Citrus Sinensis ID: 016683

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVLCHFDAIFLLILLQMEGSF
Secondary Structure (PSIPRED)
ccccccccHHccccccHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcHHHHHHHcHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHcccHHHHHHHHHccccHHHccccccEcccccccccHHHHHHHHccHHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHcHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHccccHHHHccccccHHHHHHHcccccHHHHHHHHccccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELkldvdtqdedgetpllHAARQGHTETAKYLfehganptipsnlgatalhhsaGIGNIELLTYLLSkgaevdsesdagtpliwaaGHGQQEAVKVLLEhhanpnaetedniTPLLSAVAAGSLTCLDLLIQAGANanivaggatplhiaadIGSTEIIKCLLkagadpnvtdedgqkPIQVAAARGNREAVEILFpltsedpsipkwtVDGILEYmqsesgkqlEETRnlkennapkdkapmkelpevrPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVLCHFDAIFLLILLQMEGSF
Flexible Loop (DISEMBL)
MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAlhfaaregktDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGadpnvtdedgQKPIQVAAARGNREAVEIlfpltsedpsipKWTVDGILEYMQSESGKQleetrnlkennapkdkapmkelpevrpEIKKKAAeakargdeafkqKDYLMAVDAYTQVCYSSVLCHFDAIFLLILLQMEGSF
Low Complexity Region (SEG)
MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQagananivaggaTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIkkkaaeakaRGDEAFKQKDYLMAVDAYTQVCYSSVLCHFDAIFLLILLQMEGSF
Disordered region (IsUnstruct)
*********AVRERVQQFLNAACTGNLDLLKKIAKQLD********TVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVD******************TETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV*****AGTPLIWAAGHGQQEAVKVLLEHHA******EDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGA********************NREAVEILFPLTSEDPSIPKWTVDGILEY******************************************************KDYLMAVDAYTQVCYSSVLCHFDAIFLLILLQ*****
Disordered Region (DISOPRED)
**PDASH*LAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVLCHFDAIFLLILLQMEGS*
Disordered Region (DISEMBL)
MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIK**********DEAFKQKDYLMAVDAYTQVCYSSVLCHFDAIFLLILLQMEGSF
Disordered Region (DISPRO)
*****SHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVLCHFDAIFLLILLQMEG**
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVLCHFDAIFLLILLQMEGSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.632	0.129	0.368	8e-31
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.632	0.130	0.360	3e-29
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.622	0.202	0.316	2e-26
Q54KA7	986	Ankyrin repeat, PH and SE	yes	no	0.609	0.237	0.330	6e-26
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.614	0.120	0.340	2e-24
Q7T163	1672	Kinase D-interacting subs	no	no	0.583	0.133	0.337	4e-24
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.614	0.053	0.336	8e-24
Q08DV6	525	Ankyrin repeat and SOCS b	no	no	0.632	0.462	0.346	1e-23
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.580	0.056	0.340	2e-23
Q9H9B1	1298	Histone-lysine N-methyltr	no	no	0.533	0.157	0.350	5e-23

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  134 bits (338), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/255 (36%), Positives = 138/255 (54%), Gaps = 12/255 (4%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+  K
Sbjct: 411 ASFMGHLPIVKNLLQ------RGASPNVSNVK---VETPLHMAARAGHTEVAKYLLQN-K 460

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
             V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E + 
Sbjct: 461 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 520

Query: 141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            LL K A     +  G TPL  AA +G+    ++LLE  A+PNA  ++ +TPL  AV   
Sbjct: 521 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 580

Query: 200 SLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
           +L  + LL+  G + +  A  G TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct: 581 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 640

Query: 259 VAAARGNREAVEILF 273
           +AA  G+ E V +L 
Sbjct: 641 LAAQEGHAEMVALLL 655

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.
Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/255 (36%), Positives = 135/255 (52%), Gaps = 12/255 (4%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+   
Sbjct: 407 ASFMGHLPIVKNLLQ------RGASPNVSNVKVET---PLHMAARAGHTEVAKYLLQNKA 457

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
                  +D +TPL  AAR GHT   K L E+GA+P + +  G T LH +A  G+++   
Sbjct: 458 KANAKAKDD-QTPLHCAARIGHTGMVKLLLENGASPNLATTAGHTPLHTAAREGHVDTAL 516

Query: 141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            LL K A     +  G TPL  AA +G+    ++LLEH A+PNA  ++ +TPL  AV   
Sbjct: 517 ALLEKEASQACMTKKGFTPLHVAAKYGKVRLAELLLEHDAHPNAAGKNGLTPLHVAVHHN 576

Query: 200 SLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
           +L  + LL+  G + +  A  G TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct: 577 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLH 636

Query: 259 VAAARGNREAVEILF 273
           +AA  G+ E V +L 
Sbjct: 637 LAAQEGHTEMVALLL 651

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 138/253 (54%), Gaps = 14/253 (5%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           AA  GNLDL K +AK   D          + K  N    LH+A + G   + K+L+E  +
Sbjct: 645 AAKNGNLDLAKLLAKNGAD---------VNAKTDNGETVLHYAVKSGNLHLVKWLIEN-Q 694

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
            ++  + ++GET L +A    +++    L  +GA+    ++ G TALH++   GN++L++
Sbjct: 695 ANIHAKTDNGETVLHYAVSFNNSDLVYLLIAYGADVNAKTDNGLTALHYAVYDGNLDLVS 754

Query: 141 YLLSKGAEVDSESDAGTPLIWAA-GHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            L+S GA+V++++++G  ++++A  +G  + V +L+ + A+ NA+T++  T L  AV +G
Sbjct: 755 LLISHGADVNAKTNSGETILYSAVDYGSPDLVYLLIAYGADVNAKTDNGETVLHYAVESG 814

Query: 200 SLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
           +L  + LLI  GAN N      T LH AA  G+  ++  L+K  AD +     G+  +  
Sbjct: 815 NLDLVSLLIHNGANVN---NAKTILHFAAKSGNLNLVNWLIKNKADIHAKTNSGETILHF 871

Query: 260 AAARGNREAVEIL 272
           AA  GN   V  L
Sbjct: 872 AAESGNLNLVNWL 884

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score =  118 bits (296), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 128/239 (53%), Gaps = 5/239 (2%)

Query: 46  KTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTET 105
           K  A+IKD+     L +A+  G  +  K L+E+  +DV+T+D+   TPL  A+     E 
Sbjct: 92  KANANIKDSAGNTPLQWASSRGHLECIKLLVEKGGVDVNTKDDKNGTPLHKASLFASAEC 151

Query: 106 AKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAG 164
             YL    A+P   +  G T LHH++  GN + +  L+   ++V++ ++D  TPL  A+ 
Sbjct: 152 VLYLLNGKADPRAVTTNGETPLHHASAGGNPQCVELLIKADSKVNAVDNDCITPLHQASF 211

Query: 165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATP 223
            G    V +LL+  A  +      I+PL +A +AG + C++ L++ G N N V   G TP
Sbjct: 212 SGHSSCVSLLLKKGAKVDPRDIHGISPLHNAASAGYVDCVEQLVRNGENINCVDIEGVTP 271

Query: 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSI 282
           LH     G+ ++ K L++ GA  N+ DE G+ P+  AA  G++E  E L  L   DP++
Sbjct: 272 LHHTCFNGNLQLTKRLIELGAKINMVDEMGETPLHKAAFNGHKEVCEYLLYL---DPTM 327

Dictyostelium discoideum (taxid: 44689)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 122/244 (50%), Gaps = 8/244 (3%)

Query: 32  KIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE 91
           K+AK L D+     K   + K  N    LH A ++ +  V + LL+     +    E G 
Sbjct: 364 KVAKVLLDK-----KASPNAKALNGFTPLHIACKKNRIRVMELLLKH-GASIQAVTESGL 417

Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
           TP+  AA  GH      L  HGA+P   +  G TALH +A  G  E++ YL+  GA+V++
Sbjct: 418 TPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEA 477

Query: 152 ES-DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210
           ++ D  TPL  +A  G+ + V+ LL+  A+PNA T    TPL  A   G       L+  
Sbjct: 478 KAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDH 537

Query: 211 GANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
           GA+ +I    G TPLH+AA  G  E+   LL+  A P+   + G  P+ VAA   N++  
Sbjct: 538 GASLSITTKKGFTPLHVAAKYGKLEVASLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVA 597

Query: 270 EILF 273
            +L 
Sbjct: 598 LLLL 601

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q7T163|KDIS_DANRE Kinase D-interacting substrate of 220 kDa OS=Danio rerio GN=kidins220 PE=2 SV=2

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
            D +  N +  L  A+ +G  ++ + L+     +V+  D D  + L+ AA++GH E  K 
Sbjct: 31  VDGRSDNGQTPLMLASEQGSLEIVQELIRR-GANVNLDDVDCWSALISAAKEGHVEVVKE 89

Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGT--PLIWAAGHG 166
           L E+ A        G TAL  ++  G +E+ T LL  GA  ++     +  P+IWAAG G
Sbjct: 90  LLENSAYIEHRDMGGWTALTWASYKGRVEVATVLLENGANPNTTGQQYSVYPIIWAAGRG 149

Query: 167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLH 225
             E VK+LLEH A  N   +   TPL+ A   G   C+  L++ GA+ +   A   T L 
Sbjct: 150 HAEIVKLLLEHGAKVNCSDKYGTTPLIWAARKGHYDCVMHLLENGADVDQEGANSMTALI 209

Query: 226 IAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           +A   G TE++K LLK   + N+TD+DG   + +AA  G  E V+ L 
Sbjct: 210 VAVKGGYTEVVKELLKRNPNVNMTDKDGNTALMIAAKEGYTEIVQDLL 257

Downstream target for both neurotrophin and ephrin receptors.

Danio rerio (taxid: 7955)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score =  111 bits (278), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 122/244 (50%), Gaps = 8/244 (3%)

Query: 32  KIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE 91
           K+AK L D+     K   + K  N    LH A ++ +  V + LL+     +    E G 
Sbjct: 381 KVAKVLLDK-----KANPNAKALNGFTPLHIACKKNRIKVMELLLKH-GASIQAVTESGL 434

Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
           TP+  AA  GH      L  HGA+P   +  G TALH +A  G  E++ YL+  GA+V++
Sbjct: 435 TPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEA 494

Query: 152 ES-DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210
           ++ D  TPL  +A  G+ + V+ LL+  A+PNA T    TPL  +   G       L+  
Sbjct: 495 KAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDH 554

Query: 211 GANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
           GA+ +I    G TPLH+AA  G  E+   LL+  A P+   + G  P+ VAA   N++  
Sbjct: 555 GASLSITTKKGFTPLHVAAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVA 614

Query: 270 EILF 273
            +L 
Sbjct: 615 LLLL 618

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q08DV6|ASB3_BOVIN Ankyrin repeat and SOCS box protein 3 OS=Bos taurus GN=ASB3 PE=2 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 137/271 (50%), Gaps = 28/271 (10%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL--HFAAREGKTDVCKYLLEE 78
           AA  GN+ +L+K+ K      KG S  VAD      RG +  H A+     +  + L+  
Sbjct: 17  AAREGNVKVLRKLLK------KGRSIDVAD-----NRGWMPIHEASYHNSVECLRMLIRA 65

Query: 79  LKLD--VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI 136
              +  + T+  +G   L  AA QGH +  + L E GA+P   +    T L  +   G I
Sbjct: 66  DSSENYIKTKTFEGFCALHLAASQGHWKIIQILLEAGADPNATTLEETTPLFLAVENGQI 125

Query: 137 ELLTYLLSKGAEVD-SESDAGTPLIWAAGH-----GQQEAVKVLLEHHANPNAETEDNIT 190
           ++L  LL  GA V+ S S  G    W A H     G  E +K+LL+  AN   + +  IT
Sbjct: 126 DVLRLLLRYGANVNGSHSMCG----WNALHQASFQGNAEIIKLLLKKGANKECQDDFGIT 181

Query: 191 PLLSAVAAGSLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNV- 248
           PL  A   G L  L +LI +GA+ N  A   ATPL IAA  G TE ++ LL +GADP++ 
Sbjct: 182 PLFVAAQYGKLESLSILISSGADVNCQALDKATPLFIAAQEGHTECVELLLSSGADPDLY 241

Query: 249 -TDEDGQKPIQVAAARGNREAVEILFPLTSE 278
             +++ Q PI  AA  G+ + +++L PLT+ 
Sbjct: 242 CNEDNWQLPIHAAAQMGHTKILDLLIPLTNR 272

Probable substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Recognizes TNFRSF1B.

Bos taurus (taxid: 9913)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 3/226 (1%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D+ +     ALH AAR G+ +V + LL    L VD +  + +TPL  A+R G TE  + L
Sbjct: 458 DVTNIRGETALHMAARAGQVEVVRCLLRNGAL-VDARAREEQTPLHIASRLGKTEIVQLL 516

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168
            +H A+P   +  G T LH SA  G +++ + LL  GA     +  G TPL  AA +G  
Sbjct: 517 LQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSL 576

Query: 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA-GGATPLHIA 227
           +  K+LL+  A  ++  ++ +TPL  A    +     LL++ GA+ +  A  G TPLHIA
Sbjct: 577 DVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALLLLEKGASPHATAKNGYTPLHIA 636

Query: 228 ADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           A     +I   LL  GA+ N+  + G  P+ +A+  G+ + V +L 
Sbjct: 637 AKKNQMQIASTLLNYGAETNIVTKQGVTPLHLASQEGHTDMVTLLL 682

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q9H9B1|EHMT1_HUMAN Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens GN=EHMT1 PE=1 SV=4

 Score =  109 bits (272), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 116/211 (54%), Gaps = 6/211 (2%)

Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
           NKR  LH AA  G  D+C ++L +   ++DT  ED  TPL+ AA   H E  KYL + GA
Sbjct: 772 NKRSPLHAAAEAGHVDIC-HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 830

Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKG-AEVDSESDAG-TPLIWAAGHGQQEAVK 172
                   G+T LH +A  G+ E++ YLLS G  +V+ + D G TP+IWA  +   + VK
Sbjct: 831 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 890

Query: 173 VLLEHHANPN-AETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADI 230
           +LL   ++ N  + E+NI  L  A  +G +   ++L+ A  + + V   G +PLHIAA  
Sbjct: 891 LLLSKGSDINIRDNEENIC-LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE 949

Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
              + +   L   +D  + +++G+ P+Q A+
Sbjct: 950 NRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 980

Histone methyltransferase that specifically mono- and dimethylates 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin. H3K9me represents a specific tag for epigenetic transcriptional repression by recruiting HP1 proteins to methylated histones. Also weakly methylates 'Lys-27' of histone H3 (H3K27me). Also required for DNA methylation, the histone methyltransferase activity is not required for DNA methylation, suggesting that these 2 activities function independently. Probably targeted to histone H3 by different DNA-binding proteins like E2F6, MGA, MAX and/or DP1. During G0 phase, it probably contributes to silencing of MYC- and E2F-responsive genes, suggesting a role in G0/G1 transition in cell cycle. In addition to the histone methyltransferase activity, also methylates non-histone proteins: mediates dimethylation of 'Lys-373' of p53/TP53.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
225453006	458	PREDICTED: ankyrin-1 [Vitis vinifera] gi	0.929	0.779	0.793	1e-157
224130626	474	predicted protein [Populus trichocarpa]	0.932	0.755	0.750	1e-153
224125660	451	predicted protein [Populus trichocarpa]	0.895	0.762	0.75	1e-150
255580917	463	ankyrin repeat-containing protein, putat	0.929	0.771	0.771	1e-149
449483017	458	PREDICTED: ankyrin-1-like [Cucumis sativ	0.929	0.779	0.760	1e-145
363807266	460	uncharacterized protein LOC100793914 [Gl	0.932	0.778	0.730	1e-144
356504107	678	PREDICTED: uncharacterized protein LOC10	0.932	0.528	0.719	1e-143
147788021	433	hypothetical protein VITISV_032631 [Viti	0.872	0.773	0.740	1e-142
449442947	454	PREDICTED: LOW QUALITY PROTEIN: ankyrin-	0.919	0.777	0.749	1e-141
334185083	680	ankyrin repeat family protein [Arabidops	0.919	0.519	0.688	1e-132

>gi|225453006|ref|XP_002263664.1| PREDICTED: ankyrin-1 [Vitis vinifera] gi|296087918|emb|CBI35201.3| unnamed protein product [Vitis vinifera]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 285/359 (79%), Positives = 318/359 (88%), Gaps = 2/359 (0%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDA  ALA R +VQQFLNAACTGNLDL KK+A QLDD GKGL+ TVAD+KDANKRGAL
Sbjct: 1   MAPDAYAALATRNKVQQFLNAACTGNLDLFKKLAAQLDD-GKGLAGTVADVKDANKRGAL 59

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREG+T+VCKYLLEELKLDVD +DEDGETPLLHAARQGHT TAKYL +H A+P IPS
Sbjct: 60  HFAAREGRTEVCKYLLEELKLDVDAKDEDGETPLLHAARQGHTVTAKYLLDHSADPAIPS 119

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           +LGATALHHSAGIG+IELL +LLSKG ++DS+SDAGTPLIWAAGHGQ +AVKVLLEHHAN
Sbjct: 120 DLGATALHHSAGIGDIELLRFLLSKGVDIDSQSDAGTPLIWAAGHGQHDAVKVLLEHHAN 179

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAET+DNITPLLSAVAAGSL CL+LLIQAGA  NI+AGGATPLHIAADIGS EII CLL
Sbjct: 180 PNAETDDNITPLLSAVAAGSLACLELLIQAGARVNIIAGGATPLHIAADIGSPEIINCLL 239

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           KAGADPNVTDEDGQK IQVAAARGNR  VEILFPLTS   S+P+WT+DGI+E+MQSE GK
Sbjct: 240 KAGADPNVTDEDGQKAIQVAAARGNRGVVEILFPLTSPIQSVPEWTIDGIIEHMQSEMGK 299

Query: 301 QLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           Q +ETRN+KE N  +     +++P+V PE KKKAAEAK+RGD+AFK KDY MAVDAYTQ
Sbjct: 300 QQDETRNVKEANV-ETTLSKQDIPQVSPEAKKKAAEAKSRGDDAFKAKDYYMAVDAYTQ 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130626|ref|XP_002328336.1| predicted protein [Populus trichocarpa] gi|222838051|gb|EEE76416.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 271/361 (75%), Positives = 318/361 (88%), Gaps = 3/361 (0%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MA DAS ALAVR++VQQFL AAC GNLDLLK IA QLD +GKG+SKTVA+IKDANKRGAL
Sbjct: 1   MASDASDALAVRQKVQQFLTAACIGNLDLLKNIAAQLD-EGKGMSKTVAEIKDANKRGAL 59

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAARE +T+VCKYL+EELKLDVDT+DEDGETPL+HAARQGHT TAKYL + GANP IPS
Sbjct: 60  HFAAREAQTEVCKYLIEELKLDVDTKDEDGETPLVHAARQGHTATAKYLLDQGANPAIPS 119

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           +LGATALHHSAGIGN EL+ YLLSKGAEV+S+SDAGTPL+WAAGHGQ +A+KVLLEHHAN
Sbjct: 120 DLGATALHHSAGIGNTELMEYLLSKGAEVESQSDAGTPLLWAAGHGQLDALKVLLEHHAN 179

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNA TED++TPLLSAVAAGSL CL+LL+QAGA+ N+ AGGATPLHIAAD+GS EI+  LL
Sbjct: 180 PNAATEDDVTPLLSAVAAGSLACLELLVQAGADVNVTAGGATPLHIAADLGSPEILNRLL 239

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           +AGAD NVTDEDGQKPIQVAAARGNREAVEILFPLT++  S+ +WTVDGIL +M SE+ K
Sbjct: 240 EAGADSNVTDEDGQKPIQVAAARGNREAVEILFPLTTKVQSVREWTVDGILVHMLSEANK 299

Query: 301 QLEETRNLKENNAPKD-KAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           + EETR +KE +A ++   P ++LPEV PE K++A EAK RGD+AF++K+YL AV+ YTQ
Sbjct: 300 E-EETRIVKEIDASENMDMPKRDLPEVSPEAKERATEAKLRGDDAFRRKEYLTAVNDYTQ 358

