429 198 LRNVHEVYSSDNQVSA-------------------------------EGSHLTLKDIVALIYKNDQLSCLL-GMALAYNI 245 (473)
T ss_pred HcCceecCCccccccc-------------------------------cccCCCHHHHHHHHhcCHHHHHHH-HHHHHHHH
Confidence 346665310000000 001122233322111111122222 22232333
Q ss_pred chHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHH
Q 016673 301 GMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTT 368 (385)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~ 368 (385)
.......+.+++.+....+....+.+.....++.+++.++.+++.||+|+|+.+..+..+..++.+.+
T Consensus 246 ~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~ 313 (473)
T PRK10429 246 ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVL 313 (473)
T ss_pred HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 34444455555555433344555666677778889999999999999999999887776655555444
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.8e-16 Score=141.98 Aligned_cols=258 Identities=14% Similarity=0.203 Sum_probs=184.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhh----hhcchHHH-HHHHHHHHHHHHHHHhh-h-------hHHHHHHHHHH
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTR----SRGRRASI-MVGSVSFFIGAILNACA-V-------HISMLLLGRIF 145 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d----~~Grr~~~-~~~~~~~~i~~~~~~~~-~-------~~~~~~~~r~l 145 (385)
++++...|.+..+.-+..++..|+.|.++| |+||||.. +++.+..+++.+++... + ....+.+.-++
T Consensus 33 gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l 112 (428)
T PF13347_consen 33 GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYIL 112 (428)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence 589999999999999999999999999999 89977665 56778888887777655 3 23345677777
Q ss_pred HHhhhhhhhhhhhHHhhhcCC-CccchhHHHHHHHHHHHHHHHHHHHHHhcccc-C---C-cchhHHHhhhHHHHHHHHH
Q 016673 146 LGMGIGFGNQAVPLYLSEMAP-AKIRGAVNQLFQLTTCLGILVANLINYGTEKI-H---P-WGWRLSLGLATVPATLMFV 219 (385)
Q Consensus 146 ~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-~---~-~~wr~~f~~~~~~~~~~~~ 219 (385)
..++.........++..|..+ +++|.+..+.-..+..+|..+...+....... . . .+|++...+.+++.++..+
T Consensus 113 ~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~ 192 (428)
T PF13347_consen 113 FDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFL 192 (428)
T ss_pred HHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999997 57899999999998888887655553332211 1 1 2799999888888777765
Q ss_pred hh-cccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHH
Q 016673 220 GG-LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298 (385)
Q Consensus 220 ~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (385)
.. +..+|+++ +.+ +++++.+.++.++++++++...... ...++.
T Consensus 193 i~~~~~ke~~~------~~~------------------------~~~~~~~~~~~~~~~~~nr~~~~l~-----~~~~~~ 237 (428)
T PF13347_consen 193 ITFFFVKERSV------EVT------------------------EQEKKISLRDSLRSLFRNRPFRILL-----LAFFLQ 237 (428)
T ss_pred hhhheeeeccc------ccc------------------------ccccccccccchhhhcccchHHHHH-----HHHHHH
Confidence 55 44676211 000 0001111133345555554433332 233444
Q ss_pred ccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHh
Q 016673 299 LTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSN 372 (385)
Q Consensus 299 ~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~ 372 (385)
...........+++.+. .|.+ ...+.......+..+++.++.++++||+|+|+.+..+..+.+++.+++.+..
T Consensus 238 ~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 238 WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence 44455556666777776 5555 5567777788899999999999999999999999999999999888877765
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-15 Score=137.26 Aligned_cols=250 Identities=13% Similarity=0.060 Sum_probs=155.4
Q ss_pred ccCCchHHHHHHHHHHHHHHhHhhhhhhhhhh----hcch-HHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 016673 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRR-ASIMVGSVSFFIGAILNACAVH------ISMLLLGRIFL 146 (385)
Q Consensus 78 ~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~r~l~ 146 (385)
+++++.++|.+.++.-+..++..|+.|.++|| +||| +.++.+.+..+++.++....++ .+.+++..++.
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~ 119 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL 119 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 36899999999999999999999999999998 7875 4455676777777665544432 45666667777
Q ss_pred HhhhhhhhhhhhHHhhhcC-CCccchhHHHHHHHHHHHHHHHHHHHHHhcc-----ccCCcchhHHHhhhHHHHHHHHHh
Q 016673 147 GMGIGFGNQAVPLYLSEMA-PAKIRGAVNQLFQLTTCLGILVANLINYGTE-----KIHPWGWRLSLGLATVPATLMFVG 220 (385)
Q Consensus 147 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~-----~~~~~~wr~~f~~~~~~~~~~~~~ 220 (385)
+.+.........++.+|+. ++++|.+..++......+|..+++.+..... .....+|+..+.+.++++++..+.
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 7777777777889999988 5588999888888888888777765432111 112357998888877777665544
Q ss_pred h-cccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHc
Q 016673 221 G-LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299 (385)
Q Consensus 221 ~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (385)
. +..+|.+.. ++ ++ +.+.++..+++++++..+......+ ...
T Consensus 200 ~~~~~~e~~~~----~~-~~---------------------------~~~~~~~~~~~~~n~~~~~l~~~~~-----~~~ 242 (444)
T PRK09669 200 CFFMTKERYTP----EV-DN---------------------------SSSVWKDLKLLLGNSQWRIMFIFNV-----VLL 242 (444)
T ss_pred HhCCeEEecCC----CC-cC---------------------------CCCHHHHHHHHhCCchHHHHHHHHH-----HHH
Confidence 4 334553210 00 00 0000112334445444333322211 111
Q ss_pred cchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHH
Q 016673 300 TGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIY 364 (385)
Q Consensus 300 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 364 (385)
..........+++.+..--+++..+.......+..+++.++.+++.||+|+|+.+..+.....+.
T Consensus 243 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~ 307 (444)
T PRK09669 243 TAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVIL 307 (444)
T ss_pred HHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 22222222333333332112233344555556777888889999999999999888776655543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-15 Score=132.45 Aligned_cols=186 Identities=15% Similarity=0.183 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhh
Q 016673 25 YFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGAS 104 (385)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g 104 (385)
..|..+.+..+..++.+...+++.+.. .++.++..| +-+.+..|++.++..++.+++++..|
T Consensus 31 t~wrsi~l~~~~sfl~~v~~sI~~~s~--wpYl~~lD~----------------~A~~~ffG~viaa~slg~~i~~liF~ 92 (488)
T KOG2325|consen 31 TNWRSIYLALLNSFLVAVQFSIYLTSM--WPYLQKLDP----------------TATATFFGLVIAASSLGHAIFSLIFG 92 (488)
T ss_pred CchHhHHHHHHHHHHHhhhheEEEeec--chhhhhcCC----------------CCCcchhhHHHHHHHHHHHhcchhhc
Confidence 344555555566677777777765443 455555432 34788999999999999999999999
Q ss_pred hhhhhhcc-hHHHHHHHHHHHHHHHHH-Hh---hh-hHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHH
Q 016673 105 YVTRSRGR-RASIMVGSVSFFIGAILN-AC---AV-HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQ 178 (385)
Q Consensus 105 ~l~d~~Gr-r~~~~~~~~~~~i~~~~~-~~---~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 178 (385)
+...|.|. |+.++.|.++..++.++. +. .+ ..+.++++|++.|+|.| ......+|+++....++|.++++...
T Consensus 93 ~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~ 171 (488)
T KOG2325|consen 93 IWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATS 171 (488)
T ss_pred ccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhh
Confidence 99999996 889999999999999988 33 23 67889999999999876 45688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCCcc-----------hhHHHhhhHHHHHHHHHhh-cccccchh
Q 016673 179 LTTCLGILVANLINYGTEKIHPWG-----------WRLSLGLATVPATLMFVGG-LFLPETPN 229 (385)
Q Consensus 179 ~~~~~g~~i~~~~~~~~~~~~~~~-----------wr~~f~~~~~~~~~~~~~~-~~~~e~~~ 229 (385)
.+..+|.++||.++.........| +..+-|+.++..++.++.. ++++|.++
T Consensus 172 ~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 172 GGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred hHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 999999999998875544333222 2345567777777766555 45677654
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.8e-15 Score=135.48 Aligned_cols=269 Identities=12% Similarity=-0.006 Sum_probs=167.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhc-----chHHHHHHHHHHH-HHHHHHHhhhhHHHHH-HHHHHHHhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG-----RRASIMVGSVSFF-IGAILNACAVHISMLL-LGRIFLGMGIG 151 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~G-----rr~~~~~~~~~~~-i~~~~~~~~~~~~~~~-~~r~l~G~~~g 151 (385)
+++.++++...+...+...+-.+ +|+++||++ ||+.++++.++.. ++....+..++..... +..++.+++.+
T Consensus 57 g~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a 135 (468)
T TIGR00788 57 GLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKA 135 (468)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 58999999999999999999666 999999998 7777777776663 4433444445544444 48899999999
Q ss_pred hhhhhhhHHhhhcCCCccchhH---HHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccch
Q 016673 152 FGNQAVPLYLSEMAPAKIRGAV---NQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 228 (385)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~ 228 (385)
...++..++..|..+ +++... .+.......+|.++++.+++... +..+||..|++.+...++..+...+++|++
T Consensus 136 ~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~--~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 136 LYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL--DKTLTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred HHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH--HhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999998 544443 33334444578899888865443 445899999998887777755566778763
Q ss_pred hHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHh
Q 016673 229 NSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 308 (385)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (385)
.....+.+.++. .... .. .. ...+..++......+.++++..+......+ +. ....... ....+
T Consensus 213 ~~~~~~~~~~~~-~~~~----------~~-~~-~~~~~~~~~~~~l~~~l~~~~i~~~l~fif-l~-~~~~~~~-~~~~f 276 (468)
T TIGR00788 213 AFVRPRIGTYLE-MNMA----------LL-TL-GVLANVKVQILGLRGAIQLLEIAKPLIFIF-LS-YANLPGA-SGSVF 276 (468)
T ss_pred ccccccccccch-hhhh----------hh-hh-hHHHHHHHHHHHHHHHHhcHHHHHHHHHHH-HH-HhhcCCC-CceeE
Confidence 100000000000 0000 00 00 000000000111222333332222222222 10 1111111 11111
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHH
Q 016673 309 APVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTT 368 (385)
Q Consensus 309 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~ 368 (385)
. ...+..|+++.+.|......+++.+++....+++.+|++.|+.+.++.++.+++....
T Consensus 277 ~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~ 335 (468)
T TIGR00788 277 C-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFD 335 (468)
T ss_pred E-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCc
Confidence 1 1113489999999999999999999999999999999999999998888888776553
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=117.13 Aligned_cols=135 Identities=23% Similarity=0.372 Sum_probs=117.9
Q ss_pred HHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCcc
Q 016673 90 SSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKI 169 (385)
Q Consensus 90 s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 169 (385)
+.+.++..++.++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+....++.|..|+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 44667888999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc-ccc
Q 016673 170 RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF-LPE 226 (385)
Q Consensus 170 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 226 (385)
|+++.++.+....+|..+++.+++... +..+|++.+++.+...++..+..++ .||
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLA--QFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHh--cccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999965444 4468999999888777766555543 454
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-13 Score=123.57 Aligned_cols=139 Identities=22% Similarity=0.305 Sum_probs=111.9
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh-cchHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQA 156 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~ 156 (385)
++++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++..++.++.+..+ +...+.++..+.++|.|...+.
T Consensus 41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~ 120 (493)
T PRK15462 41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN 120 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccccccc
Confidence 57899999999999999999999999999999 999999999999999988776543 2233444444555666777777
Q ss_pred hhHHhhhcCCCc--cchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHH
Q 016673 157 VPLYLSEMAPAK--IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV 219 (385)
Q Consensus 157 ~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 219 (385)
..++++|.+|++ +|..+.++.+...++|..++|.+.+.. .+..||++.|.+.++..++.++
T Consensus 121 ~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L--~~~~Gw~~~F~iaaigm~l~li 183 (493)
T PRK15462 121 VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA--QEEYSWAMGFGLAAVGMIAGLV 183 (493)
T ss_pred HHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH--HhhhChHHHHHHHHHHHHHHHH
Confidence 889999999875 699999999999999999999996544 3456899999887654444333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-15 Score=122.80 Aligned_cols=249 Identities=17% Similarity=0.143 Sum_probs=159.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNAC---AVHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~ 154 (385)
+++.++..++.+.|..-..+.++++|++.|| +|.|..-++-++...++.++.+. .+.+|.+.++|++.|+|.-...
T Consensus 75 ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlA 154 (459)
T KOG4686|consen 75 NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLA 154 (459)
T ss_pred ccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhh
Confidence 5788889999999999999999999999996 78888888888888888888765 6899999999999999988888
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccc-----cCCcchhHH---HhhhHHHHHHHHHhhccccc
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK-----IHPWGWRLS---LGLATVPATLMFVGGLFLPE 226 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~-----~~~~~wr~~---f~~~~~~~~~~~~~~~~~~e 226 (385)
.+-.++...|+..|+.+.++|+......+|+.+--.+...+.. ....+.... ..+....+...++...
T Consensus 155 VaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical---- 230 (459)
T KOG4686|consen 155 VAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICAL---- 230 (459)
T ss_pred hhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 8889999999999999999999999988887654333111110 000011100 0000111111111100
Q ss_pred chhHHHhcCCH-HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHH
Q 016673 227 TPNSLVEQGKL-DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSI 305 (385)
Q Consensus 227 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (385)
..+-. +++.+.+++ ++ .......++-.....++.++.+. ..+++.......+
T Consensus 231 ------~lg~~D~rAerilh~-----------------e~---g~~Ge~pkLtdv~~f~ppfw~~~-iicv~yyva~fPF 283 (459)
T KOG4686|consen 231 ------SLGLSDDRAERILHL-----------------EE---GFLGEEPKLTDVNTFYPPFWVLV-IICVLYYVAWFPF 283 (459)
T ss_pred ------HhhhhhhHHHHHHhh-----------------hc---CcccCCcccccccccCccHHHHH-HHHHHHHHHHHHH
Confidence 00000 111111100 00 00000111111112222222222 2344444445556
Q ss_pred HHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhh
Q 016673 306 LFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAG 358 (385)
Q Consensus 306 ~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~ 358 (385)
....|.++++ +|+|+..++.+.+.......+.+.+.|.++||+|++...+.+.
T Consensus 284 i~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a 337 (459)
T KOG4686|consen 284 ITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASA 337 (459)
T ss_pred hhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHH
Confidence 6667888777 9999999999999888889999999999999999987665443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-14 Score=123.11 Aligned_cols=203 Identities=15% Similarity=0.103 Sum_probs=144.5
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccC-----------
Q 016673 131 ACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH----------- 199 (385)
Q Consensus 131 ~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~----------- 199 (385)
+..++++.++++-++.|.|.+..++....++++..+++++.+.+++.+..+++|..++|.++.......
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 356789999999999999999999999999999999999999999999999999999999976544211
Q ss_pred ---CcchhHHHhhhHHHHHHHHHhhcc--cccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCCh
Q 016673 200 ---PWGWRLSLGLATVPATLMFVGGLF--LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPF 274 (385)
Q Consensus 200 ---~~~wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (385)
...|+++|++.+...++..+.+.+ +||.++ ++.++. .+++ ....
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~-------------------------~~~~-~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV-------------------------SSGD-TTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc-------------------------cccc-ccch
Confidence 137999999766655544444333 454321 000000 0000 0000
Q ss_pred hhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh---cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 016673 275 RNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS---LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 351 (385)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r 351 (385)
++.+++ +...+ .. +..++..........|.+.|+.+ +|+++.+++...+....+.++|+++.+++.||+++|
T Consensus 134 ~~~~~~---~~~~l-~~-~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~ 208 (310)
T TIGR01272 134 TSAFQF---THLVL-GA-LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG 208 (310)
T ss_pred hhHHhh---HHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 112221 22222 22 44555555667788888999874 589999999999999999999999999999999999
Q ss_pred hHHHHhhHHHHHHHHHHH
Q 016673 352 AFFLEAGTEMIIYMVTTL 369 (385)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~ 369 (385)
+.+..+..+..++.++..
T Consensus 209 ~~l~~~~~l~~~~~~l~~ 226 (310)
T TIGR01272 209 RYLAFNAFLAVLLSIGAA 226 (310)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888877766666654443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-13 Score=122.99 Aligned_cols=257 Identities=15% Similarity=0.098 Sum_probs=172.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhc-chHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG-RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~G-rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+.|..|+|.+.+...+...++++++|.++||.+ +|+.+.+..++.++........++++.+++..++..+......|..
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ 112 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLS 112 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHH
Confidence 479999999999999999999999999999986 6777777777777777777788899988888888888888888888
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHH-HH-hccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcC
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI-NY-GTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQG 235 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~-~~-~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 235 (385)
.++..+...+ +++-.|-.-...++|-+++... +. .....+..+..+.+++.+...++.....+.+|+.|+....++
T Consensus 113 dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~ 190 (400)
T PF03825_consen 113 DSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKE 190 (400)
T ss_pred HHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccccccCC
Confidence 8888887753 2223333334444444444222 00 111111112334555555555555444566787662110000
Q ss_pred CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh
Q 016673 236 KLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS 315 (385)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (385)
+.+ +....+..+++|++...... +..+...........|.+.++++
T Consensus 191 ~~~-----------------------------~~~~~~~~~llk~~~~~~Fl-----l~~~l~~~~~~~~~~f~~~yl~~ 236 (400)
T PF03825_consen 191 SVK-----------------------------KLLGLDALKLLKNPRFLVFL-----LAAFLIGISHAAYYTFFSIYLQE 236 (400)
T ss_pred Ccc-----------------------------cccchHHHHHhcCccHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00011123455554432222 23333444456677888999999
Q ss_pred cC-CCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 316 LG-FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 316 ~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
.| .+....+...+...+..++.-...+++.+|+|.|+++.++.+..++=..+++..
T Consensus 237 ~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~ 293 (400)
T PF03825_consen 237 LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF 293 (400)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 77 777788888888889999999999999999999999999999888888777765
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.1e-14 Score=129.12 Aligned_cols=254 Identities=12% Similarity=0.064 Sum_probs=151.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh----cchHHH-HHHHHHHHHHHHHH-Hh----hh--hHHHHHHHHHHH
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR----GRRASI-MVGSVSFFIGAILN-AC----AV--HISMLLLGRIFL 146 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~----Grr~~~-~~~~~~~~i~~~~~-~~----~~--~~~~~~~~r~l~ 146 (385)
+++..++|.+.+...+..++..++.|+++||. ||||.. +.+.+...+..++. .. ++ ..+...+.-++.
T Consensus 40 gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (448)
T PRK09848 40 GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGL 119 (448)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHH
Confidence 57999999999999999999999999999996 777755 55555454444443 21 11 223344455677
Q ss_pred HhhhhhhhhhhhHHhhhcCC-CccchhHHHHHHHH-----HHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHh
Q 016673 147 GMGIGFGNQAVPLYLSEMAP-AKIRGAVNQLFQLT-----TCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 220 (385)
Q Consensus 147 G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (385)
+++.+...+...++..|..+ +++|.+..+.-..+ ..++..++|.++.........+|.....+.+++.++..+.
T Consensus 120 ~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~ 199 (448)
T PRK09848 120 GLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFI 199 (448)
T ss_pred HHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888887777664 46788876665543 3355666776653221110112222222223333333222
Q ss_pred h-cccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHc
Q 016673 221 G-LFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299 (385)
Q Consensus 221 ~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (385)
. ...||+++. +.+. ...+..++++++++....... ..++..
T Consensus 200 ~~~~~~e~~~~---~~~~------------------------------~~~~~~~~~l~~n~~f~~~~~-----~~~~~~ 241 (448)
T PRK09848 200 CFKSTRENVVR---IVAQ------------------------------PSLKISLQTLKRNRPLFMLCI-----GALCVL 241 (448)
T ss_pred HHcCcEeccCC---CccC------------------------------CCHHHHHHHHhCCchHHHHHH-----HHHHHH
Confidence 2 335554310 0000 000112344555544322222 223333
Q ss_pred cchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHH
Q 016673 300 TGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 300 ~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
..........|++.++ .|.++...+.......++.+++.++.+++.||+++|+.+.++.++.+++.+.+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~ 313 (448)
T PRK09848 242 ISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW 313 (448)
T ss_pred HHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566777776 7776655555555556778889999999999999999999888887777666654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-13 Score=124.15 Aligned_cols=246 Identities=9% Similarity=0.031 Sum_probs=154.0
Q ss_pred ccCCchHHHHHHHHHHHHHHhHhhhhhhhhhh----hcchHHH-HHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 016673 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRRASI-MVGSVSFFIGAILNACAVH------ISMLLLGRIFL 146 (385)
Q Consensus 78 ~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~----~Grr~~~-~~~~~~~~i~~~~~~~~~~------~~~~~~~r~l~ 146 (385)
+++++..+|.+..+.-+--++.-|+.|.++|| +||||.. +++.+..+++.+++-..++ ...+.+.-++.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 36899999999999999999999999999996 7987555 4566777777766554432 34455666777
Q ss_pred HhhhhhhhhhhhHHhhhcCC-CccchhHHHHHHHHHHHHHHHHHHHHHhccc-----cCCcchhHHHhhhHHHHHHHHHh
Q 016673 147 GMGIGFGNQAVPLYLSEMAP-AKIRGAVNQLFQLTTCLGILVANLINYGTEK-----IHPWGWRLSLGLATVPATLMFVG 220 (385)
Q Consensus 147 G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~ 220 (385)
.++.......-.++..|..+ ++||.+..++...+..+|..+++.+...... ....+|+....+.+++.++....
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999987 6899999999999999888777666322211 11246888777777666555444
Q ss_pred hc-ccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHc
Q 016673 221 GL-FLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299 (385)
Q Consensus 221 ~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (385)
.+ ..+|.++. +.++ ...++.++..++++..+.... ..+...
T Consensus 200 ~~~~~kE~~~~-----~~~~----------------------------~~~~~~l~~~~~Nk~~~~l~~-----~~~~~~ 241 (460)
T PRK11462 200 CFFTTKERVEA-----PPTT----------------------------TSMREDLRDIWQNDQWRIVGL-----LTIFNI 241 (460)
T ss_pred HHhcceeccCC-----CccC----------------------------CCHHHHHHHHhCChHHHHHHH-----HHHHHH
Confidence 43 34553210 0000 000111223333333222211 112222
Q ss_pred cchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHH
Q 016673 300 TGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMI 362 (385)
Q Consensus 300 ~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~ 362 (385)
...........++.+. .|. +...+.......++.+++.++++++.||+++|+....+..+..
T Consensus 242 ~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~ 304 (460)
T PRK11462 242 LAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLA 304 (460)
T ss_pred HHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 2222222223333333 332 2334556667778889999999999999999887665444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-16 Score=145.80 Aligned_cols=286 Identities=15% Similarity=0.174 Sum_probs=3.0
Q ss_pred cccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--------------------
Q 016673 75 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-------------------- 134 (385)
Q Consensus 75 ~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~-------------------- 134 (385)
++.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++.+++++++++-+
T Consensus 30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 455579999999999999999999999999999999999999999999999999886511
Q ss_pred ------------------------------hHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHH
Q 016673 135 ------------------------------HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLG 184 (385)
Q Consensus 135 ------------------------------~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 184 (385)
-++.+++++++.|+|....++...+|+-|..++++-+..+|+..+...+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 03577889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccC----------------Cc----chhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHH
Q 016673 185 ILVANLINYGTEKIH----------------PW----GWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVL 244 (385)
Q Consensus 185 ~~i~~~~~~~~~~~~----------------~~----~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 244 (385)
.++|.++++...... +. .|..-|++.+...++..+..+++|+.-+...+..+.++..+
T Consensus 190 Pa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~-- 267 (539)
T PF03137_consen 190 PALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSE-- 267 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhh--
Confidence 999998876444210 01 26666666677666666666666654322100000000000
Q ss_pred HHHhCCC-chhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCch
Q 016673 245 EKVRGTA-NVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGA 322 (385)
Q Consensus 245 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~ 322 (385)
.+..... +...+.+......+..++.....+++++++ ..+... +...........+.+|.|.|++. ++.++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np----~f~~~~-la~~~~~~~~~G~~tF~pKylE~QF~~sas~ 342 (539)
T PF03137_consen 268 RKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNP----VFMCLI-LAGVFESFIVSGFATFLPKYLESQFGLSASQ 342 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhhhhhcccccccccchhhhhhhHHHHHHHHhcCh----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 0000000 000000000000011111122333333333 333333 55666677778899999999998 9999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhcccc--chhHHHHhhHHHHHHHHH
Q 016673 323 ALYSSVITGI-ALCIAALISMAFVDKFG--RRAFFLEAGTEMIIYMVT 367 (385)
Q Consensus 323 ~~~~~~~~~~-~~~~~~~~~g~l~d~~~--~r~~~~~~~~~~~~~~~~ 367 (385)
+..+.....+ +.++|.+++|++.+|++ .|+.+....+...+..++
T Consensus 343 A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~ 390 (539)
T PF03137_consen 343 ASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVIL 390 (539)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 8888766654 67788899999999985 455555555555554444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=131.92 Aligned_cols=281 Identities=15% Similarity=0.166 Sum_probs=197.4
Q ss_pred cccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh-----------h--------
Q 016673 75 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-----------H-------- 135 (385)
Q Consensus 75 ~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~-----------~-------- 135 (385)
++.++++.++.|++.+.+-++..+...+..+..-|..|-+.+-+|.++.+++++++++-+ +
T Consensus 124 ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~ 203 (735)
T KOG3626|consen 124 ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP 203 (735)
T ss_pred hhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence 455578999999999999999999999999999999999999999999999999988731 0
Q ss_pred --------------------------------H-HHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHH
Q 016673 136 --------------------------------I-SMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTC 182 (385)
Q Consensus 136 --------------------------------~-~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 182 (385)
+ ..++++.++.|+|....++...+|+-|...+++-+..+|+......
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~ 283 (735)
T KOG3626|consen 204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI 283 (735)
T ss_pred ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence 1 2566789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccC-C----------------cchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHH
Q 016673 183 LGILVANLINYGTEKIH-P----------------WGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLE 245 (385)
Q Consensus 183 ~g~~i~~~~~~~~~~~~-~----------------~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 245 (385)
+|.++|.+++....... + -.|..-|++.+.+.++..+..+++|+..+...++ .++++ .+
T Consensus 284 lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~---~~~~~-~~ 359 (735)
T KOG3626|consen 284 LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKR---KRARD-LH 359 (735)
T ss_pred hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccccc---chhhh-hc
Confidence 99999999976544211 0 1366777888888888888888887654321111 00000 00
Q ss_pred HHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHH
Q 016673 246 KVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAAL 324 (385)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~ 324 (385)
......+ ..++.....+.-++.....+.+++++ +.+... +...+....+..+.+|+|.|+++ +|.++..+.