Query: 360 V 360
           V
Sbjct: 359 V 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125660|ref|XP_002319644.1| predicted protein [Populus trichocarpa] gi|222858020|gb|EEE95567.1| predicted protein [Populus trichocarpa]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/352 (75%), Positives = 307/352 (87%), Gaps = 8/352 (2%)

Query: 9   LAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGK 68
           +A R++VQ FL AAC GNLDLLK IA QLD +G G+S TVADIKDANKRGALHFAAREG+
Sbjct: 1   IAARQKVQHFLTAACVGNLDLLKNIASQLD-EGSGMSNTVADIKDANKRGALHFAAREGQ 59

Query: 69  TDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128
           T+VCKYL+EELKLDVDT+DEDGETP++HAARQGHT TAKYL + GANP + S++GATALH
Sbjct: 60  TEVCKYLIEELKLDVDTKDEDGETPIIHAARQGHTATAKYLLDQGANPVMRSDVGATALH 119

Query: 129 HSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDN 188
           HSAGIGN EL+ YLLSKGAEVDS+SDAGTPLIWAAGHGQQ+A+KVLLEHHANPNAETED 
Sbjct: 120 HSAGIGNNELMEYLLSKGAEVDSQSDAGTPLIWAAGHGQQDALKVLLEHHANPNAETEDG 179

Query: 189 ITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNV 248
           +TPLLSAVAAGSLTCL+LL+QAGA+ N+ +GGATPLHIAADIGS EI+ CLL+AGADPNV
Sbjct: 180 VTPLLSAVAAGSLTCLELLVQAGADVNVASGGATPLHIAADIGSPEILNCLLEAGADPNV 239

Query: 249 TDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNL 308
           TDEDGQKPIQVAAARGNR AVEILFPLT++  SI KWTVDGILE+MQSE+ K+      +
Sbjct: 240 TDEDGQKPIQVAAARGNRAAVEILFPLTTKVQSISKWTVDGILEHMQSEANKK------V 293

Query: 309 KENNAPKDKAPMK-ELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           KE +A  D   +K +LPEV PE K++AAEAK+RGD+AFK+ +YL AV+ Y Q
Sbjct: 294 KEVDASGDTETLKRDLPEVSPEAKERAAEAKSRGDDAFKRNEYLTAVNDYAQ 345

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580917|ref|XP_002531277.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223529110|gb|EEF31090.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 280/363 (77%), Positives = 312/363 (85%), Gaps = 6/363 (1%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDAS ALAVR++VQ FL AACTGNLDLLK IA QLDD GKG++KTVADIKDANKRGAL
Sbjct: 1   MAPDASDALAVRQKVQNFLTAACTGNLDLLKNIAAQLDD-GKGMAKTVADIKDANKRGAL 59

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREGKT+VCKYLLE+LKLDVDT+D+DGETPL+HAARQGHT TA YL EHGANP + S
Sbjct: 60  HFAAREGKTEVCKYLLEDLKLDVDTKDDDGETPLIHAARQGHTATAMYLLEHGANPAVAS 119

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           +LGATALHHSAGIGNIELL YLLSKG EVDS+SDAGTPLIWAAGH Q +A+KVLLEHHAN
Sbjct: 120 DLGATALHHSAGIGNIELLRYLLSKGVEVDSQSDAGTPLIWAAGHAQPDALKVLLEHHAN 179

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAETEDNITPLLSAVAAGS+ CL+ L+QAGAN NI AGGATPLHIAAD GS+EI+ CLL
Sbjct: 180 PNAETEDNITPLLSAVAAGSVACLESLVQAGANVNITAGGATPLHIAADNGSSEILHCLL 239

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           KAG DPNV DEDGQKPIQVAAARGNR AVEILFPLTS+   I +WTVDGIL +M +E  K
Sbjct: 240 KAGTDPNVIDEDGQKPIQVAAARGNRAAVEILFPLTSKVDDIAEWTVDGILGHMHTEFDK 299

Query: 301 QLEETRNLK----ENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDA 356
           QL   R+LK    + +      P K++ EV PE K++AAEAKARGD+AFK+KDY MAVDA
Sbjct: 300 QL-VLRSLKFAFCKFSLKGTTVPKKDISEVSPEAKRRAAEAKARGDDAFKRKDYRMAVDA 358

Query: 357 YTQ 359
           YTQ
Sbjct: 359 YTQ 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483017|ref|XP_004156471.1| PREDICTED: ankyrin-1-like [Cucumis sativus]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 273/359 (76%), Positives = 303/359 (84%), Gaps = 2/359 (0%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDAS ALA RE VQQFLNAA  GN+DLLK +A +LDD GKGLS TVADIKDANKRGAL
Sbjct: 1   MAPDASDALAARETVQQFLNAARIGNIDLLKNLAARLDD-GKGLSGTVADIKDANKRGAL 59

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREGKT+VC++L+EELKLDVDT+DEDGETPL+HAARQGHT+TAKYL E GANP I S
Sbjct: 60  HFAAREGKTEVCRFLIEELKLDVDTRDEDGETPLIHAARQGHTDTAKYLVERGANPAIAS 119

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           +LGATALHHSAGIGNIELL +LLS+G +V+S+SDAGTPLIWAAGH QQEAVK+LLEHHAN
Sbjct: 120 DLGATALHHSAGIGNIELLNFLLSRGPDVNSQSDAGTPLIWAAGHAQQEAVKLLLEHHAN 179

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAET+D+ITPLLSAVAAGSL CLDLLIQAGA  NI AGGATPLHIAAD G+ EII  LL
Sbjct: 180 PNAETDDDITPLLSAVAAGSLACLDLLIQAGAKVNISAGGATPLHIAADSGNLEIINSLL 239

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           +AGADPN TDEDG KPIQVAAARG+R  VEIL PLTS    I  WT DGILEYMQ+E  K
Sbjct: 240 QAGADPNATDEDGLKPIQVAAARGSRAGVEILLPLTSAVKEISNWTTDGILEYMQNEINK 299

Query: 301 QLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
               +RN  E+N  KD    ++LPEV PE KKKAAEAK+RGD+AF  KD+  AVDAYTQ
Sbjct: 300 DQAVSRN-PEDNKHKDSTAREDLPEVSPEAKKKAAEAKSRGDDAFNTKDFHTAVDAYTQ 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807266|ref|NP_001242105.1| uncharacterized protein LOC100793914 [Glycine max] gi|255635001|gb|ACU17859.1| unknown [Glycine max]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 263/360 (73%), Positives = 302/360 (83%), Gaps = 2/360 (0%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDAS ALAVR++VQ FLNAA TG++DLLKK+A QLD +GK L+K+V  IKDANKRGAL
Sbjct: 1   MAPDASDALAVRQKVQLFLNAARTGSIDLLKKLALQLD-EGKDLAKSVEAIKDANKRGAL 59

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREG+T VC+YLL +LKL VD+QD+DGET L+HAARQGHT TAKYL +HGA+PT+ S
Sbjct: 60  HFAAREGQTSVCEYLLTDLKLSVDSQDDDGETALIHAARQGHTATAKYLIDHGADPTVAS 119

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           NLGATALHHSAGIG+ ELL YLLS+G   D ESDAGTPL+WAAGH Q  AV VLLEH AN
Sbjct: 120 NLGATALHHSAGIGDAELLKYLLSRGVNPDLESDAGTPLVWAAGHAQPAAVSVLLEHGAN 179

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAET+D ITPLLSAVAAGSL CL+LLIQAGA ANI AGGATPLHIAAD GS E++ CLL
Sbjct: 180 PNAETDDGITPLLSAVAAGSLACLELLIQAGAKANISAGGATPLHIAADNGSLELLNCLL 239

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           K GADP+V+DEDG KPIQVAAARG  +AVEILFPLTS+  +IP WTVDGILEYMQSE+ K
Sbjct: 240 KVGADPDVSDEDGVKPIQVAAARGYPKAVEILFPLTSKVDTIPTWTVDGILEYMQSETRK 299

Query: 301 QLEETRNLKENNAPKD-KAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           Q +E+ N KE N PK+   P + +PEV PE KK+AAEAK RGD AFK+ D+ MA+D YTQ
Sbjct: 300 QQDESINAKETNQPKEADFPEQNVPEVAPEAKKRAAEAKPRGDGAFKRNDHHMAIDFYTQ 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504107|ref|XP_003520840.1| PREDICTED: uncharacterized protein LOC100798118 [Glycine max]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 259/360 (71%), Positives = 300/360 (83%), Gaps = 2/360 (0%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDAS ALA R++VQ FLNAA TG++DLLKK+A QLD +GK L+K+V  IKDANKRGAL
Sbjct: 219 MAPDASDALAARQKVQLFLNAARTGSIDLLKKLALQLD-EGKDLAKSVEAIKDANKRGAL 277

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREG+T VC YLL +LKL VD+QD+DGET L+HA RQGHT TAKYL +HGA+PT+ S
Sbjct: 278 HFAAREGQTAVCDYLLTDLKLSVDSQDDDGETALIHATRQGHTATAKYLIDHGADPTVAS 337

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           NLGAT LHHSAGIG+ ELL YLLS+G   D ESD+GTPL+WAAGH Q  +V VLLEH AN
Sbjct: 338 NLGATVLHHSAGIGDTELLKYLLSRGVNPDLESDSGTPLVWAAGHAQPASVSVLLEHGAN 397

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAET+D ITPLLSAVAA SL CL+LLIQAGA  NI AGGATPLHIAAD GS E++ CLL
Sbjct: 398 PNAETDDGITPLLSAVAASSLACLELLIQAGAKVNISAGGATPLHIAADNGSLELLNCLL 457

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           KAGADPNV+DEDG KPIQV AARG  +AVEILFPLTS+  +IP WTVDGILEYMQSE+ K
Sbjct: 458 KAGADPNVSDEDGVKPIQVGAARGYLKAVEILFPLTSKVDTIPTWTVDGILEYMQSETRK 517

Query: 301 QLEETRNLKENNAPKD-KAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           QL+E+ N KE N PK+   P + +PEV PE KK+AAE+K+RGDEAFK+ DY MA+D+YTQ
Sbjct: 518 QLDESINDKETNQPKEADFPKQNVPEVAPEAKKRAAESKSRGDEAFKRNDYHMAIDSYTQ 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788021|emb|CAN69337.1| hypothetical protein VITISV_032631 [Vitis vinifera]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 266/359 (74%), Positives = 297/359 (82%), Gaps = 24/359 (6%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDA  ALA R +VQQFL+      + +  ++A QLDD GKGL+ TVAD+KDANKRGAL
Sbjct: 1   MAPDAYAALATRNKVQQFLSMQLAQAILISSRLAAQLDD-GKGLAGTVADVKDANKRGAL 59

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREG+T+VCKYLLEELKLDVD +DEDGETPLLHAARQGHT TAKYL +HGA+P IPS
Sbjct: 60  HFAAREGRTEVCKYLLEELKLDVDAKDEDGETPLLHAARQGHTVTAKYLLDHGADPAIPS 119

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           +LGATALHHSAGIG+IELL +LLSKG ++DS+SDAGTPLIWAAGHGQ +AVKVLLEHHAN
Sbjct: 120 DLGATALHHSAGIGDIELLRFLLSKGVDIDSQSDAGTPLIWAAGHGQHDAVKVLLEHHAN 179

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAET+DNITPLLSAVAAGSL CL+LLIQAGA  NI+AGGATPLHIAADIGS EII CLL
Sbjct: 180 PNAETDDNITPLLSAVAAGSLACLELLIQAGARVNIIAGGATPLHIAADIGSPEIINCLL 239

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           KAGADPNVTDEDGQK IQVAAARGNR  VEILFPLTS   S+P+WT+DGI+E+MQSE GK
Sbjct: 240 KAGADPNVTDEDGQKAIQVAAARGNRGVVEILFPLTSPIQSVPEWTIDGIIEHMQSEMGK 299

Query: 301 QLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           Q                       +V PE KKKAAEAK+RGD+AFK KDY MAVDAYTQ
Sbjct: 300 Q-----------------------QVSPEAKKKAAEAKSRGDDAFKAKDYYMAVDAYTQ 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442947|ref|XP_004139242.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin-1-like [Cucumis sativus]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/359 (74%), Positives = 299/359 (83%), Gaps = 6/359 (1%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDAS ALA RE VQQFLNAA  GN+DLLK +A +LDD GKGLS TVADIKDAN     
Sbjct: 1   MAPDASDALAARETVQQFLNAARIGNIDLLKNLAARLDD-GKGLSGTVADIKDANX---- 55

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREGKT+VC++L+EELKLDVDT+DEDGETPL+HAARQGHT+TAKYL E GANP I S
Sbjct: 56  HFAAREGKTEVCRFLIEELKLDVDTRDEDGETPLIHAARQGHTDTAKYLVERGANPAIAS 115

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           +LGATALHHSAGIGNIELL +LLS+G +V+S+SDAGTPLIWAAGH QQEAVK+LLEHHAN
Sbjct: 116 DLGATALHHSAGIGNIELLNFLLSRGPDVNSQSDAGTPLIWAAGHAQQEAVKLLLEHHAN 175

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAET+D+ITPLLSAVAAGSL CLDLLIQAGA  NI AGGATPLHIAAD G+ EII  LL
Sbjct: 176 PNAETDDDITPLLSAVAAGSLACLDLLIQAGAKVNISAGGATPLHIAADSGNLEIINSLL 235

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           +AGADPN TDEDG KPIQVAAARG+R  VEIL PLTS    IP WT DGILEYMQ+E  K
Sbjct: 236 QAGADPNATDEDGLKPIQVAAARGSRAGVEILLPLTSAVKEIPNWTTDGILEYMQNEINK 295

Query: 301 QLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
               +RN  E+N  KD    ++LPEV PE KKKAAEAK+RGD+AF  KD+  AVDAYTQ
Sbjct: 296 DQAVSRN-PEDNKHKDSTAREDLPEVSPEAKKKAAEAKSRGDDAFNTKDFHTAVDAYTQ 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185083|ref|NP_001189808.1| ankyrin repeat family protein [Arabidopsis thaliana] gi|332640603|gb|AEE74124.1| ankyrin repeat family protein [Arabidopsis thaliana]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/359 (68%), Positives = 295/359 (82%), Gaps = 6/359 (1%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDAS ALA RE+VQQ LNAACTGNL+ LK +AKQLD +GK L+KTV  IKDANKRGAL
Sbjct: 225 MAPDASTALAAREKVQQILNAACTGNLEFLKNVAKQLD-EGKDLTKTVESIKDANKRGAL 283

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREG+T++C+YLLEELKL+ D +DE G+TPL+HAARQG  ET KYL E GA+P I S
Sbjct: 284 HFAAREGQTEICRYLLEELKLNADAKDETGDTPLVHAARQGQIETVKYLLEQGADPNIAS 343

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
            LGATALHH+AG G IELL  LLS+G  VDSES++GTPLIWAAGH Q+ AV+VLLEH+AN
Sbjct: 344 ELGATALHHAAGTGEIELLKELLSRGVPVDSESESGTPLIWAAGHDQKNAVEVLLEHNAN 403

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAETEDNITPLLSAVAAGSL+CL+LL++AGA AN+ AGGATPLHIAADIG+ E+I CLL
Sbjct: 404 PNAETEDNITPLLSAVAAGSLSCLELLVKAGAKANVFAGGATPLHIAADIGNLELINCLL 463

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           KAGADPN  DE+G +P++VAAAR NR+ VEILFPLT++  ++  WTVDGIL +M  ES K
Sbjct: 464 KAGADPNQKDEEGNRPLEVAAARDNRKVVEILFPLTTKPETVSDWTVDGILAHM--ESNK 521

Query: 301 QLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           + EE  N  ++   ++    K+LP V PE K KAAEAKARG +AF +KD+ MA+DAYTQ
Sbjct: 522 EQEENSNKAKS---QETGIKKDLPVVSPEAKAKAAEAKARGQDAFHRKDFQMAIDAYTQ 577

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2084868	456	TPR10 "AT3G04710" [Arabidopsis	0.919	0.774	0.643	1.3e-118
UNIPROTKB|F1SE30	1885	ANK1 "Uncharacterized protein"	0.630	0.128	0.362	2.8e-31
UNIPROTKB|P16157	1881	ANK1 "Ankyrin-1" [Homo sapiens	0.630	0.128	0.358	4.5e-31
MGI|MGI:88024	1862	Ank1 "ankyrin 1, erythroid" [M	0.630	0.129	0.354	4.9e-30
UNIPROTKB|F1PRD8	1857	ANK1 "Uncharacterized protein"	0.630	0.130	0.354	2.1e-29
UNIPROTKB|F1PRC8	1916	ANK1 "Uncharacterized protein"	0.630	0.126	0.354	2.3e-29
UNIPROTKB|F1MY81	1136	ANK1 "Uncharacterized protein"	0.630	0.213	0.358	3.7e-29
ZFIN|ZDB-GENE-091113-6	1923	si:ch211-263m18.3 "si:ch211-26	0.630	0.125	0.338	6.6e-27
ASPGD|ASPL0000062824	1030	AN1130 [Emericella nidulans (t	0.580	0.216	0.336	7.1e-27
UNIPROTKB|F1LM13	1783	Ank3 "Protein Ank3" [Rattus no	0.611	0.131	0.333	4.6e-26

TAIR|locus:2084868 TPR10 "AT3G04710" [Arabidopsis thaliana (taxid:3702)]

 Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
 Identities = 231/359 (64%), Positives = 276/359 (76%)

Query:     1 MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
             MAPDAS ALA RE+VQQ LNAACTGNL+ LK +AKQLD+ GK L+KTV  IKDANKRGAL
Sbjct:     1 MAPDASTALAAREKVQQILNAACTGNLEFLKNVAKQLDE-GKDLTKTVESIKDANKRGAL 59

Query:    61 HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
             HFAAREG+T++C+YLLEELKL+ D +DE G+TPL+HAARQG  ET KYL E GA+P I S
Sbjct:    60 HFAAREGQTEICRYLLEELKLNADAKDETGDTPLVHAARQGQIETVKYLLEQGADPNIAS 119

Query:   121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
              LGATALHH+AG G IELL  LLS+G  VDSES++GTPLIWAAGH Q+ AV+VLLEH+AN
Sbjct:   120 ELGATALHHAAGTGEIELLKELLSRGVPVDSESESGTPLIWAAGHDQKNAVEVLLEHNAN 179

Query:   181 PNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLL 240
             PNAETEDNITPLLSAVAAGSL+CL+LL++            TPLHIAADIG+ E+I CLL
Sbjct:   180 PNAETEDNITPLLSAVAAGSLSCLELLVKAGAKANVFAGGATPLHIAADIGNLELINCLL 239

Query:   241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
             KAGADPN  DE+G +P++VAAAR NR+ VEILFPLT++  ++  WTVDGIL +M  ES K
Sbjct:   240 KAGADPNQKDEEGNRPLEVAAARDNRKVVEILFPLTTKPETVSDWTVDGILAHM--ESNK 297

Query:   301 QLEETRNLKENNAPKDKAPMKELPEVRPEIXXXXXXXXXRGDEAFKQKDYLMAVDAYTQ 359
             + EE  N  ++     K   K+LP V PE          RG +AF +KD+ MA+DAYTQ
Sbjct:   298 EQEENSNKAKSQETGIK---KDLPVVSPEAKAKAAEAKARGQDAFHRKDFQMAIDAYTQ 353

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0000741 "karyogamy" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

UNIPROTKB|F1SE30 ANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 346 (126.9 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
 Identities = 92/254 (36%), Positives = 133/254 (52%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             A+  G+L ++K + +      +  S  V+++K       LH AAR G T+V KYLL+  K
Sbjct:   444 ASFMGHLPIVKNLLQ------RDASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN-K 493

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
               V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E   
Sbjct:   494 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETAL 553

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL KGA     +  G TPL  AA +G+    ++LLEH A+PNA  ++ +TPL  AV   
Sbjct:   554 ALLEKGASQACMTKKGFTPLHVAAKYGKVRVAELLLEHDAHPNAAGKNGLTPLHVAVHHN 613

Query:   200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
              L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct:   614 HLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLH 673

Query:   259 VAAARGNREAVEIL 272
             +AA  G+ E V +L
Sbjct:   674 LAAQEGHAEMVALL 687

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|P16157 ANK1 "Ankyrin-1" [Homo sapiens (taxid:9606)]

 Score = 342 (125.4 bits), Expect = 4.5e-31, Sum P(2) = 4.5e-31
 Identities = 91/254 (35%), Positives = 134/254 (52%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+  K
Sbjct:   411 ASFMGHLPIVKNLLQ------RGASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN-K 460

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
               V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E + 
Sbjct:   461 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 520

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL K A     +  G TPL  AA +G+    ++LLE  A+PNA  ++ +TPL  AV   
Sbjct:   521 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 580

Query:   200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
             +L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct:   581 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 640

Query:   259 VAAARGNREAVEIL 272
             +AA  G+ E V +L
Sbjct:   641 LAAQEGHAEMVALL 654

GO:0007165 "signal transduction" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0030507 "spectrin binding" evidence=IDA;NAS;IPI

GO:0016323 "basolateral plasma membrane" evidence=NAS

GO:0008093 "cytoskeletal adaptor activity" evidence=IDA;TAS

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=TAS;IPI

GO:0005856 "cytoskeleton" evidence=NAS

GO:0006887 "exocytosis" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0014731 "spectrin-associated cytoskeleton" evidence=IDA

GO:0051117 "ATPase binding" evidence=IPI

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

MGI|MGI:88024 Ank1 "ankyrin 1, erythroid" [Mus musculus (taxid:10090)]

 Score = 339 (124.4 bits), Expect = 4.9e-30, Sum P(2) = 4.9e-30
 Identities = 90/254 (35%), Positives = 134/254 (52%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+  K
Sbjct:   407 ASFMGHLPIVKNLLQ------RGASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN-K 456

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
                + + +D +TPL  AAR GHT   K L E+GA+P + +  G T LH +A  G+++   
Sbjct:   457 AKANAKAKDDQTPLHCAARIGHTGMVKLLLENGASPNLATTAGHTPLHTAAREGHVDTAL 516

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL K A     +  G TPL  AA +G+    ++LLEH A+PNA  ++ +TPL  AV   
Sbjct:   517 ALLEKEASQACMTKKGFTPLHVAAKYGKVRLAELLLEHDAHPNAAGKNGLTPLHVAVHHN 576

Query:   200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
             +L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct:   577 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLH 636

Query:   259 VAAARGNREAVEIL 272
             +AA  G+ E V +L
Sbjct:   637 LAAQEGHTEMVALL 650

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=ISO

GO:0014731 "spectrin-associated cytoskeleton" evidence=ISO;IMP

GO:0015672 "monovalent inorganic cation transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0030018 "Z disc" evidence=ISO

GO:0030507 "spectrin binding" evidence=ISO

GO:0030673 "axolemma" evidence=ISO

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0031430 "M band" evidence=ISO

GO:0031672 "A band" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0048821 "erythrocyte development" evidence=IMP

GO:0051117 "ATPase binding" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

UNIPROTKB|F1PRD8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 328 (120.5 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
 Identities = 90/254 (35%), Positives = 130/254 (51%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+  K
Sbjct:   405 ASFMGHLPIVKNLLQ------RGASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN-K 454

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
               V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G +E   
Sbjct:   455 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGQVETAL 514

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL K A     +  G TPL  AA +G+    ++LL   A+PNA  ++ +TPL  AV   
Sbjct:   515 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLGRDAHPNAAGKNGLTPLHVAVHHN 574

Query:   200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
              L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct:   575 HLDIVRLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLH 634

Query:   259 VAAARGNREAVEIL 272
             +AA  G+ E V +L
Sbjct:   635 LAAQEGHAEMVALL 648

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PRC8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 328 (120.5 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
 Identities = 90/254 (35%), Positives = 130/254 (51%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+  K
Sbjct:   415 ASFMGHLPIVKNLLQ------RGASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN-K 464

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
               V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G +E   
Sbjct:   465 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGQVETAL 524

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL K A     +  G TPL  AA +G+    ++LL   A+PNA  ++ +TPL  AV   
Sbjct:   525 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLGRDAHPNAAGKNGLTPLHVAVHHN 584

Query:   200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
              L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct:   585 HLDIVRLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLH 644

Query:   259 VAAARGNREAVEIL 272
             +AA  G+ E V +L
Sbjct:   645 LAAQEGHAEMVALL 658

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1MY81 ANK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 336 (123.3 bits), Expect = 3.7e-29, P = 3.7e-29
 Identities = 91/254 (35%), Positives = 131/254 (51%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             A+  G+L ++K + +      +  S  V+++K       LH AAR G T+V KYLL+  K
Sbjct:   410 ASFMGHLPIVKSLLQ------REASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN-K 459

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
               V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E   
Sbjct:   460 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETAL 519

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL K A     +  G TPL  AA +G+    ++LLEH A+PNA  +  +TPL  AV   
Sbjct:   520 ALLEKEASQTCMTKKGFTPLHVAAKYGKVRMAELLLEHDAHPNAAGKSGLTPLHVAVHHN 579

Query:   200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
              L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct:   580 HLDVVRLLLPRGGSPHSPALNGYTPLHIAAKQNQLEVARSLLQYGGSANAESVQGVTPLH 639

Query:   259 VAAARGNREAVEIL 272
             +AA  G+ E V +L
Sbjct:   640 LAAQEGHAEMVALL 653

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-091113-6 si:ch211-263m18.3 "si:ch211-263m18.3" [Danio rerio (taxid:7955)]

 Score = 318 (117.0 bits), Expect = 6.6e-27, P = 6.6e-27
 Identities = 86/254 (33%), Positives = 129/254 (50%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             AA  G+L+++K + +      +G S   +++K       LH AAR G  +V ++LL+   
Sbjct:   444 AAFMGHLNIVKSLLQ------RGASPNASNVKVETP---LHMAARAGHCEVAQFLLQN-N 493

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
               VD + +D +TPL  AAR GH E  K L EH ANP   +  G T LH +A  G+ +   
Sbjct:   494 AQVDAKAKDDQTPLHCAARMGHKELVKLLMEHKANPDSATTAGHTPLHIAAREGHAQTTR 553

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL + A+    +  G TPL  A  +G+ + V++LLE  ANPNA  ++ +TPL  AV   
Sbjct:   554 ILLDENAQQTKMTKKGFTPLHVACKYGKVDVVELLLERGANPNAAGKNGLTPLHVAVHHN 613

Query:   200 SLTCLDLLIQXXXX-XXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
             +L  + LL+              T LHIAA     E+   LL+ GA+ N     G  P+ 
Sbjct:   614 NLDVVKLLVSKGGSPHSTARNGYTALHIAAKQNQLEVASSLLQYGANANSESLQGITPLH 673

Query:   259 VAAARGNREAVEIL 272
             +A+  G  + V +L
Sbjct:   674 LASQEGQPDMVALL 687

GO:0007165 "signal transduction" evidence=IEA

ASPGD|ASPL0000062824 AN1130 [Emericella nidulans (taxid:162425)]

 Score = 314 (115.6 bits), Expect = 7.1e-27, P = 7.1e-27
 Identities = 76/226 (33%), Positives = 117/226 (51%)

Query:    49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
             AD K  + +  L +AA +GK  V + LL+      D+++  G+TP+ +AA +GH    + 
Sbjct:   633 ADSKTISGKTPLSYAASKGKESVVRLLLQH-GAQADSKNNTGQTPISYAASKGHESVVRL 691

Query:   109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQ 167
             L  HGA     +N G T L  +A  G+  ++   L  GA+ D  + D GTPL  AA  G 
Sbjct:   692 LLTHGAQADSKANWGQTPLSRAAFDGHESVVRLFLEHGAQADCKDGDGGTPLSSAAATGH 751

Query:   168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXX-TPLHI 226
             +  V++LL+H A  +++ +D  TPL  A + G  + + LL++             TPL  
Sbjct:   752 ESVVRLLLKHGAQADSKDDDCRTPLSYAASNGYESVVKLLLEHGARADSKDDDFRTPLSY 811

Query:   227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             AA  G   ++K LL+ GA  +  D+D Q P+  AA+RG    V IL
Sbjct:   812 AASYGYESVVKLLLEHGARTDSKDKDSQTPLSYAASRGYESVVRIL 857

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1LM13 Ank3 "Protein Ank3" [Rattus norvegicus (taxid:10116)]

 Score = 291 (107.5 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
 Identities = 81/243 (33%), Positives = 117/243 (48%)

Query:    32 KIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE 91
             K+AK L D+     K   + K  N    LH A ++ +  V + LL+     +    E G 
Sbjct:   341 KVAKVLLDK-----KANPNAKALNGFTPLHIACKKNRIRVMELLLKH-GASIQAVTESGL 394

Query:    92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
             TP+  AA  GH      L  HGA+P   +  G TALH +A  G  E++ YL+  GA+V++
Sbjct:   395 TPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEA 454

Query:   152 ES-DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTCLDLLIQ 209
             ++ D  TPL  +A  G+ + V+ LL+  A+PNA T    TPL LSA          LL  
Sbjct:   455 KAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDH 514

Query:   210 XXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
                         TPLH+AA  G  E+   LL+  A P+   + G  P+ VAA   N++  
Sbjct:   515 GASLSITTKKGFTPLHVAAKYGKLEVASLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVA 574

Query:   270 EIL 272
              +L
Sbjct:   575 LLL 577

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-29
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-20
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-17
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-16
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-16
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-16
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-14
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-14
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-14
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-13
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-12
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-11
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-11
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-11
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	8e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-07
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	5e-07
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	6e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-05
smart00248	30	smart00248, ANK, ankyrin repeats	2e-05
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-05
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	4e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	7e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	5e-04
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	5e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	7e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.003
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004
cd00851	103	cd00851, MTH1175, This uncharacterized conserved p	0.004
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  117 bits (296), Expect = 3e-32
 Identities = 53/117 (45%), Positives = 74/117 (63%), Gaps = 1/117 (0%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI 216
           TPL  AA +G  E VK+LLE+ A+ NA+  D  TPL  A   G L  + LL++ GA+ N 
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68

Query: 217 V-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
               G TPLH+AA  G+ +++K LLK GAD N  D+DG+ P+ +AA  G+ E V++L
Sbjct: 69  RDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  114 bits (287), Expect = 5e-31
 Identities = 54/127 (42%), Positives = 72/127 (56%), Gaps = 2/127 (1%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           + +D + R  LH AA  G  +V K LLE    DV+ +D DG TPL  AA+ GH E  K L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168
            E GA+       G T LH +A  GN++++  LL  GA+V++    G TPL  AA +G  
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119

Query: 169 EAVKVLL 175
           E VK+LL
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  109 bits (273), Expect = 5e-29
 Identities = 58/158 (36%), Positives = 74/158 (46%), Gaps = 33/158 (20%)

Query: 84  DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
           + +DEDG TPL  AA  GH E  K L E+GA+     N G T LH               
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLH--------------- 45

Query: 144 SKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203
                             AA +G  E VK+LLE  A+ NA  +D  TPL  A   G+L  
Sbjct: 46  -----------------LAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDV 88

Query: 204 LDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLL 240
           + LL++ GA+ N     G TPLH+AA  G  E++K LL
Sbjct: 89  VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 88.1 bits (219), Expect = 1e-21
 Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           L  AA+ G+ E  K L E GA+  +      TALH +A  GN+E++  LL  GA+V+++ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE 184
             G T L  AA +G  E VK+LLEH A+ N +
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 86.7 bits (215), Expect = 8e-21
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLL 240
           NA  ED  TPL  A + G L  + LL++ GA+ N     G TPLH+AA  G  EI+K LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           + GAD N  D+DG  P+ +AA  GN + V++L
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLL 92

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 84.6 bits (210), Expect = 2e-20
 Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 159 LIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV- 217
           L  AA +G  E VK+LLE  A+ N    D  T L  A   G+L  + LL++ GA+ N   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLG--DTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 218 AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD 250
             G T LH+AA  G+ EI+K LL+ GAD N+ D
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 83.1 bits (206), Expect = 7e-20
 Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 3/93 (3%)

Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           LH AA+ G  ++ K LLE+   DV+  D D  T L  AAR G+ E  K L EHGA+    
Sbjct: 1   LHLAAKNGNLELVKLLLEK-GADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSE 152
              G TALH +A  GN+E++  LL  GA+++ +
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 87.8 bits (218), Expect = 4e-19
 Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 29/234 (12%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT-----E 104
           D         L+ A      DV K LL+    D+++  ++  TPL + +   +      E
Sbjct: 29  DYSYKKPVLPLYLAKEARNIDVVKILLDN-GADINSSTKNNSTPLHYLSNIKYNLTDVKE 87

Query: 105 TAKYLFEHGANPTIPSNLGATALHHSAG--IGNIELLTYLLSKGAEVDSESDAGTPLIWA 162
             K L E+GAN   P N G T L ++      +  ++ YLL  GA V+ ++  G  L+  
Sbjct: 88  IVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL 147

Query: 163 A---GHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-A 218
                    + +K+L++   + NA+                   ++ L+  G   NI   
Sbjct: 148 YLESNKIDLKILKLLIDKGVDINAKNR-----------------VNYLLSYGVPINIKDV 190

Query: 219 GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            G TPLH A    + E +K LL  GA+PN+ ++ G  P+ +A    N+E  ++L
Sbjct: 191 YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL 244

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 80.8 bits (200), Expect = 5e-19
 Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 127 LHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETE 186
           LH +A  GN+EL+  LL KGA+V+   D  T L  AA +G  E VK+LLEH A+ NA+ +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL-GDTDTALHLAARNGNLEIVKLLLEHGADVNAKDK 59

Query: 187 DNITPLLSAVAAGSLTCLDLLIQAGANANIV 217
           D  T L  A   G+L  + LL++ GA+ N+ 
Sbjct: 60  DGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 78.1 bits (193), Expect = 4e-18
 Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 12/98 (12%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           AA  GNL+L+K + +      KG     AD+   +   ALH AAR G  ++ K LL E  
Sbjct: 4   AAKNGNLELVKLLLE------KG-----ADVNLGDTDTALHLAARNGNLEIVKLLL-EHG 51

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            DV+ +D+DG T L  AAR G+ E  K L EHGA+  +
Sbjct: 52  ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 74.6 bits (184), Expect = 7e-17
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 192 LLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
           L  A   G+L  + LL++ GA+ N+     T LH+AA  G+ EI+K LL+ GAD N  D+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD-TALHLAARNGNLEIVKLLLEHGADVNAKDK 59

Query: 252 DGQKPIQVAAARGNREAVEIL 272
           DG   + +AA  GN E V++L
Sbjct: 60  DGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 57/194 (29%), Positives = 103/194 (53%), Gaps = 3/194 (1%)

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
           +  +DV+ +D + +T L +A ++G  E+ K LFE+GA+  I  + G   +H +      +
Sbjct: 112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFD 171

Query: 138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAV 196
           ++  LL KGA  + + + G +PL  AA +G    +K+L++H  +   + ++  TPL +A+
Sbjct: 172 IIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI 231

Query: 197 AAGSLTCLDLLIQAGANANIVAGGATPLHIAADIG-STEIIKCLLKAGADPNVTDEDGQK 255
                + ++LLI   +  +    G+TPLH A +     +II  LL   AD ++ D  G+ 
Sbjct: 232 IHNR-SAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGEN 290

Query: 256 PIQVAAARGNREAV 269
           PI  A    N++ V
Sbjct: 291 PIDTAFKYINKDPV 304

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 73/295 (24%), Positives = 105/295 (35%), Gaps = 54/295 (18%)

Query: 11  VRERVQQFLNAACTGNLD------LLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHF 62
           VR  +    +    G          L   ++++ D  + L +  AD+   +      LH 
Sbjct: 30  VRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHL 89

Query: 63  AAREGKT-DVCKYLLEELKLDVDTQDEDGETPLLHAARQG---HTETAKYLFEHGANPTI 118
                 T DV K L++    DV+ +D+ G TPL H    G   + +  + L   GA+   
Sbjct: 90  YLYNATTLDVIKLLIK-AGADVNAKDKVGRTPL-HVYLSGFNINPKVIRLLLRKGADVNA 147

Query: 119 PSNLGATALH---HSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLL 175
               G T L     S    N+ELL  L+  GA+V +  D                 + LL
Sbjct: 148 LDLYGMTPLAVLLKSRNA-NVELLRLLIDAGADVYAVDDRF---------------RSLL 191

Query: 176 EHHAN------------------PNAETEDNITPLLSAVAAGSLTCLDL--LIQAGANAN 215
            HH                    P A      TPL S     S     +  L+ AG + N
Sbjct: 192 HHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISIN 251

Query: 216 IV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
                G TPLH AA   +    + L+  GAD N    DG  P+ +     N  AV
Sbjct: 252 ARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAV 306

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 2/173 (1%)

Query: 47  TVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA 106
            + D+K  +    LH A  EG     + LL+  K   D   +DG TPL  A      +  
Sbjct: 59  AIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIM 118

Query: 107 KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGH 165
           K L   GA+P IP+    + LH +  +G+I+ +  L+   A +D E   G TPLI A   
Sbjct: 119 KLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAK 178

Query: 166 GQQEAVKVLLEHHANPNAETED-NITPLLSAVAAGSLTCLDLLIQAGANANIV 217
           G     K+LL+  AN +   ++  +  L  A+    +  + L I+ GA+ NI+
Sbjct: 179 GDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM 231

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 79.3 bits (195), Expect = 3e-16
 Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 4/231 (1%)

Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
             + AL  A   G+ D+ + LL+ + ++ + +  DG +P+  A +   +E  K L +HGA
Sbjct: 1   MDQVALCDAILFGELDIARRLLD-IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGA 59

Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS--ESDAGTPLIWAAGHGQQEAVK 172
            P +      + LH +   G+++ +  LL  G   D     D  TPL  A    + + +K
Sbjct: 60  IPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMK 119

Query: 173 VLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIG 231
           +L+   A+P+    D  +PL  AV  G +  ++LLI   A  +I    G TPL IA   G
Sbjct: 120 LLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKG 179

Query: 232 STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSI 282
              I K LL +GA+ +   ++G       A   N+  +  LF     D +I
Sbjct: 180 DIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 71.4 bits (174), Expect = 3e-14
 Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 11/183 (6%)

Query: 43  GLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGH 102
            L  +    K  N    L        ++    L   +   +  +D DG  PL  AA +G 
Sbjct: 28  SLDLSNPSDKKLNLYLELALLPAASLSE--LLLKLIVDRHLAARDLDGRLPLHSAASKGD 85

Query: 103 TETAKYLFEHGANPTIPSNLGATALHHSA-----GIGNIELLTYLLSKGAEVD---SESD 154
            +  K L   GA+       G T LH +A       GNIE+   LL  GA++D      +
Sbjct: 86  DKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE 145

Query: 155 AG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN 213
            G TPL WAA +G  + V++LLE  A+PN+     +T L  A   G +  + LL+  G +
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLH 205

Query: 214 ANI 216
            ++
Sbjct: 206 LSL 208

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 71.0 bits (173), Expect = 4e-14
 Identities = 58/199 (29%), Positives = 83/199 (41%), Gaps = 13/199 (6%)

Query: 87  DEDGETPLLHAARQGH----TETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
            +   + LL   +             L    +NP+         L         ELL  L
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKL 60

Query: 143 LSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT 202
           +        + D   PL  AA  G  + VK+LL   A+ NA+  D  TPL  A   G+  
Sbjct: 61  IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPP 120

Query: 203 -----CLDLLIQAGANANIVA----GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDG 253
                   LL++AGA+ ++       G TPLH AA  G  +I++ LL+AGADPN  +  G
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYG 180

Query: 254 QKPIQVAAARGNREAVEIL 272
              +  AA  G  E V++L
Sbjct: 181 VTALDPAAKNGRIELVKLL 199

Length = 235

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 73.0 bits (179), Expect = 7e-14
 Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 8/163 (4%)

Query: 111 EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQE 169
           EH  +P + SNL   A       GN  LL  LL    + D  +S   TPL  AA  G ++
Sbjct: 519 EHD-DPNMASNLLTVA-----STGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYED 572

Query: 170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAAD 229
            V VLL+H  N +    +  T L +A++A       +L    + ++  A G   L  AA 
Sbjct: 573 CVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDL-LCTAAK 631

Query: 230 IGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                 +K LLK G + +  D  G   +QVA A  + + V +L
Sbjct: 632 RNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLL 674