T Consensus 360 ~~k~~~~---~~~~~~~~~~~ikdfp~s~~~ll~N~----if~~~~-l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An 431 (735)
T KOG3626|consen 360 VLKTESG---GAKSDKTFGKKIKDFPKSIKRLLSNP----IFMLVV-LASVIESLAITGYITFLPKYLETQFGISASLAN 431 (735)
T ss_pred ccccccc---cccCCcchhhhHHHHHHHHHHHhcCc----hHHHHH-HHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHH
Confidence 0000000 00000000111122223344444443 344444 56667777888999999999998 999999998
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhcccc--chhHHHHhhHHHHHHHHH
Q 016673 325 YSSVITGI-ALCIAALISMAFVDKFG--RRAFFLEAGTEMIIYMVT 367 (385)
Q Consensus 325 ~~~~~~~~-~~~~~~~~~g~l~d~~~--~r~~~~~~~~~~~~~~~~ 367 (385)
.+....++ +..+|.+++|++++|++ .|.......+...+.++.
T Consensus 432 ~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 432 ILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred HHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 88866655 55678888999999985 355555555555554444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-12 Score=117.64 Aligned_cols=252 Identities=19% Similarity=0.161 Sum_probs=170.4
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHH-HHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 82 NQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVG-SVSFFIGAILNACA--VHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 82 ~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~-~~~~~i~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
.+..++..++..+..++..|+.|.++|+-|+||.++.. ..+..+++....+. .+++...+.-++.-++.+.......
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999999999999999999977666554 44445566666653 3455555556666678888888999
Q ss_pred HHhhhcCCCccc--------------------------hhHHHHHHHHHHHHHHHHHHHHHhccccC------CcchhHH
Q 016673 159 LYLSEMAPAKIR--------------------------GAVNQLFQLTTCLGILVANLINYGTEKIH------PWGWRLS 206 (385)
Q Consensus 159 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~i~~~~~~~~~~~~------~~~wr~~ 206 (385)
+++.|..+++++ ++..+.-.....+|.++.-.+........ ..+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999888 89999988888888888777654332221 1345788
Q ss_pred HhhhHHHHHHHH-HhhcccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcch
Q 016673 207 LGLATVPATLMF-VGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQ 285 (385)
Q Consensus 207 f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (385)
+.+.++.-++.. ...+++||.|+....++..+... ...++..+.+++..+ .+
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~-----------------------~g~~~l~~t~k~~~~----~~ 281 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLR-----------------------FGFKRLWRTFKEIRK----LR 281 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHH-----------------------HHHHHHHHHHHHHHh----Ch
Confidence 877777655554 44466788764210000000000 001111112222222 22
Q ss_pred HHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccch--hHHHHhhHHH
Q 016673 286 LVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR--AFFLEAGTEM 361 (385)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r--~~~~~~~~~~ 361 (385)
.....+ +.+++..-+...+......|.++ +|++..+...+.....+.+++|+++.+++.||+|.| +.+..+.+..
T Consensus 282 ~~~~fL-ia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 282 QLFLFL-IAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW 359 (477)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 222233 46666667777788888888775 999999999999999999999999999999999988 6666555444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-12 Score=111.53 Aligned_cols=257 Identities=10% Similarity=0.123 Sum_probs=160.4
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.+..+++.+....+....+..++.|.++||+|||+.-++-+++..++++ +-..+|++.++++|++.|++.+..+.+-.
T Consensus 65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FE 143 (354)
T PF05631_consen 65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFE 143 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999996 44568999999999999999999999888
Q ss_pred HH-hhhcC----CCccchhHHHHHH-HHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHH
Q 016673 159 LY-LSEMA----PAKIRGAVNQLFQ-LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSL 231 (385)
Q Consensus 159 ~~-i~~~~----~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~ 231 (385)
++ +.|+- |++..+...+... ...++-.+.+.+++-......+.|-..+|....+..++..++. ...+|.+...
T Consensus 144 sW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~ 223 (354)
T PF05631_consen 144 SWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDT 223 (354)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 86 45553 2333333333333 2233334445555433333223344678888777766665554 3456653210
Q ss_pred HhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHH
Q 016673 232 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPV 311 (385)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (385)
.+..+. .+..++.++.+.++ ++.+.... .........+.....|.|.
T Consensus 224 ---~~~~~~--------------------------~~~~~~a~~~i~~d---~ril~LG~-~qslFE~smy~FVflWtPa 270 (354)
T PF05631_consen 224 ---SSSSSL--------------------------SGSFREAWRAILSD---PRILLLGL-IQSLFEGSMYLFVFLWTPA 270 (354)
T ss_pred ---ccccch--------------------------HHHHHHHHHHHHcC---chhHHHHH-HHHHHHHHHHHheeeeece
Confidence 000000 00001112223322 23333333 4555566656666667787
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhh-ccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 312 IFQSLGFGSGAALYSSVITGIALCIAALISMAFV-DKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 312 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
+-.+ + ...--|++++.+.+..++|+.+..++. ++......+...+.+.++++.+-.+.
T Consensus 271 L~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l~~pv~~ 329 (354)
T PF05631_consen 271 LDPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSLAIPVVT 329 (354)
T ss_pred ecCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7522 1 123358999999999999998886554 45444445544444444444444443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=132.98 Aligned_cols=141 Identities=14% Similarity=0.015 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhc
Q 016673 85 LTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEM 164 (385)
Q Consensus 85 ~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~ 164 (385)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.+..++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677789999999999999999999999999999999999999998888888889999998888999999999999
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccch
Q 016673 165 APAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 228 (385)
Q Consensus 165 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~ 228 (385)
+|.++|++++|+......+|.+++|++++.+... +...+|++.++..++..++..++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~---~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI---TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999996544432 355677777777777666666778874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-13 Score=123.50 Aligned_cols=145 Identities=16% Similarity=0.162 Sum_probs=119.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++.+.+++.+....+..++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.+++.|...+...
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~ 327 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGM 327 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889888887788888999999999999999988887766666555555677888888899999988888777788
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccccc
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 226 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (385)
.+..|..|+ +|+++.++.+....+|..++|.+++... +..+|+..|++.+++.++.++..++.||
T Consensus 328 ~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 328 LYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVA--EIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888999875 5899999999999999999999965544 4468999999888888877777766664
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=125.27 Aligned_cols=148 Identities=14% Similarity=0.211 Sum_probs=123.8
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhhhhhhhh
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV----HISMLLLGRIFLGMGIGFGNQA 156 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~ 156 (385)
+.++.+...++..++..++.++.|+++||+|||+++..+.++.+++........ +++.+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999988877666532 3466778899999999988899
Q ss_pred hhHHhhhcCCCccchhHHHHHH-HHHHHHHHHHHHHHHhccccCC----cchhHHHhhhHHHHHHHHHhh-cccccch
Q 016673 157 VPLYLSEMAPAKIRGAVNQLFQ-LTTCLGILVANLINYGTEKIHP----WGWRLSLGLATVPATLMFVGG-LFLPETP 228 (385)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~~~~~~~----~~wr~~f~~~~~~~~~~~~~~-~~~~e~~ 228 (385)
...++.|++|+++|++++++.+ ...++|..+||++++......+ +||+..|.+.++..++..++. ++++|+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999997 6788999999999776554322 579999998888777765555 4567663
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-12 Score=116.49 Aligned_cols=259 Identities=15% Similarity=0.145 Sum_probs=183.5
Q ss_pred cccCCchHHHHHHHHHHHHHHhHhhhhhhhhhh----hcchHH-HHHHHHHHHHHHHHHHhhhh------HHHHHHHHHH
Q 016673 77 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRRAS-IMVGSVSFFIGAILNACAVH------ISMLLLGRIF 145 (385)
Q Consensus 77 ~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~----~Grr~~-~~~~~~~~~i~~~~~~~~~~------~~~~~~~r~l 145 (385)
.+++++..+|.+..+.=+--++.-|+.|.++|| +||+|. ++.+.+-.++.+.++-.+++ ....++.-.+
T Consensus 42 v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l 121 (467)
T COG2211 42 VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYML 121 (467)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHH
Confidence 346899999999999999999999999999995 786655 56677888888888777663 4455666788
Q ss_pred HHhhhhhhhhhhhHHhhhcCC-CccchhHHHHHHHHHHHHHHHHHHHH-----HhccccCCcchhHHHhhhHHHHHHHHH
Q 016673 146 LGMGIGFGNQAVPLYLSEMAP-AKIRGAVNQLFQLTTCLGILVANLIN-----YGTEKIHPWGWRLSLGLATVPATLMFV 219 (385)
Q Consensus 146 ~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~-----~~~~~~~~~~wr~~f~~~~~~~~~~~~ 219 (385)
.+++......+-.++..|+.+ ++||.+..+.-..+..+|..+...+. .........||+....+.+++.++..+
T Consensus 122 ~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l 201 (467)
T COG2211 122 LGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLL 201 (467)
T ss_pred HHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 899999999999999999885 68899999999998888865554332 112222246888888888887777766
Q ss_pred hhcc-cccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChh----hhhccCCcchHHHHHhHHH
Q 016673 220 GGLF-LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFR----NLFKKKNRPQLVIGALGIP 294 (385)
Q Consensus 220 ~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 294 (385)
.+++ .+|.+.. .++.+ +..+.+++ .+++++...... +.
T Consensus 202 ~~~~~v~ER~~~---~~~~~-----------------------------~~~~~~~~~~~~~~~~Nrp~~~~l-----~~ 244 (467)
T COG2211 202 FCFFNVKERVVE---TQPTK-----------------------------TGVKLKLKDSFLLIFKNRPLLLLL-----LM 244 (467)
T ss_pred HHHHHhhcccCc---cccCc-----------------------------ccccccHHHHHHHHHccchHHHHH-----HH
Confidence 6554 6665420 00000 00122222 233333222222 23
Q ss_pred HHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHh
Q 016673 295 AFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSN 372 (385)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~ 372 (385)
..+...+.........+|.+. .|.+.............+.+++.++..++.+|+|+|+...++.++.+++..++.+..
T Consensus 245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~ 323 (467)
T COG2211 245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP 323 (467)
T ss_pred HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence 444445555556666666665 777777777888888888888899999999999999999999999888888887776
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=117.46 Aligned_cols=144 Identities=24% Similarity=0.325 Sum_probs=130.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRA-SIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+...+..++.|++.+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 468899999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccc
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 224 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (385)
..++.|..|+++|++.+++.+....+|..+++.+.+... +..+|+..+.+.+++.++..+..+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~--~~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL--DTGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCcchHHHHHHHHHHHHHHHheec
Confidence 999999999999999999999999999999999955444 35589999999988888776665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.5e-13 Score=120.52 Aligned_cols=142 Identities=16% Similarity=0.084 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhh
Q 016673 84 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSE 163 (385)
Q Consensus 84 ~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~ 163 (385)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+..++.+.....+|.+.+++.+++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34566678888899999999999999999999999999888888888888888888899999999999888888888889
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccc
Q 016673 164 MAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPET 227 (385)
Q Consensus 164 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (385)
..|+++|+++.++.+....+|..+++++.+.. .+..||++.+++.+...++..+..++++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLV--ASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999998888885433 344589999998888877776666555443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.4e-13 Score=123.53 Aligned_cols=146 Identities=12% Similarity=0.142 Sum_probs=122.7
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhH
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPL 159 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 159 (385)
.+..+.+++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.++++|.+.+++.+++.|++.+...+....
T Consensus 259 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 338 (420)
T PRK09528 259 QGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFK 338 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999899999999999999999999998888888889
Q ss_pred HhhhcCCCccchhHHHH-HHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccc
Q 016673 160 YLSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPET 227 (385)
Q Consensus 160 ~i~~~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 227 (385)
++.|.+|++.|+...+. ++....+|..+++.+.+.. .+..||+..|.+.++..++..+.. +..+++
T Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l--~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 339 YITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNL--YDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHH--HHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999887655 6777889999999995444 445689999998877766655444 344443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-12 Score=111.12 Aligned_cols=257 Identities=16% Similarity=0.189 Sum_probs=148.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHH--HHHHHH-HHhh----hhHH-HHHHHHHHHHhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSF--FIGAIL-NACA----VHIS-MLLLGRIFLGMGI 150 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~--~i~~~~-~~~~----~~~~-~~~~~r~l~G~~~ 150 (385)
|++.+++|.+.++..+...+.+|+.|.++||.|.||-++....+. ..+.+. ..+. .|.+ ..+++-+..|+..
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999776554443322 222222 2222 2332 3333444455555
Q ss_pred hhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccc-ccchh
Q 016673 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETPN 229 (385)
Q Consensus 151 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~~ 229 (385)
....++..+++.++. ++.+.-.|-.-...++|.+++..+++.+... +-+..|++....+++..++.++. |+.++
T Consensus 119 ~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i---~p~~~fwi~s~~~~il~lll~~~~~~~~~ 193 (412)
T PF01306_consen 119 NAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI---NPNIIFWIASAAAIILLLLLLLLKPDVPP 193 (412)
T ss_dssp TTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSS---SSS
T ss_pred cccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee---CccHHHHHHHHHHHHHHHHHHHcCCcCch
Confidence 566666666666554 2334445555666677777777776544432 34567777666555554444333 33322
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChh---hhhccCCcchHHHHHhHHHHHHHccchHHHH
Q 016673 230 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFR---NLFKKKNRPQLVIGALGIPAFQQLTGMNSIL 306 (385)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (385)
.....+..+ .++++.+.+ +++|.++.+...+ ......+.+..+.
T Consensus 194 ~~~~~~~~~----------------------------~~~~~~~~~~~~~l~k~~~fw~~~l-----~v~g~~~~Y~vfd 240 (412)
T PF01306_consen 194 QAEVADALG----------------------------AKKDKVSLKDVLSLFKMRNFWFFVL-----FVIGVAAIYDVFD 240 (412)
T ss_dssp SS-SSTTSS----------------------------S------HHHHHHHTTSHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred hhhhhcccc----------------------------cCCCCCcHHHHHHHhcchhHHHHHH-----HHHHHHHHHHHHH
Confidence 110000000 000111233 3344443333222 2223334456666
Q ss_pred HhHHHHHHhcC----CCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHhh
Q 016673 307 FYAPVIFQSLG----FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSNM 373 (385)
Q Consensus 307 ~~~~~~~~~~g----~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~ 373 (385)
...|.|...+- .+....|.+.+...+..++...++.++.+|+|.|+.++++..++.+=..+.++..+
T Consensus 241 qqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~ 311 (412)
T PF01306_consen 241 QQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATN 311 (412)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcc
Confidence 66677766532 33455788888888999999999999999999999999999998888887776544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=118.63 Aligned_cols=138 Identities=11% Similarity=0.016 Sum_probs=116.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHI--SMLLLGRIFLGMGIGFGNQA 156 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~r~l~G~~~g~~~~~ 156 (385)
+.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+...+.++. ..+....++.|++.+...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 315 (377)
T TIGR00890 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISL 315 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhc
Confidence 3577788999999999999999999999999999999999999998888877776643 33456678889888888888
Q ss_pred hhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHH
Q 016673 157 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMF 218 (385)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 218 (385)
.+.++.|.+|+++|+++.++.+....+|..++|.+.+.. .+..||++.|.+.++..++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l--~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHA--LTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH--HhhhchhhHHHHHHHHHHHhc
Confidence 889999999999999999999999999999999995544 345689999988777666543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.2e-12 Score=114.09 Aligned_cols=145 Identities=16% Similarity=0.187 Sum_probs=119.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++.+.+++.+.......++.++.|++.||+|||+.+..+.++..+........++.+.+.+.+++.|++.+...+...
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888887777888899999999999999999888877766666666678888888899999999998888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccccc
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 226 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (385)
.++.|..|+ +|+++.++.+....+|..++|.+++... +..||+..|++.++..++..+...+++|
T Consensus 311 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 311 LYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILA--ERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhccchhHHHHHHHHHHHHHHHHheecC
Confidence 999999876 5679999999999999999999965443 3458999999888887777766655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=117.88 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhc
Q 016673 85 LTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEM 164 (385)
Q Consensus 85 ~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~ 164 (385)
.++..+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++.+.+.+++++.|++.+...+...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45566677788899999999999999999999999999999988888888888888899999999998888888889999
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhc
Q 016673 165 APAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL 222 (385)
Q Consensus 165 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (385)
+|+++|+++.++.+....+|..++|.+.+... ++.||+..|.+.+...++..+..+
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~--~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLA--TSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999955443 445899999988887777655543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-12 Score=117.08 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=120.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++.+.+...+...++..++.++.|++.||+|||+.+..+.+...++.+.....++.+.+.+..++.|++.+...+...
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY 330 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46888899999999999999999999999999999999888777777777777777888888888899998888888899
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccc
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLP 225 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 225 (385)
+++.|.+|+++|+++.++.+....+|..++|.+++..... ..+|...++......++..+..+++.
T Consensus 331 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL-GRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc-CCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999996555432 23566667666666555555544443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-11 Score=105.49 Aligned_cols=261 Identities=11% Similarity=0.137 Sum_probs=164.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhc-----chHHHHH-HHHHHHHHHHHHHhh-----h-------hH--H-
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG-----RRASIMV-GSVSFFIGAILNACA-----V-------HI--S- 137 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~G-----rr~~~~~-~~~~~~i~~~~~~~~-----~-------~~--~- 137 (385)
+++....+.+.+...+... ..+.+|+.+|+.+ ||..+++ |..+...+..+..++ . +. +
T Consensus 11 ~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~ 89 (403)
T PF03209_consen 11 GVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGL 89 (403)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHH
Confidence 4677778888887776654 6999999999999 8877655 555555555554442 2 11 2
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcc-hhHHHhhh--HHH
Q 016673 138 -MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG-WRLSLGLA--TVP 213 (385)
Q Consensus 138 -~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-wr~~f~~~--~~~ 213 (385)
...+.-.+.|+|.+...+...+++.|..|+++|+++.++...+..+|.+++..+.+.. .++++ -|..-.+. +++
T Consensus 90 ~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~l--L~~~s~~rL~~v~~~~a~i 167 (403)
T PF03209_consen 90 ALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRL--LDPFSPERLIQVIQGVALI 167 (403)
T ss_pred HHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHH--ccccCHHHHHHHHHHHHHH
Confidence 3345578889999999999999999999999999999999999999999999884433 23322 22222222 222
Q ss_pred HHHH-HHhhcccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhH
Q 016673 214 ATLM-FVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 292 (385)
Q Consensus 214 ~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (385)
.+.. ++..+- .|.+. ...+...+ +++...+..++++..++..++....++
T Consensus 168 ~~~l~~ia~wg-~E~r~-~~~~~~~~--------------------------~~~~~f~~a~~~~~~~~~a~~f~~fl~- 218 (403)
T PF03209_consen 168 ALLLNLIALWG-QEPRR-SRRAAAAE--------------------------RPRPPFREAWRQVWASPQARRFFVFLF- 218 (403)
T ss_pred HHHHHHHHHHh-cccCC-cccccCCC--------------------------CCCccHHHHHHHHHhCCChhHHHHHHH-
Confidence 2222 222222 22211 00000000 000011223445555555555444333
Q ss_pred HHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhc-cccchhHHHHhhHHHHHHHHHHHH
Q 016673 293 IPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVD-KFGRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
....++......+-.|-.+ +|++..+...+....+.+.+++....+++.. |.++++....+.....+++.++..
T Consensus 219 ----l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 219 ----LGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred ----HHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 1222233333333333344 8999999999999999999999999888766 677888888888888888888777
Q ss_pred Hhhhc
Q 016673 371 SNMIQ 375 (385)
Q Consensus 371 ~~~~~ 375 (385)
.....
T Consensus 295 a~~~~ 299 (403)
T PF03209_consen 295 AGPLG 299 (403)
T ss_pred HHhcc
Confidence 65443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-11 Score=105.38 Aligned_cols=259 Identities=17% Similarity=0.130 Sum_probs=175.4
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHH-HHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhhhhhhhhh
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASI-MVGSVSFFIGAILNACAVH---ISMLLLGRIFLGMGIGFGNQA 156 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~-~~~~~~~~i~~~~~~~~~~---~~~~~~~r~l~G~~~g~~~~~ 156 (385)
+.+..+...++..+..++..|+-|.++|+.|+||.. -....+..++++...+.++ ++..++.-.+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 567888999999999999999999999999966554 4455555666666666544 455556678888999999999
Q ss_pred hhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccc----------------cCCcchhHHHhhhHHHHHHHHH-
Q 016673 157 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK----------------IHPWGWRLSLGLATVPATLMFV- 219 (385)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~----------------~~~~~wr~~f~~~~~~~~~~~~- 219 (385)
-.+++.+..++++-++..+.-.....+|+.+.-+....... .++..=|..+.+.++-.++..+
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 99999999999888888777666666666655444211110 1334567777777776655544
Q ss_pred hhcccccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHc
Q 016673 220 GGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQL 299 (385)
Q Consensus 220 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (385)
.++..++.++- +....++ -...-++.+.+++++.+++. +...+ +..+...
T Consensus 216 m~~~v~~~~~~---~~~~~~~----------------------l~~g~k~L~~t~k~i~~~~~----i~~FL-iA~~~~~ 265 (438)
T COG2270 216 MILNVHDAEKI---SSPPPTA----------------------LRNGFKELKSTFKEIRGRKN----LVLFL-IARFFYI 265 (438)
T ss_pred HHhcccccccc---cccchHH----------------------HHHHHHHHHHHHHHHhcccc----hHHHH-HHHHHHH
Confidence 34555554420 0000000 00111112233444444332 22222 4566666
Q ss_pred cchHHHHHhHHHHHH-hcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHH
Q 016673 300 TGMNSILFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTL 369 (385)
Q Consensus 300 ~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 369 (385)
-+.+........+-. ++|++..+...+.....+..++|+++.|++.||+|.|+++..+.++..+..+...
T Consensus 266 DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~ 336 (438)
T COG2270 266 DGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI 336 (438)
T ss_pred hhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH
Confidence 677778888888877 5999999999999999999999999999999999999888877766665554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=112.39 Aligned_cols=139 Identities=10% Similarity=0.020 Sum_probs=121.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++.+.|.+.+...++..++.++.+++.||+|+|+.+.++.+...+..+..++++|.+.+++.++++|++.+...+...
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHH-HHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh
Q 016673 159 LYLSEMAPAKIRGAVNQLFQ-LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG 221 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 221 (385)
.++.+. |+++|++..++++ ...++|..+++.+++.... ..|+ ..|++.+.++++..+..
T Consensus 316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~--~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP--TLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccH-HHHHHHHHHHHHHHHHH
Confidence 999998 9999999999976 5788999999999765554 4465 55666666666554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-10 Score=103.95 Aligned_cols=144 Identities=22% Similarity=0.307 Sum_probs=122.3
Q ss_pred ccCCchHHHHHHHHHHHHHHhHhhhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhh
Q 016673 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 78 ~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~ 154 (385)
.++++++..-+.+.|..-.-+..+++|+++|| +|+|+++++|.++..+|.++.+.+. +...+.++-.+.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 45788888888888887778889999999999 5999999999999999999999984 78899999999999999999
Q ss_pred hhhhHHhhhcCCCc--cchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc
Q 016673 155 QAVPLYLSEMAPAK--IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 223 (385)
Q Consensus 155 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (385)
+...++++|.+|++ +|-..+++++++.++|+.++|++.... .+..||...|.+.++-....++..+.
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~--~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLL--AINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHH--HHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999864 377788999999999999999995443 34568999998887766665554433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-11 Score=110.51 Aligned_cols=149 Identities=9% Similarity=0.013 Sum_probs=107.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh---h-hhHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC---A-VHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~---~-~~~~~~~~~r~l~G~~~g~~~ 154 (385)
+.+......+.........++.++.|+++||+|||++++.+.++..++.+.... . ++.+.+++..++.|++.+...
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV 361 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566677888899999999999999998887766655443322 2 234444556677788888888
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHH-HHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccc
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQL-TTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPET 227 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (385)
+...+++.|.+|++.|+.+.++... +..+|..++|.+.+......+.+|+..+...++..++..+..+.++|+
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 8889999999999999988888544 455888899988665544333468888887777777776666666664
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-11 Score=109.75 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=112.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAI-LNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+.+..+.+++.+...++..++.++.|+++||+|||+... +..+..++.. .....++.+.++++.++.|++.+...+..
T Consensus 237 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 315 (390)
T PRK03545 237 GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAM 315 (390)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHH
Confidence 467888999999999999999999999999999887544 4444444433 34556788888889999999888777777
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 223 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (385)
...+.|..| ++|++++++......+|..+||++++... ++.|++..|.+.+.+.++.++....
T Consensus 316 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~--~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 316 QVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS--LHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccChhHHHHHHHHHHHHHHHHHHH
Confidence 888888876 58899999999999999999999954444 5678999999988888776665543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-11 Score=111.50 Aligned_cols=148 Identities=11% Similarity=0.106 Sum_probs=123.1
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++.+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.+...+.++.+...++.++.|++.+...+...
T Consensus 255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 334 (417)
T PRK10489 255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQY 334 (417)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999998888888888888888888888888888888899999999888888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHH-HHhhcccccch
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLM-FVGGLFLPETP 228 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~~ 228 (385)
+++.|..|+++|++++++......+|..+|+.+.+... +..|++..+.+.+...++. .+....+||.+
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 335 TLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLG--AMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH--HHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999965444 3457777777666555544 44445566654
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-11 Score=109.70 Aligned_cols=144 Identities=14% Similarity=0.055 Sum_probs=118.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.+..+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+...+....+|.+.+.+..++.|++.+...+...
T Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 316 (394)
T PRK03699 237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTII 316 (394)
T ss_pred CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999988887777777777777887777788899998888888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccc
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLP 225 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 225 (385)
++..|..|+ ++++..+.......+|..++|.+.+... +..||+..+++.++..++..+.....+
T Consensus 317 ~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 317 TLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIV--AHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHH--HHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 888887754 4678888888889999999999965444 345899999888877777665554444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=113.64 Aligned_cols=145 Identities=14% Similarity=0.031 Sum_probs=106.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAIL--NACAVHISMLLLGRIFLGMGIGFGNQA 156 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~r~l~G~~~g~~~~~ 156 (385)
+.+..+.++..+...++..++.+++|+++||+|||+.++....+..++... ....++.+...+.+++.|+........
T Consensus 290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 369 (467)
T PRK09556 290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL 369 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence 578889999999999999999999999999999998877655444443322 223456667778888888654443333
Q ss_pred hhHHhhhcCCCccchhHHHHHHHHHHH-HHHHHHHHHHhccc----------cCCcchhHHHhhhHHHHHHHHHhhcc
Q 016673 157 VPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEK----------IHPWGWRLSLGLATVPATLMFVGGLF 223 (385)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~~~~----------~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (385)
......|.+|+++|+.+.|+.+....+ |..++|.+.+.... ....+|+..|.+..+..++..+..++
T Consensus 370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 446677999999999999999988886 76888888554444 00357999998877766666554443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-10 Score=98.73 Aligned_cols=287 Identities=12% Similarity=0.096 Sum_probs=179.8
Q ss_pred cCCchHHH-HHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLT-LFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~-~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..++.|++.+. ..+-
T Consensus 36 n~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay 114 (412)
T PF01770_consen 36 NFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAY 114 (412)
T ss_pred CCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHH
Confidence 56666654 344455667778888999999999999999999999999999999999999999999999998765 6788
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCH
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKL 237 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 237 (385)
.+++-...|+++-.++.+...++..+|..++.++|-.+....+.+++....+......++++..+++|..++...-+++.
T Consensus 115 ~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~ 194 (412)
T PF01770_consen 115 YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKP 194 (412)
T ss_pred HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccC
Confidence 89999999999999999999999999999999998766666667788888887777777777777788766533222111
Q ss_pred HHHHH----HHHHHhCCCchh-----HHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHh
Q 016673 238 DEARK----VLEKVRGTANVD-----AEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 308 (385)
Q Consensus 238 ~~~~~----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (385)
++..+ ..+...+..+.. .+..........-+...+.+++..+++...... +-+....+++.....|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WS-----lWWa~atcgy~qv~nY 269 (412)
T PF01770_consen 195 PAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWS-----LWWAFATCGYYQVINY 269 (412)
T ss_pred ccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHH-----HHHHHHHhHHHHHHHH
Confidence 11000 000000000000 000000000000011111222233333222111 2344455566666666
Q ss_pred HHHHHHhc---CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH--HhhHHHHHHHHHHHHH
Q 016673 309 APVIFQSL---GFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL--EAGTEMIIYMVTTLHS 371 (385)
Q Consensus 309 ~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~--~~~~~~~~~~~~~~~~ 371 (385)
...+-++. +-....-|..-+...+.+.++.+..|++..+..+..-+. ....+.+..++++...
T Consensus 270 vQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t 337 (412)
T PF01770_consen 270 VQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT 337 (412)
T ss_pred HHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666655 223334577777788888888888998855555533333 2233334444444443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-11 Score=108.89 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=112.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++++.++..+...++..+++++.|++.||+|+|+++..+..+..++.+... + ........++.|++.....|...
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAM 307 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHH
Confidence 36788889999999999999999999999999999999888888777665443 2 23444567888888777889999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 223 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (385)
+++.|..|+++++.+.+......++|..+||.+++... ++.+|++.|.+.+...++..+..++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~--~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM--QNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCccHHHHHHHHHHHHHHHHHHh
Confidence 99999999888888888888899999999999965443 4557999998877777666554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=114.05 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=112.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh--cchHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR--GRRASIMV--GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~--Grr~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 154 (385)
+.+..+.+++.+...++..+++++.|+++||. ++|+...+ +.++.+++.+.+...++++.+++.+++.|++.+...
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence 46888999999999999999999999999973 34433333 344445555666778899999999999999999999
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCc-chhHHHhhhHHHHHHHHH
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPW-GWRLSLGLATVPATLMFV 219 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~-~wr~~f~~~~~~~~~~~~ 219 (385)
+...+++.|.+|+++|++..++.+....+|..+||.+++. ..+.. +|++.|++.++..++..+
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~--l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGR--LVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceee--eehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999543 33333 599999888776665544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=112.43 Aligned_cols=138 Identities=16% Similarity=0.068 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhh
Q 016673 84 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSE 163 (385)
Q Consensus 84 ~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~ 163 (385)
..+.+.+...++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+...+.+.+
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 35666777788888999999999999999999999998888888888878888889999999999999999999999999
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc
Q 016673 164 MAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 223 (385)
Q Consensus 164 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (385)
..|+++|++.+++.+....+|..+||.+++... +..||++.|++.++..++..+..++
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~--~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS--ANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHH--hhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999965443 4568999999988887777665543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=110.01 Aligned_cols=135 Identities=16% Similarity=0.090 Sum_probs=104.0
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHH--HHHHh--hhhHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGA--ILNAC--AVHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~--~~~~~--~~~~~~~~~~r~l~G~~~g~~~ 154 (385)
+.++.+.+...+...++..++.++.|+++||+|||+.+.....+..+.. +.... .++.+.+.+..++.|++.+...
T Consensus 251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999999998876555444433 22222 2467777788899999998999
Q ss_pred hhhhHHhhhcCCCccchhHHHH-HHHHHHHHHHHHHHHHHhccccCCcc-hhHHHhhhHHHHH
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWG-WRLSLGLATVPAT 215 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~-wr~~f~~~~~~~~ 215 (385)
+...+++.|.+|+++|+++.++ .+....+|..++|.+++.... +.| |++.++......+
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~--~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA--MTGDWYAIGYYLAALAL 391 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH--HcCcchhHHHHHHHHHH
Confidence 9999999999999999999998 456667888899998654443 334 8777666554433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.4e-11 Score=106.95 Aligned_cols=140 Identities=14% Similarity=0.067 Sum_probs=101.1
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHH--H------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRAS--I------MVGSVSFFIGAILNACAVHISMLLLGRIFLGMGI 150 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~--~------~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~ 150 (385)
+.++.+.+++.+...++..++.++.|+++||+|||+. . ..+.++..+........++.+.......+.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (399)
T TIGR00893 247 GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGL 326 (399)
T ss_pred cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhch
Confidence 4678889999999999999999999999999999961 1 1111111222222222334444444445555544
Q ss_pred hhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcc-hhHHHhhhHHHHHHHHHhh
Q 016673 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG-WRLSLGLATVPATLMFVGG 221 (385)
Q Consensus 151 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~~ 221 (385)
+ ..+...+++.|..|+++|+++.++.+....+|..++|.+.+.. .+..+ |+..+.+.++..++..+..
T Consensus 327 ~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l--~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 327 G-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAI--AATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred h-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhh--ccCCCchhHHHHHHHHHHHHHHHHH
Confidence 4 7889999999999999999999999999999999999995443 44456 9999888777766655443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-11 Score=108.64 Aligned_cols=258 Identities=14% Similarity=0.151 Sum_probs=166.5
Q ss_pred HHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--hhhhhhhhhHHhhhcCCCc
Q 016673 91 SLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMG--IGFGNQAVPLYLSEMAPAK 168 (385)
Q Consensus 91 ~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~--~g~~~~~~~~~i~~~~~~~ 168 (385)
...+...+.++..|.++||+|||..+....+...+..+...+.. +|.++ +.|+. .+.......++++|...++
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 34667788999999999999999999999999999888888766 33333 44443 3445667888999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCHHHHHHHHHHH
Q 016673 169 IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKLDEARKVLEKV 247 (385)
Q Consensus 169 ~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~ 247 (385)
+|....++.+..+..+..++|.++...... .|.-.+|.+..+..++..+.. .++||+-.. +++.+ + .....
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~--~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~-~--~~~~~ 216 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKF--LGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSD-A--TLREL 216 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccc-c--ccccc
Confidence 999999999999999999999996655543 467788888888888776665 557887421 11110 0 00000
Q ss_pred hCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHH
Q 016673 248 RGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYS 326 (385)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~ 326 (385)
.... ....+..+.++...+....+..+..+. ...+..........-..+.+++. ++++..+.+.+
T Consensus 217 ~~~~-------------~~~~~~~~~~~~~~~~~~~r~~l~l~l-~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~ 282 (463)
T KOG2816|consen 217 TPGS-------------LDSSHVADAFQSLTKVGPDRLLLLLLL-VAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDL 282 (463)
T ss_pred CCCc-------------ccchhhhhhhhhhcccCCCccchHHHH-HHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHH
Confidence 0000 000000111222222122222222111 11111111111111022344444 89999999999
Q ss_pred HHHHHHHHHHHHHHHH-HhhccccchhHHHHhhHHHHHHHHHHHHHhhhc
Q 016673 327 SVITGIALCIAALISM-AFVDKFGRRAFFLEAGTEMIIYMVTTLHSNMIQ 375 (385)
Q Consensus 327 ~~~~~~~~~~~~~~~g-~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 375 (385)
.+..+....++..+.. .+...++.|+.+..|...-.+....+++....+
T Consensus 283 ~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w 332 (463)
T KOG2816|consen 283 LSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETW 332 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccch
Confidence 9999999999988887 677778888888888888888888888765443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-10 Score=107.10 Aligned_cols=149 Identities=18% Similarity=0.136 Sum_probs=108.3
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--hH-H-HHHHHHHHHHhhhhh-hh
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HI-S-MLLLGRIFLGMGIGF-GN 154 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~--~~-~-~~~~~r~l~G~~~g~-~~ 154 (385)
.+.....+......+...++.++.|+++||+|||+.++.+.++.+++.++.+... +. + ....+.++.+.+.+. ..
T Consensus 303 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (479)
T PRK10077 303 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWG 382 (479)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcccc
Confidence 5555666777777888899999999999999999999999999988887765432 21 1 223334444444443 23
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhc----cccCCcchhHHHhhhHHHHHHHHHhhc-ccccch
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGT----EKIHPWGWRLSLGLATVPATLMFVGGL-FLPETP 228 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~----~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~~ 228 (385)
+....++.|.+|+++|++++++......+|..+++.+.... ...++.+|++.|++.++.+++..+..+ +.||++
T Consensus 383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred chhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 66789999999999999999999999999998886553222 223456888888887777666655554 467653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-10 Score=104.79 Aligned_cols=149 Identities=10% Similarity=0.096 Sum_probs=129.1
Q ss_pred ccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcch--HHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHH
Q 016673 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRR--ASIMVGSVSFFIGAILNAC--------AVHISMLLLGRIFLG 147 (385)
Q Consensus 78 ~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr--~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~r~l~G 147 (385)
++++..+...+.-+..+...+|++++|++.||+|.| +++++++++..+..+...+ .++.+.+.+.-++.|
T Consensus 312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G 391 (477)
T PF11700_consen 312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG 391 (477)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999 8999988888766666555 678889999999999
Q ss_pred hhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccc
Q 016673 148 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPET 227 (385)
Q Consensus 148 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (385)
+..|..++...++.+|..|+++.+..+|++....-....+||.+-+......+ +-|+.+....++.++.+++.++++++
T Consensus 392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHHhhccch
Confidence 99999999999999999999999999999999999999999999655554443 47888887777777777777766553
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-10 Score=104.71 Aligned_cols=147 Identities=13% Similarity=0.104 Sum_probs=111.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC-AVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++.++... .++...+ .-++.|++.+...+..
T Consensus 236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~ 313 (393)
T PRK09705 236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLC 313 (393)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHH
Confidence 468888999999999999999999999999999999999988887777665543 3332222 2346688888888877
Q ss_pred hHHhhhcCC-CccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccch
Q 016673 158 PLYLSEMAP-AKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETP 228 (385)
Q Consensus 158 ~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~ 228 (385)
.....+..+ +++|++..++.+....++..++|.+.+......+ +|...|.+.+..+++..+.. .+.||++
T Consensus 314 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 314 LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG-NYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777777775 5789999999999999999999999665554332 47787877776666655544 4566664
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.4e-11 Score=109.85 Aligned_cols=148 Identities=15% Similarity=0.092 Sum_probs=110.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh-----hh------hHHHHHHHHHHHH
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC-----AV------HISMLLLGRIFLG 147 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~-----~~------~~~~~~~~r~l~G 147 (385)
+.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++.++ .+ +...+....++.+
T Consensus 315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (481)
T TIGR00879 315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA 394 (481)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence 356777888999999999999999999999999999999998888887777662 11 2223333333333
Q ss_pred hhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-ccccc
Q 016673 148 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPE 226 (385)
Q Consensus 148 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 226 (385)
.......+....++.|.+|+++|++++++.+....+|..++|.+.+... ++.+|++.|++.++++++..+.. ++.||
T Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~i~~~~~~~~ 472 (481)
T TIGR00879 395 FFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML--ESIGVGGVFIFFGGLNVLGLIFVYFFLPE 472 (481)
T ss_pred HHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCccceehhHHHHHHHHHHHHheeccc
Confidence 3233344666777899999999999999999999999999998854333 34579999988888877766655 44666
Q ss_pred ch
Q 016673 227 TP 228 (385)
Q Consensus 227 ~~ 228 (385)
++
T Consensus 473 ~~ 474 (481)
T TIGR00879 473 TK 474 (481)
T ss_pred CC
Confidence 53
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-11 Score=115.99 Aligned_cols=133 Identities=14% Similarity=0.010 Sum_probs=103.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA--VHISMLLLGRIFLGMGIGFGNQA 156 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~ 156 (385)
+.+..+.+++.+...++..++.++.|+++||+|||++++.+..+..++.+..... .+.+.+.+..++.+.......+.
T Consensus 307 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (496)
T PRK03893 307 GYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGL 386 (496)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchh
Confidence 5788999999999999999999999999999999999988877776665544332 34444545555555444445567
Q ss_pred hhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHH
Q 016673 157 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVP 213 (385)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~ 213 (385)
.+.++.|.+|+++|++++++.+....+|..+||.+++... +..||+..+...+..
T Consensus 387 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~--~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 387 LPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIA--QRLDLGTALASLSFS 441 (496)
T ss_pred hHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHh--ccCChHHHHHHHHHH
Confidence 7788999999999999999999999999999999965444 456788777654443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.6e-10 Score=102.84 Aligned_cols=137 Identities=12% Similarity=0.045 Sum_probs=112.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++.+.|.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.+..+..++.+.+++..++.|++.+...+...
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 315 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHH-HHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQ-LTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV 219 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 219 (385)
.++.+. +++++++..+... ...++|..+||.+++... +..|+ ..++..+...++.++
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~--~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY--QHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccH-HHHHHHHHHHHHHHH
Confidence 998887 5666788888876 556778889999965554 34456 455555555554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=105.59 Aligned_cols=129 Identities=17% Similarity=0.099 Sum_probs=104.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAI-LNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++..+..+ .....++.+.+.+..++.|+..+...+..
T Consensus 270 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (405)
T TIGR00891 270 GLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGIL 349 (405)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhH
Confidence 46888999999999999999999999999999999999888776543333 33345566777777788888777778888
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcc-hhHHHhh
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG-WRLSLGL 209 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-wr~~f~~ 209 (385)
..++.|.+|+++|++++|+.+....+|..++|++.+.+.. ..| |+..+..
T Consensus 350 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~--~~g~~~~~~~~ 400 (405)
T TIGR00891 350 PKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ--RLDEYGTALAS 400 (405)
T ss_pred HHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH--hccccchhHHh
Confidence 8999999999999999999999999999999999655443 345 6665544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.3e-10 Score=101.53 Aligned_cols=142 Identities=15% Similarity=0.108 Sum_probs=106.9
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHH-HHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIM-VGSVSFFIGAILNAC-----AVHISMLLLGRIFLGMGIGF 152 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~-~~~~~~~i~~~~~~~-----~~~~~~~~~~r~l~G~~~g~ 152 (385)
+.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+...++.+.... .++.+..+++.++.|++.+.
T Consensus 253 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 332 (402)
T TIGR00897 253 GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAG 332 (402)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 467888889889999999999999999999999988764 333333443333322 24667777888899988877
Q ss_pred hhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccc
Q 016673 153 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 224 (385)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (385)
..+ ....+.|.. +++|+++.|+.+....+|..++|.+++.. .+..||+..+++.++..++..+...++
T Consensus 333 ~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l--~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 333 YVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLF--IGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 654 445667765 46899999999999999999999996544 345689999998888777766655443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-10 Score=98.60 Aligned_cols=179 Identities=15% Similarity=0.094 Sum_probs=145.7
Q ss_pred HHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 016673 27 LIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYV 106 (385)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l 106 (385)
-...++++-..+.+|.+... .+...|. .+.+|++..+...+.....+..+++++++|++
T Consensus 253 ~i~~FLiA~~~~~DGv~til--------~~~~~fg-------------~~~~gls~~~lll~g~~~~vvA~lg~ii~g~L 311 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTIL--------AMGGVFG-------------AADLGLSSTELLLIGIALSVVAALGAIIAGFL 311 (438)
T ss_pred chHHHHHHHHHHHhhHHHHH--------HHHHHHH-------------HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555656566667666543 2233332 22347899999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHH
Q 016673 107 TRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGIL 186 (385)
Q Consensus 107 ~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 186 (385)
.||+|.|+++..++++..+.++..-+...-..+.++-.+.|.+.|..+....++..+..|+++-++.+|+++...-.++.
T Consensus 312 d~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~ 391 (438)
T COG2270 312 DERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASF 391 (438)
T ss_pred HHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHH
Confidence 99999999999999999999998888887888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccc
Q 016673 187 VANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPET 227 (385)
Q Consensus 187 i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (385)
+||.+-+......+ +-|.-+....++..+.++..+++|+.
T Consensus 392 ~gp~lv~v~t~iTg-~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 392 LGPFLVAVITQITG-SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHHHHhc-chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 99999665555554 46777776666666666766777654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-10 Score=101.89 Aligned_cols=126 Identities=13% Similarity=0.048 Sum_probs=91.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFGNQA 156 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~ 156 (385)
+.++.+.+...+...++..++.++.|++.||+|||+.+..+.++..++.+.....+ +...+.+..+..+.+..+..+.
T Consensus 262 g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (426)
T PRK12307 262 GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGL 341 (426)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHH
Confidence 35778888888999999999999999999999999999988877776655544332 2222222222222222233455
Q ss_pred hhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHH
Q 016673 157 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLS 206 (385)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~ 206 (385)
.+.++.|.+|+++|++++|+......+|..++|.+.+... +..++...
T Consensus 342 ~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~--~~~g~~~~ 389 (426)
T PRK12307 342 VPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG--ITMGLGAA 389 (426)
T ss_pred HHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH--HcccHHHH
Confidence 6678899999999999999999999999999999965443 34455443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.8e-10 Score=105.05 Aligned_cols=117 Identities=11% Similarity=0.047 Sum_probs=99.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA---VHISMLLLGRIFLGMGIGFGNQ 155 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~ 155 (385)
+.++.+.++......++..++.++.|++.||+|||+++..+..+..++..+..+. ++.+.+.+..++.|++.+...+
T Consensus 293 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (471)
T PRK10504 293 GFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFS 372 (471)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999888888889999999999999999999999988888877766553 3444455667888898888888
Q ss_pred hhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 016673 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGT 195 (385)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 195 (385)
....++.+..|+++|+.+.++.+....+|..+|+.+++..
T Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998886543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-09 Score=103.07 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=94.9
Q ss_pred HHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHhhhhhhhhhhhHHhhhcC
Q 016673 90 SSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVH----ISMLLLGRIFLGMGIGFGNQAVPLYLSEMA 165 (385)
Q Consensus 90 s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~ 165 (385)
....++..++.++.++++||+|||+.++++..+.+++..+.++..+ ...+...-+...++..+..+....+..|.+
T Consensus 342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 3445566778899999999999999999888887777666554321 111111111122222233456677789999
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhccccC--------CcchhHHHhhhHHHHHHHHHhhcccccch
Q 016673 166 PAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH--------PWGWRLSLGLATVPATLMFVGGLFLPETP 228 (385)
Q Consensus 166 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--------~~~wr~~f~~~~~~~~~~~~~~~~~~e~~ 228 (385)
|.+.|+++.++.+....+|..++|.+.+.....+ +.++...|++.++..++..+..+++||++
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence 9999999999999999999999998854443321 13455677777777666655566779874
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=100.47 Aligned_cols=139 Identities=10% Similarity=0.139 Sum_probs=116.1
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhH
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPL 159 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 159 (385)
.+..+.+...+...+...++.+..|++.||+|||+.+.++.++.+++......++|.+.+++.++++|++..........
T Consensus 251 ~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 330 (396)
T TIGR00882 251 QGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFK 330 (396)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888999999999999999999999999999999999999988888788889999999999999988777677777
Q ss_pred HhhhcCCCccchhHHHH-HHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHh
Q 016673 160 YLSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 220 (385)
Q Consensus 160 ~i~~~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (385)
++.+..+++.++...+. .+....+|..+++.+++.... ..||+..|.+.++..++..+.
T Consensus 331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~--~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD--SIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH--hcccHHHHHHHHHHHHHHHHH
Confidence 88888888888887766 678889999999999555443 458999999888777665443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.1e-10 Score=104.14 Aligned_cols=135 Identities=20% Similarity=0.113 Sum_probs=109.3
Q ss_pred HHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHhhhhhhhhhhhHHhhhcCCC
Q 016673 90 SSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHI--SMLLLGRIFLGMGIGFGNQAVPLYLSEMAPA 167 (385)
Q Consensus 90 s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 167 (385)
....+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+...+....+..|.+|+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 441 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT 441 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 34556677888999999999999999999999999988887776544 4555566777777778888889999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccch
Q 016673 168 KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 228 (385)
Q Consensus 168 ~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~ 228 (385)
+.|+.++++.+....+|.+++|.+.+ . ...++...+.+.+...++..+..+++||+.
T Consensus 442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 442 VVRNLGVGVCSTMARVGSIISPFLVY-L---GEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHhhhHhHHHHHHHHHHHHHhHHHH-H---HHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999865 2 223566777777777777767677788864
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-09 Score=89.49 Aligned_cols=145 Identities=19% Similarity=0.135 Sum_probs=112.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-------VHISMLLLGRIFLGMGIG 151 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~r~l~G~~~g 151 (385)
|.|.+|...+.+.-.+|..+ .++.|.+.|++|+|.++.+|.+...+|......+ .++|.+.+..++.|.+.+
T Consensus 33 ~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~ 111 (250)
T PF06813_consen 33 GYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSC 111 (250)
T ss_pred CCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHH
Confidence 68999999999999999987 5889999999999999999999999999877653 367888888888888877
Q ss_pred hhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccc
Q 016673 152 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPET 227 (385)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (385)
...++......+.+| ++||++.++.-...+++..+-..+.......+ .-+..+.+...+.++.++..+++++.
T Consensus 112 ~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~--~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 112 WFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD--PSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred HhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHHHhhheecc
Confidence 777777777778887 57999999999999999887776643333332 34445555555555555555555443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=101.88 Aligned_cols=147 Identities=12% Similarity=0.073 Sum_probs=111.8
Q ss_pred cCCchHHHHHHH-HHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTS-SLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILN---ACA-VHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s-~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~r~l~G~~~g~~ 153 (385)
|.+..+.++... ...++..++.++.|+++||+|+|+.+.++.++.+++.+.. +.. ++.+.+.+.-+++.++.|..
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG 333 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 578999999874 6668999999999999999999998877666555544332 232 35555555666766666666
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccc
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPET 227 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 227 (385)
.+...++..+..+++.+++..++.+....+|..+++++.+... +..||+..|.+.++.+++.++...+++++
T Consensus 334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~--~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFV--EAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6777888899999999999999999999999888777754443 34589999998888888877666555543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=101.83 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=123.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++...|++.+...+|..++.++.+++.+|+++++.+..+.++.+++.+..+++++.+..++.-++.|++.....+...
T Consensus 250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~ 329 (524)
T PF05977_consen 250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN 329 (524)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHh
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 220 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (385)
+.+.+..|++.||++++++.+....+..+|..+.+... +..|-+..+.+.++..++..++
T Consensus 330 t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la--~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 330 TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA--DHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999955444 4457788887766654444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-09 Score=100.57 Aligned_cols=143 Identities=18% Similarity=0.124 Sum_probs=96.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh--cchHHH-HHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR--GRRASI-MVGSVSFFIGAILNAC--AVHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~--Grr~~~-~~~~~~~~i~~~~~~~--~~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.+..+.++....+.++..++.++.|+++||+ |||+.. +....+..++.+.... ..+.+...++.++.|.+....
T Consensus 285 g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 364 (452)
T PRK11273 285 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGP 364 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhH
Confidence 46778888888899999999999999999999 555433 2222333333332222 234555555555666544333
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHHHH-HHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGIL-VANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 223 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (385)
......+..|.+|+++|+++.|+.+....+|.. ++|.+.+.. .++.||+..|.+.++.+++.++....
T Consensus 365 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l--~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 365 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT--VDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHH--HHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 333445678999999999999999888778765 478774433 34457999998888777776555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-09 Score=93.88 Aligned_cols=141 Identities=11% Similarity=0.129 Sum_probs=115.1
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-VHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+++.+.++++.-.+.++..+|+.+.|+++|| +.|+.+.....+..+..+...+. ++.+..++.-++.|++.+......
T Consensus 243 g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~ 321 (394)
T COG2814 243 GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGL 321 (394)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHH
Confidence 5799999999999999999999999999999 99999999988888777766654 555666666777788776666666
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 223 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (385)
...+++ ..++.+..+.++....+++|..+|..+++... ++.|++...++.++..++..+..+.
T Consensus 322 ~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~--~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 322 QTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVL--DALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhchHHHHHHHHHHHHHHHHHHHH
Confidence 666666 34678899999999999999999999965544 4479999999999988887766544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=99.98 Aligned_cols=115 Identities=12% Similarity=0.171 Sum_probs=96.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.+..+.++..+...++..++.++.|+++||+|||+.+.........+.++....++.+...+..++.|++.+...+...
T Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 360 (398)
T TIGR00895 281 GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLY 360 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999555444444333333333356777788889999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY 193 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 193 (385)
+++.|.+|+++|+++.++......+|..++|.+++
T Consensus 361 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G 395 (398)
T TIGR00895 361 ALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAG 395 (398)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999854
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=97.40 Aligned_cols=145 Identities=13% Similarity=0.152 Sum_probs=121.5
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHH
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLY 160 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 160 (385)
++...|.+.+...+.-++.-.+..++.+|+|.|+.++++..+.++=.+.+++++|.+.+.+.+.+.|+-.+........|
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY 336 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccchhHHHH-HHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhc-ccccc
Q 016673 161 LSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL-FLPET 227 (385)
Q Consensus 161 i~~~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~ 227 (385)
+++.+|+|-.++...+ .+...++|..+.+.++ ....++.|.+..|++.+.+.+...+... .++++
T Consensus 337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~--G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLA--GYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhH--HhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 9999999887777777 4788889999888884 4455667899999888887776655554 45443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-09 Score=96.04 Aligned_cols=117 Identities=12% Similarity=0.053 Sum_probs=106.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVH-ISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+.++.+.++..+...++..++.++.+++.||+|||+.+..+..+.+++.+...+.++ .+.+.+..++.|++.+...+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (365)
T TIGR00900 243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQ 322 (365)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999999999999988888888888877774 8888899999999999999999
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGT 195 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 195 (385)
.+++.|..|+++|+++.++.+....+|..++|.+++..
T Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 323 GTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.7e-09 Score=97.18 Aligned_cols=119 Identities=18% Similarity=0.083 Sum_probs=85.4
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHH-H---HhhhhHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAIL-N---ACAVHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~-~---~~~~~~~~~~~~r~l~G~~~g~~~ 154 (385)
+.+..+.++....+.++..++.++.|+++||+|||+.++.+..+..+.... . ...+++....+..++.|++.+...
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 349 (434)
T PRK15075 270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN 349 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 467778888888899999999999999999999999988765544332221 1 112344444455666677777777
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHH-HHHHHHHHHHHHHHhccc
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQL-TTCLGILVANLINYGTEK 197 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~i~~~~~~~~~~ 197 (385)
+....++.|.+|+++|+...++... +..++..++|.+.+....
T Consensus 350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 7777889999999999999998644 444456678887544433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.6e-10 Score=103.92 Aligned_cols=143 Identities=11% Similarity=0.054 Sum_probs=102.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcch-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRR-------ASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIG 151 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g 151 (385)
+.+..+.+.+.+.+.++..++.++.|+++||+||| ....+...+.+++.++....++.+...+.-++.+++.+
T Consensus 284 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (476)
T PLN00028 284 GLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQ 363 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999999875 23333333344444445556666666666667777666
Q ss_pred hhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccc
Q 016673 152 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLP 225 (385)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 225 (385)
.......+++.+.. +++|+...++...+..+|..++|.+. . .....+|+..|++.+++.++..+..++++
T Consensus 364 ~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~--~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 364 AACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLF--F-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHH--H-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 66666666667765 46899999999888888888888762 2 11224699999988877777766665544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-09 Score=97.20 Aligned_cols=116 Identities=18% Similarity=0.246 Sum_probs=98.2
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhhhhhhhhhhH
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-VHISMLLLGRIFLGMGIGFGNQAVPL 159 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~ 159 (385)
++.+.+++.+...++..++.+++++++||+|+|+++..+..+.+++.+...+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999998888887777665 46677778889999999999999999
Q ss_pred HhhhcCC-------CccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016673 160 YLSEMAP-------AKIRGAVNQLFQLTTCLGILVANLINYGTE 196 (385)
Q Consensus 160 ~i~~~~~-------~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 196 (385)
+++|..+ ++++|.+.++.+....+|..+++.+.+...
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 456799999999999999999998865443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=99.10 Aligned_cols=141 Identities=14% Similarity=0.111 Sum_probs=95.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh--cch-HHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR--GRR-ASIMV---GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGF 152 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~--Grr-~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~ 152 (385)
+.+..+.+...+.+.++..++.++.|+++||+ ++| ..... +..+..++..... ..+.....+..+..|++...
T Consensus 275 g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~ 353 (434)
T PRK11663 275 GVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFG 353 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhh
Confidence 57888899999999999999999999999999 333 32222 1121111111122 23333333444445543332
Q ss_pred hhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhc
Q 016673 153 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL 222 (385)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (385)
........+.|.+|+++|+++.|+.+....+|..++|.+.+.. .++.||+..|++.++..++..+...
T Consensus 354 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l--~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 354 PQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKV--LEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHH--HHhcccHHHHHHHHHHHHHHHHHHH
Confidence 2233445678999999999999999999999999999985444 4556899999888887777655443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-09 Score=96.77 Aligned_cols=140 Identities=19% Similarity=0.080 Sum_probs=105.4
Q ss_pred cCCchHHHHHHHHHHH-HHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHhhhh
Q 016673 79 KYDNQVLTLFTSSLYF-AGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC------AVHISMLLLGRIFLGMGIG 151 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l-~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~r~l~G~~~g 151 (385)
+.++++.+++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.....+.+++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 4789999999887764 66778899999999999999998877666333332221 1233444555666677778
Q ss_pred hhhhhhhHHhhhcCCC-ccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHh
Q 016673 152 FGNQAVPLYLSEMAPA-KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 220 (385)
Q Consensus 152 ~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (385)
...+...+...+..++ +++++.++..+...++|..++|.+++... +..||+..|.+.++..++..+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~--~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT--DRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHccHHHHHHHHHHHHHHHHH
Confidence 7878888887777766 88999999999999999999999966554 3457889998877766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-09 Score=96.13 Aligned_cols=146 Identities=13% Similarity=-0.024 Sum_probs=91.0
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH--h--hhhHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA--C--AVHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~--~--~~~~~~~~~~r~l~G~~~g~~~ 154 (385)
+.+..+.+...+...++..+++++.|+++||+|||+.+.++..+..+...... . .++....+..-.+.+...+...
T Consensus 275 g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
T PRK10406 275 GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYT 354 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888889999999999999999988776665443332221 1 1233322222222333334444
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHH-HHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccccc
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 226 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (385)
+....++.|++|++.|+.+.|+.+....+ .....|.+..... ....|...++..++..++..+..+++++
T Consensus 355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~--~~g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 355 SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK--SIGMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 55677889999999999999998765443 2334666544222 1113555666555555555555454433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-08 Score=90.94 Aligned_cols=147 Identities=14% Similarity=0.180 Sum_probs=109.1
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh---hHH------HHHHHHHHHHhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV---HIS------MLLLGRIFLGMG 149 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~---~~~------~~~~~r~l~G~~ 149 (385)
+++..+..+.+........+..+++..+.||+|||+.++.+..+..+..+++.... +.. ..+++.++..++
T Consensus 301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~ 380 (485)
T KOG0569|consen 301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIIS 380 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 47888999999999999999999999999999999999999999999888776532 211 123444444443
Q ss_pred hhh-hhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccc
Q 016673 150 IGF-GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPET 227 (385)
Q Consensus 150 ~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 227 (385)
.+. .-|...-+.+|.+|++.|+.++++.....-+...+-... .....+..|= +.|++..+++++..+.. ..+||+
T Consensus 381 f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~--fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 381 FAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA--FPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred hhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence 333 346778889999999999999999988888877766555 3332222233 66667777777765555 568998
Q ss_pred h
Q 016673 228 P 228 (385)
Q Consensus 228 ~ 228 (385)
+
T Consensus 458 k 458 (485)
T KOG0569|consen 458 K 458 (485)
T ss_pred C
Confidence 4
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-09 Score=108.95 Aligned_cols=136 Identities=13% Similarity=0.063 Sum_probs=115.2
Q ss_pred cCCch-HHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQ-VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~-~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+.+.. +.+++.+...++..++.++.|+++||+++|+.+.++.++.+++.++..+..+.+.++++.++.|++.+...+..
T Consensus 264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 343 (1146)
T PRK08633 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPL 343 (1146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 46777 89999999999999999999999999999999999999998888888888899999999999999999999999
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHH
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPAT 215 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~ 215 (385)
.+++.+..|+++|++++++.+....+|..+++.++..... ...++...+++.+.+.+
T Consensus 344 ~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 344 NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888777654432 22356666655554433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.4e-09 Score=94.17 Aligned_cols=104 Identities=12% Similarity=0.138 Sum_probs=89.0
Q ss_pred cCCchHHHHHHHHHH-HHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHH
Q 016673 79 KYDNQVLTLFTSSLY-FAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-----------VHISMLLLGRIFL 146 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~-l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~r~l~ 146 (385)
+.++++.+.+.+... ++..++.+++|++.||+|||+.+..+.++.+++..+..+. ++.+.+..+.++.
T Consensus 240 g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (356)
T TIGR00901 240 GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLE 319 (356)
T ss_pred CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHH
Confidence 468888898887665 6778999999999999999999999888888777655543 4567788889999
Q ss_pred HhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHH
Q 016673 147 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTC 182 (385)
Q Consensus 147 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 182 (385)
+++.+...+...+++.|.+|+++|++.+++.+...+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 320 AVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 999999999999999999999999999999887654
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-08 Score=88.33 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=100.1
Q ss_pred ccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 78 ~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+++++++.+...+.+..+..++.++.+++.||+|+|+.+.++..+..++.++....++... ..+-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999998888888887766665554333 345568899999999999
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhH
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLAT 211 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~ 211 (385)
.+...+..|++ .+.+.++. ....+|..+.|++.+.. .+..|.+..|++..
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~l--ad~~g~~~a~~v~~ 301 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSL--ADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHH--HHhccchHHHHHHH
Confidence 99998888754 45666665 55668889999874333 33446777776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-08 Score=90.84 Aligned_cols=135 Identities=13% Similarity=0.043 Sum_probs=104.4
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVS-FFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+.++.+.+.....+.++..++.++.+++.||.++ +.++.+..+ .....++....++.+.+.+..++.|++.+...+..
T Consensus 248 g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~ 326 (394)
T PRK10213 248 GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGW 326 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 4688889999999999999999999999999654 444444444 34444444566778888888999999999999999
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHH
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLM 217 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 217 (385)
.+++.+..| ++++++.+.......+|..+|+.+++... +..|++..+...+...++.
T Consensus 327 ~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~--~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 327 STWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYAL--DNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccChhhHHHHHHHHHHHH
Confidence 989998887 55678888888888999999999965554 4457888888776655444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-09 Score=98.13 Aligned_cols=147 Identities=17% Similarity=0.098 Sum_probs=94.9
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHH---HHHHHHHh--hhhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFF---IGAILNAC--AVHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~---i~~~~~~~--~~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.++.+.++..+.+.++..++.++.|+++||+|+|+....+..+.. ++.+.... ..+.+......++.|++....
T Consensus 283 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 362 (438)
T TIGR00712 283 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGP 362 (438)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccH
Confidence 4678888999999999999999999999999975432223322221 12222122 123344444445555543222
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHH-HHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccc
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLG-ILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPET 227 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 227 (385)
.........|.+|+++|+.+.|+.+....+| ..++|.+.+... ++.||...+.+.....++..+.. ..+||+
T Consensus 363 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 363 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV--DFFGWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHH--HhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2222346789999999999999998877776 568888844433 34579999887777666655544 446664
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.1e-09 Score=95.66 Aligned_cols=132 Identities=14% Similarity=0.056 Sum_probs=88.0
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRAS-IMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
.+..+.+...+...++..++.++.|+++||++||+. ......+..++..+....++.....++-.+.+++.....+...
T Consensus 276 ~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 355 (412)
T TIGR02332 276 SSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFW 355 (412)
T ss_pred CcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHH
Confidence 466788999999999999999999999999997775 3444444444333222222222222222223333333333444
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCc-chhHHHhhhHHH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPW-GWRLSLGLATVP 213 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~-~wr~~f~~~~~~ 213 (385)
....|.+|+++|+++.|+.+....+|..++|.+. ....+.. +|++.+++.++.
T Consensus 356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~--g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLI--GILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhc--ccccccCCCCchhHHHHHHH
Confidence 5556788999999999999999999999999984 3333433 588888766554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-08 Score=94.34 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=102.4
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC----AVHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~ 154 (385)
+.++.+.++......++..++.++.|++.||+|||+.+..+..+.+++.....+ ..+.+.+....++.|++.+...
T Consensus 287 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 366 (485)
T TIGR00711 287 GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFF 366 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999999999999999988888887763 2356677777899999999888
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGT 195 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 195 (385)
+.......+..|+++|+.+.++.+....+|..+|+.+.+..
T Consensus 367 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 367 MPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999885433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-08 Score=92.37 Aligned_cols=136 Identities=18% Similarity=0.119 Sum_probs=104.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-----VHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.+..... ++.+.+++..++.|++.+..
T Consensus 247 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 326 (406)
T PRK15402 247 QLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLA 326 (406)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888899999999999999999999999988887777766553 35667778889999999888
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHH
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLM 217 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 217 (385)
.+......... ++++|+++.+..+....+|..+|+.+++... +..++....+...+.+++.
T Consensus 327 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~--~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 327 NAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAY--LGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred hhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcc--cCCchHHHHHHHHHHHHHH
Confidence 77666655444 4589999999999999999999999954443 3445555444444444443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-08 Score=92.47 Aligned_cols=139 Identities=10% Similarity=0.041 Sum_probs=106.6
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhh-hhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhH
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTR-SRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPL 159 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d-~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 159 (385)
++.+.+++.+...++...+..+.+++.| |++.|+.+..+.++.+++.+..+.+++++.+.+..++.|++.+...|...+
T Consensus 241 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~ 320 (400)
T PRK11646 241 SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARET 320 (400)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHH
Confidence 5667888888877776666666666665 567677778888888888888888888888888888999998888899999
Q ss_pred HhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCC-cch-hHHHhhhHHHHHHHHH
Q 016673 160 YLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP-WGW-RLSLGLATVPATLMFV 219 (385)
Q Consensus 160 ~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-~~w-r~~f~~~~~~~~~~~~ 219 (385)
++.|..|+++|++++++.+....+|..+||.+++......+ .++ ...++..++.+++..+
T Consensus 321 ~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (400)
T PRK11646 321 LSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLL 382 (400)
T ss_pred HHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999766654321 122 3444444444444433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-08 Score=90.02 Aligned_cols=140 Identities=8% Similarity=-0.004 Sum_probs=102.0
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC-AVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+.++.+.++..+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+...+..++.+++.....+..
T Consensus 231 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 310 (382)
T PRK10091 231 GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPL 310 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 468889999999999999999999999999999999999988888887765543 4555666666777777665555444
Q ss_pred hH-HhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh
Q 016673 158 PL-YLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG 221 (385)
Q Consensus 158 ~~-~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 221 (385)
.. ...+..+++.++.. ..+....+|..+||.+++..... ..+|++.+.+.++.+++.....
T Consensus 311 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 311 QILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTL-GLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHc-ccCcchHHHHHHHHHHHHHHHH
Confidence 43 34444444555544 34667889999999996555432 2479999988877666654443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=91.26 Aligned_cols=118 Identities=14% Similarity=0.030 Sum_probs=93.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh-cchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
+.+..+.+.+.+...++..+++++.|++.||+ +||+.+..+..+.+++.+...+.++..... .-++.|++.+...+..
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~ 306 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLA 306 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHH
Confidence 46888999999999999999999999999999 567777788888888877777655433322 4567899999988887
Q ss_pred hHHhhhcCC-CccchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 016673 158 PLYLSEMAP-AKIRGAVNQLFQLTTCLGILVANLINYGTEK 197 (385)
Q Consensus 158 ~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 197 (385)
.+.+.+..+ +++++...++.+....+|..++|.+.+....
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 307 LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766554 5667888999888888888999988655443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.9e-09 Score=94.55 Aligned_cols=127 Identities=19% Similarity=0.183 Sum_probs=91.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcc-hHHHH-HHH-HHHHHHHHHHHh--hhhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR-RASIM-VGS-VSFFIGAILNAC--AVHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Gr-r~~~~-~~~-~~~~i~~~~~~~--~~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.++.+.++..+...++..++.++.|++.||.++ |+... ... ....++...... ..+.+...+..++.|+.....
T Consensus 248 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 327 (379)
T TIGR00881 248 GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGP 327 (379)
T ss_pred CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Confidence 4688899999999999999999999999998643 33222 222 122222222222 345566667777788766666
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHH
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSL 207 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f 207 (385)
.+....++.|..|+++|+++.++.+....+|..++|.+.+... +..||++.|
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~--~~~g~~~~f 379 (379)
T TIGR00881 328 QMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLA--DGFGWAGAF 379 (379)
T ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHH--HhhcccccC
Confidence 6667788999999999999999999999999999999954443 456787653
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.8e-09 Score=94.40 Aligned_cols=146 Identities=9% Similarity=0.063 Sum_probs=114.5
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-VHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
.+....++..+.+.......+++.|++.||+++|+.+..+..+..++.+...+. ++.+.+.++.++.|+|.+...|...
T Consensus 241 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~ 320 (395)
T PRK10054 241 FAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEY 320 (395)
T ss_pred hHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 356677888888888888888999999999999999999998888888777664 5777778889999999988888888
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccch
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETP 228 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~ 228 (385)
.++.+..|++.|+.+.+..+ ...+|..+||.+++... ++.|.+..|++.+....+..+.. ....|+|
T Consensus 321 ~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 321 MLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVIL--TTLPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred HHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHH--HHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 99999999999999988765 45589999999965544 44577777777666555554443 3355554
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.5e-09 Score=96.27 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=129.1
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhc--chHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG--RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQA 156 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 156 (385)
+.+..+.+.+.++..+...++.++.|+++|+.. ++....++++..+++.+.+.++++++.++..-.+.|++.|.....
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l 408 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSL 408 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999988 566778888888999999999999999999999999999999988
Q ss_pred hhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccc
Q 016673 157 VPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLP 225 (385)
Q Consensus 157 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 225 (385)
...++.|..+.++-..+.|+.....+++.++||++++...... .+|...|+.+++..++....++..|
T Consensus 409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t-g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT-GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc-CCeeeehhhcChHHHHHHHHHHHhH
Confidence 8889999999999999999999999999999999965333332 2499999999988888877766665
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.8e-08 Score=88.43 Aligned_cols=113 Identities=20% Similarity=0.301 Sum_probs=91.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-----VHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.++.+.+++.+...++..++.++.|++.||+|||+.+..+..+..++.++.... ++.+.+....++.|++.+..
T Consensus 238 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (385)
T TIGR00710 238 GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMI 317 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999999999999998888887777666543 23445566678899999999
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHH-HHHHHHHHHH
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTC-LGILVANLIN 192 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~i~~~~~ 192 (385)
.+.......|..| ++|+++.++.+.... .|.+.++.++
T Consensus 318 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 318 SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8988888889876 678999998776654 4666666664
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-08 Score=89.16 Aligned_cols=147 Identities=16% Similarity=0.225 Sum_probs=114.1
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-hhHHHHHH----HHHHHHhhhhhhhh
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-VHISMLLL----GRIFLGMGIGFGNQ 155 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~----~r~l~G~~~g~~~~ 155 (385)
+....+.+.+...++-.+.-...+++..|+|.|+++.++.+..++=..+.+.. ++.+...+ ...++|+..+....
T Consensus 241 ~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~ 320 (400)
T PF03825_consen 241 SGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHA 320 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45566777777778888899999999999999999999999999998888887 55444333 35679999999999
Q ss_pred hhhHHhhhcCCCccchhHHHHHHH-HHHHHHHHHHHHHHhccccCC----cchhHHHhhhHHHHHHHHHhh-cccccc
Q 016673 156 AVPLYLSEMAPAKIRGAVNQLFQL-TTCLGILVANLINYGTEKIHP----WGWRLSLGLATVPATLMFVGG-LFLPET 227 (385)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~i~~~~~~~~~~~~~----~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 227 (385)
+...++.+..|++.|+++.++++. ..++|..+|..+++....... ..|...+.+.+...++..++. .+++|+
T Consensus 321 a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 321 ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999776 468999999999766554321 345556666666655554444 345543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.4e-09 Score=88.17 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=97.4
Q ss_pred HHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHhhhhhhhhhhhHHhhhcCCCc
Q 016673 93 YFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHIS----MLLLGRIFLGMGIGFGNQAVPLYLSEMAPAK 168 (385)
Q Consensus 93 ~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 168 (385)
.+.-..|.++.+++.||+|||+++..+.++++++.+....+.+-. .+..+|++.. +.+.+.+.|..|.+|.+
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis----g~fqvaYvYtPEVyPTa 466 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS----GAFQVAYVYTPEVYPTA 466 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh----chheEEEEecCcccchh
Confidence 455677889999999999999999999999999999877654322 3334565544 44557889999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccch
Q 016673 169 IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETP 228 (385)
Q Consensus 169 ~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~ 228 (385)
.|+...|....+..+|.++.|+++. .... +-..+..+.+..+++..+...++|-.+
T Consensus 467 vRatgvGtcSsmaRIggI~~p~iA~-~~e~---s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 467 VRATGVGTCSSMARIGGIFSPVIAM-RAEL---STSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhcchhhhhhHHhhhhhhhhHHHH-Hhcc---ceeehHHHHHHHHHHHHHHheeeeecc
Confidence 9999999999999999999999962 2211 233455566677777777777777443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.1e-07 Score=86.56 Aligned_cols=143 Identities=15% Similarity=0.221 Sum_probs=112.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAV--------HISMLLLGRIFLGMG 149 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~r~l~G~~ 149 (385)
+.+.+....+...+....-+..+++|+++|+ +||++.++++.++..++.++.+++. .....+++-.+..+|
T Consensus 19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G 98 (654)
T TIGR00926 19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG 98 (654)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence 4677788888888888888899999999996 7999999999999999998887642 123466778888899
Q ss_pred hhhhhhhhhHHhhhcCCCcc---chhHHHHHHHHHHHHHHHHHHHHHhcccc-----CCcchhHHHhhhHHHHHHHHHhh
Q 016673 150 IGFGNQAVPLYLSEMAPAKI---RGAVNQLFQLTTCLGILVANLINYGTEKI-----HPWGWRLSLGLATVPATLMFVGG 221 (385)
Q Consensus 150 ~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~~ 221 (385)
.|+.-+...+...|.+++++ |.....++..+.++|+.+++++....... ...+|...|.+.++..++.++..
T Consensus 99 ~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 99 TGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred ccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997643 66778888889999999888775433311 12469999998888777665543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-08 Score=103.34 Aligned_cols=134 Identities=16% Similarity=0.048 Sum_probs=109.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh--------------------hhHHH
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA--------------------VHISM 138 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~--------------------~~~~~ 138 (385)
+.+..+.+++.+.+.++..++.++.|+++|+.++++.+..+.++.+++.+..++. ++.+.
T Consensus 257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence 4688899999999999999999999999998888777766666666655544443 67788
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHH
Q 016673 139 LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVP 213 (385)
Q Consensus 139 ~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~ 213 (385)
++++.++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++.+.... ...++...+++.+..
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~-~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA-LGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999988655432 223566666554443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-08 Score=91.04 Aligned_cols=140 Identities=14% Similarity=0.082 Sum_probs=97.2
Q ss_pred cCCchHHHHHHHHH-HHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHH----HHHhh
Q 016673 79 KYDNQVLTLFTSSL-YFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILN---ACA-VHISMLLLGRI----FLGMG 149 (385)
Q Consensus 79 ~~~~~~~~~~~s~~-~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~r~----l~G~~ 149 (385)
+.++++.+++.+.. ..+..++.++.|++.||+|||+.+..+..+..+..+.. +.. ++.+.+++.-+ ..|++
T Consensus 241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 320 (402)
T PRK11902 241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMG 320 (402)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 57888999988665 45689999999999999999998887777766655433 343 45565555543 45566
Q ss_pred hhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccc
Q 016673 150 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 224 (385)
Q Consensus 150 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (385)
.+...+....++.+..|.+++ +..+...++|..+++.+++.. .+..||+..|.+.++.+++..+..+..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l--~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 321 TAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYL--VEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHH--HHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777776554 445555566666556664333 345689999999888887776655443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-07 Score=86.74 Aligned_cols=133 Identities=11% Similarity=-0.080 Sum_probs=104.0
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
|.++.+.|++.+...++..+++++.+++.||.++|+++..+. +.++..+..++.++++...+..++.|++.+...+...
T Consensus 237 g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~ 315 (393)
T PRK11195 237 GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMN 315 (393)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 568889999999999999999999999999999999888775 3444455556677788778888899999998888888
Q ss_pred HHhhhcCCCcc-chhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHH
Q 016673 159 LYLSEMAPAKI-RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVP 213 (385)
Q Consensus 159 ~~i~~~~~~~~-r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~ 213 (385)
+.+.|..|+++ +|++.++.+....+|..++..+...... .+..++..+...+.+
T Consensus 316 ~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 370 (393)
T PRK11195 316 ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK-LGVPVVAVIVGFGLL 370 (393)
T ss_pred HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 88888766654 7999999999999999999988654322 223344444444444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.8e-08 Score=89.16 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=93.6
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhhhhh
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
.++...++......++..++.++.+++.||+|+|+++.++.++..++.+...+.+ +.+.+.+..++.|+|.+...+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~ 340 (448)
T PRK09848 261 DTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVM 340 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555677888999999999999999999999998888887776643 67777778889999999999999
Q ss_pred hHHhhhcCCCc-------cchhHHHHHHHHHHHHHHHHHHHHHhc
Q 016673 158 PLYLSEMAPAK-------IRGAVNQLFQLTTCLGILVANLINYGT 195 (385)
Q Consensus 158 ~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~i~~~~~~~~ 195 (385)
.++..|..|.+ ++|...+..+....+|..+|+.+.+..
T Consensus 341 ~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 341 WALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988754 458889999999999999988875443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-08 Score=86.43 Aligned_cols=141 Identities=20% Similarity=0.190 Sum_probs=109.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh--cchHHHHH-HHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR--GRRASIMV-GSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~--Grr~~~~~-~~~~~~i~~~~~~~~~--~~~~~~~~r~l~G~~~g~~ 153 (385)
|.+....++..+.+-.+...|.+++|+++||+ |||....+ .+++..++.+..-.++ |++...++-++.|+..-+-
T Consensus 284 ~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGP 363 (448)
T COG2271 284 GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGP 363 (448)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhH
Confidence 67999999999999999999999999999995 77766544 4444444444444444 5688888899999887766
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHH-HHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG 221 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 221 (385)
+-..-....|..|++--|.+.|+...+..+ |...+... .....+.+||...|++..+.++++.++.
T Consensus 364 qmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~--~g~i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 364 QMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLP--LGYIADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred HHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCc--ceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence 666666788999999999999999998888 77777766 4455555899999988777666665544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-08 Score=90.79 Aligned_cols=145 Identities=18% Similarity=0.205 Sum_probs=107.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh---c--chHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR---G--RRASIMVGSVSFFIGAILNACA----VHISMLLLGRIFLGMG 149 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~---G--rr~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~r~l~G~~ 149 (385)
++++++.....+...+...+ .++.|.++|.+ | ||+-++++.++..++.+..+.. .+.....++-++..+|
T Consensus 21 ~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g 99 (433)
T PF03092_consen 21 GLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFG 99 (433)
T ss_pred CCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 68999998888887776655 67889999986 2 5555566777766666655553 3566677778888999
Q ss_pred hhhhhhhhhHHhhhcCC--CccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccccc
Q 016673 150 IGFGNQAVPLYLSEMAP--AKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 226 (385)
Q Consensus 150 ~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (385)
......++-+++.|... ++.|+...+.......+|.+++..+++... +..++|..|.+.++...+..+..++++|
T Consensus 100 ~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~--~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 100 YAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLL--DSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh--hcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 99999999999999883 344788888888899999999998854443 4457888888887776666555544433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.8e-08 Score=91.45 Aligned_cols=117 Identities=15% Similarity=-0.050 Sum_probs=102.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC---AVHISMLLLGRIFLGMGIGFGNQ 155 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~ 155 (385)
+.++.+.|.....+.++..++.++.|++.||+|+|+.+..+.++..++.+.... .++.+......++.|+|.|...+
T Consensus 291 g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~ 370 (495)
T PRK14995 291 GLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALL 370 (495)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHH
Confidence 568999999999999999999999999999999999999998888887765543 24566667788999999999999
Q ss_pred hhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 016673 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGT 195 (385)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 195 (385)
.....+.+..|+++++.+.++.+....+|..+|+.+.+..
T Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 371 ASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999885443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-08 Score=91.13 Aligned_cols=145 Identities=13% Similarity=0.089 Sum_probs=96.5
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHH--------HHHHHHH--HHHHHHHHh-hhhHHHHHHHHHHHH
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASI--------MVGSVSF--FIGAILNAC-AVHISMLLLGRIFLG 147 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~--------~~~~~~~--~i~~~~~~~-~~~~~~~~~~r~l~G 147 (385)
+.+..+.++..+...++..++.++.|+++||+++|+.. ..+.... .+..+.... ..+.+..+++-.+.+
T Consensus 293 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (465)
T TIGR00894 293 RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLAN 372 (465)
T ss_pred CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 46888999999999999999999999999998755321 1111111 111111122 234444445555555
Q ss_pred hhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCC-cchhHHHhhhHHHHHHHHHhhccc
Q 016673 148 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGLATVPATLMFVGGLFL 224 (385)
Q Consensus 148 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~ 224 (385)
.+.+...+.......|..|+ .+|.+.++.+....+|..++|.+.+.....+. .+|+..|.+.++..++..+...++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 373 AVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 55555555555555677765 89999999999999999999988544433222 348999998888777776655544
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.4e-08 Score=86.88 Aligned_cols=111 Identities=19% Similarity=0.328 Sum_probs=98.3
Q ss_pred cCC-chHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYD-NQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV---HISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~-~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~ 154 (385)
+.+ ..+.+...+...++..++.++.|++.||+|+|+..........++.+...... +....++.-++.|++.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 317 (352)
T PF07690_consen 238 GFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVF 317 (352)
T ss_dssp HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 457 68899999999999999999999999999998888888777777777666543 45777778899999999999
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHH
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVAN 189 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 189 (385)
+....++.|..|+++|+++.++.+....+|..+||
T Consensus 318 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 318 PILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.3e-08 Score=85.46 Aligned_cols=133 Identities=26% Similarity=0.406 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHhhhhhhhhhhhHH
Q 016673 83 QVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVH--ISMLLLGRIFLGMGIGFGNQAVPLY 160 (385)
Q Consensus 83 ~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~r~l~G~~~g~~~~~~~~~ 160 (385)
...++..+.+.++..++.++.|.++||+|||+.+..+.....++.+.+++..+ .+.+++.|+++|++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 47899999999999999999999999999999888888776666777777766 8999999999999999999999999
Q ss_pred hhhcCCC-ccchhHHHHHHH-HHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHH
Q 016673 161 LSEMAPA-KIRGAVNQLFQL-TTCLGILVANLINYGTEKIHPWGWRLSLGLATVPAT 215 (385)
Q Consensus 161 i~~~~~~-~~r~~~~~~~~~-~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~ 215 (385)
+.|+.|+ ++|+...+.... ...+|..+++.++.........+||+.+........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999988 678999998888 588888888866544433234579996666555543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.5e-08 Score=88.66 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhhhhhhH
Q 016673 82 NQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFGNQAVPL 159 (385)
Q Consensus 82 ~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~ 159 (385)
+...+.+..+..++..++.+++++++||+|+|+.+..+..+.+++.++..+.+ |.+.+++.-++.|++.+...+...+
T Consensus 259 ~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a 338 (428)
T PF13347_consen 259 EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWA 338 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccccccc
Confidence 35678888899999999999999999999999999999999999999988876 9999999999999999999999999
Q ss_pred HhhhcCCC-------ccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 016673 160 YLSEMAPA-------KIRGAVNQLFQLTTCLGILVANLINYGT 195 (385)
Q Consensus 160 ~i~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 195 (385)
+++|..+. ++.|...+......-+|..+++.+.+..
T Consensus 339 ~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 339 MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999873 3457888888888888888888775433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-07 Score=86.70 Aligned_cols=134 Identities=9% Similarity=0.004 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHhHhhhh----hhhhhhhcchHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHhhhh
Q 016673 85 LTLFTSSLYFAGLVSTFGA----SYVTRSRGRRASIMVGSVSFFIGAILNACAVH---------ISMLLLGRIFLGMGIG 151 (385)
Q Consensus 85 ~~~~~s~~~l~~~~~~~~~----g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~r~l~G~~~g 151 (385)
.+++.+...+...+..++. +++.||++.++.+.+|.++.+++.+..+...+ .++++...++.|+|..
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4555556665555555555 67777777778899999999999988877655 4688889999999999
Q ss_pred hhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccc----cC----CcchhHHHhhhHHHHHHHH
Q 016673 152 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK----IH----PWGWRLSLGLATVPATLMF 218 (385)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~----~~----~~~wr~~f~~~~~~~~~~~ 218 (385)
...|...+++.+..|++.||+++|.+.....+|..++..+...... .+ ..+.++.|...++.+++..
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a 472 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA 472 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888888888777431110 00 1135677766666555443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-07 Score=77.60 Aligned_cols=144 Identities=11% Similarity=-0.020 Sum_probs=108.0
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGA-ILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
++++...+.+.+....-.++.+++.|.++||+|++...+.+..+..+.. ....+ +.+.-..+..+.|++.+......
T Consensus 296 GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcsl 373 (459)
T KOG4686|consen 296 GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSL 373 (459)
T ss_pred CCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHH
Confidence 6899999999999999999999999999999999988776655544433 33333 44445567788899887776667
Q ss_pred hHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCC-cchhHHHhh-hHHHHHHHHHhhccc
Q 016673 158 PLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGL-ATVPATLMFVGGLFL 224 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-~~wr~~f~~-~~~~~~~~~~~~~~~ 224 (385)
...++...|+++.|++.+..+...++|-.+.|++++.+...++ +.|--.|++ .+.+++....+.+.+
T Consensus 374 WP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 374 WPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred hhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 7788899999999999999999999999999999776665554 445544544 444444444444444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.1e-07 Score=82.08 Aligned_cols=135 Identities=12% Similarity=0.060 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhcc---hHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHH
Q 016673 85 LTLFTSSLYFAGLVSTFGASYVTRSRGR---RASIMV-GSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLY 160 (385)
Q Consensus 85 ~~~~~s~~~l~~~~~~~~~g~l~d~~Gr---r~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 160 (385)
.+...+...+...++ .++++||.+| |+.... ...+.+++....+...+.+..++.-.+.|++.....+...++
T Consensus 228 ~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 304 (368)
T TIGR00903 228 AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDW 304 (368)
T ss_pred HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 455555555555544 4677777654 333332 344444444444555555555555666777777777778899
Q ss_pred hhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccccc
Q 016673 161 LSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPE 226 (385)
Q Consensus 161 i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 226 (385)
..|.+|++.|+++.|+.+....+|...+|++.+... . +-+..|.+.+++.++..+....+++
T Consensus 305 ~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~--~--~~~~~f~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 305 IGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI--S--SAEAYFTFLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh--c--CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999988888854333 1 5666677666666666555444454
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.6e-08 Score=89.69 Aligned_cols=150 Identities=11% Similarity=0.011 Sum_probs=117.8
Q ss_pred cccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHH
Q 016673 77 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC----------AVHISMLLLGRIFL 146 (385)
Q Consensus 77 ~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~r~l~ 146 (385)
..+.++.+.|.......++..++....+++.+|++.|+++.++.++.+++.+.... .++.+......++.
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 34689999999999999999999999999999999999999999999998865431 13444556668899
Q ss_pred HhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCC-----cchhHHHh-hhHHHHHHHHHh
Q 016673 147 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHP-----WGWRLSLG-LATVPATLMFVG 220 (385)
Q Consensus 147 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-----~~wr~~f~-~~~~~~~~~~~~ 220 (385)
+++.+....+...++.+..|+++++...++.....++|..+++.+++.+...-+ ++.++... ++.+..++.+..
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~ 441 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPL 441 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988665543221 33333333 333444444555
Q ss_pred hccccc
Q 016673 221 GLFLPE 226 (385)
Q Consensus 221 ~~~~~e 226 (385)
.+++|+
T Consensus 442 ~~llP~ 447 (468)
T TIGR00788 442 LHLLPR 447 (468)
T ss_pred HHhCCC
Confidence 567785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7e-07 Score=81.11 Aligned_cols=113 Identities=16% Similarity=0.103 Sum_probs=83.4
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH---h-hhhHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---C-AVHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~---~-~~~~~~~~~~r~l~G~~~g~~~ 154 (385)
+.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..+..+... . ..+.+...++-.+.+.+.+...
T Consensus 226 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T PRK11102 226 GVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMIS 305 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 46888999999999999999999999999999999999888876554433322 1 2345555555555555555566
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHH-HHHHHHHHHHHH
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLT-TCLGILVANLIN 192 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~i~~~~~ 192 (385)
.....++.|..| ++|+.+.+..... ..+|..+++.++
T Consensus 306 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 306 SNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677778776 7889999886554 567777887774
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.9e-07 Score=85.32 Aligned_cols=111 Identities=13% Similarity=0.202 Sum_probs=75.1
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++.+.+.+.+...++..++.++.+++.||+|||+.+..+..+..++.+...+.++.+..+..-.+.+.+.+...+.
T Consensus 235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-- 312 (392)
T PRK10473 235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV-- 312 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--
Confidence 467888899999999999999999999999999999999999999888888887766655455444544444443333
Q ss_pred HHhhhcCCCccc-hhHHHHHHHHHHHHHHHHHHH
Q 016673 159 LYLSEMAPAKIR-GAVNQLFQLTTCLGILVANLI 191 (385)
Q Consensus 159 ~~i~~~~~~~~r-~~~~~~~~~~~~~g~~i~~~~ 191 (385)
....+..|.++| +.+.+.......+|..+++.+
T Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l 346 (392)
T PRK10473 313 AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWL 346 (392)
T ss_pred HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 233444454444 344444443334444444433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-07 Score=85.08 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhHhhhhhh----hhhh-hcchHHH--HHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHh
Q 016673 85 LTLFTSSLYFAGLVSTFGASY----VTRS-RGRRASI--MVGSVSFFIGAILNAC---------AVHISMLLLGRIFLGM 148 (385)
Q Consensus 85 ~~~~~s~~~l~~~~~~~~~g~----l~d~-~Grr~~~--~~~~~~~~i~~~~~~~---------~~~~~~~~~~r~l~G~ 148 (385)
.+++.+...+...+.+++..+ +.|| .+++... .+|.++.+++.+..++ ..|+++++...++.|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 577888888888888777554 4444 2333333 7788888888877764 4689999999999999
Q ss_pred hhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh
Q 016673 149 GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG 221 (385)
Q Consensus 149 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 221 (385)
|.....|...+++.+..|++.|++++|++.....+|..+++.+..... ...+|...|...++..++..+..
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGA--VPQGVTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998854433 23468777777666666554444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-06 Score=78.19 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=93.0
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCc
Q 016673 89 TSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAK 168 (385)
Q Consensus 89 ~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 168 (385)
.++.+....+++++.+.+.|+.|.|..++++........+..-+ .|-+-++++..+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77888889999999999999999999999999999887777665 46777888999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 016673 169 IRGAVNQLFQLTTCLGILVANLIN 192 (385)
Q Consensus 169 ~r~~~~~~~~~~~~~g~~i~~~~~ 192 (385)
++.+-.++.......+.++|..+-
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhh
Confidence 999999999999999999987763
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=82.97 Aligned_cols=143 Identities=15% Similarity=0.068 Sum_probs=107.4
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV-------HISMLLLGRIFLGMGIG 151 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~r~l~G~~~g 151 (385)
+.++.+.+.....+.+...+..+.+|+++||+|.+|++.......+++..+.+... +.......-+..++..|
T Consensus 250 g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G 329 (417)
T COG2223 250 GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAG 329 (417)
T ss_pred CCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhc
Confidence 57888999999999999999999999999999999999999999999988887753 34444444444444444
Q ss_pred hhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc
Q 016673 152 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 223 (385)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (385)
.-...+..++..++|+ +-|.+.|+.....++|...-|..-+....... .++..|++.....+++.+..+.
T Consensus 330 ~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg-~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 330 LGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG-SYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred cCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566777777754 67999999999999998777766333333332 5888888888877777665544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.7e-07 Score=83.57 Aligned_cols=134 Identities=7% Similarity=-0.079 Sum_probs=93.6
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh-h-----hhHHHHHHHHHHHHhhhhhhhhhhhHHhh
Q 016673 89 TSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC-A-----VHISMLLLGRIFLGMGIGFGNQAVPLYLS 162 (385)
Q Consensus 89 ~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~-~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~ 162 (385)
.....+...+..+++|+++||+|+|+++.++.+...++...... . .+++.+.+.-+...++.|........++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 34456778889999999999999999999998877777643222 1 35666666666655666666667777787
Q ss_pred hcCCC---------------------ccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh
Q 016673 163 EMAPA---------------------KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG 221 (385)
Q Consensus 163 ~~~~~---------------------~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 221 (385)
+++|+ ++-|.+.|+......+|..+-|.+-+...... -++...|+...+..+++.++.
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~ 450 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT-GSPVGAMKVFLIFYIVCVLLT 450 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHH
Confidence 77764 14567888888888888888885522222222 257777887777777766655
Q ss_pred cc
Q 016673 222 LF 223 (385)
Q Consensus 222 ~~ 223 (385)
+.
T Consensus 451 w~ 452 (462)
T PRK15034 451 WL 452 (462)
T ss_pred HH
Confidence 44
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-07 Score=86.20 Aligned_cols=132 Identities=5% Similarity=-0.056 Sum_probs=100.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++.+.++....+.++..++.++.|++.||+|||+++..+..+..++.++..+.++.+ .+..-.+.|++.+..+|...
T Consensus 291 g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~~~ 369 (438)
T PRK10133 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPTIF 369 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999998888877776666655543 34567789999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcc-hhHHHhhhHHHHH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG-WRLSLGLATVPAT 215 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-wr~~f~~~~~~~~ 215 (385)
+...|..|++ .+.+.++..... +|..++|.+.+... +..| -|..|++..+..+
T Consensus 370 s~a~~~~~~~-~~~as~l~~~~~-~g~~~~~~i~G~l~--~~~g~~~~~~~v~~~~~~ 423 (438)
T PRK10133 370 SLGIKNLGQD-TKYGSSFIVMTI-IGGGIVTPVMGFVS--DAAGNIPTAELIPALCFA 423 (438)
T ss_pred HHHHcccchh-hccchhHHhHHh-ccchHHHHHHHHHH--HhccchHHHHHHHHHHHH
Confidence 9999988653 567777776544 56666666633333 3344 5677765444333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.7e-07 Score=82.70 Aligned_cols=115 Identities=12% Similarity=0.067 Sum_probs=90.8
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHhhhhhhhh
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC-----AVHISMLLLGRIFLGMGIGFGNQ 155 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~ 155 (385)
+....+++.+...++..++.+++++++||+|+|+.+.++..+..++.+.... .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777888999999999999999999999888877766655432 34667777888899999999999
Q ss_pred hhhHHhhhcCC-------CccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 016673 156 AVPLYLSEMAP-------AKIRGAVNQLFQLTTCLGILVANLINYGT 195 (385)
Q Consensus 156 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 195 (385)
...++++|..+ +++.|...+......-+|..+++.+.+..
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999966 33345688888888888888888775443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.5e-07 Score=68.75 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=96.0
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHH
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLY 160 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 160 (385)
++..--.-.++.+....+++++.+.+.+++|.|+.++++.+...+-.... +-++.+.++.+-++.|++.+..+++.-.+
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~y 113 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTY 113 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence 34333445566677778888999999999999999999999988655544 45678899999999999999999999999
Q ss_pred hhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 016673 161 LSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGT 195 (385)
Q Consensus 161 i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 195 (385)
+.+..++++|++-.+++......+.++|.++....
T Consensus 114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998875443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.4e-06 Score=78.40 Aligned_cols=117 Identities=16% Similarity=0.036 Sum_probs=89.4
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH---h--hhhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA---C--AVHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~---~--~~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.++.+.++......++..++.+..+++.||+|+|+.+........++.+... . .++.+..++...+.|++.+..
T Consensus 234 g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (401)
T PRK11043 234 GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAI 313 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 46888889888888889999999999999999999877666555554443322 2 345555666677889989988
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE 196 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 196 (385)
.+...+...|..| ++|+++.++.+.....+...++.+.+...
T Consensus 314 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 355 (401)
T PRK11043 314 YPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALI 355 (401)
T ss_pred HHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 8888888777775 57999999999887777777777754443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-06 Score=81.69 Aligned_cols=112 Identities=15% Similarity=0.119 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhhhhhhhhhhHHh
Q 016673 84 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC--AVHISMLLLGRIFLGMGIGFGNQAVPLYL 161 (385)
Q Consensus 84 ~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~i 161 (385)
..+.+.....+...++.+++++++||+|+|+.+..+.++..++.+...+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666677788889999999999999999999888766654443322 35777788888999999999999999999
Q ss_pred hhcCCC-------ccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 016673 162 SEMAPA-------KIRGAVNQLFQLTTCLGILVANLINYGT 195 (385)
Q Consensus 162 ~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 195 (385)
+|..+. ++.|...+.......+|..+|+.+++..
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998862 2345677888888888888888876543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-05 Score=71.98 Aligned_cols=116 Identities=9% Similarity=-0.034 Sum_probs=87.1
Q ss_pred CchHHHHHHHHHHHHHHhH-hhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh----h---------------------
Q 016673 81 DNQVLTLFTSSLYFAGLVS-TFGASYVTRSRGRRASIMVGSVSFFIGAILNACA----V--------------------- 134 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~-~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~----~--------------------- 134 (385)
..+.+.++-+...+..++. .++.+++++|++|++.+-.....+.....++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3467888888887777666 8999999999999999887777666666665543 1
Q ss_pred ------hHHHHHHHHHHHHhhhhhhhh-hhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016673 135 ------HISMLLLGRIFLGMGIGFGNQ-AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE 196 (385)
Q Consensus 135 ------~~~~~~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 196 (385)
+.|...+.-+...+-.....+ ....+.+|.++.+|-.+..++...+.++|.++++.+.....
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133333444455554555554 67888999999999999999999999999999997754433
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.6e-06 Score=72.68 Aligned_cols=151 Identities=16% Similarity=0.154 Sum_probs=113.3
Q ss_pred hhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh-cchHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 016673 61 FPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAVHISML 139 (385)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 139 (385)
.|.+..|.+ +|..+.|++.+...+.....++....+++|. .+|+..+.......++...+.+.+.-..+
T Consensus 231 LP~ili~~G----------~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~ 300 (395)
T COG2807 231 LPAILIDRG----------LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPI 300 (395)
T ss_pred HHHHHHHcC----------CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 555555554 8999999999999999999999999999964 57777888888888888887776543333
Q ss_pred HHHHHHHHhhhhhhhhhhhHHhhhcCCC-ccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHH
Q 016673 140 LLGRIFLGMGIGFGNQAVPLYLSEMAPA-KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMF 218 (385)
Q Consensus 140 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 218 (385)
.- -++.|+|.|..++....++.+..++ ++-++..++.+....+=...||.+.+.+.+..+ +|+......+...+...
T Consensus 301 lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g-sw~~~~~~l~~~~i~m~ 378 (395)
T COG2807 301 LW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG-SWSAPLVLLALATLLML 378 (395)
T ss_pred HH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC-ChHHHHHHHHHHHHHHH
Confidence 33 4899999999999999999988865 444566667776666666778888655555444 79988877666666555
Q ss_pred Hhhcc
Q 016673 219 VGGLF 223 (385)
Q Consensus 219 ~~~~~ 223 (385)
+.-+.
T Consensus 379 i~Gl~ 383 (395)
T COG2807 379 IFGLR 383 (395)
T ss_pred HHHhh
Confidence 44433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=81.47 Aligned_cols=140 Identities=12% Similarity=0.073 Sum_probs=110.6
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhc--chHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG--RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
.+..+.|...--..+.+.++..+.|.++||++ |-.....+++..++++....+++++.++++-++..|++.+......
T Consensus 303 ~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl 382 (464)
T KOG3764|consen 303 TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASL 382 (464)
T ss_pred CCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 35557888777888999999999999999999 5444556666777777777889999999999999999888877766
Q ss_pred hHHhhhcCCCc------cchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh
Q 016673 158 PLYLSEMAPAK------IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG 221 (385)
Q Consensus 158 ~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 221 (385)
.....+..+.+ .-|.+.++...++++|..+||.++ ....+..|++|...+.++..++...+.
T Consensus 383 ~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~g--g~iv~~iGF~wl~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 383 IPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFG--GSLVEAIGFEWLMTIIGILNLIYAPVL 450 (464)
T ss_pred hhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhcccccc--chheeehhHHHHHHHHHHHHHHHHHHH
Confidence 66666555443 346889999999999999999994 455556789998888888777765444
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.3e-05 Score=68.38 Aligned_cols=276 Identities=11% Similarity=-0.016 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh--------h----hHHHHHHHH---HHHHhhh
Q 016673 86 TLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA--------V----HISMLLLGR---IFLGMGI 150 (385)
Q Consensus 86 ~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~--------~----~~~~~~~~r---~l~G~~~ 150 (385)
+...-.-.+...+.++..|...||..|.++.-.+.+..-++..+++.. + +-+....+. .+.|.-.
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 344444556778889999999999999999877766654443333221 1 112222221 1222111
Q ss_pred hhhh-hhhhHHhhhcC------CCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc
Q 016673 151 GFGN-QAVPLYLSEMA------PAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 223 (385)
Q Consensus 151 g~~~-~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (385)
-... ....++=.||. +++.+.+..+...-.--+..+++|++.+ ...+..+.+....+.+...++..+.=++
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG--~l~t~~s~~~~~~~i~~~N~~S~~vEy~ 198 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVG--LLMTFASPVIAAIFIAGWNLASVFVEYF 198 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11111223443 2344555566666666678899999844 3334446776666666666655443211
Q ss_pred ----c-ccchhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHH
Q 016673 224 ----L-PETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQ 298 (385)
Q Consensus 224 ----~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (385)
+ ...|. +..+++.++..+..+.. ...+.+.+........+.-++....|+..++.+....-+-..+ +.
T Consensus 199 ~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alal-----LY 271 (432)
T PF06963_consen 199 LLARVYNSVPA-LAVKKRSSESESSSDEE-SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALAL-----LY 271 (432)
T ss_pred HHHHHHHhChH-hcCCCCCcccccccccc-ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHH-----HH
Confidence 1 22232 22222111110000000 0000111111111112222333456666666554333332222 11
Q ss_pred ccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
+. ...+...+..|+...|+++...|..-....+.++.+.+...++.+|+|..+.-+++......+..+-...
T Consensus 272 ~T-VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~ 343 (432)
T PF06963_consen 272 FT-VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVS 343 (432)
T ss_pred HH-HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 11 2234555666777889999999999999999999999999999999998887777766655555444433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-06 Score=75.62 Aligned_cols=115 Identities=16% Similarity=0.223 Sum_probs=87.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhh----hcchHHHHH-HHHHHHHHHHHHHhhhhH-----------------
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRRASIMV-GSVSFFIGAILNACAVHI----------------- 136 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~----~Grr~~~~~-~~~~~~i~~~~~~~~~~~----------------- 136 (385)
+++..+.+.+-....+...+.+|+.|..+|| |||||.++. +.....++.++..++.++
T Consensus 63 Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 63 GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 3677777777777888889999999999996 898877655 455556666666665543
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchh-HHHHHHHHHHHHHHHHHHHHH
Q 016673 137 SMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGA-VNQLFQLTTCLGILVANLINY 193 (385)
Q Consensus 137 ~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~i~~~~~~ 193 (385)
..++++--+.=++....+..+.+++.|...+++|.+ +.+.+....++|..+|...+.
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 344445555556677788899999999997776666 999999999999999988854
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-05 Score=72.91 Aligned_cols=117 Identities=12% Similarity=0.023 Sum_probs=88.4
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHH-HHHHHHHh--hhhHHHHHHHHHHHHhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFF-IGAILNAC--AVHISMLLLGRIFLGMGIGFGNQ 155 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~-i~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~ 155 (385)
+.++.+.+++......+..++.++.+++.||++++........... +....... ..+.+.+.+..++.|++.+...+
T Consensus 239 g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 318 (394)
T PRK11652 239 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFP 318 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999988899999999999999999984433322222222 22222222 23567778888999999999999
Q ss_pred hhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016673 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE 196 (385)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 196 (385)
...++..|..| ++++.+.++.+....+|..+++.+++...
T Consensus 319 ~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 319 LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999886 57899999999999999999999865443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=79.30 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=79.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh--hh--hHHHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC--AV--HISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~--~~--~~~~~~~~r~l~G~~~g~~~ 154 (385)
+.++.+.+++.+...+...++.++.|+++||+|||+.+..+......+..+..+ .+ +.+...+.-.+.++..|...
T Consensus 257 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (366)
T TIGR00886 257 GLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGN 336 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcccc
Confidence 467888999999999999999999999999999998888777776666655543 22 55555555555555556566
Q ss_pred hhhhHHhhhcCCCccchhHHHHHHHHHHHH
Q 016673 155 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLG 184 (385)
Q Consensus 155 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 184 (385)
.....++.|..| ++|+.+.|+.+....+|
T Consensus 337 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 337 GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 666777788876 68999999988776654
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.4e-06 Score=76.64 Aligned_cols=128 Identities=7% Similarity=-0.089 Sum_probs=94.1
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHH
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLY 160 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 160 (385)
+....+...+.+..+..++.++++++.||+++|+++.+..++..+..++....++... ..+-++.|++.+..+|...++
T Consensus 267 ~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl 345 (410)
T TIGR00885 267 TAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGI 345 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666788999999999999999999999999999998888888776544 566778888899999999999
Q ss_pred hhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccC---Cc-chhHHHhhhH
Q 016673 161 LSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH---PW-GWRLSLGLAT 211 (385)
Q Consensus 161 i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~---~~-~wr~~f~~~~ 211 (385)
..+..+++.+....++. ++ .+|..+.|++.+...... .. +.+..|++..