Length = 823

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 72.2 bits (177), Expect = 8e-14
 Identities = 51/189 (26%), Positives = 76/189 (40%), Gaps = 36/189 (19%)

Query: 75  LLEELKLDVDTQDED-GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI 133
           LL     D++ +D   G T L +A         + L  +GAN  IP     + LHH+   
Sbjct: 152 LLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKH 211

Query: 134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ-EAVKVLLEHHANPNAETEDNITP 191
            N  ++  LL  GA  D+    G TPL  + G+ +  + +K+LLEH  + NA++      
Sbjct: 212 YNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS------ 265

Query: 192 LLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
                       L L               T LH +  I S   +K LL+ GAD N  + 
Sbjct: 266 ----------YILGL---------------TALHSS--IKSERKLKLLLEYGADINSLNS 298

Query: 252 DGQKPIQVA 260
               P+  A
Sbjct: 299 YKLTPLSSA 307

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 71.1 bits (174), Expect = 2e-13
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 9/152 (5%)

Query: 50  DIKDANK-RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           ++KD +K   ALH+A       + + LL     +V+  D+   +PL HA +  +      
Sbjct: 161 NMKDRHKGNTALHYATENKDQRLTELLLSY-GANVNIPDKTNNSPLHHAVKHYNKPIVHI 219

Query: 109 LFEHGANPTIPSNLGATALHHSAG-IGNIELLTYLLSKGAEVDSESDAGTPLIWAAGH-- 165
           L E+GA+       G T LH S G   + ++L  LL  G +V+++S     L   A H  
Sbjct: 220 LLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS---YILGLTALHSS 276

Query: 166 -GQQEAVKVLLEHHANPNAETEDNITPLLSAV 196
              +  +K+LLE+ A+ N+     +TPL SAV
Sbjct: 277 IKSERKLKLLLEYGADINSLNSYKLTPLSSAV 308

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 70.0 bits (171), Expect = 4e-13
 Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 20/196 (10%)

Query: 88  EDGETPLLHAARQGHTETAKYLFEHGA-----NPTIPSNLGATALHHSAGIGNIELLTYL 142
           ++  TPL+ A R G  +  +   +HGA     N  IP  L  TA+     IG  +++  L
Sbjct: 33  DETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPL-LTAIK----IGAHDIIKLL 87

Query: 143 LSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT 202
           +  G  VD+ S    P I      +++ +K +L+   + N +  +  T L  A+  G L 
Sbjct: 88  IDNG--VDT-SILPIPCI------EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLE 138

Query: 203 CLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
            + +L + GA+ NI    G  P+HIA      +IIK LL+ GA  NV D +G+ P+  AA
Sbjct: 139 SIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAA 198

Query: 262 ARGNREAVEILFPLTS 277
             G+   +++L    +
Sbjct: 199 EYGDYACIKLLIDHGN 214

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 67.5 bits (164), Expect = 5e-13
 Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 10/131 (7%)

Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ-----EAVKVLLE 176
           G   LH +A  G+ +++  LL+ GA+V+++   G TPL  AA +G       E  K+LLE
Sbjct: 73  GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE 132

Query: 177 HHA---NPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGS 232
             A     N   ED  TPL  A   G    ++LL++AGA+ N     G T L  AA  G 
Sbjct: 133 AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGR 192

Query: 233 TEIIKCLLKAG 243
            E++K LL  G
Sbjct: 193 IELVKLLLDKG 203

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 64.8 bits (157), Expect = 5e-12
 Identities = 46/141 (32%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 18  FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKT-----DVC 72
             +AA  G+  ++K +     D          + KDA+    LH AA  G       +V 
Sbjct: 77  LHSAASKGDDKIVKLLLASGAD---------VNAKDADGDTPLHLAALNGNPPEGNIEVA 127

Query: 73  KYLLE--ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130
           K LLE        + +DEDG TPL  AA  G  +  + L E GA+P   ++ G TAL  +
Sbjct: 128 KLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPA 187

Query: 131 AGIGNIELLTYLLSKGAEVDS 151
           A  G IEL+  LL KG  +  
Sbjct: 188 AKNGRIELVKLLLDKGLHLSL 208

Length = 235

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 18/178 (10%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE 78
           L  A TGN  LL+++ K         +K   DI D+  R  LH AA +G  D C  +L +
Sbjct: 530 LTVASTGNAALLEELLK---------AKLDPDIGDSKGRTPLHIAASKGYED-CVLVLLK 579

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAK--YLFEHGANPTIPSNLGATALHHSAGIGNI 136
              +V  +D +G T L +A    H +  +  Y F   ++P    +L  TA    A   ++
Sbjct: 580 HACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTA----AKRNDL 635

Query: 137 ELLTYLLSKGAEVDSES-DAGTPLIWAAGHGQQEAVKVLLEHHAN-PNAETEDNITPL 192
             +  LL +G  VDSE     T L  A      + V++L+ + A+   A T+D+ +P 
Sbjct: 636 TAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPT 693

Length = 823

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 11/216 (5%)

Query: 75  LLEEL---KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA 131
           LLEEL   KLD D  D  G TPL  AA +G+ +    L +H  N  I    G TAL ++ 
Sbjct: 540 LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI 599

Query: 132 GIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITP 191
              + ++   +L   A +     AG  L  AA      A+K LL+   N ++E     T 
Sbjct: 600 SAKHHKIF-RILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATA 658

Query: 192 LLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
           L  A+A   +  + LLI  GA+ +         +   D   TE+ + L K     ++T  
Sbjct: 659 LQVAMAEDHVDMVRLLIMNGADVDKA-------NTDDDFSPTELRELLQKRELGHSITIV 711

Query: 252 DGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTV 287
           D     +    R        L   +S++   P+ ++
Sbjct: 712 DSVPADEPDLGRDGGSRPGRLQGTSSDNQCRPRVSI 747

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 57  RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           R ALH AA  G+ ++ KYLLE   +D++  DEDG T L  AA  G+ E  K L
Sbjct: 2   RTALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 64.3 bits (156), Expect = 3e-11
 Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 6/214 (2%)

Query: 53  DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGH-TETAKYLFE 111
           D  K   LH A++          L E   DV+ ++  GETPL   A+ G+ TE  + L  
Sbjct: 270 DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIM 329

Query: 112 HGANPTIPSNLGATALHHSAGIG-NIELLTYLLSKGAEVDSESDA-GTPLIWAAGHGQQE 169
            GA+      L  T LH ++ +  N +++  LL  GA V++      TP+ +AA      
Sbjct: 330 LGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVV 389

Query: 170 AVKVLLEHHANPNAETEDNITPLLSAV-AAGSLTCLDLLIQAGANANIVAGG-ATPLHIA 227
            +  LL++ A+  A ++   T L  A+        +  LI  GAN N      +TPLH A
Sbjct: 390 IINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA 449

Query: 228 ADIG-STEIIKCLLKAGADPNVTDEDGQKPIQVA 260
                  ++I+ LL  GAD N  +   Q P+ +A
Sbjct: 450 CKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA 483

Length = 682

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 63.4 bits (154), Expect = 8e-11
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 10/101 (9%)

Query: 182 NAETEDNITP---------LLSAVAAGSLTCLDLLIQAGANANIVA-GGATPLHIAADIG 231
           N  TE+ I P         L    A+G      +L+  GA+ N     G TPLHIA   G
Sbjct: 67  NLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANG 126

Query: 232 STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             ++++ LL+ GADP + D+DG+ P+++A   G RE V++L
Sbjct: 127 HVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 14/205 (6%)

Query: 82  DVDTQDEDGETPL---LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN-IE 137
           DV+ + E G+TPL   LH + +   +  + L E GA+   P   G T LH        ++
Sbjct: 39  DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD 98

Query: 138 LLTYLLSKGAEVDSESDAG-TPL-IWAAGHGQQEAV-KVLLEHHANPNAETEDNITPL-- 192
           ++  L+  GA+V+++   G TPL ++ +G      V ++LL   A+ NA     +TPL  
Sbjct: 99  VIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV 158

Query: 193 -LSAVAAGSLTCLDLLIQAGAN-ANIVAGGATPLHIAADI--GSTEIIKCLLKAGADPNV 248
            L +  A ++  L LLI AGA+   +     + LH           I++ L++AG DP  
Sbjct: 159 LLKSRNA-NVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAA 217

Query: 249 TDEDGQKPIQVAAARGNREAVEILF 273
           TD  G  P+   A   + +   +L 
Sbjct: 218 TDMLGNTPLHSMATGSSCKRSLVLP 242

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 23/52 (44%), Positives = 27/52 (51%)

Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
           T L  AA  G  E  KYL E G +       G TALH +A  GN+E+L  LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 19/121 (15%)

Query: 49  ADIKDANKRG--ALHFAAR--EGKTDVCKYLLE---------------ELKLDVDTQDED 89
           A++   N  G   LH      +    + K L++                  + ++ +D  
Sbjct: 132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVY 191

Query: 90  GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
           G TPL +A    + E  KYL + GANP + +  G T LH +    N E+   LL+ G  +
Sbjct: 192 GFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI 251

Query: 150 D 150
            
Sbjct: 252 K 252

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 57/246 (23%), Positives = 86/246 (34%), Gaps = 50/246 (20%)

Query: 49  ADI--KDANKRGALHFAAR--EGKTDVCKYLLEELKLDVDTQDEDGETPL--LHAARQGH 102
           AD+  KD   R  LH           V + LL     DV+  D  G TPL  L  +R  +
Sbjct: 108 ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR-KGADVNALDLYGMTPLAVLLKSRNAN 166

Query: 103 TETAKYLFEHGAN-----------------------------------PTIPSNLGATAL 127
            E  + L + GA+                                   P     LG T L
Sbjct: 167 VELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPL 226

Query: 128 HHSAGIGNIE--LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE 184
           H  A   + +  L+  LL  G  +++ +  G TPL +AA      A + L+   A+ NA 
Sbjct: 227 HSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAV 286

Query: 185 TEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG---GATPLHIAADIGSTEI--IKCL 239
           + D  TPL   V   +   +   +    +A  VA     A+         +T +   K +
Sbjct: 287 SSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAATLNTASVAGGDIPSDATRLCVAKVV 346

Query: 240 LKAGAD 245
           L+    
Sbjct: 347 LRGAFS 352

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.4 bits (135), Expect = 4e-09
 Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 9/102 (8%)

Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAA-----DIGSTEI 235
            A   D   PL SA + G    + LL+ +GA+ N   A G TPLH+AA       G+ E+
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126

Query: 236 IKCLLKAGA---DPNVTDEDGQKPIQVAAARGNREAVEILFP 274
            K LL+AGA     N+ DEDG  P+  AA  G+ + VE+L  
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLE 168

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 57.4 bits (138), Expect = 7e-09
 Identities = 77/262 (29%), Positives = 110/262 (41%), Gaps = 30/262 (11%)

Query: 11  VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTD 70
           ++ER+QQ          D L  IA+ L + G  +     + KD      +H+AA  G   
Sbjct: 149 IKERIQQ----------DELL-IAEMLLEGGADV-----NAKDIYCITPIHYAAERGNAK 192

Query: 71  VCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130
           +   LL     DV+    D  + L  A    + +T K + ++       SN+    L   
Sbjct: 193 MVNLLLS-YGADVNIIALDDLSVLECAVDSKNIDTIKAIIDN------RSNINKNDLSLL 245

Query: 131 AGIGNIELLTYLL--SKGAEVDSESD-AGTPLIWAA-GHGQQEAVKVLLEHHANPNAETE 186
             I N +L T LL    G  V+S  D   TPL  A+        V  LLE  A+ NA+  
Sbjct: 246 KAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNI 305

Query: 187 DNITPLLSAVAAGSLT-CLDLLIQAGANANIVAG-GATPLHIAADIG-STEIIKCLLKAG 243
              TPL      G  T  +  LI  GA+ N       TPLH A+ +  + +I+  LL+ G
Sbjct: 306 KGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELG 365

Query: 244 ADPNVTDEDGQKPIQVAAARGN 265
           A+ N  D   + PI  AA R N
Sbjct: 366 ANVNARDYCDKTPIHYAAVRNN 387

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 7/205 (3%)

Query: 75  LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134
           +L E   DV+ +D    TP+ +AA +G+ +    L  +GA+  I +    + L  +    
Sbjct: 163 MLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSK 222

Query: 135 NIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLS 194
           NI+ +  ++   + ++        L+ A  +   E   +L +   + N+  +   TPL  
Sbjct: 223 NIDTIKAIIDNRSNINKND---LSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHH 279

Query: 195 AVAAGSLTCL-DLLIQAGANANIV-AGGATPLHIAADIG-STEIIKCLLKAGADPNVTDE 251
           A  A SL+ L   L++ GA+ N     G TPL++ A  G  TE I+ L+  GAD N  D 
Sbjct: 280 ASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADR 339

Query: 252 DGQKPI-QVAAARGNREAVEILFPL 275
               P+ Q +    N++ V  L  L
Sbjct: 340 LYITPLHQASTLDRNKDIVITLLEL 364

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 16/234 (6%)

Query: 26  NLDLLKKIAKQLDDQGKGLSKTV-------ADIKDANKRG--ALHFAAREGKTDVCKYLL 76
           ++D  K        Q   LS+ V       AD+   N +G   L+  A+ G        L
Sbjct: 268 SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTL 327

Query: 77  EELKLDVDTQDEDGETPLLHAAR-QGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
             L  DV+  D    TPL  A+    + +    L E GAN         T +H++A   N
Sbjct: 328 IMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNN 387

Query: 136 IELLTYLLSKGAEVDSESDA-GTPLIWA-AGHGQQEAVKVLLEHHANPNAETEDNITPLL 193
           + ++  LL  GA++++ S   GT L +A  G     +VK L++  AN N++ +D  TPL 
Sbjct: 388 VVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLH 447

Query: 194 SAVAAG-SLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGAD 245
            A      L  +++L+  GA+ N +      PL IA  +    I+  LL  GA+
Sbjct: 448 YACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA--LEYHGIVNILLHYGAE 499

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           T LH AA  G  E++K LL+ G D N TDEDG   + +AA  GN E +++L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 22/52 (42%), Positives = 26/52 (50%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI 208
           T L  AA  G+ E VK LLE   + N   ED  T L  A   G+L  L LL+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
           G TPLH+AA  G  E++K LL+AGAD N  D+
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 75  LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128
           LLE   +D++  D +G TPL  AA+ G  E  ++L + G +  +  + G TAL 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 50.8 bits (121), Expect = 5e-07
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 151 SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETED-NITPLLSAVAAGSLTCLDLLIQ 209
           SE+    PLI+A      +A K+L+ + A+ N   E+  ITPL  +V  G L CL++L+ 
Sbjct: 66  SENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLS 125

Query: 210 AGANANIVAGG-ATPLHIAADI 230
            GA+ NI      TP+ +A  I
Sbjct: 126 YGADINIQTNDMVTPIELALMI 147

Length = 300

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 50.8 bits (121), Expect = 6e-07
 Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 10/177 (5%)

Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAGHGQ 167
           L   G +P    + G   LH ++ I N  ++  LL+ GA+ ++ +    TPL + +G   
Sbjct: 58  LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117

Query: 168 Q--EAVKVLLEHHAN-PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV---AGGA 221
           +  E + +L+++ A   N+  E+   PLL A    S      ++  G  A IV       
Sbjct: 118 EVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNH 176

Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR--GNREAVEILFPLT 276
              H+ +D      I  ++K G  P+  D DG  P+ +  ++   N + + +L P T
Sbjct: 177 IHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPST 233

Length = 446

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 176 EHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE 234
             H +PN  +      LL+  + G+   L+ L++A  + +I  + G TPLHIAA  G  +
Sbjct: 518 GEHDDPNMASN-----LLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYED 572

Query: 235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS-EDPSI 282
            +  LLK   + ++ D +G   +  A +  + +   IL+   S  DP  
Sbjct: 573 CVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHA 621

Length = 823

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 207 LIQAGANANIVAG--GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
           L++ G          G TPLH+AA  G+ E+++ LLK G D N+ D DG   + +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 190 TPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLL 240
           T L  A  +G L  +  L++ G + N     G T LHIAA+ G+ E++K LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 16/33 (48%), Positives = 17/33 (51%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSN 121
           DG TPL  AAR GH E  K L E GA+      
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 166 GQQEAVKVLLEHHAN-PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN-IVAGGATP 223
           G  EA++ ++++  N  N   ++  TPL+ A+ +G    ++L I+ GA+ N I      P
Sbjct: 12  GDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHP 71

Query: 224 LHIAADIGSTEIIKCLLKAGADPNV 248
           L  A  IG+ +IIK L+  G D ++
Sbjct: 72  LLTAIKIGAHDIIKLLIDNGVDTSI 96

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 40/182 (21%), Positives = 64/182 (35%), Gaps = 3/182 (1%)

Query: 93  PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE 152
           PL  A    + +  K L   G N   P +   T LH      N   +  ++    +  S 
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINK-CSV 98

Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA 212
                 +  A  +   E  K++L +        +       S           LL+  GA
Sbjct: 99  FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGA 158

Query: 213 NANIVA--GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
           + N+     G T LH A +     + + LL  GA+ N+ D+    P+  A    N+  V 
Sbjct: 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVH 218

Query: 271 IL 272
           IL
Sbjct: 219 IL 220

Length = 477

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 45/215 (20%), Positives = 71/215 (33%), Gaps = 43/215 (20%)

Query: 57  RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQG-HTETAKYLFEHGAN 115
           +  L  A R     V + L E  KL+++  D  G + L  AA +  + E  + L      
Sbjct: 19  KAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCR 78

Query: 116 PTIPSNLGATALHHSA--GIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKV 173
             +    G T LH  +   +  +E +   L        +S                    
Sbjct: 79  GAV----GDTLLHAISLEYVDAVEAILLHLLA---AFRKSGPLELANDQYT--------- 122

Query: 174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGA------------ 221
                   +  T   IT L  A    +   + LL++ GA+    A G             
Sbjct: 123 --------SEFTPG-ITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFY 173

Query: 222 ---TPLHIAADIGSTEIIKCLLKAGADPNVTDEDG 253
              +PL+ AA +GS  I+  L +  AD    D  G
Sbjct: 174 HGESPLNAAACLGSPSIVALLSEDPADILTADSLG 208

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNV 248
           G TPLH+AA+ G+ E++K LL  GAD N 
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 26/146 (17%)

Query: 15  VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKY 74
           V+ F+N     N++ L       ++    L   +++IKD                D+ K 
Sbjct: 54  VKLFINLG--ANVNGLD------NEYSTPLCTILSNIKDYKH-----------MLDIVKI 94

Query: 75  LLEELKLDVDTQDEDGETP---LLHAARQGHTETAKYLFEHGANPTIPSNLGATALH--- 128
           L+E    D++ ++ DGETP   LL      + E   ++ E+GA+ T+    G T L    
Sbjct: 95  LIEN-GADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYL 153

Query: 129 HSAGIGNIELLTYLLSKGAEVDSESD 154
            S    +IE++  LL KG ++++ ++
Sbjct: 154 QSNHHIDIEIIKLLLEKGVDINTHNN 179

Length = 489

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 125 TALHHSAGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLL 175
           TALH +A  G +EL+ YLL KG +++ ++ D  T L  AA +G  E +K+LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 182 NAETEDNITPLLSAVAA--GSLTCLDLLIQAGANAN--IVAGGATPLHIAADIG---STE 234
           N   +   TP+ S +     ++  L  LI+ GA+ N        + LH           E
Sbjct: 45  NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPE 104

Query: 235 IIKCLLKAGADPNVTDEDGQKPIQV 259
           I+K L+ +G+     DEDG+  + +
Sbjct: 105 ILKILIDSGSSITEEDEDGKNLLHM 129

Length = 209

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 205 DLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
           DLL   G   +     +  L +A+  G+  +++ LLKA  DP++ D  G+ P+ +AA++G
Sbjct: 511 DLLGDNGGEHDDPNMASNLLTVAS-TGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKG 569

Query: 265 NREAVEIL 272
             + V +L
Sbjct: 570 YEDCVLVL 577

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETE 186
           TPL  AA +G  E VK+LLE  A+ NA  +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 167 QQEAVKVLLEHHANPNAETEDNI-TPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPL 224
           + E  K+LL + A+ N +      T L  A         +LL+  GAN NI      +PL
Sbjct: 146 EAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL 205

Query: 225 HIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           H A    +  I+  LL+ GA  +  D+ G  P+ ++   
Sbjct: 206 HHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGY 244

Length = 477

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNV 248
           G TPLH+AA  G+ E++K LL+ GAD N 
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTI 118
           DG TPL  AAR G+ E  K L EHGA+   
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 142 LLSKGAEV--DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
           LL  G      ++ +  TPL  AA +G  E V+ LL+   + N    D +T L
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTI 118
           DG TPL  AA  G+ E  K L + GA+   
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 6/98 (6%)

Query: 169 EAVKVLLEHHANPNAETEDN----ITPLLSAVAAGSLTCLDLLIQAGANANIVAGGA--T 222
           + +  +L+  A+P A    +      PL+ A+   +     LLI+ GA+ N  A  A  T
Sbjct: 47  DIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT 106

Query: 223 PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
           PL+I+   G  + ++ LL  GAD N+   D   PI++A
Sbjct: 107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELA 144

Length = 300

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 190 TPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVT 249
           + L  A+A  ++  +  L+ AGA  N++     PLH AA +  T+I+K LL +G D +  
Sbjct: 32  SALYYAIADNNVRLVCTLLNAGALKNLLEN-EFPLHQAATLEDTKIVKILLFSGMDDSQF 90

Query: 250 DEDGQKPIQVAAARGNREAVEIL 272
           D+ G   +  A   GN + V++ 
Sbjct: 91  DDKGNTALYYAVDSGNMQTVKLF 113

Length = 284

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL---IQAGANANIVAG-GATPLHI 226
           VK+L+E+ A+ N +  D  TPL   ++ G +  L++L   I+ GA+  ++   G T L +
Sbjct: 92  VKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQV 151

Query: 227 AADIGST---EIIKCLLKAGADPNV 248
                     EIIK LL+ G D N 
Sbjct: 152 YLQSNHHIDIEIIKLLLEKGVDINT 176

Length = 489

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD-SE 152
           L   A  G    A+ L   GA+P      G T LH +   G+++++  LL  GA+    +
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145

Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEH 177
            D  TPL  A  +G +E V++L  H
Sbjct: 146 KDGKTPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 82  DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
           D + +D DG TPL  A   GH +  + L E GA+PT+    G T L   A       +  
Sbjct: 107 DPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPL-ELAEENGFREVVQ 165

Query: 142 LLSKGAEVDSESDAGTP 158
           LLS+ ++   E  A   
Sbjct: 166 LLSRHSQCHFELGANAK 182

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESD 154
           G T LH +A  G++E++  LL  GA+V++   
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 48 VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHA 97
            +  D N    LH AA+ G  ++ ++LL+   +D++ +D DG T L  A
Sbjct: 8  DLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 25/98 (25%)

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVT----------DED----GQKPIQVAAARGN 265
           G T LH+AA   + EI+K LL+ GA                 D    G+ P+  AA  G+
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS 187

Query: 266 REAVEILFPLTSEDPSIPK------WTVDGILEYMQSE 297
              V     L SEDP+          T+  +L  M++E
Sbjct: 188 PSIVA----LLSEDPADILTADSLGNTLLHLLV-MENE 220

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.2 bits (79), Expect = 0.004
 Identities = 16/27 (59%), Positives = 19/27 (70%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNA 183
           TPL  AA +G  E VK+LLEH A+ NA
Sbjct: 4   TPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|238431 cd00851, MTH1175, This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 82  DVDTQDEDG----ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH--HSAGI 133
           DV+T         E P  HA      + A++L + G +  I   +G  AL+   +AGI
Sbjct: 28  DVETGKIKNVEVIENPAAHATGGAGGKAAEFLADEGVDVVIVGGIGPRALNKLRNAGI 85

This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea). Length = 103

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 13/124 (10%)

Query: 136 IELLTYLLSKGAEVDSESDAGTPLI------WAAGHGQQEAVKVLLEHHANPNAETEDNI 189
           I+++  L+  GA+V+ +    TPL           +  ++ VK+LL+  A+ N +T + +
Sbjct: 50  IKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGV 109

Query: 190 TPLLSAVAAGSLTCLD---LLIQAGANANIVAG--GATPLHIAAD--IGSTEIIKCLLKA 242
           +P++  +   ++   D    L+  G N N V    G   LH+  +      ++IK LL  
Sbjct: 110 SPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF 169

Query: 243 GADP 246
           G + 
Sbjct: 170 GVNL 173

Length = 494

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.97
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.96
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.96
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.95
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.93
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.87
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.83
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.78
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.74
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.74
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.65
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.61
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.56
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.55
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.55
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.51
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.48
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.46
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.46
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.43
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.08
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.04
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.97
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.92
PF13606	30	Ank_3: Ankyrin repeat	98.91
PF13606	30	Ank_3: Ankyrin repeat	98.87
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.84
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.83
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.81
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.8
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.78
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.77
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.7
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.69
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.66
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.59
KOG0522	560	consensus Ankyrin repeat protein [General function	98.57
KOG0522	560	consensus Ankyrin repeat protein [General function	98.46
KOG0511	516	consensus Ankyrin repeat protein [General function	98.41
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.25
KOG2384	223	consensus Major histocompatibility complex protein	98.18
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.15
KOG2384	223	consensus Major histocompatibility complex protein	98.09
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.04
KOG2505	591	consensus Ankyrin repeat protein [General function	98.02
KOG0511	516	consensus Ankyrin repeat protein [General function	97.91
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.85
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.45
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.15
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.09
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.07
KOG0553	304	consensus TPR repeat-containing protein [General f	96.78
KOG2505	591	consensus Ankyrin repeat protein [General function	96.63
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.44
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.44
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.19
KOG4648	536	consensus Uncharacterized conserved protein, conta	94.29
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.29
KOG0547	606	consensus Translocase of outer mitochondrial membr	92.93
KOG4234	271	consensus TPR repeat-containing protein [General f	88.35
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	86.99
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	84.26

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-42  Score=331.19  Aligned_cols=259  Identities=29%  Similarity=0.464  Sum_probs=244.1

Q ss_pred             hhhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHH-----HHHcCCHHHHHHHHHhCCCCCc
Q 016683           10 AVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHF-----AAREGKTDVCKYLLEELKLDVD   84 (384)
Q Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~-----A~~~g~~~~v~~Ll~~~~~~~~   84 (384)
                      ......++||.|+..|+.++|++|++.    |.++     +..+..|.||||+     |+..|+.+++++|++. |++++
T Consensus        31 ~~~~~~t~L~~A~~~~~~~ivk~Ll~~----g~~~-----~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~-ga~i~  100 (480)
T PHA03100         31 SYKKPVLPLYLAKEARNIDVVKILLDN----GADI-----NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GANVN  100 (480)
T ss_pred             hhcccchhhhhhhccCCHHHHHHHHHc----CCCC-----CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC-CCCCC
Confidence            345677899999999999999999987    5444     4567789999999     9999999999999997 99999


Q ss_pred             CCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCC-CHh
Q 016683           85 TQDEDGETPLLHAA--RQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG--NIELLTYLLSKGAEVDSESDAG-TPL  159 (384)
Q Consensus        85 ~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~-~~l  159 (384)
                      ..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++..+..+ |||
T Consensus       101 ~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL  180 (480)
T PHA03100        101 APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPL  180 (480)
T ss_pred             CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHH
Confidence            99999999999999  999999999999999999999999999999999999  9999999999999998777655 999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCC------CCHHHHHHHcCC--HHHHHHHHHcCCCcccc-CCCchHHHHHHhh
Q 016683          160 IWAAGHGQQEAVKVLLEHHANPNAETEDN------ITPLLSAVAAGS--LTCLDLLIQAGANANIV-AGGATPLHIAADI  230 (384)
Q Consensus       160 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g------~t~l~~A~~~~~--~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~  230 (384)
                      |+|+..|+.+++++|+++|++++..+..|      .||||.|+..++  .+++++|+++|++++.. ..|.||||+|+..
T Consensus       181 ~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~  260 (480)
T PHA03100        181 HIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYN  260 (480)
T ss_pred             HHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            99999999999999999999999999888      899999999999  99999999999999987 7899999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 016683          231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       231 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                      |+.+++++|++.|++++.+|..|.||+++|+..++.+++++|+++++.
T Consensus       261 ~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~  308 (480)
T PHA03100        261 NNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS  308 (480)
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999998874

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6e-41  Score=317.17  Aligned_cols=267  Identities=26%  Similarity=0.375  Sum_probs=235.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHH
Q 016683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL   95 (384)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   95 (384)
                      ..|..|+..||++.|+++++.        .+...+..+..|.||||.|+..|+.++|++|++. |++++..+..|.||||
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~--------~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~-Ga~~n~~~~~~~t~L~   73 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKN--------KGNCINISVDETTTPLIDAIRSGDAKIVELFIKH-GADINHINTKIPHPLL   73 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHc--------CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHH
Confidence            368899999999999999976        1222356677899999999999999999999987 9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCC-----------------------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 016683           96 HAARQGHTETAKYLFEHGA-----------------------NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE  152 (384)
Q Consensus        96 ~A~~~g~~~~v~~Ll~~g~-----------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  152 (384)
                      .|+..|+.+++++|+++|+                       +++..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus        74 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~  153 (434)
T PHA02874         74 TAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE  153 (434)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCc
Confidence            9999999999999988765                       45677889999999999999999999999999999887


Q ss_pred             CCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhh
Q 016683          153 SDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADI  230 (384)
Q Consensus       153 ~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~  230 (384)
                      +..+ ||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.. ..|.||||+|+..
T Consensus       154 d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~  233 (434)
T PHA02874        154 DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH  233 (434)
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHC
Confidence            7655 9999999999999999999999999999999999999999999999999999999998877 7899999999998


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHhhcCCCCCCCCCCCCchhhHHHHH
Q 016683          231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG-NREAVEILFPLTSEDPSIPKWTVDGILEYM  294 (384)
Q Consensus       231 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  294 (384)
                      +. +.+++|+ .|++++.+|..|+||||+|+..+ +.+++++|+.++... ...+..+.+.+..+
T Consensus       234 ~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~-n~~d~~g~TpL~~A  295 (434)
T PHA02874        234 NR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADI-SIKDNKGENPIDTA  295 (434)
T ss_pred             Ch-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCC-CCCCCCCCCHHHHH
Confidence            65 5677776 68999999999999999999876 789999999987654 33344444554444

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.7e-41  Score=316.86  Aligned_cols=257  Identities=27%  Similarity=0.405  Sum_probs=231.1

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHh------------
Q 016683           11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE------------   78 (384)
Q Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~------------   78 (384)
                      ..++.++||.|+..|+.++|++|++.    |.++     +..+..|.||||.|+..|+.+++++|++.            
T Consensus        32 ~~~~~tpL~~A~~~g~~~iv~~Ll~~----Ga~~-----n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~  102 (434)
T PHA02874         32 VDETTTPLIDAIRSGDAKIVELFIKH----GADI-----NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCI  102 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC----CCCC-----CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccC
Confidence            34567899999999999999999987    5443     45677899999999999999999999875            


Q ss_pred             ----------CCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 016683           79 ----------LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE  148 (384)
Q Consensus        79 ----------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  148 (384)
                                .|++++.++..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|++
T Consensus       103 ~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~  182 (434)
T PHA02874        103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY  182 (434)
T ss_pred             CHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC
Confidence                      2456778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHH
Q 016683          149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHI  226 (384)
Q Consensus       149 ~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~  226 (384)
                      ++..+..+ ||||+|+..|+.+++++|++.|++++..+..|.||||.|+..+. +.+++|+ .|++++.. ..|+||||+
T Consensus       183 ~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~  260 (434)
T PHA02874        183 ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHH  260 (434)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHH
Confidence            98776655 99999999999999999999999999999999999999999875 5666666 58888877 789999999


Q ss_pred             HHhhC-CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHhhcCCCCC
Q 016683          227 AADIG-STEIIKCLLKAGADPNVTDEDGQKPIQVAAARG-NREAVEILFPLTSE  278 (384)
Q Consensus       227 A~~~~-~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~  278 (384)
                      |+..+ +.+++++|+++|++++.+|..|.||||+|+..+ +.++++.|+.....
T Consensus       261 A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~  314 (434)
T PHA02874        261 AINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVL  314 (434)
T ss_pred             HHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCc
Confidence            99875 899999999999999999999999999999987 67888998876643

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-40  Score=319.03  Aligned_cols=248  Identities=26%  Similarity=0.313  Sum_probs=121.7

Q ss_pred             HHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcC---CHHHHHHHHHhCCCCCcCCCCCCCcHHH
Q 016683           19 LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG---KTDVCKYLLEELKLDVDTQDEDGETPLL   95 (384)
Q Consensus        19 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   95 (384)
                      +.++..+++++|++|++.    |.++     +.++..|.||||+|+..|   +.+++++|++. |+++|.++..|.||||
T Consensus        19 ~~~~~~~~~~~v~~Ll~~----ga~v-----n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-Gadin~~~~~g~TpLh   88 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAA----GADV-----NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GADVNAPERCGFTPLH   88 (471)
T ss_pred             HHcCCCCCHHHHHHHHHc----CCCc-----ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC-CCCCCCCCCCCCCHHH
Confidence            444455555555555544    3222     334444555555555554   55555555544 5555555555555555


Q ss_pred             HHHHcC-CHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcC--CHH
Q 016683           96 HAARQG-HTETAKYLFEHGANPTIPSNLGATALHHSA--GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG--QQE  169 (384)
Q Consensus        96 ~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~--~~~  169 (384)
                      +|+..| +.+++++|+++|++++..|..|.||||+|+  ..++.+++++|+++|++++..+..+ ||||+|+..+  +.+
T Consensus        89 ~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~  168 (471)
T PHA03095         89 LYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVE  168 (471)
T ss_pred             HHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHH
Confidence            555555 355555555555555555555555555555  2334455555555555554433333 5555544433  344


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCH--HHHHHHHHCCC
Q 016683          170 AVKVLLEHHANPNAETEDNITPLLSAVAA--GSLTCLDLLIQAGANANIV-AGGATPLHIAADIGST--EIIKCLLKAGA  244 (384)
Q Consensus       170 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~--~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~--~~v~~Ll~~ga  244 (384)
                      ++++|++.|++++..+..|.||||.++..  ++.++++.|++.|++++.. ..|+||||+|+..|+.  .+++.|++.|+
T Consensus       169 iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~  248 (471)
T PHA03095        169 LLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI  248 (471)
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCC
Confidence            55555555555444444455555544432  3444444555555444444 4444444444444432  34444444444


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 016683          245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (384)
Q Consensus       245 ~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (384)
                      +++.+|..|+||||+|+..|+.+++++|++.+
T Consensus       249 din~~d~~g~TpLh~A~~~~~~~~v~~LL~~g  280 (471)
T PHA03095        249 SINARNRYGQTPLHYAAVFNNPRACRRLIALG  280 (471)
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            44444444444444444444444444444443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-40  Score=291.09  Aligned_cols=233  Identities=17%  Similarity=0.170  Sum_probs=208.0

Q ss_pred             HcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCC
Q 016683           23 CTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGH  102 (384)
Q Consensus        23 ~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~  102 (384)
                      ..++.+++++|++.    +.       +.+|.+|.||||+|+..|+.+++++|++. |++++..+  |.||||+|+..|+
T Consensus         8 ~~~~~~~~~~Lis~----~a-------~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~~n~~d--~~TpLh~Aa~~g~   73 (284)
T PHA02791          8 TWKSKQLKSFLSSK----DA-------FKADVHGHSALYYAIADNNVRLVCTLLNA-GALKNLLE--NEFPLHQAATLED   73 (284)
T ss_pred             ccCHHHHHHHHHhC----CC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHHC-cCCCcCCC--CCCHHHHHHHCCC
Confidence            35778889999886    32       34688999999999999999999999997 88888764  7899999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC--CHhHHHHHcCCHHHHHHHHhCCCC
Q 016683          103 TETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHAN  180 (384)
Q Consensus       103 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--~~l~~A~~~~~~~~~~~Ll~~~~~  180 (384)
                      .++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..+  ||||+|+..|+.+++++|++++.+
T Consensus        74 ~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~  153 (284)
T PHA02791         74 TKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS  153 (284)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc
Confidence            999999999999999999999999999999999999999999999998766543  899999999999999999998764


Q ss_pred             CCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchH-HHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q 016683          181 PNAET-EDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATP-LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPI  257 (384)
Q Consensus       181 ~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~-L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  257 (384)
                      .  .+ ..|.||||+|+..|+.+++++|+++|++++.. ..|.|| ||+|+..|+.+++++|+++|++++.+|..| ++|
T Consensus       154 ~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l  230 (284)
T PHA02791        154 T--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL  230 (284)
T ss_pred             c--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC
Confidence            3  23 25899999999999999999999999999987 567776 999999999999999999999999999854 666


Q ss_pred             HHHHHcCCHHHHHhhcCCCCC
Q 016683          258 QVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       258 ~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                            ++.|++++|+++..+
T Consensus       231 ------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        231 ------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             ------CCHHHHHHHHHhhhh
Confidence                  788999999987654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.5e-40  Score=314.39  Aligned_cols=256  Identities=24%  Similarity=0.276  Sum_probs=235.7

Q ss_pred             HHHHHHHHHHHcC---ChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcC-CHHHHHHHHHhCCCCCcCCCC
Q 016683           13 ERVQQFLNAACTG---NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG-KTDVCKYLLEELKLDVDTQDE   88 (384)
Q Consensus        13 ~~~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~   88 (384)
                      .+.++||.|+..|   +.++++.|++.    |.++     +.++..|.||||+|+..| +.+++++|++. |++++.++.
T Consensus        46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~----Gadi-----n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~-ga~in~~~~  115 (471)
T PHA03095         46 YGKTPLHLYLHYSSEKVKDIVRLLLEA----GADV-----NAPERCGFTPLHLYLYNATTLDVIKLLIKA-GADVNAKDK  115 (471)
T ss_pred             CCCCHHHHHHHhcCCChHHHHHHHHHC----CCCC-----CCCCCCCCCHHHHHHHcCCcHHHHHHHHHc-CCCCCCCCC
Confidence            4568999999999   99999999987    5554     677889999999999999 59999999998 999999999


Q ss_pred             CCCcHHHHHH--HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCC-CHhHHHH
Q 016683           89 DGETPLLHAA--RQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG--NIELLTYLLSKGAEVDSESDAG-TPLIWAA  163 (384)
Q Consensus        89 ~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~  163 (384)
                      .|.||||+|+  ..++.+++++|+++|++++..|..|.||||+|+..+  +.+++++|+++|++++..+..+ ||||+++
T Consensus       116 ~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~  195 (471)
T PHA03095        116 VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHL  195 (471)
T ss_pred             CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            9999999999  556899999999999999999999999999998876  6899999999999987765544 9999998


Q ss_pred             Hc--CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHH
Q 016683          164 GH--GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL--TCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKC  238 (384)
Q Consensus       164 ~~--~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~--~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~  238 (384)
                      ..  ++.++++.|++.|++++.+|..|.||||+|+..|+.  .+++.|++.|++++.. ..|+||||+|+..|+.+++++
T Consensus       196 ~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~  275 (471)
T PHA03095        196 QSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRR  275 (471)
T ss_pred             HHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            75  788999999999999999999999999999999975  6889999999999988 789999999999999999999


Q ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 016683          239 LLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       239 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                      |++.|++++.+|..|.||||+|+.+|+.+++++|++.++.
T Consensus       276 LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~  315 (471)
T PHA03095        276 LIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPS  315 (471)
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999987653

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3e-39  Score=303.47  Aligned_cols=280  Identities=16%  Similarity=0.153  Sum_probs=227.7

Q ss_pred             HHHHHHH--HcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcH
Q 016683           16 QQFLNAA--CTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETP   93 (384)
Q Consensus        16 ~~l~~A~--~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   93 (384)
                      ..||.++  ..++.++++.|++.    |.++     +.+|.+|.||||+|+..|+.+++++|++. |++++.+|..|.||
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~----Gadv-----n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~-GAdin~~d~~g~Tp  108 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHR----GYSP-----NETDDDGNYPLHIASKINNNRIVAMLLTH-GADPNACDKQHKTP  108 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHC----cCCC-----CccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCH
Confidence            3455444  33456677777765    4433     56788999999999999999999999997 99999999999999