T Consensus 346 ~~~~~g~~~~~~s~~l~-~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~ 398 (410)
T TIGR00885 346 ALKGLGQDTKYGAAGLV-MA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPL 398 (410)
T ss_pred HHhhhhhhhhhhHHHHH-HH-HhccchHHHHHHHHHHHhcccccCccchHHHHHH
Confidence 99999766543333333 33 389999998865555421 11 3666666533
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-05 Score=74.49 Aligned_cols=142 Identities=11% Similarity=0.031 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhc-chHHHHHHHHHHHHHHHHHHhhhh---------------------HHHHHHHHH
Q 016673 87 LFTSSLYFAGLVSTFGASYVTRSRG-RRASIMVGSVSFFIGAILNACAVH---------------------ISMLLLGRI 144 (385)
Q Consensus 87 ~~~s~~~l~~~~~~~~~g~l~d~~G-rr~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~r~ 144 (385)
+....+.+...+.+++..++.+|+| ||++..++.++.+++.+...+.++ .+..++.-.
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 4444555555677788889999999 577779998888888887775443 367778889
Q ss_pred HHHhhhhhhhhhhhHHhhhcCCC--ccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-
Q 016673 145 FLGMGIGFGNQAVPLYLSEMAPA--KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG- 221 (385)
Q Consensus 145 l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~- 221 (385)
+.|+..+.....-++++++..++ ++.|..+|+.+.+..+.+++..+..+......+.+-.+.+.+.++..+++.+..
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~ 468 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL 468 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985 455999999999999999998876544222222345677888888888776665
Q ss_pred cccccch
Q 016673 222 LFLPETP 228 (385)
Q Consensus 222 ~~~~e~~ 228 (385)
+.+|+++
T Consensus 469 ~~~~~~~ 475 (477)
T TIGR01301 469 ILLPRPR 475 (477)
T ss_pred HhCCCCC
Confidence 4467654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.3e-07 Score=81.46 Aligned_cols=140 Identities=15% Similarity=0.085 Sum_probs=119.5
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhH
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPL 159 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 159 (385)
-.+...|........+-++.-++.+++.+++|+-+++.+++...++=.+..++.+|.|..+...+++|+..+..+.+..+
T Consensus 403 ~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~s 482 (618)
T KOG3762|consen 403 GIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIIS 482 (618)
T ss_pred CcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHH
Confidence 35666677777788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCccchhHHHHHHH-HHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh
Q 016673 160 YLSEMAPAKIRGAVNQLFQL-TTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG 221 (385)
Q Consensus 160 ~i~~~~~~~~r~~~~~~~~~-~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 221 (385)
|+++..||+-|..+.++.+. ..++|-.+|.++|+... ..++-|..|.+.++.+++.++..
T Consensus 483 Y~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v--~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 483 YASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV--ERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh--eeehhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998655 45677778888854333 34678888888887777765544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.3e-06 Score=77.78 Aligned_cols=137 Identities=15% Similarity=0.086 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhcchH-------HHHHHHHHHHHHHHHHH-----hh-----hhHHHHHHHHHHHH
Q 016673 85 LTLFTSSLYFAGLVSTFGASYVTRSRGRRA-------SIMVGSVSFFIGAILNA-----CA-----VHISMLLLGRIFLG 147 (385)
Q Consensus 85 ~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~-------~~~~~~~~~~i~~~~~~-----~~-----~~~~~~~~~r~l~G 147 (385)
.+++.+...+...+..++.+++.||.|+|+ -+.+|.++.+++.+..+ .+ .+.++++..-++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 355666666778888999999999999997 37777777776664321 21 35777888899999
Q ss_pred hhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccC--------CcchhHHHhhhHHHHHHHHH
Q 016673 148 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH--------PWGWRLSLGLATVPATLMFV 219 (385)
Q Consensus 148 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--------~~~wr~~f~~~~~~~~~~~~ 219 (385)
+|.+...+...+++.+..|++.++.+++++.....+|..+|..++....... .....+.|...++.+++..+
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v 470 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV 470 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988864332111 01245666666655555444
Q ss_pred hh
Q 016673 220 GG 221 (385)
Q Consensus 220 ~~ 221 (385)
..
T Consensus 471 ~~ 472 (489)
T PRK10207 471 VM 472 (489)
T ss_pred HH
Confidence 43
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6e-06 Score=76.19 Aligned_cols=144 Identities=15% Similarity=0.098 Sum_probs=96.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcc---------hHHHHHHHHHHHHHHHHHHhhhh--H-HHHHHHHHHH
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGR---------RASIMVGSVSFFIGAILNACAVH--I-SMLLLGRIFL 146 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Gr---------r~~~~~~~~~~~i~~~~~~~~~~--~-~~~~~~r~l~ 146 (385)
|.+..+.|++.++..+...+..+++|.++||.-+ |..=.++....+++.+..++.++ . ..+++.-+-.
T Consensus 290 ~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~ 369 (466)
T KOG2532|consen 290 GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAI 369 (466)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHH
Confidence 6789999999999999999999999999998754 33334455555555556666542 2 1222222222
Q ss_pred HhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhcccc-CCcchhHHHhhhHHHHHHHHHhhccc
Q 016673 147 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI-HPWGWRLSLGLATVPATLMFVGGLFL 224 (385)
Q Consensus 147 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (385)
++ .|...+....-..|.. +++-+.++++.+....+...++|.+.+..... +...||++|++.+++.++..+...++
T Consensus 370 ~~-~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 370 GL-SGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HH-cccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 22 2222222223333334 56779999999999999999999995544431 23579999999998888876555443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-05 Score=72.36 Aligned_cols=111 Identities=15% Similarity=0.222 Sum_probs=91.4
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV--HISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
++.+..+.......+..++.+++.++.+|+|+|+++.++.++.+++.++.-+.+ +.+..++..++.+++.+...+...
T Consensus 270 ~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~w 349 (467)
T COG2211 270 PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPW 349 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccH
Confidence 455666777777778888899999999999999999999999999999988865 788888999999999999999999
Q ss_pred HHhhhcCC-------CccchhHHHHHHHHHHHHHHHHHHH
Q 016673 159 LYLSEMAP-------AKIRGAVNQLFQLTTCLGILVANLI 191 (385)
Q Consensus 159 ~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~i~~~~ 191 (385)
++++|..+ ++.-|...+......=+|..++..+
T Consensus 350 am~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 350 AMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred HHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 99998875 2334566677776666777776655
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-06 Score=56.88 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=58.5
Q ss_pred HHHHHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHH
Q 016673 294 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE 360 (385)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~ 360 (385)
..+..+.+......|.|.++++.|+|+.++|.+.++..+..+++.++.|.++||.++++..+.....
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 4556667778888999999999999999999999999999999999999999999988877665443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-06 Score=77.06 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=103.8
Q ss_pred HHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHhhhhhhhhhhhHHhhhcC
Q 016673 94 FAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVH--------ISMLLLGRIFLGMGIGFGNQAVPLYLSEMA 165 (385)
Q Consensus 94 l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~ 165 (385)
.++..+-.+...+.|+.|||+..+.+.++..+..+..+...| ...+.+..++.-+|-+ ..+..+-+|.+
T Consensus 359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~F 435 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIF 435 (538)
T ss_pred HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhc
Confidence 344557788889999999999999999999999999988766 1223333444444432 34556678999
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhccccC-----CcchhHHHhhhHHHHHHHHHhhcccccchh
Q 016673 166 PAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH-----PWGWRLSLGLATVPATLMFVGGLFLPETPN 229 (385)
Q Consensus 166 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~ 229 (385)
|.+-|+..-|+..+..-+|.++|... +....+ ..+.|+.+++.+...++..+..+++||+.+
T Consensus 436 ParvR~t~hGIsAA~GK~GAivg~~~--F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 436 PARVRSTCHGISAASGKAGAIVGAFG--FLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred hHHHhhhhhhHHHHhccchHHHHHHH--hhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 99999999999999999999999887 555555 468899999999999998888899998853
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.7e-05 Score=65.78 Aligned_cols=144 Identities=12% Similarity=0.082 Sum_probs=118.8
Q ss_pred ccCCchHHHHHHHHHHHHHHhHhhhhhhhhh-hhcchHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHhhhhhh
Q 016673 78 CKYDNQVLTLFTSSLYFAGLVSTFGASYVTR-SRGRRASIMVGSVSFFIGAILNAC---AVHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 78 ~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d-~~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~r~l~G~~~g~~ 153 (385)
++++..+..-++.....|..++-...|++.. |.++|+.-.+++....++.....+ ..+.+.+...-++.|++.|..
T Consensus 239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f 318 (403)
T PF03209_consen 239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLF 318 (403)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHH
Confidence 3789999999999999999999999999887 678888888888888777665443 467889999999999999999
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhcccc--------CCcchhHHHhhhHHHHHHHHHhh
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI--------HPWGWRLSLGLATVPATLMFVGG 221 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~--------~~~~wr~~f~~~~~~~~~~~~~~ 221 (385)
.....+...|...+++.|..+|.+.....++..++..+++..... ...+|..+|.+.++..++++.+.
T Consensus 319 ~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 319 TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888888887654321 22467788888777666665544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2e-05 Score=67.61 Aligned_cols=247 Identities=12% Similarity=0.094 Sum_probs=153.5
Q ss_pred HHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhH
Q 016673 94 FAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAV 173 (385)
Q Consensus 94 l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 173 (385)
-.+.+.-.+.=.+.|..-.|++++.-.+.......+.-+.++.+.+-+..++.|...+ ...+-++++-+..+++++.++
T Consensus 53 YSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrv 131 (433)
T KOG3810|consen 53 YSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRV 131 (433)
T ss_pred HHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHH
Confidence 3445555666678999999999999888888888899999999999999999999654 567889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCHHHHHHHHHHHhCCCch
Q 016673 174 NQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANV 253 (385)
Q Consensus 174 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (385)
.+..-+..-.|...|..++-.+...+..++...-.+......++....+++|..++....+.+.++.. ..+....+.
T Consensus 132 t~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v~~~e~~~~- 208 (433)
T KOG3810|consen 132 TGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKIS--VGDLEEMNP- 208 (433)
T ss_pred HHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccce--eccchhcCc-
Confidence 99999999999999998877666666667777777766666666677778887765443333222111 111111111
Q ss_pred hHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcCCCC--chHHHHHHHHH
Q 016673 254 DAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGS--GAALYSSVITG 331 (385)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~~~~~~~~~ 331 (385)
..+..+. .........+.+.+..+++...... +-+....++++-...|...+=++..-.+ ..-|..-+...
T Consensus 209 ~~~~~~~--l~~~~~~l~~~l~~~y~np~ll~WS-----lWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~t 281 (433)
T KOG3810|consen 209 QASYMSY--LRGAFVLLWRDLQECYSNPRLLKWS-----LWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVST 281 (433)
T ss_pred cchhhHH--HHHHHHHHHHHHHHHhcCchhhhhH-----HHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHH
Confidence 0000000 0011111122233333433322222 1233445556666666555545432111 11244455566
Q ss_pred HHHHHHHHHHHHhhccccch
Q 016673 332 IALCIAALISMAFVDKFGRR 351 (385)
Q Consensus 332 ~~~~~~~~~~g~l~d~~~~r 351 (385)
+.++++.+..|.+.-...|.
T Consensus 282 lLGa~~~~~~g~l~i~w~r~ 301 (433)
T KOG3810|consen 282 LLGAIAALAAGYLNINWNRW 301 (433)
T ss_pred HHHHHHHHHHHheeeccchh
Confidence 67777788888875555554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.1e-06 Score=56.25 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=57.9
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLL 140 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 140 (385)
++|.++.+++.+..++||.+|.+...++.++..+++.+..+.+...+.++.+++.++.+.+.
T Consensus 23 ~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 23 GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 58999999999999999999999999999999999999999999999999999998877653
|
Note that many members are hypothetical proteins. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=6e-05 Score=70.31 Aligned_cols=111 Identities=9% Similarity=0.031 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhhhhhhhhhHH
Q 016673 83 QVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA--VHISMLLLGRIFLGMGIGFGNQAVPLY 160 (385)
Q Consensus 83 ~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~ 160 (385)
...+.+.+.+.++..++.+++++++||+|+|+.+..+..+..+..++..+. ++.+.+.+.-++.|++.+...+...++
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m 342 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888889999999999999999998876555444434433332 233344555567788877777777778
Q ss_pred hhhcCC-------CccchhHHHHHHHHHHHHHHHHHHHHH
Q 016673 161 LSEMAP-------AKIRGAVNQLFQLTTCLGILVANLINY 193 (385)
Q Consensus 161 i~~~~~-------~~~r~~~~~~~~~~~~~g~~i~~~~~~ 193 (385)
+.|..+ +++.|...+......-+|..+++.+++
T Consensus 343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g 382 (460)
T PRK11462 343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIG 382 (460)
T ss_pred HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766 233345556666667677777766544
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00013 Score=69.22 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhH-------------HHHHHHHHHHHhhhhh
Q 016673 86 TLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHI-------------SMLLLGRIFLGMGIGF 152 (385)
Q Consensus 86 ~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~~~r~l~G~~~g~ 152 (385)
.+...+......++..+...+.||+|||+.++.+.....++.++.+..... ..+...-+.......+
T Consensus 332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g 411 (513)
T KOG0254|consen 332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG 411 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 445555566667777777999999999999999999999999988764211 1122222222222333
Q ss_pred hhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHH--hhcccccch
Q 016673 153 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV--GGLFLPETP 228 (385)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~--~~~~~~e~~ 228 (385)
..+....+.+|.+|.+-|+++.++..........+-... ........++...|...+..+.+... ..+++||+.
T Consensus 412 ~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~--~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 412 WGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFF--FPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred cccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 445556788999999999999998777666655443322 12221211234455554444444433 456689974
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0063 Score=56.62 Aligned_cols=117 Identities=11% Similarity=0.020 Sum_probs=79.1
Q ss_pred CchHHHHHHHHHHH-HHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh---------h----------------
Q 016673 81 DNQVLTLFTSSLYF-AGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA---------V---------------- 134 (385)
Q Consensus 81 ~~~~~~~~~s~~~l-~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~---------~---------------- 134 (385)
.++.+..+-....+ +..+...+..+++|+++|++++-+....+.....+.++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45566666665555 556678889999999999998876666655555544441 1
Q ss_pred ------hHHHHHHHHHHHHhhhhhhhh-hhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 016673 135 ------HISMLLLGRIFLGMGIGFGNQ-AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK 197 (385)
Q Consensus 135 ------~~~~~~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 197 (385)
+.|.+.+.-++.-+-.....+ .-..+..|.++.+|-.+..+++..+.++|.++++.+......
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333333333333333333 457788999999999999999999999999998877544443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.7e-07 Score=87.34 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=87.6
Q ss_pred HHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH--h---hhh----HHHHHHHHHHHHhhhh-hhhhhhhHH
Q 016673 91 SLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA--C---AVH----ISMLLLGRIFLGMGIG-FGNQAVPLY 160 (385)
Q Consensus 91 ~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~--~---~~~----~~~~~~~r~l~G~~~g-~~~~~~~~~ 160 (385)
...+...++.++...+.||+|||+.++.+..+.+++.+..+ . .++ -...+++-.+...+.+ +..+....+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~ 373 (451)
T PF00083_consen 294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIY 373 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccc
Confidence 33345566777778999999999999999999888888775 1 121 1112222222222222 334566688
Q ss_pred hhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHH-HHhhcccccch
Q 016673 161 LSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLM-FVGGLFLPETP 228 (385)
Q Consensus 161 i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~~ 228 (385)
..|.+|.+.|++..++......++..+++.+ .....+..+-...+.+.+..+++. .+..+++||+.
T Consensus 374 ~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~--~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 374 TAELFPTKVRSTGIGLSYAVGRIGGFIIPFL--FPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred ccccccccccccccccccccccccccccccc--cccccccccccccchhhHHHHHHHHhheeEEEeeCC
Confidence 8999999999999999999888888888877 333333323123444444444444 44457789984
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.3e-05 Score=69.14 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=65.3
Q ss_pred HHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccc-cchhHHHHhhHHHHHHHHHHHH
Q 016673 294 PAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKF-GRRAFFLEAGTEMIIYMVTTLH 370 (385)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~~~~~~~~~ 370 (385)
........++.+..++|.|+.+ +|+++.+++...........++.+++|+++||+ |||+.++++.++..++.+++..
T Consensus 17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~ 95 (493)
T PRK15462 17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA 95 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH
Confidence 3344455677788889999876 899999999999999999999999999999999 9999999999888888776653
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00053 Score=63.16 Aligned_cols=133 Identities=15% Similarity=0.077 Sum_probs=82.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA-----CAVHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.++.+.++.......+..++..+.+++.++.++++.......+..++.++.. ..++++..+++.++.++|.+..
T Consensus 250 g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~ 329 (413)
T PRK15403 250 GMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLI 329 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence 57888999988888888888888888877555554443333333333332222 1234444567888889998888
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHH
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPAT 215 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~ 215 (385)
.+......- .-.+..+|++.++.+.....+...++..++..... +=++.|...++...
T Consensus 330 ~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~ 387 (413)
T PRK15403 330 FPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN---GGRLPFHLLAVVAG 387 (413)
T ss_pred hHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHH
Confidence 877775332 22233578888888888777777777775443322 33455544444333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00019 Score=63.25 Aligned_cols=135 Identities=10% Similarity=0.033 Sum_probs=103.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.+..+.+...+.+..+..+|.+.+.++..|+...|.+.+..+...+-++..++.++...+. +-++.|+..+..+|...
T Consensus 268 g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~-~l~~ig~F~simfPTIf 346 (422)
T COG0738 268 GLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY-ALFLIGLFNSIMFPTIF 346 (422)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHhHHHHHHHH
Confidence 46888999999999999999999999999999999999999988888888888888855444 55778888999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMF 218 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 218 (385)
+...+..| ++ ....|..-.+..+|..+-|.+. ....+..+-+..+.....+|.+.+
T Consensus 347 slal~~l~-~~-ts~~s~~l~maivGGAiiP~l~--G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 347 SLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQ--GVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHhccC-cc-ccccceeeeeheecchHHHHHH--HHHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999998 33 4444555566677888888884 344444456666553344444333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00033 Score=66.67 Aligned_cols=132 Identities=21% Similarity=0.147 Sum_probs=96.6
Q ss_pred HHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHhhhhhhhhhhhHHhhhcCCCccch
Q 016673 95 AGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISM---LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 171 (385)
Q Consensus 95 ~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 171 (385)
.........+...|++|||.....+..+..++.+..++..+... ..+...+...+.+..+.....+..|.+|...|.
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN 441 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 44555556689999999999999999999999999998765443 556666666677777777899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHH-Hhhcccccchh
Q 016673 172 AVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMF-VGGLFLPETPN 229 (385)
Q Consensus 172 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~~~ 229 (385)
.+.+.......+|.+++|.+...... ....+... +.+....+.. +...++||+..
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~--~~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLI--LFGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHH--HHHHHHHHHHHHHHhcCcccCC
Confidence 99999999999999999998432322 11122222 2233344433 44477898753
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00021 Score=63.97 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcC
Q 016673 86 TLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMA 165 (385)
Q Consensus 86 ~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~ 165 (385)
+.+.-+-.+...+..+.+.+..+|+..+.-......+..++.++.++++|.+.=+++-.+.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44445555666677777888899988776677777888999999999999999999999999999998888877644 55
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc-ccc
Q 016673 166 PAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF-LPE 226 (385)
Q Consensus 166 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 226 (385)
++ ...+-+..+.+.+.++|+..-..+.. ...+-|..+.+...+.++..+..++ +|+
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 43 34677888888888888776322222 2344577777777666555554444 443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.8e-05 Score=61.21 Aligned_cols=86 Identities=10% Similarity=0.228 Sum_probs=64.3
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhH
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPL 159 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 159 (385)
....++|.+.-..+-...+...+.|.++|+-|||+.-+.-++...++++ .-.++++-.++++|.+-|++.+..+.+..+
T Consensus 69 FgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFEs 147 (454)
T KOG4332|consen 69 FGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFES 147 (454)
T ss_pred ccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHHH
Confidence 4566677766666666777888889999999999965554444444332 334678999999999999999999888877
Q ss_pred H-hhhcCC
Q 016673 160 Y-LSEMAP 166 (385)
Q Consensus 160 ~-i~~~~~ 166 (385)
+ +.|.-+
T Consensus 148 WliaEHne 155 (454)
T KOG4332|consen 148 WLIAEHNE 155 (454)
T ss_pred HHHHHhhh
Confidence 5 667653
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=68.53 Aligned_cols=148 Identities=13% Similarity=0.054 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHH-HHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhhhhhhhhhhHH
Q 016673 84 VLTLFTSSLYFAGLVSTFGASYVTRSRGRRASI-MVGSVSFFIGAILNAC--AVHISMLLLGRIFLGMGIGFGNQAVPLY 160 (385)
Q Consensus 84 ~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~-~~~~~~~~i~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 160 (385)
..++....+.++..+++.+.|.+..+.+|-|.. +++.++..++.-.++. .+|....+..-++.|++.|.........
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~ 429 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI 429 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence 567888888899999999999999988765554 5666666554333333 3466666788899999999998888888
Q ss_pred hhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhcccc------------------------------------------
Q 016673 161 LSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI------------------------------------------ 198 (385)
Q Consensus 161 i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~------------------------------------------ 198 (385)
..-..|+++-+.+.++..+.-.+|..+|..+-......
T Consensus 430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~i 509 (599)
T PF06609_consen 430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAI 509 (599)
T ss_pred eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhC
Confidence 88888999999999999998888888886552111100
Q ss_pred C------------------CcchhHHHhhhHHHHHHHHHhhcccccchhHH
Q 016673 199 H------------------PWGWRLSLGLATVPATLMFVGGLFLPETPNSL 231 (385)
Q Consensus 199 ~------------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~ 231 (385)
. ..++|++|+....+++++++..+++++..++.
T Consensus 510 PGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~m 560 (599)
T PF06609_consen 510 PGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKYM 560 (599)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhh
Confidence 0 02478889988888888888888887765443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0032 Score=55.21 Aligned_cols=138 Identities=16% Similarity=0.130 Sum_probs=82.3
Q ss_pred HHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhhhhh--
Q 016673 31 MVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTR-- 108 (385)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d-- 108 (385)
..+.+-...+|...+..+. +|.+++.- +.|.++.+...-++. -...-+++.++.|
T Consensus 34 llLl~LYllQGiP~GL~~~---iP~lL~ak------------------~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~ 90 (510)
T KOG3574|consen 34 LLLLFLYLLQGIPLGLIGA---IPLLLQAK------------------GVSYTSQAIFSFAYW--PFSLKLLWAPIVDSV 90 (510)
T ss_pred HHHHHHHHHcCCchhHhhh---hHHHhcCC------------------Ccchhhhhhhhhhhh--HHHHHHHHHhhhHHH
Confidence 3333445677887777662 24444311 346655554433322 1234567888999
Q ss_pred ---hhcchHHHHH-HHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhH
Q 016673 109 ---SRGRRASIMV-GSVSFFIGAILNAC-----------AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAV 173 (385)
Q Consensus 109 ---~~Grr~~~~~-~~~~~~i~~~~~~~-----------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 173 (385)
|+||||.-++ +..+.+......+. .+|...+...-++.-+..+.-..+.-.+.-.+..+++-|-+
T Consensus 91 y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgya 170 (510)
T KOG3574|consen 91 YSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYA 170 (510)
T ss_pred HHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCch
Confidence 9999986433 22222222222222 23444454455666666666667777787888888888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016673 174 NQLFQLTTCLGILVANLI 191 (385)
Q Consensus 174 ~~~~~~~~~~g~~i~~~~ 191 (385)
......+...|..++..+
T Consensus 171 ST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 171 STCQSVGQTAGYFLGNVV 188 (510)
T ss_pred hHHHHHHHhhhHHhhcce
Confidence 888877777777777666
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00089 Score=61.80 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=103.5
Q ss_pred cccCCchHHHHHHHHHHHHHHhHhhhhh-hhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhh
Q 016673 77 YCKYDNQVLTLFTSSLYFAGLVSTFGAS-YVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 155 (385)
Q Consensus 77 ~~~~~~~~~~~~~s~~~l~~~~~~~~~g-~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 155 (385)
.+++++.+.+...+.......+++.+.. .+...+|-|+....|+..-.+..+..+++++.|+......+.++ .....+
T Consensus 271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~-~~~~~p 349 (463)
T KOG2816|consen 271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVAL-AGIVFP 349 (463)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHh-hcchhH
Confidence 3468999999888888888888888877 77888999999999999999999999999999999999988888 567888
Q ss_pred hhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 016673 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN 192 (385)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 192 (385)
...+.++.+.+++++|++.++....-++...++|.+-
T Consensus 350 a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~ 386 (463)
T KOG2816|consen 350 AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALY 386 (463)
T ss_pred HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHH
Confidence 9999999999999999999999999999999999883
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00058 Score=63.51 Aligned_cols=131 Identities=14% Similarity=0.063 Sum_probs=88.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhh----hcchHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS----RGRRASIMVGSVSFFIGA-ILNACAVHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~----~Grr~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.+..+.+.+...+..+.+++.+++|+++|| ..+|......+.+..+.. ......++.......-+....+....
T Consensus 305 ~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~ 384 (495)
T KOG2533|consen 305 GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIAT 384 (495)
T ss_pred CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHH
Confidence 3688899999999999999999999999999 777777777666665555 44444443444444444444556666
Q ss_pred hhhhhHHhhhcCCCcc-chhHHHHHHHHHHHHHHHHHHHHHhccccCC-cchhHHHhhhH
Q 016673 154 NQAVPLYLSEMAPAKI-RGAVNQLFQLTTCLGILVANLINYGTEKIHP-WGWRLSLGLAT 211 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-~~wr~~f~~~~ 211 (385)
.+.......+...++. |-...+....+.+.+.+++|.+ ......+ ++|...|....
T Consensus 385 ~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~--~~~~~ap~y~~~~~f~~~~ 442 (495)
T KOG2533|consen 385 AIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQL--FRSLDAPRYGWGAVFYMLV 442 (495)
T ss_pred HHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhh--cccccCcchhhhhHHHHHH
Confidence 6777777877775544 4455566666666766666666 3433333 57888874433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00023 Score=47.79 Aligned_cols=45 Identities=11% Similarity=0.207 Sum_probs=40.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHH
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSF 123 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~ 123 (385)
++++.++|.+.++..+...++.+++|.++||+|+++..+....+.