Q ss_pred             HHHHHHcC--CHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcC--C
Q 016683           94 LLHAARQG--HTETAKYLFEHGANPTI-PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG--Q  167 (384)
Q Consensus        94 L~~A~~~g--~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~--~  167 (384)
                      ||+|+..+  ..+++++|+++|++++. .|..|.|||| |+..++.+++++|++.|++++..+..+ ||||+|+..+  +
T Consensus       109 Lh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~  187 (446)
T PHA02946        109 LYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPK  187 (446)
T ss_pred             HHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCC
Confidence            99998876  47899999999999985 6889999997 666789999999999999998877665 9999987755  4


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCC-HHHHHHHHHCC
Q 016683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAG--SLTCLDLLIQAGANANIV-AGGATPLHIAADIGS-TEIIKCLLKAG  243 (384)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~--~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~-~~~v~~Ll~~g  243 (384)
                      .+++++|++.|++++.+|..|.||||+|+..+  +.+++++|+. |++++.. ..|.||||+|+..++ .+++++|+++|
T Consensus       188 ~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g  266 (446)
T PHA02946        188 ASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTS  266 (446)
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCC
Confidence            68999999999999999999999999999876  7899999885 8998877 789999999999988 58999999988


Q ss_pred             CCCCC--------------------C-CCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhH
Q 016683          244 ADPNV--------------------T-DEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQL  302 (384)
Q Consensus       244 a~~~~--------------------~-~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (384)
                      ++++.                    . +..|.||||+|+.+|+.++|++|++++..          +.+++..+......
T Consensus       267 ~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~~----------~~t~L~~A~~~~~~  336 (446)
T PHA02946        267 NVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDII----------CEDAMYYAVLSEYE  336 (446)
T ss_pred             CCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCCc----------cccHHHHHHHhCHH
Confidence            75321                    1 13577999999999999999999987532          12344455566677


Q ss_pred             HHHHhhhhcCCCCCC
Q 016683          303 EETRNLKENNAPKDK  317 (384)
Q Consensus       303 ~~~~~l~~~~~~~~~  317 (384)
                      +....+...++....
T Consensus       337 ~~v~~Ll~~ga~~n~  351 (446)
T PHA02946        337 TMVDYLLFNHFSVDS  351 (446)
T ss_pred             HHHHHHHHCCCCCCC
Confidence            778888888777654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.4e-40  Score=313.93  Aligned_cols=279  Identities=27%  Similarity=0.336  Sum_probs=246.0

Q ss_pred             CChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHH-----HHH
Q 016683           25 GNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLH-----AAR   99 (384)
Q Consensus        25 g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~-----A~~   99 (384)
                      ....+++++++.    +     .+.+..+..+.||||.|+..|+.++|++|++. |++++..+..|.||||+     |+.
T Consensus        13 ~~~~~~~~~~~~----~-----~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~-g~~~~~~~~~~~t~L~~~~~~~a~~   82 (480)
T PHA03100         13 IKVKNIKYIIME----D-----DLNDYSYKKPVLPLYLAKEARNIDVVKILLDN-GADINSSTKNNSTPLHYLSNIKYNL   82 (480)
T ss_pred             HHHHHHHHHHhc----C-----ccchhhhcccchhhhhhhccCCHHHHHHHHHc-CCCCCCccccCcCHHHHHHHHHHHh
Confidence            344566666653    1     33456688899999999999999999999998 99999999999999999     999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcC--CHHHHHHH
Q 016683          100 QGHTETAKYLFEHGANPTIPSNLGATALHHSA--GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG--QQEAVKVL  174 (384)
Q Consensus       100 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~--~~~~~~~L  174 (384)
                      .|+.+++++|+++|++++..+..|.||||+|+  ..|+.+++++|+++|++++..+..+ ||||+|+..+  +.+++++|
T Consensus        83 ~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~L  162 (480)
T PHA03100         83 TDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLL  162 (480)
T ss_pred             hchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHH
Confidence            99999999999999999999999999999999  9999999999999999998777655 9999999999  99999999


Q ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCC------chHHHHHHhhCC--HHHHHHHHHCCCC
Q 016683          175 LEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGG------ATPLHIAADIGS--TEIIKCLLKAGAD  245 (384)
Q Consensus       175 l~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g------~t~L~~A~~~~~--~~~v~~Ll~~ga~  245 (384)
                      +++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|      .||||.|+..|+  .+++++|++.|++
T Consensus       163 l~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d  242 (480)
T PHA03100        163 IDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVP  242 (480)
T ss_pred             HHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999877 556      899999999999  9999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhHHHHHhhhhcCCCCC
Q 016683          246 PNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKD  316 (384)
Q Consensus       246 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  316 (384)
                      ++.+|..|.||||+|+..|+.+++++|++.+. +....+..+.+..  ..+......+..+.+.+.+++..
T Consensus       243 in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga-d~n~~d~~g~tpl--~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        243 INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA-NPNLVNKYGDTPL--HIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCCcHH--HHHHHhCCHHHHHHHHhcCCCHH
Confidence            99999999999999999999999999999887 4444444444444  44445566677777777766443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=8.4e-40  Score=316.37  Aligned_cols=255  Identities=18%  Similarity=0.221  Sum_probs=166.0

Q ss_pred             HHHHHHHHHH--cCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCC--HHHHHHHHHhCCCCCcCCCCC
Q 016683           14 RVQQFLNAAC--TGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGK--TDVCKYLLEELKLDVDTQDED   89 (384)
Q Consensus        14 ~~~~l~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~   89 (384)
                      +.++||.|+.  .++.+++++|++.    |.++     +.+|..|.||||+|+..|+  .++|++|++. |+++|.++..
T Consensus       177 G~TpLH~A~~n~~~~~eIVklLLe~----GADV-----N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~-GADVN~kD~~  246 (764)
T PHA02716        177 GYGILHAYLGNMYVDIDILEWLCNN----GVNV-----NLQNNHLITPLHTYLITGNVCASVIKKIIEL-GGDMDMKCVN  246 (764)
T ss_pred             CCcHHHHHHHhccCCHHHHHHHHHc----CCCC-----CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCCCCCCCCC
Confidence            4556666543  3566777777765    4333     4556677777777777774  3677777766 7777777777


Q ss_pred             CCcHHHHH-------------------------------------HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 016683           90 GETPLLHA-------------------------------------ARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (384)
Q Consensus        90 g~t~L~~A-------------------------------------~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  132 (384)
                      |+||||.|                                     +..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus       247 G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa  326 (764)
T PHA02716        247 GMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYIL  326 (764)
T ss_pred             CCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHH
Confidence            77777754                                     33456677777777777777777777777776553


Q ss_pred             --cCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHH--------------cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 016683          133 --IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAG--------------HGQQEAVKVLLEHHANPNAETEDNITPLLSA  195 (384)
Q Consensus       133 --~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~--------------~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  195 (384)
                        .++.+++++|+++|++++..+..+ ||||+|+.              .++.+++++|+++|++++..+..|.||||.+
T Consensus       327 ~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y  406 (764)
T PHA02716        327 RHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSY  406 (764)
T ss_pred             HhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHH
Confidence              346677777777777776665544 77777654              2566777777777777777777777777732


Q ss_pred             ----HHcCCHHHHHHHHHcCCC----------------------------------------------------------
Q 016683          196 ----VAAGSLTCLDLLIQAGAN----------------------------------------------------------  213 (384)
Q Consensus       196 ----~~~~~~~~v~~Ll~~g~~----------------------------------------------------------  213 (384)
                          ...++.+++++|++.|+.                                                          
T Consensus       407 ~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~  486 (764)
T PHA02716        407 ICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIE  486 (764)
T ss_pred             HHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHh
Confidence                223556666666654321                                                          


Q ss_pred             ---cccc-CCCchHHHHHHhhCCH-----HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH-----HHHHhhcCCCCC
Q 016683          214 ---ANIV-AGGATPLHIAADIGST-----EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNR-----EAVEILFPLTSE  278 (384)
Q Consensus       214 ---~~~~-~~g~t~L~~A~~~~~~-----~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~-----~~v~~Ll~~~~~  278 (384)
                         ++.. ..|+||||+|+..|+.     +++++|++.|++++.+|..|+||||+|+.+|+.     ++|+.|++.++.
T Consensus       487 ~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~  565 (764)
T PHA02716        487 RYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPN  565 (764)
T ss_pred             hccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCC
Confidence               0111 2467777777777655     344777777777777777777777777777755     777777765543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.2e-39  Score=320.77  Aligned_cols=257  Identities=26%  Similarity=0.327  Sum_probs=207.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHH----------------------------
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAA----------------------------   64 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~----------------------------   64 (384)
                      ...++||.||..|+.++|+.|++.        .+......|..|.||||+|+                            
T Consensus        40 ~~~t~LH~A~~~g~~e~V~~ll~~--------~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  111 (682)
T PHA02876         40 IPFTAIHQALQLRQIDIVEEIIQQ--------NPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASII  111 (682)
T ss_pred             ccchHHHHHHHHHhhhHHHHHHHh--------CcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHH
Confidence            457899999999999999999998        33334556677777777555                            


Q ss_pred             ------------------------------------------HcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCC
Q 016683           65 ------------------------------------------REGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGH  102 (384)
Q Consensus        65 ------------------------------------------~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~  102 (384)
                                                                ..|+.+++++|++. |+++|.+|..|.||||+|+..|+
T Consensus       112 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~-Gadvn~~d~~G~TpLh~Aa~~G~  190 (682)
T PHA02876        112 LNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEG-GADVNAKDIYCITPIHYAAERGN  190 (682)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCC
Confidence                                                      55778889999987 99999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-----------------------------CCCCCC
Q 016683          103 TETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA-----------------------------EVDSES  153 (384)
Q Consensus       103 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~-----------------------------~~~~~~  153 (384)
                      .++|++|+++|++++..+..|.||||+|+..++.+++++|++.+.                             +++..+
T Consensus       191 ~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d  270 (682)
T PHA02876        191 AKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSID  270 (682)
T ss_pred             HHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            999999999999999888888999998888888877776665443                             344433


Q ss_pred             C-CCCHhHHHHHcCCH-HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCcccc-CCCchHHHHHHh
Q 016683          154 D-AGTPLIWAAGHGQQ-EAVKVLLEHHANPNAETEDNITPLLSAVAAG-SLTCLDLLIQAGANANIV-AGGATPLHIAAD  229 (384)
Q Consensus       154 ~-~~~~l~~A~~~~~~-~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~  229 (384)
                      . +.||||+|+..++. +++++|++.|++++..+..|.||||+|+..| +.+++++|+..|++++.. ..|.||||+|+.
T Consensus       271 ~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~  350 (682)
T PHA02876        271 DCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAST  350 (682)
T ss_pred             CCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHH
Confidence            3 34888888888886 5888888888888888888888888888888 578888888888888766 667888888877


Q ss_pred             h-CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 016683          230 I-GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       230 ~-~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                      . ++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.+..
T Consensus       351 ~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad  400 (682)
T PHA02876        351 LDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD  400 (682)
T ss_pred             hCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            4 467778888888888888888888888888888888888888776654

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2e-38  Score=297.81  Aligned_cols=289  Identities=17%  Similarity=0.252  Sum_probs=242.3

Q ss_pred             hhhhhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHH--cCCHHHHHHHHHhCCCCCcC
Q 016683            8 ALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAR--EGKTDVCKYLLEELKLDVDT   85 (384)
Q Consensus         8 ~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~   85 (384)
                      .+...+.+-++..++..++.+.++.+++...              ...+.++||.++.  .++.+++++|++. |+++|.
T Consensus         3 ~i~~~~~~~sl~~~~~~~n~~~~~~~l~~~~--------------~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~-Gadvn~   67 (446)
T PHA02946          3 NIMSAEYYLSLYAKYNSKNLDVFRNMLQAIE--------------PSGNYHILHAYCGIKGLDERFVEELLHR-GYSPNE   67 (446)
T ss_pred             hHHHHHHHHHHHHHHccCcHHHHHHHHhccC--------------CCCCChHHHHHHHhcCCCHHHHHHHHHC-cCCCCc
Confidence            3566788888999999999999999997521              1224789998775  4467899999998 999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCC--CCCCCCHhHH
Q 016683           86 QDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG--NIELLTYLLSKGAEVDS--ESDAGTPLIW  161 (384)
Q Consensus        86 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~--~~~~~~~l~~  161 (384)
                      +|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..+  ..+++++|+++|++++.  ...+.|||+ 
T Consensus        68 ~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-  146 (446)
T PHA02946         68 TDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-  146 (446)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-
Confidence            9999999999999999999999999999999999999999999998766  48999999999999984  334459997 


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCcccc-CCCchHHHHHHhhC--CHHHH
Q 016683          162 AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG--SLTCLDLLIQAGANANIV-AGGATPLHIAADIG--STEII  236 (384)
Q Consensus       162 A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~--~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~--~~~~v  236 (384)
                      |+..++.+++++|++.|++++..|..|.||||.|+..+  +.+++++|+++|++++.. ..|+||||+|+..|  +.+++
T Consensus       147 aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv  226 (446)
T PHA02946        147 ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDII  226 (446)
T ss_pred             HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHH
Confidence            67779999999999999999999999999999998755  468999999999999987 78999999999986  88999


Q ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHcCC-HHHHHhhcCCCCCCCCCC-----------------CC-chhhHHHHHHhh
Q 016683          237 KCLLKAGADPNVTDEDGQKPIQVAAARGN-REAVEILFPLTSEDPSIP-----------------KW-TVDGILEYMQSE  297 (384)
Q Consensus       237 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~~~~~~~~~-----------------~~-~~~~~~~~~~~~  297 (384)
                      ++|++ |++++.+|..|.||||+|+..++ .+++++|+..+.......                 .. ...+.+++..+.
T Consensus       227 ~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa  305 (446)
T PHA02946        227 NLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAV  305 (446)
T ss_pred             HHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHH
Confidence            99995 89999999999999999999998 589999998765321110                 00 011235555666


Q ss_pred             hchhHHHHHhhhhcCC
Q 016683          298 SGKQLEETRNLKENNA  313 (384)
Q Consensus       298 ~~~~~~~~~~l~~~~~  313 (384)
                      .....+.++.|++.+.
T Consensus       306 ~~g~~eivk~Ll~~~~  321 (446)
T PHA02946        306 EVGSIRCVKYLLDNDI  321 (446)
T ss_pred             HcCCHHHHHHHHHCCC
Confidence            6677777888887654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.1e-39  Score=306.94  Aligned_cols=248  Identities=26%  Similarity=0.295  Sum_probs=218.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcH
Q 016683           14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETP   93 (384)
Q Consensus        14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   93 (384)
                      ..+|||.||+.|+.++|++|++.    |.++     +.+|..|.||||+||..|+.+++++|++. +...+.  ..+.+|
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~----gadv-----n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-~~~~~~--~~~~~~  104 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTR----GHNV-----NQPDHRDLTPLHIICKEPNKLGMKEMIRS-INKCSV--FYTLVA  104 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHC----CCCC-----CCCCCCCCCHHHHHHHCccHhHHHHHHHH-Hhcccc--ccchhh
Confidence            34689999999999999999987    5444     56788999999999999999999999987 443333  467789


Q ss_pred             HHHHHHcCCHH---------------------------------HHHHHHHCCCCCCCCCCC-CCcHHHHHHHcCCHHHH
Q 016683           94 LLHAARQGHTE---------------------------------TAKYLFEHGANPTIPSNL-GATALHHSAGIGNIELL  139 (384)
Q Consensus        94 L~~A~~~g~~~---------------------------------~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~  139 (384)
                      ++.|+..|+.+                                 ++++|+++|++++..+.. |.||||+|+..|+.+++
T Consensus       105 l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv  184 (477)
T PHA02878        105 IKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLT  184 (477)
T ss_pred             HHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHH
Confidence            99998877644                                 667777788999999988 99999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc
Q 016683          140 TYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA-GSLTCLDLLIQAGANANIV  217 (384)
Q Consensus       140 ~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~-~~~~~v~~Ll~~g~~~~~~  217 (384)
                      ++|+++|++++..+..+ ||||.|+..++.+++++|++.|++++.++..|.||||+|+.. ++.+++++|+++|++++..
T Consensus       185 ~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~  264 (477)
T PHA02878        185 ELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAK  264 (477)
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCcc
Confidence            99999999998877655 999999999999999999999999999999999999999975 7999999999999999987


Q ss_pred             C--CCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHhhcCC
Q 016683          218 A--GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG-NREAVEILFPL  275 (384)
Q Consensus       218 ~--~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~  275 (384)
                      .  .|.||||+|  .++.+++++|+++|+|++..|..|.||||+|+..+ +.+++++|+..
T Consensus       265 ~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        265 SYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             CCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHH
Confidence            3  699999999  57889999999999999999999999999999764 56777777654

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.4e-39  Score=300.88  Aligned_cols=248  Identities=21%  Similarity=0.343  Sum_probs=221.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHH
Q 016683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL   95 (384)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   95 (384)
                      ..|+.|+..|+.+++++|++.    |.++     +.++..|.||||+|+..|+.+++++|++. |++++..+..+.||||
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~----g~~~-----n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~t~L~   73 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDI----GINP-----NFEIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVKYPDIESELH   73 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHC----CCCC-----CccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccCCCcccHHH
Confidence            479999999999999999987    5443     45677899999999999999999999997 9999998899999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHH
Q 016683           96 HAARQGHTETAKYLFEHGANPT-IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKV  173 (384)
Q Consensus        96 ~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~  173 (384)
                      .|+..|+.++|++|++.|.+.+ ..+..|.||||+|+..|+.+++++|+++|++++..+..+ ||||+|+..|+.+++++
T Consensus        74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~  153 (413)
T PHA02875         74 DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL  153 (413)
T ss_pred             HHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999999998764 456779999999999999999999999999998877655 99999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CC-CchHHHHHHhhCCHHHHHHHHHCCCCCCCC--
Q 016683          174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AG-GATPLHIAADIGSTEIIKCLLKAGADPNVT--  249 (384)
Q Consensus       174 Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~--  249 (384)
                      |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.. .. +.||+|+|+..|+.+++++|+++|++++..  
T Consensus       154 Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~  233 (413)
T PHA02875        154 LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFM  233 (413)
T ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhh
Confidence            99999999999999999999999999999999999999999977 34 468999999999999999999999999865  


Q ss_pred             -CCCCCcHHHHHHHcC---CHHHHHhhc
Q 016683          250 -DEDGQKPIQVAAARG---NREAVEILF  273 (384)
Q Consensus       250 -~~~g~t~l~~A~~~~---~~~~v~~Ll  273 (384)
                       +..+.||+++++...   ..+.++.++
T Consensus       234 ~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        234 IEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             cCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence             678999999876543   344454444

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2e-38  Score=306.86  Aligned_cols=285  Identities=21%  Similarity=0.240  Sum_probs=231.1

Q ss_pred             HcCChHHHHHHHHHhhhcC-CCccchhhhcc-cCCCCcHHHHHHH--cCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHH
Q 016683           23 CTGNLDLLKKIAKQLDDQG-KGLSKTVADIK-DANKRGALHFAAR--EGKTDVCKYLLEELKLDVDTQDEDGETPLLHAA   98 (384)
Q Consensus        23 ~~g~~~~v~~ll~~~~~~~-~~~~~~~~~~~-d~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   98 (384)
                      +.++++++++|++.    | .++     +.+ |..|.||||.|+.  +++.+++++|++. |++++.+|..|.||||+|+
T Consensus       151 ~~v~leiVk~LLe~----G~ADI-----N~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~kD~~G~TPLH~Aa  220 (764)
T PHA02716        151 RGIDLDLIKYMVDV----GIVNL-----NYVCKKTGYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQNNHLITPLHTYL  220 (764)
T ss_pred             cCCCHHHHHHHHHC----CCCCc-----ccccCCCCCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence            46999999999987    4 333     455 7889999999875  4678999999998 9999999999999999999