T Consensus 31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 589999999999999999999999999999999998887766543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00056 Score=62.03 Aligned_cols=107 Identities=17% Similarity=0.358 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---h------HHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCc---cchhHHHHHHHHH
Q 016673 114 ASIMVGSVSFFIGAILNACAV---H------ISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAK---IRGAVNQLFQLTT 181 (385)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~---~------~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 181 (385)
|+++++.++..+|.++..++. . .+.+.++-.+.++|.|+.-|...++++|.++++ +|.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 578888999999988854432 2 367889999999999999999999999999865 4667788899999
Q ss_pred HHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhc
Q 016673 182 CLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL 222 (385)
Q Consensus 182 ~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (385)
++|..+++.+ .....++.+|.+.|.+.++..++.++..+
T Consensus 82 n~G~~~~~~~--~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTL--VPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHC--CCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhccc--chhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999887 44444567999999998887777655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0016 Score=44.20 Aligned_cols=72 Identities=8% Similarity=0.042 Sum_probs=63.6
Q ss_pred HHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHhhh
Q 016673 303 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSNMI 374 (385)
Q Consensus 303 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 374 (385)
..+...+|...++.++|..+.+++.+...++.++|.+...++.++.++++.+..+.+...+....+++..+.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~ 80 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF 80 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 345667899999999999999999999999999999999999999888889999999999998888876643
|
Note that many members are hypothetical proteins. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00085 Score=58.77 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=108.1
Q ss_pred ccccCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhc--chHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhh
Q 016673 76 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG--RRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 76 ~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.++.++.+.|-+.+...+...+.+....+..||.. -|-.+..++.+..-..+..+.++....+..+-.+-.+..+..
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~ 369 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV 369 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHh
Confidence 445688999999999999999999999999999988 777888888888888888888899999999999999999999
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE 196 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 196 (385)
.+....++....|.++||.++|+......++-.+||.+++...
T Consensus 370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 9999999999999999999999999999999999999975444
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.098 Score=47.90 Aligned_cols=116 Identities=10% Similarity=-0.031 Sum_probs=84.1
Q ss_pred CchHHHHHHHHHHH-HHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh---------hh---------------
Q 016673 81 DNQVLTLFTSSLYF-AGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA---------VH--------------- 135 (385)
Q Consensus 81 ~~~~~~~~~s~~~l-~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~---------~~--------------- 135 (385)
.+..+.++-+...+ +..+..++.+++.++..|++++-+-+..+....+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 56677888888888 778899999999999999999888777777766666652 11
Q ss_pred --------HHHHHHHHHHHHhhhhhhhh-hhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016673 136 --------ISMLLLGRIFLGMGIGFGNQ-AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE 196 (385)
Q Consensus 136 --------~~~~~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 196 (385)
.|...+.-.+.-+-.+.... .-.....|....+|-.+..++++.+.+++..++..+.....
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~ 208 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS 208 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13333333333333333333 44567789999999999999999999999999988854444
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0024 Score=60.73 Aligned_cols=69 Identities=12% Similarity=0.023 Sum_probs=56.4
Q ss_pred hHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 302 MNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 302 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
.+.+..+.|.+.+++|+|..+.+.+..... ......++.|++.||+|+|+++.++.++..++.++.++.
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala 111 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALT 111 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888887889999999888776533 334566678999999999999999999999999988876
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.017 Score=52.81 Aligned_cols=136 Identities=16% Similarity=0.115 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhcch-------HHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHH
Q 016673 85 LTLFTSSLYFAGLVSTFGASYVTRSRGRR-------ASIMVGSVSFFIGAILNACA----------VHISMLLLGRIFLG 147 (385)
Q Consensus 85 ~~~~~s~~~l~~~~~~~~~g~l~d~~Grr-------~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~r~l~G 147 (385)
.++.++...+.-.+.+++..++..+.++| .-+-+++.+.+.+.++.... .+.++++..-++++
T Consensus 326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s 405 (498)
T COG3104 326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS 405 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 46777777888888888888888875544 23456666666666655443 25788999999999
Q ss_pred hhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhcc----ccCCcchhHHHhhhHHHHHHHHHh
Q 016673 148 MGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTE----KIHPWGWRLSLGLATVPATLMFVG 220 (385)
Q Consensus 148 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~----~~~~~~wr~~f~~~~~~~~~~~~~ 220 (385)
+|.=+..|...+++....|++-.+.+++.+......|..++..++.... ..+...-...|+..+...++..+.
T Consensus 406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~ 482 (498)
T COG3104 406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGIL 482 (498)
T ss_pred HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988887754222 222234555666666655554443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.015 Score=53.24 Aligned_cols=42 Identities=12% Similarity=0.065 Sum_probs=29.7
Q ss_pred hhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHH
Q 016673 150 IGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI 191 (385)
Q Consensus 150 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~ 191 (385)
.+--..+.-.+.-.+..+++++.+......+.+.|..++..+
T Consensus 132 ~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 132 CATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTV 173 (544)
T ss_pred HccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHH
Confidence 333444555666667778888888888888888887777766
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.013 Score=52.85 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=80.7
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHH--H---HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhh
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSF--F---IGAILNACAVHISMLLLGRIFLGMGIGFGNQ 155 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~--~---i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 155 (385)
..++..+....|.+|-.++.--...+ |+ |+..+.+.+-. . +.....-+.++.|..++.-+..|+..|..+.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 45677888888888877764433222 33 33333322222 2 2222333467899999999999999999999
Q ss_pred hhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 016673 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY 193 (385)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 193 (385)
-+...+.|-.++++|..+++....+-++|..++.+++.
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l 392 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL 392 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999853
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.069 Score=50.58 Aligned_cols=112 Identities=18% Similarity=0.150 Sum_probs=65.2
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHH---HHHH----HhhhhH-HHHHHHHHHHHhhhh
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIG---AILN----ACAVHI-SMLLLGRIFLGMGIG 151 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~---~~~~----~~~~~~-~~~~~~r~l~G~~~g 151 (385)
-+....+.+.+++.+|.++|+.+++++.++--|+.. .+-..+..++ ..+. ++.... ..+...-++.++..|
T Consensus 47 ~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (521)
T PRK03612 47 DSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG 125 (521)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999988744333322 1111111111 1111 111111 122334556778888
Q ss_pred hhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 016673 152 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY 193 (385)
Q Consensus 152 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 193 (385)
...|....+..+... ++-+...|-......+|.++|.++.+
T Consensus 126 ~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~ 166 (521)
T PRK03612 126 MEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFP 166 (521)
T ss_pred HHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHH
Confidence 888887776665432 22345566677777777777776654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0039 Score=57.66 Aligned_cols=150 Identities=12% Similarity=0.051 Sum_probs=108.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC----------AVHISMLLLGRIFLGM 148 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~r~l~G~ 148 (385)
|.++...+.+..+..++..++..+..+...++.-|+++..+.++.++..+.-.. .++.+-.+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 378999999998899999999999999888899999998888877776664221 1222333344566777
Q ss_pred hhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccC---C---cchhHHHhhhHHHHHHHHHhhc
Q 016673 149 GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH---P---WGWRLSLGLATVPATLMFVGGL 222 (385)
Q Consensus 149 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~---~---~~wr~~f~~~~~~~~~~~~~~~ 222 (385)
..+..+-....+++|..|+..-+...++.....++|..++..++..+...- . .+-.+..++..+..++.+.+..
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 777777888889999999999999999999999998888887765443221 1 1222444555555555566666
Q ss_pred ccccch
Q 016673 223 FLPETP 228 (385)
Q Consensus 223 ~~~e~~ 228 (385)
++|+..
T Consensus 411 lLp~~~ 416 (433)
T PF03092_consen 411 LLPPQK 416 (433)
T ss_pred HcCCCc
Confidence 677654
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.033 Score=50.98 Aligned_cols=125 Identities=19% Similarity=0.207 Sum_probs=94.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh------h----hHHHHHHHHHHHHh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA------V----HISMLLLGRIFLGM 148 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~------~----~~~~~~~~r~l~G~ 148 (385)
++++..+|..-+...+....+.....++.+|+|..|.=+.+......+..++..+ + +...++.+-.+.=+
T Consensus 289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~ 368 (432)
T PF06963_consen 289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI 368 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999998888877766655554431 1 33334444444444
Q ss_pred hhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcch
Q 016673 149 GIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGW 203 (385)
Q Consensus 149 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~w 203 (385)
|.=+......-++-|..|+++||...|.-....++-.++...++......++++|
T Consensus 369 GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~ 423 (432)
T PF06963_consen 369 GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGW 423 (432)
T ss_pred HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcCh
Confidence 4445666778889999999999999999999999988888888544444444444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0098 Score=54.60 Aligned_cols=70 Identities=9% Similarity=0.078 Sum_probs=61.4
Q ss_pred HHHHhHHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHhh
Q 016673 304 SILFYAPVIFQSLGFGSGA-ALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSNM 373 (385)
Q Consensus 304 ~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~ 373 (385)
......|.+.+++|++.++ .|.+...+..+..+..+++|+++||+|.|+.+..+.+...+..+++++...
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S 114 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS 114 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777789999999 999999999999999999999999999999999999888888888887643
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.054 Score=50.03 Aligned_cols=97 Identities=9% Similarity=0.047 Sum_probs=51.8
Q ss_pred HHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHH-Hh-------hhhHHHHHHHHHHHHhhhhhhhhhhhHHh
Q 016673 90 SSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILN-AC-------AVHISMLLLGRIFLGMGIGFGNQAVPLYL 161 (385)
Q Consensus 90 s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~-~~-------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i 161 (385)
-...+...+..+..-.+..|+..|.-+..++++..+..++. .+ ...++..++.-++.|++.+..+.....+.
T Consensus 52 ~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla 131 (437)
T TIGR00939 52 LASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLA 131 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhc
Confidence 34444444455555555566665333344433222222211 11 12566777778889999999888888877
Q ss_pred hhcCCCccchhHHHHHHHHHHHHHHHHHHH
Q 016673 162 SEMAPAKIRGAVNQLFQLTTCLGILVANLI 191 (385)
Q Consensus 162 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~ 191 (385)
+. +|++. ++.+..+.+++.+++.++
T Consensus 132 ~~-fp~~~----~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 132 GV-FPSTY----SSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred cc-CCHHH----HHHHHhcchhHHHHHHHH
Confidence 74 55443 344444444444444433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0016 Score=63.31 Aligned_cols=80 Identities=10% Similarity=-0.078 Sum_probs=66.6
Q ss_pred HHHHHHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHh
Q 016673 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSN 372 (385)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~ 372 (385)
+..+.+..........++.+.++++++..+.|++.+...++..++.++.+++.||.+||+.+.++.++++++.+++++..
T Consensus 40 ~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 40 CAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence 34444444344555566777777999999999999999999999999999999999999999999999999999988754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.041 Score=52.49 Aligned_cols=140 Identities=15% Similarity=0.155 Sum_probs=103.8
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhh----------------------
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVH---------------------- 135 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~~---------------------- 135 (385)
|.+...+.-..+.+.-......+.++.++|- +||-+++.++.++..++.++...+..
T Consensus 69 ~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s 148 (571)
T KOG1237|consen 69 HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPS 148 (571)
T ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcc
Confidence 4455666667777777778888999999996 58999999999998888665444211
Q ss_pred ---HHHHHHHHHHHHhhhhhhhhhhhHHhhhcCC---Cc---cchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHH
Q 016673 136 ---ISMLLLGRIFLGMGIGFGNQAVPLYLSEMAP---AK---IRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLS 206 (385)
Q Consensus 136 ---~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~ 206 (385)
...+..+.-+..+|.|+.-+...++-+|-++ ++ ++...+.++....+.|..++..+ ....-+..+|.+-
T Consensus 149 ~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~--~vyiq~~~~w~lg 226 (571)
T KOG1237|consen 149 KLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV--LVYIQDNVGWKLG 226 (571)
T ss_pred hHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH--HHhhhhcccceee
Confidence 1356666777888999999999999999998 22 22367788888888999888877 4444355689999
Q ss_pred HhhhHHHHHHHHHh
Q 016673 207 LGLATVPATLMFVG 220 (385)
Q Consensus 207 f~~~~~~~~~~~~~ 220 (385)
|.+..+...+++++
T Consensus 227 f~i~~~~~~lai~i 240 (571)
T KOG1237|consen 227 FGIPTVLNALAILI 240 (571)
T ss_pred ccHHHHHHHHHHHH
Confidence 98877766665443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.01 Score=52.01 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=51.8
Q ss_pred HHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHH
Q 016673 305 ILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVT 367 (385)
Q Consensus 305 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 367 (385)
...|.-...+++|++..+.+.++....+...+...+.|.+.||+|||+.-+...++..++.+.
T Consensus 53 QGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 53 QGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred hcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 333443445679999999999999999999999999999999999999888877777777654
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.18 Score=46.39 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhHhhhhhhhhh---hhcchHHHHHHHHHHHHHHHHHHhh------------------hhHHHHHHHHHHH
Q 016673 88 FTSSLYFAGLVSTFGASYVTR---SRGRRASIMVGSVSFFIGAILNACA------------------VHISMLLLGRIFL 146 (385)
Q Consensus 88 ~~s~~~l~~~~~~~~~g~l~d---~~Grr~~~~~~~~~~~i~~~~~~~~------------------~~~~~~~~~r~l~ 146 (385)
..-...++..+++.+.+.+.+ ++||++.+.++..+..++.++.-.. +++....+.-++.
T Consensus 284 ~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~ 363 (461)
T KOG3098|consen 284 YSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLL 363 (461)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHH
Confidence 333444555556666666664 5899999999999998888877552 1456777888999
Q ss_pred HhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHH
Q 016673 147 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLI 191 (385)
Q Consensus 147 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~ 191 (385)
|++-+......+.++.+.. +++|..+.++.-.-..++..++-..
T Consensus 364 G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 364 GFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred hhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999 6778888888888887777765544
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.27 Score=42.66 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=54.5
Q ss_pred HHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCC
Q 016673 93 YFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAP 166 (385)
Q Consensus 93 ~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~ 166 (385)
.+..+..+.+.+.+.+++|-|.++.++.......-. .-+-+.+..++-.-...|++.+..+..--+|+++...
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 344455566666899999999999888776655322 2234678889999999999999999887777776654
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.036 Score=46.74 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=65.8
Q ss_pred ccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHhhhc
Q 016673 299 LTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSNMIQ 375 (385)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 375 (385)
....+.+..|.|.+.+++|+|.++...+.....++..+| ++.|.+.|++|++..+.+|.+...++...+.......
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~ 90 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR 90 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 345677888999998889999999999988888888774 8889999999999999999999999999988876543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.005 Score=56.58 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=57.7
Q ss_pred HHHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHH
Q 016673 296 FQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVT 367 (385)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 367 (385)
+.....+..+...++.|.+++|+++.+.|.+....-+..+++.++.|.++||+.+||.++++..+..+....
T Consensus 21 ~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f 92 (618)
T KOG3762|consen 21 LFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF 92 (618)
T ss_pred eeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 334555677888899999999999999999999999999999999999999998766665555444444333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.02 Score=51.82 Aligned_cols=73 Identities=10% Similarity=0.007 Sum_probs=60.8
Q ss_pred HHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHhhhc
Q 016673 303 NSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSNMIQ 375 (385)
Q Consensus 303 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 375 (385)
+.+..-.+..-+.+|.++...|++.....++.+++++++|++.||++|++++.+|..+-.++.++-+...+++
T Consensus 50 ~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fw 122 (493)
T KOG1330|consen 50 YTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFW 122 (493)
T ss_pred hhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444899999999999999999999999999999999999999999999999998888875544
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.025 Score=47.24 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=38.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhccc-----cCCcchhHHHhhhHHHHHHHHHhhccc
Q 016673 168 KIRGAVNQLFQLTTCLGILVANLINYGTEK-----IHPWGWRLSLGLATVPATLMFVGGLFL 224 (385)
Q Consensus 168 ~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (385)
|+|+..+.....++++|.++.-.. .... ....+|++.+.+.+++.++.+++...+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIP--FLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhh--HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888899998877555 2222 111469999988888777666655443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.93 E-value=2.1 Score=38.79 Aligned_cols=93 Identities=19% Similarity=0.074 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHH
Q 016673 135 HISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPA 214 (385)
Q Consensus 135 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~ 214 (385)
.+...++.-.+.+.+.|..+.......++. |++.-+..++=.+.+..+.++.--.. .........+=...|.+..++.
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqavm~G~a~aG~l~Sl~~i~t-ka~~~~~~~sA~~yF~~s~~~~ 193 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAVMSGQALAGTLTSLLRILT-KAAFSDSRTSALIYFITSTVIL 193 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHHHhcchhHhHHHHHHHHHH-HHhcCCCCceeehhHHHHHHHH
Confidence 466677778888888888888777766665 44443322222222222222211111 1111111223334445555555
Q ss_pred HHHHHhhcccccchh
Q 016673 215 TLMFVGGLFLPETPN 229 (385)
Q Consensus 215 ~~~~~~~~~~~e~~~ 229 (385)
+++.++...+|+.|-
T Consensus 194 llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 194 LLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHhhcchH
Confidence 555555555666654
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.14 Score=46.47 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=70.1
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhc-chHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHhhhhhhh
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRG-RRASIMVGSVSFFIGAILNACA----VHISMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~G-rr~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~ 154 (385)
.+....|++......+..+++.+.|.+.||.. -|.+.++......+++...... ...+.+...-.+.|++..+..
T Consensus 298 Y~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~ 377 (480)
T KOG2563|consen 298 YEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYL 377 (480)
T ss_pred CCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCC
Confidence 35567899999999999999999999999986 4555565555555554322222 233455666777888888889
Q ss_pred hhhhHHhhhcC-CCccchhHHHHHHHHHH
Q 016673 155 QAVPLYLSEMA-PAKIRGAVNQLFQLTTC 182 (385)
Q Consensus 155 ~~~~~~i~~~~-~~~~r~~~~~~~~~~~~ 182 (385)
|...-+-.|.. |..| +.-.|+.+....
T Consensus 378 Pig~ElgvE~TyPv~E-~tSsGll~~~gq 405 (480)
T KOG2563|consen 378 PIGFELGVETTYPVAE-GTSSGLLNLSGQ 405 (480)
T ss_pred CcceeeeeeeccccCC-cccceeEEeehh
Confidence 98888877765 5455 444555544333
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.4 Score=40.80 Aligned_cols=109 Identities=8% Similarity=0.042 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhhhhcch--HHHHH--HHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHhhh
Q 016673 84 VLTLFTSSLYFAGLVSTFGASYVTRSRGRR--ASIMV--GSVSFFIGAILNACA---------VHISMLLLGRIFLGMGI 150 (385)
Q Consensus 84 ~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr--~~~~~--~~~~~~i~~~~~~~~---------~~~~~~~~~r~l~G~~~ 150 (385)
..-.....+.++-.+|..+..+.. .-++| ...+. .=+++.-..++|... ++-+..++..++.|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 445667778888888887554431 11222 32221 122233333344322 46677888899999999
Q ss_pred hhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 016673 151 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINY 193 (385)
Q Consensus 151 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 193 (385)
|-..+..+.+..+..++++|..+..+...+..+|..+|..++.
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988853
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.053 Score=40.78 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 329 ITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 329 ~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
...++.+++.+..+++.||++||+.+..+.....++.+.+...
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 48 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS 48 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh
Confidence 4567788899999999999999999988887777776665543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.61 E-value=3 Score=37.79 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=78.1
Q ss_pred chHHHHHHHH-HHHHHHhHhhhhhhhhhhhcchHHHHHHHH-HHHHHHHH-H------HhhhhHHHHHHHHHHHHhhhhh
Q 016673 82 NQVLTLFTSS-LYFAGLVSTFGASYVTRSRGRRASIMVGSV-SFFIGAIL-N------ACAVHISMLLLGRIFLGMGIGF 152 (385)
Q Consensus 82 ~~~~~~~~s~-~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~-~~~i~~~~-~------~~~~~~~~~~~~r~l~G~~~g~ 152 (385)
....-.+..+ +.+.-.+|.+.+.++-++= ||...+.... +..+-.+. | ..-.+-+++++...+.|+..|=
T Consensus 281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY 359 (406)
T KOG1479|consen 281 DWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY 359 (406)
T ss_pred hhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence 3444455556 8888888877776665543 3333322222 22222222 1 2245778888999999999999
Q ss_pred hhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 016673 153 GNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLIN 192 (385)
Q Consensus 153 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 192 (385)
.....+.+..+..|++++..+-.+.......|...|..++
T Consensus 360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9899999999999999999999999999999999888884
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=92.54 E-value=4.2 Score=37.13 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=75.1
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHH--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIM--VGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+...-|.+-++..+..+++.+..|++..++.+-.-+. ...++.+...++++..+|.|...++-++.+.......+.+.
T Consensus 283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~ 362 (412)
T PF01770_consen 283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS 362 (412)
T ss_pred CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788889999999999999999977777644433 34445556666778889999999999888888888777777
Q ss_pred HHhhhcCCCccchhHHHHHHH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQL 179 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~ 179 (385)
.-++....++.-+.++|+...
T Consensus 363 ~qIA~~l~~e~yaLVFGiNtf 383 (412)
T PF01770_consen 363 FQIAKNLSEERYALVFGINTF 383 (412)
T ss_pred HHHHHhccccceeeeeeeHHH
Confidence 777777766666666666544
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.11 Score=48.15 Aligned_cols=73 Identities=14% Similarity=0.249 Sum_probs=54.4
Q ss_pred HHHHH-HHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHH
Q 016673 138 MLLLG-RIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATV 212 (385)
Q Consensus 138 ~~~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~ 212 (385)
.++++ -++.|.+.-.......++-+|...+++++.+.+.++.....+..++|++....... .|.|+...+.+.
T Consensus 389 ~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~--~g~~~v~~~~~~ 462 (488)
T KOG2325|consen 389 LYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL--SGPRPVWIILLC 462 (488)
T ss_pred hheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh--cCccHHHHHHHH
Confidence 34444 35667777777778888999999999999999999999999999999995444443 355555444433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=89.16 E-value=1.4 Score=43.20 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=51.9
Q ss_pred HHhHHHHHH-hcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc-ccchhHHHHhhHHHHHHHHHHHHH
Q 016673 306 LFYAPVIFQ-SLGFGSGAALYSSVITGIALCIAALISMAFVDK-FGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 306 ~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
...+..|+. ..|++...+..+...+....-+..++++++.|+ +|+++.+..+.++..++..++++.
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~ 74 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG 74 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444 488988888888888777778888899999997 599999999999999988888764
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.64 E-value=0.35 Score=44.00 Aligned_cols=80 Identities=19% Similarity=0.140 Sum_probs=57.9
Q ss_pred HHHHHHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc----ccchhHHH-HhhHHHHHHHHH
Q 016673 293 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDK----FGRRAFFL-EAGTEMIIYMVT 367 (385)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~r~~~~-~~~~~~~~~~~~ 367 (385)
+....++ ++..-..|.|.|+++.|.+..-.+......-+.+++.+++.|..+|| +||||..+ .+.....+++++
T Consensus 40 ia~Gvqf-~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~L 118 (498)
T KOG0637|consen 40 IAAGVQF-GWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFL 118 (498)
T ss_pred HHHHHHH-HHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhh
Confidence 3444443 45667788899999999988887877777778888899999999997 57766654 445556666666
Q ss_pred HHHHhh
Q 016673 368 TLHSNM 373 (385)
Q Consensus 368 ~~~~~~ 373 (385)
+....+
T Consensus 119 ig~aaD 124 (498)
T KOG0637|consen 119 IGYAAD 124 (498)
T ss_pred hhhHhh
Confidence 655443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.23 E-value=9.5 Score=32.61 Aligned_cols=134 Identities=11% Similarity=0.085 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhhhhcch--HHHHHHHHHHHHHHHHHHh----hh---hHHHHHHHHHHHHhhhhhhhh
Q 016673 85 LTLFTSSLYFAGLVSTFGASYVTRSRGRR--ASIMVGSVSFFIGAILNAC----AV---HISMLLLGRIFLGMGIGFGNQ 155 (385)
Q Consensus 85 ~~~~~s~~~l~~~~~~~~~g~l~d~~Grr--~~~~~~~~~~~i~~~~~~~----~~---~~~~~~~~r~l~G~~~g~~~~ 155 (385)
.|.+.+.+.++..+|+-+..++..|-..| ..+.+......+...+... ++ +...-+++..+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 47888889999999999888888765544 3344444443333332222 11 222234455555667888999
Q ss_pred hhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHh
Q 016673 156 AVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG 220 (385)
Q Consensus 156 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 220 (385)
..+.+-.+..|++.|...+.++-.-.++=..++-.. .-......+-|..|-++.+...++.+.
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLyn--lh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN--LHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee--cccccCccccchhhhhhHHHHHHHHHH
Confidence 999999999999999999988776655433322111 001111245678888877766665443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.19 E-value=2.6 Score=36.60 Aligned_cols=110 Identities=13% Similarity=0.101 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHHh
Q 016673 83 QVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYL 161 (385)
Q Consensus 83 ~~~~~~~s~~~l~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i 161 (385)
+|.-|.+..|.+|..+..--.-..--+ .=--..+..-..++.+...+..+.++++...+.-+.-|+-.|..++-+.--+
T Consensus 288 sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i 367 (409)
T KOG3880|consen 288 SQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNI 367 (409)
T ss_pred hcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHH
Confidence 346688888887765533221111101 0001122334445555566677789999999999999998888888887778
Q ss_pred hhcCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 016673 162 SEMAPAKIRGAVNQLFQLTTCLGILVANLIN 192 (385)
Q Consensus 162 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 192 (385)
.+-.++++|..+++....+-++|..++..++
T Consensus 368 ~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 368 HKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred hhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 8878899999999999999999999998884
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=87.56 E-value=0.17 Score=48.22 Aligned_cols=79 Identities=13% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHccchHHHHHhHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHh
Q 016673 294 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSN 372 (385)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~ 372 (385)
..+.+..........++.+-++++++..++|.+.+..-++.++..++..++.+|-+|-|.+-.+.++++++.+++++-.
T Consensus 11 ~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPh 89 (539)
T PF03137_consen 11 LGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPH 89 (539)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccH
Confidence 3444444444445556666677999999999999999999999999999999998888899999999999999888643
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=87.02 E-value=0.19 Score=44.26 Aligned_cols=20 Identities=5% Similarity=-0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 016673 325 YSSVITGIALCIAALISMAF 344 (385)
Q Consensus 325 ~~~~~~~~~~~~~~~~~g~l 344 (385)
..+..+.++..+|+.+.++.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~ 205 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWP 205 (309)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHhcchhccee
Confidence 35667889999999988874
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=83.93 E-value=8.1 Score=30.02 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHH
Q 016673 324 LYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTL 369 (385)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 369 (385)
..-.++......+++++.+.+.+++|.|+.++++.+...+......