Q ss_pred             HcCC--HHHHHHHHHCCCCCCCCCCCCCcHHHHH-------------------------------------HHcCCHHHH
Q 016683           99 RQGH--TETAKYLFEHGANPTIPSNLGATALHHS-------------------------------------AGIGNIELL  139 (384)
Q Consensus        99 ~~g~--~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-------------------------------------~~~~~~~~~  139 (384)
                      ..|+  .++|++|+++|++++.+|..|.||||.|                                     +..|+.+++
T Consensus       221 ~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiV  300 (764)
T PHA02716        221 ITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVV  300 (764)
T ss_pred             HcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHH
Confidence            9995  5999999999999999999999999975                                     345788999


Q ss_pred             HHHHhCCCCCCCCCCCC-CHhHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH--------------cCCHH
Q 016683          140 TYLLSKGAEVDSESDAG-TPLIWAAG--HGQQEAVKVLLEHHANPNAETEDNITPLLSAVA--------------AGSLT  202 (384)
Q Consensus       140 ~~Ll~~~~~~~~~~~~~-~~l~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~--------------~~~~~  202 (384)
                      ++|+++|++++..+..+ ||||+|+.  .++.+++++|++.|++++.+|..|+||||+|+.              .++.+
T Consensus       301 klLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~e  380 (764)
T PHA02716        301 YSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLD  380 (764)
T ss_pred             HHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHH
Confidence            99999999998877655 99998764  468899999999999999999999999999875              36899


Q ss_pred             HHHHHHHcCCCcccc-CCCchHHHH----HHhhCCHHHHHHHHHCCC---------------------------------
Q 016683          203 CLDLLIQAGANANIV-AGGATPLHI----AADIGSTEIIKCLLKAGA---------------------------------  244 (384)
Q Consensus       203 ~v~~Ll~~g~~~~~~-~~g~t~L~~----A~~~~~~~~v~~Ll~~ga---------------------------------  244 (384)
                      ++++|+++|++++.. ..|.||||.    |...++.+++++|++.|+                                 
T Consensus       381 VVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~  460 (764)
T PHA02716        381 VIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIP  460 (764)
T ss_pred             HHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcc
Confidence            999999999999987 789999994    223467889988887542                                 


Q ss_pred             ----------------------------CCCCCCCCCCcHHHHHHHcCCH-----HHHHhhcCCCCCCCCCCCCchhhHH
Q 016683          245 ----------------------------DPNVTDEDGQKPIQVAAARGNR-----EAVEILFPLTSEDPSIPKWTVDGIL  291 (384)
Q Consensus       245 ----------------------------~~~~~~~~g~t~l~~A~~~~~~-----~~v~~Ll~~~~~~~~~~~~~~~~~~  291 (384)
                                                  +++..|..|+||||+|+..|+.     +++++|++.+... ...+..+.+.+
T Consensus       461 ~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADI-N~~d~~G~TPL  539 (764)
T PHA02716        461 TDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNI-NIPTKNGVTPL  539 (764)
T ss_pred             hhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCC-cccCCCCCCHH
Confidence                                        2345577899999999999886     4559999887653 34444444444


Q ss_pred             HHHHhhhc---hhHHHHHhhhhcCCCCCCC
Q 016683          292 EYMQSESG---KQLEETRNLKENNAPKDKA  318 (384)
Q Consensus       292 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~  318 (384)
                      .++.....   .+.+.++.+++.++..+..
T Consensus       540 h~A~~~g~~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        540 MLTMRNNRLSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             HHHHHcCCccccHHHHHHHHHhcCCCcchH
Confidence            44433322   2447788888887776654

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-38  Score=298.28  Aligned_cols=224  Identities=27%  Similarity=0.360  Sum_probs=210.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 016683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (384)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  135 (384)
                      .+++||.|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDI-GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            57899999999999999999997 99999999999999999999999999999999999999998999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCC--CCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 016683          136 IELLTYLLSKGAEVDSE--SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN  213 (384)
Q Consensus       136 ~~~~~~Ll~~~~~~~~~--~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~  213 (384)
                      .+++++|++.|...+..  ..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~  160 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC  160 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            99999999999876432  2345999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHhhcCCCCCCC
Q 016683          214 ANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ-KPIQVAAARGNREAVEILFPLTSEDP  280 (384)
Q Consensus       214 ~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~-t~l~~A~~~~~~~~v~~Ll~~~~~~~  280 (384)
                      ++.. ..|.||||+|+..|+.+++++|++.|++++..+..|. ||+|+|+..|+.+++++|++++.+..
T Consensus       161 ~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        161 LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN  229 (413)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence            9877 7899999999999999999999999999999998774 89999999999999999999987654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.8e-38  Score=277.19  Aligned_cols=210  Identities=18%  Similarity=0.206  Sum_probs=191.9

Q ss_pred             cCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 016683           66 EGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK  145 (384)
Q Consensus        66 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  145 (384)
                      .++.+++++|++. |+  +..|.+|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|++.
T Consensus         9 ~~~~~~~~~Lis~-~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791          9 WKSKQLKSFLSSK-DA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             cCHHHHHHHHHhC-CC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHC
Confidence            4678999999996 76  4678999999999999999999999999999988764  78999999999999999999999


Q ss_pred             CCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHcCCCccccCCCchH
Q 016683          146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNI-TPLLSAVAAGSLTCLDLLIQAGANANIVAGGATP  223 (384)
Q Consensus       146 ~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~-t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~  223 (384)
                      |++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|+ ||||+|+..|+.+++++|++++.+......|.||
T Consensus        84 Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~Tp  163 (284)
T PHA02791         84 GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC  163 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccH
Confidence            99998877665 999999999999999999999999999988885 8999999999999999999998654322358999


Q ss_pred             HHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHhhcCCCCCCC
Q 016683          224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP-IQVAAARGNREAVEILFPLTSEDP  280 (384)
Q Consensus       224 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~~  280 (384)
                      ||+|+..|+.+++++|+++|++++.+|..|.|| ||+|+.+|+.+++++|+.++....
T Consensus       164 Lh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in  221 (284)
T PHA02791        164 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIY  221 (284)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCc
Confidence            999999999999999999999999999999987 999999999999999999887543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-37  Score=308.92  Aligned_cols=257  Identities=25%  Similarity=0.306  Sum_probs=172.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCC---
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDED---   89 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~---   89 (384)
                      +..+.++.|+..|+.+++++|++.    |.++     +.+|..|.||||+|+..|+.++|++|++. |++++..+..   
T Consensus       144 ~~~~~l~~~i~~~~~~i~k~Ll~~----Gadv-----n~~d~~G~TpLh~Aa~~G~~~iv~~LL~~-Gad~n~~~~~g~t  213 (682)
T PHA02876        144 EYMKLIKERIQQDELLIAEMLLEG----GADV-----NAKDIYCITPIHYAAERGNAKMVNLLLSY-GADVNIIALDDLS  213 (682)
T ss_pred             hhhHHHHHHHHCCcHHHHHHHHhC----CCCC-----CCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCccCCCCCC
Confidence            345567777777777777777766    4433     45566777777777777777777777776 6666555444   


Q ss_pred             -----------------------------------------------------------CCcHHHHHHHcCCH-HHHHHH
Q 016683           90 -----------------------------------------------------------GETPLLHAARQGHT-ETAKYL  109 (384)
Q Consensus        90 -----------------------------------------------------------g~t~L~~A~~~g~~-~~v~~L  109 (384)
                                                                                 |.||||+|+..|+. +++++|
T Consensus       214 ~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lL  293 (682)
T PHA02876        214 VLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKL  293 (682)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence                                                                       55555555555543 355555


Q ss_pred             HHCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHc-CCHHHHHHHHhCCCCCCCCCC
Q 016683          110 FEHGANPTIPSNLGATALHHSAGIG-NIELLTYLLSKGAEVDSESDAG-TPLIWAAGH-GQQEAVKVLLEHHANPNAETE  186 (384)
Q Consensus       110 l~~g~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~  186 (384)
                      ++.|++++..|..|.||||+|+..| +.++++.|+..|++++..+..+ ||||+|+.. ++.+++++|++.|++++.+|.
T Consensus       294 l~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~  373 (682)
T PHA02876        294 LERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDY  373 (682)
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCC
Confidence            5555555555555666666665555 3555666666665555544433 666666553 356666777777777777777


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCC-HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 016683          187 DNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGS-TEIIKCLLKAGADPNVTDEDGQKPIQVAAARG  264 (384)
Q Consensus       187 ~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  264 (384)
                      .|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..++ ..++++|++.|++++.+|..|+||||+|+..+
T Consensus       374 ~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        374 CDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhC
Confidence            7777777777777777777777777777765 667777777776544 45677778888888888888888888888766


Q ss_pred             -CHHHHHhhcCCCCCC
Q 016683          265 -NREAVEILFPLTSED  279 (384)
Q Consensus       265 -~~~~v~~Ll~~~~~~  279 (384)
                       +.+++++|++.+...
T Consensus       454 ~~~~iv~lLl~~Gad~  469 (682)
T PHA02876        454 CKLDVIEMLLDNGADV  469 (682)
T ss_pred             CcHHHHHHHHHCCCCC
Confidence             578888888776543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=6.5e-38  Score=291.65  Aligned_cols=293  Identities=27%  Similarity=0.346  Sum_probs=218.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCc
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   92 (384)
                      ....+||.|+...-.+.++.|++.    |++.     ...+..+.+|+|+|+..|+.+.++.|++. |+++|..|..|.|
T Consensus        87 ~~n~~l~~a~~~~~~~~i~~Lls~----gad~-----~~~n~~~~aplh~A~~~~~~s~L~~Ll~~-~~dvnl~de~~~T  156 (929)
T KOG0510|consen   87 ADNTPLHAAVEYNQGDKIQVLLSY----GADT-----PLRNLNKNAPLHLAADSGNYSCLKLLLDY-GADVNLEDENGFT  156 (929)
T ss_pred             ccCchhHHHhhcchHHHHHHHHhc----CCCC-----ChhhhhccCchhhccccchHHHHHHHHHh-cCCccccccCCCc
Confidence            345678888888888889988887    4433     45566788888888888888888888886 7888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-----CCCCCCCCCCCC-CHhHHHHHcC
Q 016683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLS-----KGAEVDSESDAG-TPLIWAAGHG  166 (384)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-----~~~~~~~~~~~~-~~l~~A~~~~  166 (384)
                      |||+||..++.+..+.|++.|+++...|.+|++|+|.|+++|..++.+.++.     .+..++..+.++ +|||.|+..|
T Consensus       157 pLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g  236 (929)
T KOG0510|consen  157 PLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGG  236 (929)
T ss_pred             hhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcC
Confidence            8888888888887788888888888888888888888888888888888777     445555555554 7888888888


Q ss_pred             CHHHHHHHHhCCCC---------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhh
Q 016683          167 QQEAVKVLLEHHAN---------------PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADI  230 (384)
Q Consensus       167 ~~~~~~~Ll~~~~~---------------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~  230 (384)
                      +.++++.++++|..               ++..|.+|.||||+|++.|++++++.|+..|++++.. .++.||||.||.+
T Consensus       237 ~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~y  316 (929)
T KOG0510|consen  237 DIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIY  316 (929)
T ss_pred             CHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHc
Confidence            88888888877653               2446677788888888888888888888888887776 6677888888888


Q ss_pred             CCHHHHHHHHH-CC-CCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhHHHHHhh
Q 016683          231 GSTEIIKCLLK-AG-ADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNL  308 (384)
Q Consensus       231 ~~~~~v~~Ll~-~g-a~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  308 (384)
                      |+.+.|+-||+ .| ...|..|..|.||||+|+..||..+++.|+..++........+.++.+.+.-+........++.+
T Consensus       317 g~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~L  396 (929)
T KOG0510|consen  317 GRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKL  396 (929)
T ss_pred             ccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHH
Confidence            88888887777 43 34567777788888888888888888888777766553233344555555555556666666666


Q ss_pred             hhcCCCC
Q 016683          309 KENNAPK  315 (384)
Q Consensus       309 ~~~~~~~  315 (384)
                      ...++..
T Consensus       397 i~~Ga~I  403 (929)
T KOG0510|consen  397 ISHGADI  403 (929)
T ss_pred             HHcCCce
Confidence            6655554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-38  Score=245.92  Aligned_cols=205  Identities=32%  Similarity=0.462  Sum_probs=152.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCC-CCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHc
Q 016683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDE-DGETPLLHAARQGHTETAKYLF-EHGANPTIPSNLGATALHHSAGI  133 (384)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~  133 (384)
                      +.++.+.+|......-++.+++..+..++.++. +|+||||+||..|+.++|.+|+ +.+..++..|..|+||||+|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            345666666666666666666654445566555 6777777777777777777777 44566666677777777777777


Q ss_pred             CCHHHHHHHHhC-CCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 016683          134 GNIELLTYLLSK-GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG  211 (384)
Q Consensus       134 ~~~~~~~~Ll~~-~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g  211 (384)
                      |+.++|+.|+.+ |++++....+| |+||+|+..|+.++.++|+++|+.++.+|..|.||||-|+.-|+++++++|+..|
T Consensus        83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence            777777777776 77777666665 7777777777777777777777777888888888888888888888888888888


Q ss_pred             CCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 016683          212 ANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA  261 (384)
Q Consensus       212 ~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  261 (384)
                      +.+|.. ..|+||||.|.-.|+.++..+|+++|++++..|+.| ||+..|+
T Consensus       163 a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  163 APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             CCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence            877777 778888888877778888888888888888888887 8877664

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.4e-37  Score=293.48  Aligned_cols=267  Identities=22%  Similarity=0.250  Sum_probs=225.2

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHH
Q 016683           17 QFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLH   96 (384)
Q Consensus        17 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   96 (384)
                      .|+.++...+.+.+...++.+...+..     .+.....+.||||+|+..|+.++|++|++. |++++.+|..|.||||+
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~-----~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~-gadvn~~d~~g~TpLh~   76 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENY-----STSASLIPFIPLHQAVEARNLDVVKSLLTR-GHNVNQPDHRDLTPLHI   76 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhh-----cCcccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHH
Confidence            467788888877777777765442222     123455789999999999999999999998 99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH---------------------------------HHHHHH
Q 016683           97 AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE---------------------------------LLTYLL  143 (384)
Q Consensus        97 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---------------------------------~~~~Ll  143 (384)
                      ||..|+.+++++|++.+.+...  ..+.+|++.|+..++.+                                 ++++|+
T Consensus        77 A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll  154 (477)
T PHA02878         77 ICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLL  154 (477)
T ss_pred             HHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHH
Confidence            9999999999999998766554  45788999988777654                                 556666


Q ss_pred             hCCCCCCCCCCC--CCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCC
Q 016683          144 SKGAEVDSESDA--GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGG  220 (384)
Q Consensus       144 ~~~~~~~~~~~~--~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g  220 (384)
                      ++|++++..+..  .||||+|+..|+.+++++|++.|++++..+..|.||||.|+..++.+++++|++.|++++.. ..|
T Consensus       155 ~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g  234 (477)
T PHA02878        155 SYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCG  234 (477)
T ss_pred             HcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCC
Confidence            677787776654  49999999999999999999999999999999999999999999999999999999999987 789


Q ss_pred             chHHHHHHhh-CCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHH
Q 016683          221 ATPLHIAADI-GSTEIIKCLLKAGADPNVTDE-DGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYM  294 (384)
Q Consensus       221 ~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  294 (384)
                      .||||+|+.. ++.+++++|+++|++++.++. .|.||||+|  .++.+++++|++++.... ..+..+.+.+.++
T Consensus       235 ~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin-~~d~~g~TpL~~A  307 (477)
T PHA02878        235 NTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADIN-SLNSYKLTPLSSA  307 (477)
T ss_pred             CCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCC-CcCCCCCCHHHHH
Confidence            9999999976 799999999999999999886 899999999  578899999999886543 3344444544444

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.5e-37  Score=295.65  Aligned_cols=252  Identities=19%  Similarity=0.261  Sum_probs=202.1

Q ss_pred             HHHHHHHHHHc--CChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcC------CHHHHHHHHHhCCCCCcC
Q 016683           14 RVQQFLNAACT--GNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG------KTDVCKYLLEELKLDVDT   85 (384)
Q Consensus        14 ~~~~l~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g------~~~~v~~Ll~~~~~~~~~   85 (384)
                      +.++++.++..  ++.++|+.|++.    |++++     .++ .+.||||.|+.++      +.+++++|++. |+++|.
T Consensus        35 g~t~l~~~~~~~~~~~~iv~~Ll~~----GAdvn-----~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~  103 (494)
T PHA02989         35 GNSILLLYLKRKDVKIKIVKLLIDN----GADVN-----YKG-YIETPLCAVLRNREITSNKIKKIVKLLLKF-GADINL  103 (494)
T ss_pred             CCCHHHHHHhcCCCChHHHHHHHHc----CCCcc-----CCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHC-CCCCCC
Confidence            34456555544  367888888887    55542     233 4688888887654      46788888887 888888


Q ss_pred             CCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCCC-CC-CCCC
Q 016683           86 QDEDGETPLLHAARQ---GHTETAKYLFEHGANP-TIPSNLGATALHHSAGI--GNIELLTYLLSKGAEVDS-ES-DAGT  157 (384)
Q Consensus        86 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~~~~~~~-~~-~~~~  157 (384)
                      ++..|.||||.|+..   |+.++|++|+++|+++ +..|..|.||||+|+..  ++.+++++|+++|++++. .+ .+.|
T Consensus       104 ~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~t  183 (494)
T PHA02989        104 KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLT  183 (494)
T ss_pred             CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCC
Confidence            888888888887765   5788888888888888 78888888888887654  578888888888888876 33 3348


Q ss_pred             HhHHHHHcC----CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc------CCHHHHHHHHHcCCCcccc-CCCchHHHH
Q 016683          158 PLIWAAGHG----QQEAVKVLLEHHANPNAETEDNITPLLSAVAA------GSLTCLDLLIQAGANANIV-AGGATPLHI  226 (384)
Q Consensus       158 ~l~~A~~~~----~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~------~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~  226 (384)
                      |||.|+..+    +.+++++|+++|++++..+..+.|++|.++..      +..+++++|+. |++++.. ..|+||||+
T Consensus       184 pL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~  262 (494)
T PHA02989        184 PMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLI  262 (494)
T ss_pred             hHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHH
Confidence            888887654    78888888888888888888888888876654      34667776654 6888877 779999999


Q ss_pred             HHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 016683          227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (384)
Q Consensus       227 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (384)
                      |+..|+.+++++|++.|+|++.+|..|.||||+|+..|+.+++++|++..+
T Consensus       263 Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        263 SAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             HHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999998754

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-37  Score=295.80  Aligned_cols=246  Identities=21%  Similarity=0.275  Sum_probs=219.4

Q ss_pred             HcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHc-----CCHHHHHHHHHhCCCCCcCCCCCCCcHHHHH
Q 016683           23 CTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAARE-----GKTDVCKYLLEELKLDVDTQDEDGETPLLHA   97 (384)
Q Consensus        23 ~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A   97 (384)
                      ..++.++|+.|++.    |.++     +.+|..|.||||.|+.+     ++.+++++|++. |+++|.+|..|.||||+|
T Consensus        47 ~~~~~~iv~~Ll~~----Gadv-----n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~-GadiN~~d~~G~TpLh~a  116 (489)
T PHA02798         47 DSPSTDIVKLFINL----GANV-----NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN-GADINKKNSDGETPLYCL  116 (489)
T ss_pred             CCCCHHHHHHHHHC----CCCC-----CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC-CCCCCCCCCCcCcHHHHH
Confidence            34589999999987    5554     56789999999999864     679999999997 999999999999999999


Q ss_pred             HHcC---CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCCCCC--CCCHhHHHHHc----
Q 016683           98 ARQG---HTETAKYLFEHGANPTIPSNLGATALHHSAGIGN---IELLTYLLSKGAEVDSESD--AGTPLIWAAGH----  165 (384)
Q Consensus        98 ~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~~~~~~~~~~~--~~~~l~~A~~~----  165 (384)
                      +.++   +.+++++|+++|++++..|..|.||||+|+..++   .+++++|+++|++++..+.  +.||||.++..    
T Consensus       117 ~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~  196 (489)
T PHA02798        117 LSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDR  196 (489)
T ss_pred             HHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhcccc
Confidence            9986   7899999999999999999999999999999988   9999999999999987643  34999988764    