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~ 85 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF 85 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445566677788888899999999999999998888876665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.47 E-value=8.2 Score=33.00 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=45.0
Q ss_pred HHHHHhHHHHHHhcCCCC--chHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHH
Q 016673 303 NSILFYAPVIFQSLGFGS--GAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIY 364 (385)
Q Consensus 303 ~~~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 364 (385)
.......+.+..+.+.+. ...+.......+...++.+..|.+.||.|||+.+..+......+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 82 (338)
T COG0477 19 GLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLG 82 (338)
T ss_pred chHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHH
Confidence 334445666666665555 36788888888889998899999999999997777666543333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 385 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 8e-29 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 385 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.98 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.94 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.93 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.84 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.81 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.43 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.35 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.3 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.21 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.15 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.85 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.78 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=286.50 Aligned_cols=335 Identities=27% Similarity=0.462 Sum_probs=266.8
Q ss_pred hhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhh
Q 016673 22 ITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTF 101 (385)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 101 (385)
.+++.+.++++++++.+++|||.++++.+. |.+.++|..+.. ...+.+.++.+++.+++.+|..+|++
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~--~~~~~~~~~~~~----------~~~~~~~~~~g~~~s~~~~G~~iG~~ 73 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAPQN----------LSESAANSLLGFCVASALIGCIIGGA 73 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTH--HHHHHHHTGGGC----------CCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCC----------CCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888999999999999998763 566666542211 11124667889999999999999999
Q ss_pred hhhhhhhhhcchHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhh
Q 016673 102 GASYVTRSRGRRASIMVGSVSFFIGAILNA------------------CAVHISMLLLGRIFLGMGIGFGNQAVPLYLSE 163 (385)
Q Consensus 102 ~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~ 163 (385)
++|+++||+|||++++++.+++.+++++++ +++|+++++++|+++|++.|...+..+.+++|
T Consensus 74 ~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E 153 (491)
T 4gc0_A 74 LGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAE 153 (491)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 47899999999999999999999999999999
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccC------CcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCH
Q 016673 164 MAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH------PWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKL 237 (385)
Q Consensus 164 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~------~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 237 (385)
+.|+++|++..++.+.+...|.++++.++....... ...||+.+.+..++.++..+..+++||+|+|+..+++.
T Consensus 154 ~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~ 233 (491)
T 4gc0_A 154 LAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQ 233 (491)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCH
T ss_pred hCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCch
Confidence 999999999999999999999999998875544322 25789999999998888888889999999999999999
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcC
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLG 317 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 317 (385)
+++.+..++....+..+++..+..+..+.+++. ..... ....++...... ...+.+..+.+....|.|.+.+..+
T Consensus 234 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (491)
T 4gc0_A 234 EQAEGILRKIMGNTLATQAVQEIKHSLDHGRKT-GGRLL---MFGVGVIVIGVM-LSIFQQFVGINVVLYYAPEVFKTLG 308 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHH---HSCCTHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHSS
T ss_pred hHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhh-hhHHH---HhcccHHHHHHH-HHHHHHHhhhhHHHhcchHHHHhcC
Confidence 999988887765443333333222222222211 11111 122233444444 5677778888889999999998888
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHhh
Q 016673 318 FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSNM 373 (385)
Q Consensus 318 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~ 373 (385)
.+...........++..+++.++++++.||+|||+.++.+...+.++.+.++....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 88888888888889999999999999999999999999998888888877766543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-31 Score=242.68 Aligned_cols=291 Identities=13% Similarity=0.161 Sum_probs=220.1
Q ss_pred HHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhh
Q 016673 26 FLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASY 105 (385)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~ 105 (385)
.+.....+++..+..+++....++.. |.+.+++ +++..+.+++.+.+.++..+++++.|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~G~ 83 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILL--PQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGI 83 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444555556677777766655442 4444444 589999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHH
Q 016673 106 VTRSRGRRASIMVGSVSFFIGAILN---ACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTC 182 (385)
Q Consensus 106 l~d~~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 182 (385)
++||+|||++++++.++.+++.+++ ++++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..
T Consensus 84 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 163 (438)
T 3o7q_A 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999 8889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCcc------------------------hhHHHhhhHHHHHHHHHhhcc--cccchhHHHhcCC
Q 016673 183 LGILVANLINYGTEKIHPWG------------------------WRLSLGLATVPATLMFVGGLF--LPETPNSLVEQGK 236 (385)
Q Consensus 183 ~g~~i~~~~~~~~~~~~~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~ 236 (385)
+|..++|.++.......... ||+.|++.++..++..+..++ .||+++.. ++
T Consensus 164 ~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~ 240 (438)
T 3o7q_A 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS 240 (438)
T ss_dssp HHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc
Confidence 99999999965544112112 999998777766655444333 46654310 00
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHH-HHh
Q 016673 237 LDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI-FQS 315 (385)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 315 (385)
.++ +++.+.+++++++++..+... +..+...........+.|.+ +++
T Consensus 241 ~~~---------------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 288 (438)
T 3o7q_A 241 DAK---------------------------QGSFSASLSRLARIRHWRWAV-----LAQFCYVGAQTACWSYLIRYAVEE 288 (438)
T ss_dssp CSS---------------------------TTSHHHHHHHHTTCSHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc---------------------------ccchhhhHHHHHhChHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 000 000011233444443322222 23333444556677888888 887
Q ss_pred -cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 316 -LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 316 -~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
+|+++.+++.......++.+++.++.+++.||++||+.+..+.++..++.+++...
T Consensus 289 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 345 (438)
T 3o7q_A 289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA 345 (438)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc
Confidence 59999999999999999999999999999999999999998888877776665543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-31 Score=241.82 Aligned_cols=307 Identities=12% Similarity=0.051 Sum_probs=224.4
Q ss_pred chhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHh
Q 016673 21 RITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVST 100 (385)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~ 100 (385)
+.+++++......+++.+..+++...+++.. |.+ .+++ .+..+.+++.+++.++..+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~-~s~~~~g~~~~~~~~~~~~~~ 79 (451)
T 1pw4_A 21 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAM--PYL------------------VEQG-FSRGDLGFALSGISIAYGFSK 79 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH--HHT------------------TSST-TCSSCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH------------------HHHh-ccHhHHHHHHHHHHHHHHHHH
Confidence 3445566667777777788777776655442 222 2223 588899999999999999999
Q ss_pred hhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHH
Q 016673 101 FGASYVTRSRGRRASIMVGSVSFFIGAILNAC----AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQL 176 (385)
Q Consensus 101 ~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 176 (385)
+++|+++||+|||++++++.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++
T Consensus 80 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 159 (451)
T 1pw4_A 80 FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV 159 (451)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCcc-hhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCHHHHHHHHHHHhCCCchh
Q 016673 177 FQLTTCLGILVANLINYGTEKIHPWG-WRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKLDEARKVLEKVRGTANVD 254 (385)
Q Consensus 177 ~~~~~~~g~~i~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (385)
.+.+..+|.+++|.+++... +..+ ||+.|++.+++.++..+.. +++||+|+....+++.++ ..+.+
T Consensus 160 ~~~~~~~g~~~g~~~~~~l~--~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 227 (451)
T 1pw4_A 160 WNCAHNVGGGIPPLLFLLGM--AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------KNDYP 227 (451)
T ss_dssp HHHHHHHHHTSHHHHHHHHH--HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------CCC--
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh----------ccccc
Confidence 99999999999999975443 3346 9999999888877665444 567888754321111110 00000
Q ss_pred HHHHHHHHHHHHHHHhcCChhhh-hccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHH
Q 016673 255 AEFSDLIDASNAARAIKNPFRNL-FKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGI 332 (385)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~ 332 (385)
.+ .+ .+++++.+.++. .+...+.+...... +..+...........+.|.++++ +|+++.+++.......+
T Consensus 228 ~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 299 (451)
T 1pw4_A 228 DD----YN---EKAEQELTAKQIFMQYVLPNKLLWYIA-IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299 (451)
T ss_dssp ------------------CCTHHHHHHTSSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred cc----ch---hhhhcccccccchHHHHHcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 00 00 001111222222 11111222223233 34455555667788899999988 89999999999999999
Q ss_pred HHHHHHHHHHHhhccc--cchhHHHHhhHHHH-HHHHHH
Q 016673 333 ALCIAALISMAFVDKF--GRRAFFLEAGTEMI-IYMVTT 368 (385)
Q Consensus 333 ~~~~~~~~~g~l~d~~--~~r~~~~~~~~~~~-~~~~~~ 368 (385)
+.+++.++.+++.||+ +||+.+..+..+.. ++.+++
T Consensus 300 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (451)
T 1pw4_A 300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 338 (451)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99988877766655 444443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-27 Score=215.14 Aligned_cols=233 Identities=17% Similarity=0.232 Sum_probs=190.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++++.+++.+.+.++..+++++.|+++||+|||++++.+..+..++.++.++++|++.+++.|+++|++.+...+...
T Consensus 31 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~ 110 (375)
T 2gfp_A 31 NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMAR 110 (375)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHh-hcccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~ 237 (385)
+++.|++|+++|++++++.+....+|..++|.+++... +..+||+.|++.++..++..+. .+++||+++... ++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 185 (375)
T 2gfp_A 111 TLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD--TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA--PR- 185 (375)
T ss_dssp HHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC--CC-
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc--cc-
Confidence 99999999999999999999999999999999965443 4458999999988887777663 456788764210 00
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-c
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-L 316 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (385)
++.++++++.++++..+... +..+...........+.|.++++ .
T Consensus 186 ------------------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (375)
T 2gfp_A 186 ------------------------------TRLLTSYKTLFGNSGFNCYL-----LMLIGGLAGIAAFEACSGVLMGAVL 230 (375)
T ss_dssp ------------------------------CCTTTCSTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCSCSSHHHH
T ss_pred ------------------------------ccHHHHHHHHhcCcchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01123344555443322222 23334444556677778888777 8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 016673 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 351 (385)
Q Consensus 317 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r 351 (385)
|.++.+.+.......++.+++.++.+++.||.+++
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999873
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-25 Score=205.07 Aligned_cols=290 Identities=13% Similarity=0.046 Sum_probs=190.6
Q ss_pred cccCCchHHHHHHHHHHHHHHhHhhhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhh
Q 016673 77 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 155 (385)
Q Consensus 77 ~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 155 (385)
+++.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 347899999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhcCCCcc--chhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccc-ccch----
Q 016673 156 AVPLYLSEMAPAKI--RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETP---- 228 (385)
Q Consensus 156 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~---- 228 (385)
...+++.|++|+++ |+.++++.+...++|..++|.+++... +..+||+.|++.++..++..+..++. |+..
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ--EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY 205 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 99999999999988 777888899999999999999965544 34589999999877666655444322 2110
Q ss_pred hHHHhcCCHHHHHHHHHH----------------HhCCCchhHHHHHHHHH------HHHHHHhcCChh-hhhccCCcch
Q 016673 229 NSLVEQGKLDEARKVLEK----------------VRGTANVDAEFSDLIDA------SNAARAIKNPFR-NLFKKKNRPQ 285 (385)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~ 285 (385)
+...++.+.++..+..+. ..+..+.+......... ....+..+.... ...+++. ..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 284 (491)
T 4aps_A 206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV-VS 284 (491)
T ss_dssp SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C-TT
T ss_pred cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH-HH
Confidence 000011122232222221 11111111111000000 000000000000 0011111 11
Q ss_pred HHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH-----HhhH
Q 016673 286 LVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL-----EAGT 359 (385)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~-----~~~~ 359 (385)
.... . ...+.....+.....+.|.+.++ .+.+..+.+.......+..+++.++.+++.||++||+... .+..
T Consensus 285 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 285 YIPL-F-IAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp HHHH-H-HHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHH
T ss_pred HHHH-H-HHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 1111 1 12222233334445566777776 6777677788888889999999999999999999886544 6666
Q ss_pred HHHHHHHHHHHH
Q 016673 360 EMIIYMVTTLHS 371 (385)
Q Consensus 360 ~~~~~~~~~~~~ 371 (385)
+.+++.+++...
T Consensus 363 ~~~~~~~~~~~~ 374 (491)
T 4aps_A 363 FAGLSFLLMAIP 374 (491)
T ss_dssp HHHHHHTTTHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-20 Score=173.18 Aligned_cols=141 Identities=14% Similarity=0.149 Sum_probs=126.4
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhh-cchHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhhh
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
.+..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.+++.+++++++ |++.++++|+++|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 7899999999999999999999999999999 999999999999999999999998 99999999999999999999999
Q ss_pred hHHhhhcCCCccchhHHHH---HHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhc
Q 016673 158 PLYLSEMAPAKIRGAVNQL---FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL 222 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (385)
.+++.|++|+++|+++.+. .+...++|..++|.+++.. .+..+||+.|++.++..++..+..+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l--~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL--LKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH--HHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 8899999999999985433 3446899999988887766655443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-20 Score=170.65 Aligned_cols=258 Identities=12% Similarity=0.065 Sum_probs=157.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHH---HHHhhhhH-HHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAI---LNACAVHI-SMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~---~~~~~~~~-~~~~~~r~l~G~~~g~~~ 154 (385)
+.++.+.|++.+.+.++..++++++|+++||+|||++++++..+..++.. ...+.+.. ..+...+++.|++.+...
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 118 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999998887765322 12233222 123455666666665555
Q ss_pred hhhhHHhhhcCCC--ccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHH
Q 016673 155 QAVPLYLSEMAPA--KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 232 (385)
Q Consensus 155 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~ 232 (385)
+.....+.++.++ ++|+...+.......+|..++|.+++.... .+||+.|++.++..++..+..++.+|+++...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T 2cfq_A 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---INNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195 (417)
T ss_dssp HTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH---HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSS
T ss_pred hhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHHHHHHcCccccccc
Confidence 4444444444433 455767777777788888899988655443 36999999887766555555555444331100
Q ss_pred hcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHH
Q 016673 233 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 312 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (385)
++++.++ .+.++. ...+++++++++..+...+ ..+.....+.....+.|.+
T Consensus 196 ~~~~~~~--------~~~~~~----------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2cfq_A 196 TVANAVG--------ANHSAF----------------SLKLALELFRQPKLWFLSL-----YVIGVSCTYDVFDQQFANF 246 (417)
T ss_dssp CSSSSSS--------SCCCCC----------------CHHHHHHHTTCHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc--------cccccc----------------cHHHHHHHhcCCchhhHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 0000000 000000 0001223333322222111 1122222233344456777
Q ss_pred HHh-cC---CCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHH
Q 016673 313 FQS-LG---FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTT 368 (385)
Q Consensus 313 ~~~-~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~ 368 (385)
+.+ ++ .+....+.......++.+++.++.++++||+|||+.+..+..+.++..+++
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 665 33 223445677777788889999999999999999998888777776665444
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-12 Score=119.42 Aligned_cols=144 Identities=18% Similarity=0.150 Sum_probs=123.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh--cchHHHHHHHHHHH-HHHHHHHhh--hhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR--GRRASIMVGSVSFF-IGAILNACA--VHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~--Grr~~~~~~~~~~~-i~~~~~~~~--~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++.+..
T Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 363 (451)
T 1pw4_A 284 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP 363 (451)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhch
Confidence 57899999999999999999999999999999 99999988887776 666666665 37788888899999999999
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHH-HHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccc
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 224 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (385)
.+....++.|.+|+++|+++.++.+....+ |..++|.+.+... +..||+..|++.++..++..+..+++
T Consensus 364 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 364 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV--DFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 898999999999999999999999999999 9999999955444 34579999998888777766655443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-12 Score=117.59 Aligned_cols=146 Identities=10% Similarity=0.084 Sum_probs=120.1
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHH
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLY 160 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 160 (385)
+....++..+...++..++.++.|+++||+|||+++..+..+.+++.+..++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888888999999999999999999999999998888888888888888888888888888877777778899
Q ss_pred hhhcCCCccchhHHHH-HHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccch
Q 016673 161 LSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETP 228 (385)
Q Consensus 161 i~~~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~ 228 (385)
+.|.+|++.|+.+.+. .+....+|..++|.+++... +..|++..|.+.++..++..+.. ...||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~--~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY--ESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH--HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 48888899999999965443 34578888888888777766554 4456554
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=112.69 Aligned_cols=141 Identities=6% Similarity=-0.039 Sum_probs=114.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++..+.++.+.++.. ++.|++.+...+...
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIF 369 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999988888887665544 888999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcc-hhHHHhhhHHHHHHHHHhhccc
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG-WRLSLGLATVPATLMFVGGLFL 224 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~ 224 (385)
++..|.+|++ |+.+.++.. ...+|..++|.+.+... +..| ++..|++.++..++..+..++.
T Consensus 370 ~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 370 SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVS--DAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHH--HHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHH--HHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999866 888888877 55689999999855444 3345 8888887655554444433333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-11 Score=112.08 Aligned_cols=140 Identities=10% Similarity=-0.019 Sum_probs=110.6
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHH-----HHHHHHHHHHHHHHhhh---------hHHHHHHHHHHH
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIM-----VGSVSFFIGAILNACAV---------HISMLLLGRIFL 146 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~-----~~~~~~~i~~~~~~~~~---------~~~~~~~~r~l~ 146 (385)
+..+.++..+...++..++.++.|++.||+|||+... .+..+.+++.++..... +.+.+.+.-++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (491)
T 4aps_A 317 SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALV 396 (491)
T ss_dssp SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHH
T ss_pred CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Confidence 4355677778888888999999999999999987655 77777777777666643 677888889999
Q ss_pred HhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc
Q 016673 147 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 223 (385)
Q Consensus 147 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (385)
|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+... +.++.+.|.+.+..+++..+..++
T Consensus 397 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 397 ILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN---AKSEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG---GSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999954333 235667777777776666555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.5e-10 Score=103.35 Aligned_cols=148 Identities=19% Similarity=0.120 Sum_probs=103.4
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHH--HHHhhhhhh
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV----HISMLLLGRI--FLGMGIGFG 153 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~r~--l~G~~~g~~ 153 (385)
.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +.+..++.-+ ..+++ ...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 387 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA-MSW 387 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-TTT
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-hHH
Confidence 3555566667777888899999999999999999999999888888777665421 1122222222 22222 233
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccc----cCCcchhHHHhhhHHHHHHHHHhh-cccccch
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK----IHPWGWRLSLGLATVPATLMFVGG-LFLPETP 228 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~----~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~ 228 (385)
.+....+.+|.+|.+.|++++++......+|..+++.+...... ....++.+.|++.++++++..+.. +++||+.
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 46677899999999999999999999999998888766332221 112345567777777777766554 6689984
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.9e-10 Score=99.39 Aligned_cols=127 Identities=12% Similarity=0.050 Sum_probs=96.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHH-HHHHHH--HHHh--hhhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVS-FFIGAI--LNAC--AVHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~-~~i~~~--~~~~--~~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.++.+.+++.+...++..++.++.+++.||+|+|. ..+... ...+.. .... .++.+.+++..++.|++.+..
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 308 (375)
T 2gfp_A 231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGML 308 (375)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Confidence 357788999999999999999999999999999833 333322 222222 2222 247777888899999999999
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhh
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLA 210 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~ 210 (385)
.+...+++.|..| ++|+++.++.+....+|..++|.+.+.. .+..+|+..+.+.
T Consensus 309 ~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l--~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 309 FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML--PQTGQGSLGLLMT 362 (375)
T ss_dssp SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH--hcCCcccHHHHHH
Confidence 9999999999998 8999999999999999999998884333 2333566666553
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-08 Score=94.64 Aligned_cols=140 Identities=13% Similarity=0.041 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhh----hhhcc----hHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHH
Q 016673 84 VLTLFTSSLYFAGLVSTFGASYVT----RSRGR----RASIMVGSVSFFIGAILNACA---------VHISMLLLGRIFL 146 (385)
Q Consensus 84 ~~~~~~s~~~l~~~~~~~~~g~l~----d~~Gr----r~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~r~l~ 146 (385)
..+++.+...++..++.++.+++. ||.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 356666677777777888877765 55543 356777888888887777664 3677788889999
Q ss_pred HhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcch---------hHHHhhhHHHHHHH
Q 016673 147 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGW---------RLSLGLATVPATLM 217 (385)
Q Consensus 147 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~w---------r~~f~~~~~~~~~~ 217 (385)
|++.+...+....++.|..|+++|++++++.+....+|..++|.+.+........+| +..|++.+...++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999655443211134 33366666666665
Q ss_pred HHhhcc
Q 016673 218 FVGGLF 223 (385)
Q Consensus 218 ~~~~~~ 223 (385)
.+..++
T Consensus 496 ~~~~~~ 501 (524)
T 2xut_A 496 AIVFAL 501 (524)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 385 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.79 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.47 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.23 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=7.4e-31 Score=239.89 Aligned_cols=303 Identities=13% Similarity=0.025 Sum_probs=214.9
Q ss_pred cccccchhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHH
Q 016673 16 HLYEYRITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFA 95 (385)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 95 (385)
++.+++.++.+|.....++++.+..+++...++.+ .|.+. +.++|.++.|++.+++.++
T Consensus 13 ~~~~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~----------~p~~~-----------~~g~s~~~~g~~~s~~~~~ 71 (447)
T d1pw4a_ 13 AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALA----------MPYLV-----------EQGFSRGDLGFALSGISIA 71 (447)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH----------HHHTT-----------SSTTCSSCHHHHHHHHHHH
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH-----------HhCcCHHHHHHHHHHHHHH
Confidence 33444555667877777788878777777666544 22221 1258999999999999999
Q ss_pred HHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccch
Q 016673 96 GLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA----VHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRG 171 (385)
Q Consensus 96 ~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 171 (385)
+.++++++|+++||+|||+++.++.++.+++.++++++ ++++.++++|++.|++.|...+...+++.|++|+++|+
T Consensus 72 ~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~ 151 (447)
T d1pw4a_ 72 YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG 151 (447)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHH
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999998876 47889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCHHHHHHHHHHHhCC
Q 016673 172 AVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKLDEARKVLEKVRGT 250 (385)
Q Consensus 172 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 250 (385)
+++++.+.+..+|..+++.++...... ..+||+.|++.+.+.++..+.. .+.+|+|+........+..
T Consensus 152 ~~~~~~~~~~~~g~~i~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 220 (447)
T d1pw4a_ 152 GIVSVWNCAHNVGGGIPPLLFLLGMAW-FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK---------- 220 (447)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHH-TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------
T ss_pred ccccccccccchhhhhhhhhhhhHhhh-hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh----------
Confidence 999999999999999999886544332 2379999998888777665554 4466665432111111100
Q ss_pred CchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHH
Q 016673 251 ANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVI 329 (385)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~ 329 (385)
.+.. ++ ..+..++.....+...+.....+...... ...++..........+.|.++++ .+++..+.+.....
T Consensus 221 ~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (447)
T d1pw4a_ 221 NDYP---DD---YNEKAEQELTAKQIFMQYVLPNKLLWYIA-IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFL 293 (447)
T ss_dssp CC-------------------CCTHHHHHHTSSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHH
T ss_pred hhcc---cc---hhhccccccchhhHHHHHHHcCchHHHHH-HHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhc
Confidence 0000 00 00000111111111122222223333333 34444555566777788888877 88999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccchhHHHHh
Q 016673 330 TGIALCIAALISMAFVDKFGRRAFFLEA 357 (385)
Q Consensus 330 ~~~~~~~~~~~~g~l~d~~~~r~~~~~~ 357 (385)
..+..+++.++.+++.||++|++.....
T Consensus 294 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 321 (447)
T d1pw4a_ 294 YEYAGIPGTLLCGWMSDKVFRGNRGATG 321 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred chhhhhhhhhhhhhhhhhcccccccccc
Confidence 9999999999999999999876544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=9.9e-20 Score=162.98 Aligned_cols=257 Identities=13% Similarity=0.080 Sum_probs=158.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISML----LLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~r~l~G~~~g~~~ 154 (385)
++|++++|++.+++.++..++++++|+++||+|||++++++..+..++........+.... .+.+.+.+.+.+...
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccc
Confidence 5899999999999999999999999999999999999999999999999888887655443 445555555555555
Q ss_pred hhhhHHhhhcCCC--ccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHH-HHHhhcccccchhHH
Q 016673 155 QAVPLYLSEMAPA--KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATL-MFVGGLFLPETPNSL 231 (385)
Q Consensus 155 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~~~~~ 231 (385)
........+..++ +++....+........+..+++.+++..... +|+..+........+ ..+..+..+|+++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T d1pv7a_ 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195 (417)
T ss_dssp TTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSS
T ss_pred cchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc---cccccccchhhHHHHHHHHHHHHhcccccch
Confidence 5544444443332 3455667777788888888888886554432 466555555444444 444445566665311
Q ss_pred HhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChh---hhhccCCcchHHHHHhHHHHHHHccchHHHHHh
Q 016673 232 VEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFR---NLFKKKNRPQLVIGALGIPAFQQLTGMNSILFY 308 (385)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (385)
++.++. ++++.+.... +..+.+..+....... ............
T Consensus 196 ---~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 242 (417)
T d1pv7a_ 196 ---TVANAV-------------------------GANHSAFSLKLALELFRQPKLWFLSLYVI-----GVSCTYDVFDQQ 242 (417)
T ss_dssp ---CSSHHH-------------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred ---hhhhhh-------------------------hhhcccccccccccccccccccchhhhhH-----HHHHHHHhhhcc
Confidence 111100 0000011111 1111111111111111 111112222222
Q ss_pred HHHHHHh----cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 309 APVIFQS----LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 309 ~~~~~~~----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
.+.+... .+.+....+.......++..++..+.+++.||.++|+.+..+..+.+++.+++...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 309 (417)
T d1pv7a_ 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA 309 (417)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc
Confidence 2222222 22334456677778888899999999999999999999998888888877776654
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=7.2e-14 Score=124.17 Aligned_cols=145 Identities=9% Similarity=0.066 Sum_probs=125.4
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhH
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPL 159 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 159 (385)
.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.+...+.++.+.+++..++.|++.+...+...+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 335 (417)
T d1pv7a_ 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 35667788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCccchhHHHHH-HHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-ccccc
Q 016673 160 YLSEMAPAKIRGAVNQLF-QLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPE 226 (385)
Q Consensus 160 ~i~~~~~~~~r~~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 226 (385)
++.|.+|+++|+++.+.. +....+|..++|.+++... +..||+..|++.+++.++..+.. +.+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY--ESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999975 5667899999999854443 44689999998888777665554 34443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=3e-11 Score=108.47 Aligned_cols=143 Identities=17% Similarity=0.119 Sum_probs=109.2
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHH---HHHh--hhhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAI---LNAC--AVHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~---~~~~--~~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.+..+.++..+...++..++.++.|++.||++||+..........+... .... ..+.+...++-++.|++.+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 360 (447)
T d1pw4a_ 281 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP 360 (447)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred ccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999987654443333322222 2222 457778888888999998888
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHH-HHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 223 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (385)
.+....+..|.+|+++|+++.|+.+....+ |.+++|.+.+.. .+..||+..|++.+...++..++..+
T Consensus 361 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 361 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT--VDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998887666 567788874433 34568999888877766666555433
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