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCCHHH-------HHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHH
Q 016683          166 GQQEAVKVLLEHHANPNAETEDNITPLL-------SAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIK  237 (384)
Q Consensus       166 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~-------~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~  237 (384)
                      ++.+++++|+++|++++..+..|.++++       .+...++.+++++|+. +++++.. ..|+||||+|+..|+.++++
T Consensus       197 ~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~  275 (489)
T PHA02798        197 IDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFE  275 (489)
T ss_pred             CCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHH
Confidence            4899999999999999999988999877       2344567888888766 6899877 78999999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 016683          238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED  279 (384)
Q Consensus       238 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  279 (384)
                      +|++.|+|++.+|..|+|||++|+.+++.++++.|++.++..
T Consensus       276 ~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        276 YLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNK  317 (489)
T ss_pred             HHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCH
Confidence            999999999999999999999999999999999999877643

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-38  Score=244.94  Aligned_cols=207  Identities=30%  Similarity=0.407  Sum_probs=183.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHH
Q 016683           17 QFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLH   96 (384)
Q Consensus        17 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   96 (384)
                      +.+.++......-++.+++..       .+.+....|.+|+||||.||..|+.+++++|++..+..+|.+|..|+||||+
T Consensus         6 ~~~~~~~~~~~~kveel~~s~-------~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhi   78 (226)
T KOG4412|consen    6 LGKAICENCEEFKVEELIQSD-------PKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHI   78 (226)
T ss_pred             hHHHHHhhchHHHHHHHHhcC-------hhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhh
Confidence            345555556666666666541       1244445566999999999999999999999988899999999999999999


Q ss_pred             HHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHH
Q 016683           97 AARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL  174 (384)
Q Consensus        97 A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~L  174 (384)
                      |+..|+.++|+.|+.+ |+|+|..+..|.||||+|+..|+.+|+++|+++|+.++..+..+ ||||.|+.-|.++++++|
T Consensus        79 a~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~L  158 (226)
T KOG4412|consen   79 AASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYL  158 (226)
T ss_pred             hhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHH
Confidence            9999999999999998 99999999999999999999999999999999999999988777 999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCchHHHHHHhh
Q 016683          175 LEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADI  230 (384)
Q Consensus       175 l~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~  230 (384)
                      +..|+.+|.+|..|+||||.|...|+.++...|+++|++.+...+..||+..|+-.
T Consensus       159 i~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~t~~~~a~~~  214 (226)
T KOG4412|consen  159 ISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEGTALRIACNE  214 (226)
T ss_pred             HhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccCchHHHHHHH
Confidence            99999999999999999999999999999999999999998873344998877543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=6.1e-37  Score=285.21  Aligned_cols=259  Identities=32%  Similarity=0.429  Sum_probs=231.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCc
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   92 (384)
                      ....++|.|+..|+++.++.|++.    +.+     ++..|..|.||||+||..++.+..+.|++. |+++...|.+|++
T Consensus       120 ~~~aplh~A~~~~~~s~L~~Ll~~----~~d-----vnl~de~~~TpLh~A~~~~~~E~~k~Li~~-~a~~~K~~~~~~~  189 (929)
T KOG0510|consen  120 NKNAPLHLAADSGNYSCLKLLLDY----GAD-----VNLEDENGFTPLHLAARKNKVEAKKELINK-GADPCKSDIDGNF  189 (929)
T ss_pred             hccCchhhccccchHHHHHHHHHh----cCC-----ccccccCCCchhhHHHhcChHHHHHHHHhc-CCCCCcccCcCCc
Confidence            345689999999999999999998    433     377899999999999999999977777776 9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHH-----CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC---------------CC
Q 016683           93 PLLHAARQGHTETAKYLFE-----HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD---------------SE  152 (384)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~---------------~~  152 (384)
                      |+|.|+++|..++.+..+.     .+..++..+..|.||||.|+..|++++++.+++.|....               ..
T Consensus       190 ~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~  269 (929)
T KOG0510|consen  190 PIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDE  269 (929)
T ss_pred             hHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcc
Confidence            9999999999999999998     678899999999999999999999999999999986543               22


Q ss_pred             C-CCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCC-cccc-CCCchHHHHHH
Q 016683          153 S-DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ-AGAN-ANIV-AGGATPLHIAA  228 (384)
Q Consensus       153 ~-~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~-~g~~-~~~~-~~g~t~L~~A~  228 (384)
                      + ++.||||+|++.|+.++++.|+..|++++.++.++.||||.|+.+|++.+|+.|++ .|.. .+.. ..|.||||+|+
T Consensus       270 d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa  349 (929)
T KOG0510|consen  270 DNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA  349 (929)
T ss_pred             cccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh
Confidence            3 33499999999999999999999999999999999999999999999999999999 4422 2222 56999999999


Q ss_pred             hhCCHHHHHHHHHCCCCCC---CCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCC
Q 016683          229 DIGSTEIIKCLLKAGADPN---VTDEDGQKPIQVAAARGNREAVEILFPLTSEDPS  281 (384)
Q Consensus       229 ~~~~~~~v~~Ll~~ga~~~---~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  281 (384)
                      ..||..+++.|++.|+...   ..|.+|.||||.|+..|+..+|+.|+.++.....
T Consensus       350 ~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  350 KSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             hcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceee
Confidence            9999999999999999877   5699999999999999999999999999876533

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.6e-35  Score=281.78  Aligned_cols=278  Identities=21%  Similarity=0.247  Sum_probs=227.3

Q ss_pred             HHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHc--CCHHHHHHHHHhCCCCCcCCCCCCCcHHHH
Q 016683           19 LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAARE--GKTDVCKYLLEELKLDVDTQDEDGETPLLH   96 (384)
Q Consensus        19 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   96 (384)
                      +......+.++++.|++.    |.++     +.. ..|.||||.++..  ++.++|++|++. |+++|.++ .+.||||.
T Consensus         8 ~~~~~~~~~~~v~~LL~~----Gadv-----N~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~-GAdvn~~~-~~~tpL~~   75 (494)
T PHA02989          8 ILYSDTVDKNALEFLLRT----GFDV-----NEE-YRGNSILLLYLKRKDVKIKIVKLLIDN-GADVNYKG-YIETPLCA   75 (494)
T ss_pred             HHcCCcCcHHHHHHHHHc----CCCc-----ccc-cCCCCHHHHHHhcCCCChHHHHHHHHc-CCCccCCC-CCCCcHHH
Confidence            344456899999999988    6555     333 4689999876654  378999999998 99999886 57999999


Q ss_pred             HHHcC------CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCC-CCCCCCC-CHhHHHHHc
Q 016683           97 AARQG------HTETAKYLFEHGANPTIPSNLGATALHHSAGI---GNIELLTYLLSKGAEV-DSESDAG-TPLIWAAGH  165 (384)
Q Consensus        97 A~~~g------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~-~~~~~~~-~~l~~A~~~  165 (384)
                      |+.++      +.++|++|+++|++++..|..|.||||.|+..   ++.+++++|+++|+++ +..+..| ||||+|+..
T Consensus        76 a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~  155 (494)
T PHA02989         76 VLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLES  155 (494)
T ss_pred             HHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHh
Confidence            98764      47899999999999999999999999988765   6799999999999999 6665544 999998764


Q ss_pred             --CCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcC----CHHHHHHHHHcCCCcccc-CCCchHHHHHHhh------C
Q 016683          166 --GQQEAVKVLLEHHANPNA-ETEDNITPLLSAVAAG----SLTCLDLLIQAGANANIV-AGGATPLHIAADI------G  231 (384)
Q Consensus       166 --~~~~~~~~Ll~~~~~~~~-~~~~g~t~l~~A~~~~----~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~------~  231 (384)
                        ++.+++++|+++|++++. .+..|.||||.|+..+    +.+++++|+++|++++.. ..+.|+||.++..      +
T Consensus       156 ~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~  235 (494)
T PHA02989        156 FSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKK  235 (494)
T ss_pred             ccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhccc
Confidence              689999999999999998 6789999999998764    899999999999999977 5689999987764      3


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhHHHHHhhhhc
Q 016683          232 STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKEN  311 (384)
Q Consensus       232 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  311 (384)
                      ..+++++|+. |++++.+|..|+||||+|+..|+.+++++|++.+++.. ..+..+.+.+  ..+......+.++.+++.
T Consensus       236 ~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin-~~d~~G~TpL--~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        236 EFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY-NVSKDGDTVL--TYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             chHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcc-ccCCCCCCHH--HHHHHcCCHHHHHHHHhc
Confidence            5788887765 69999999999999999999999999999999876543 3333444444  444445566666666655


Q ss_pred             C
Q 016683          312 N  312 (384)
Q Consensus       312 ~  312 (384)
                      .
T Consensus       312 ~  312 (494)
T PHA02989        312 K  312 (494)
T ss_pred             C
Confidence            4

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.5e-36  Score=263.02  Aligned_cols=195  Identities=30%  Similarity=0.421  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCc
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   92 (384)
                      .+-+||..|+++|+.++|++|+++...+...-...-.+-....|-+||-.|+..||+++|+.|+++ |+++|.......|
T Consensus        41 ~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~-ga~VN~tT~TNSt  119 (615)
T KOG0508|consen   41 NGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRR-GASVNDTTRTNST  119 (615)
T ss_pred             CCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHh-cCccccccccCCc
Confidence            445789999999999999999997532111111111223355799999999999999999999998 8999999888889


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHH
Q 016683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAV  171 (384)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~  171 (384)
                      ||-.||.-|+.++|++|+++|+|++..|..|.|+|++|+..|+.+|+++|++.|+++|..+..| |+||.|+..|+.+++
T Consensus       120 PLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdiv  199 (615)
T KOG0508|consen  120 PLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIV  199 (615)
T ss_pred             cHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888666 999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 016683          172 KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ  209 (384)
Q Consensus       172 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  209 (384)
                      ++|+.+|+.+.. |..|.|||..|+..|+.++|++|++
T Consensus       200 q~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  200 QLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999998764 5569999999999999999999984

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.7e-33  Score=272.83  Aligned_cols=286  Identities=18%  Similarity=0.176  Sum_probs=177.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHH--HcCCHHHHHHHHHhCCCCCcCCCC---CC-
Q 016683           17 QFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAA--REGKTDVCKYLLEELKLDVDTQDE---DG-   90 (384)
Q Consensus        17 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~---~g-   90 (384)
                      .++.|+..|+.++|+.|++.    |.++     +.+|..|.||||.|+  ..|+.+++++|++. |++++..|.   .| 
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~----Gadi-----n~~d~~g~T~L~~~~a~~~~~~eivklLi~~-Ga~vn~~d~~~~~g~  175 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEH----GFDL-----SVKCENHRSVIENYVMTDDPVPEIIDLFIEN-GCSVLYEDEDDEYGY  175 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHc----CCCC-----CccCCCCccHHHHHHHccCCCHHHHHHHHHc-CCCcccccccccccc
Confidence            45567777788888888776    5444     567888889998544  46788999988887 888876543   23 


Q ss_pred             ----------CcHHHHHHH-----------cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH--HHHHHHHhCCC
Q 016683           91 ----------ETPLLHAAR-----------QGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI--ELLTYLLSKGA  147 (384)
Q Consensus        91 ----------~t~L~~A~~-----------~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~~~  147 (384)
                                .||||+|+.           .++.++|++|+++|++++..|..|.||||+|+..|+.  +++++|++ |+
T Consensus       176 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~  254 (661)
T PHA02917        176 AYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GI  254 (661)
T ss_pred             ccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CC
Confidence                      488988876           4578889999998999888888889999998888874  68888875 65


Q ss_pred             CCCC----CC-CCCCHhHHHHH-------c--CCHHHHHHHHhCCCCCCC-------CCC------------CCCCHHHH
Q 016683          148 EVDS----ES-DAGTPLIWAAG-------H--GQQEAVKVLLEHHANPNA-------ETE------------DNITPLLS  194 (384)
Q Consensus       148 ~~~~----~~-~~~~~l~~A~~-------~--~~~~~~~~Ll~~~~~~~~-------~~~------------~g~t~l~~  194 (384)
                      +.+.    .+ .+.+|+++|+.       .  .+.+++++|++.|++...       .+.            .+.+++|.
T Consensus       255 d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (661)
T PHA02917        255 DNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHI  334 (661)
T ss_pred             cccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHH
Confidence            4431    11 12244555552       1  144555555555543210       000            11122222


Q ss_pred             H---HHcCC--HHHHHHHHHcCCCcccc-------------------------------CCCchHHHHHHhhC-------
Q 016683          195 A---VAAGS--LTCLDLLIQAGANANIV-------------------------------AGGATPLHIAADIG-------  231 (384)
Q Consensus       195 A---~~~~~--~~~v~~Ll~~g~~~~~~-------------------------------~~g~t~L~~A~~~~-------  231 (384)
                      +   +..|.  .+++++|+++|++++..                               ..|.||||.|++.+       
T Consensus       335 l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~  414 (661)
T PHA02917        335 LIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFY  414 (661)
T ss_pred             HHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhh
Confidence            2   22333  33555555555554421                               23778888776432       


Q ss_pred             ----------------CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHH
Q 016683          232 ----------------STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQ  295 (384)
Q Consensus       232 ----------------~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  295 (384)
                                      ..+++++|+++|++++.+|..|+||||+|+..++.+++++|++.+...... +..+.+.+.++.
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~-d~~G~T~L~~A~  493 (661)
T PHA02917        415 TYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIR-SNNGYTCIAIAI  493 (661)
T ss_pred             hhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCC-CCCCCCHHHHHH
Confidence                            245678888888888888888888888888888888888888776654332 222333333332


Q ss_pred             hhhchhHHHHHhhhhcCCCC
Q 016683          296 SESGKQLEETRNLKENNAPK  315 (384)
Q Consensus       296 ~~~~~~~~~~~~l~~~~~~~  315 (384)
                      . .....+..+.+...++..
T Consensus       494 ~-~~~~~~iv~~LL~~ga~i  512 (661)
T PHA02917        494 N-ESRNIELLKMLLCHKPTL  512 (661)
T ss_pred             H-hCCCHHHHHHHHHcCCCh
Confidence            1 122344555555555444

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.8e-33  Score=268.42  Aligned_cols=275  Identities=20%  Similarity=0.214  Sum_probs=223.5

Q ss_pred             CChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHH--cCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHc--
Q 016683           25 GNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAR--EGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQ--  100 (384)
Q Consensus        25 g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--  100 (384)
                      =+++.|+.|++...     +    .+.  ..|.|+++.+..  .++.++|++|++. |+++|..+..|.||||.|+.+  
T Consensus        16 ~~~~~v~~ll~~~~-----~----~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpL~~~~~n~~   83 (489)
T PHA02798         16 VKLSTVKLLIKSCN-----P----NEI--VNEYSIFQKYLQRDSPSTDIVKLFINL-GANVNGLDNEYSTPLCTILSNIK   83 (489)
T ss_pred             ccHHHHHHHHhcCC-----h----hhh--cccchHHHHHHhCCCCCHHHHHHHHHC-CCCCCCCCCCCCChHHHHHHhHH
Confidence            35679999996521     1    111  346677764444  4589999999998 999999999999999999864  


Q ss_pred             ---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCC---HHH
Q 016683          101 ---GHTETAKYLFEHGANPTIPSNLGATALHHSAGIG---NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ---QEA  170 (384)
Q Consensus       101 ---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~---~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~---~~~  170 (384)
                         ++.+++++|+++|++++..|..|.||||+|+..+   +.+++++|+++|++++..+..+ ||||+|+..++   .++
T Consensus        84 ~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~v  163 (489)
T PHA02798         84 DYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEI  163 (489)
T ss_pred             hHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHH
Confidence               6789999999999999999999999999999876   7899999999999999887666 99999999988   999


Q ss_pred             HHHHHhCCCCCCCCC-CCCCCHHHHHHHc----CCHHHHHHHHHcCCCcccc-CCCchHHH-------HHHhhCCHHHHH
Q 016683          171 VKVLLEHHANPNAET-EDNITPLLSAVAA----GSLTCLDLLIQAGANANIV-AGGATPLH-------IAADIGSTEIIK  237 (384)
Q Consensus       171 ~~~Ll~~~~~~~~~~-~~g~t~l~~A~~~----~~~~~v~~Ll~~g~~~~~~-~~g~t~L~-------~A~~~~~~~~v~  237 (384)
                      +++|++.|++++..+ ..|.||||.++..    ++.+++++|+++|++++.. ..|.++++       ++...++.++++
T Consensus       164 v~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~  243 (489)
T PHA02798        164 IKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILD  243 (489)
T ss_pred             HHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHH
Confidence            999999999999875 5789999998765    4899999999999999876 56777766       244567788998


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhHHHHHhhhhcCCCC
Q 016683          238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPK  315 (384)
Q Consensus       238 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (384)
                      +|+. |+|+|.+|..|+||||+|+..|+.+++++|++.++... ..+..+.+  ++..+......+..+.+.+.+.+.
T Consensus       244 ~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin-~~d~~G~T--pL~~A~~~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        244 FIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDIN-IITELGNT--CLFTAFENESKFIFNSILNKKPNK  317 (489)
T ss_pred             HHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccc-ccCCCCCc--HHHHHHHcCcHHHHHHHHccCCCH
Confidence            8776 69999999999999999999999999999999876543 33333444  444445555566666666655444

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=8.7e-34  Score=259.30  Aligned_cols=208  Identities=32%  Similarity=0.441  Sum_probs=195.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcC
Q 016683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHHSAGIG  134 (384)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~  134 (384)
                      ..+-++.|+++|.++.|+.|++.-|.+++..|.+|.|+||.|+.+++.+++++|+++|+++|... ..+.||||+|+++|
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            45578899999999999999997799999999999999999999999999999999999999988 67899999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 016683          135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN  213 (384)
Q Consensus       135 ~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~  213 (384)
                      +..++.+|+++|++++..+..| +|+|.|++.++.-++-+|+.++++++.+|.+|.||||+|+..|+...+..|++-|+.
T Consensus       124 ~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS  203 (600)
T ss_pred             cHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc
Confidence            9999999999999999988877 999999999999999999999999999999999999999999998889999999999


Q ss_pred             cccc--CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q 016683          214 ANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR  263 (384)
Q Consensus       214 ~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  263 (384)
                      +...  ..|+||||+|+..|+..++++|++.|++.+.+|.+|.||+++|.++
T Consensus       204 ~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  204 LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            8876  7799999999999999999978888899999999999999999877

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.8e-32  Score=265.77  Aligned_cols=285  Identities=17%  Similarity=0.145  Sum_probs=219.9

Q ss_pred             hHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCH
Q 016683           27 LDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAARE---GKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT  103 (384)
Q Consensus        27 ~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~  103 (384)
                      ++.|++|+..    +.     ..+.+|.+|.||||+|+..   |+.++|++|++. |++++..+..|.||||.|+..|+.
T Consensus        12 ~~~~~~l~~~----~~-----~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~-ga~v~~~~~~g~TpL~~Aa~~g~~   81 (661)
T PHA02917         12 LDELKQMLRD----RD-----PNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS-GTNPLHKNWRQLTPLEEYTNSRHV   81 (661)
T ss_pred             HHHHHHHHhc----cC-----cccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcCCh
Confidence            4667777753    22     2256689999999998665   889999999997 999999999999999999999985


Q ss_pred             H----HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHH--HHcCCHHHHHHHHh
Q 016683          104 E----TAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWA--AGHGQQEAVKVLLE  176 (384)
Q Consensus       104 ~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A--~~~~~~~~~~~Ll~  176 (384)
                      +    +++.|++.+...+..+  ..+++++|+.+++.+++++|+++|++++..+..+ |||+.+  +..|+.+++++|++
T Consensus        82 ~v~~~~~~~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~  159 (661)
T PHA02917         82 KVNKDIAMALLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIE  159 (661)
T ss_pred             hHHHHHHHHHHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHH
Confidence            4    5678887654444433  2377888999999999999999999999887555 999964  45789999999999


Q ss_pred             CCCCCCCCCC---CC-----------CCHHHHHHH-----------cCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhh
Q 016683          177 HHANPNAETE---DN-----------ITPLLSAVA-----------AGSLTCLDLLIQAGANANIV-AGGATPLHIAADI  230 (384)
Q Consensus       177 ~~~~~~~~~~---~g-----------~t~l~~A~~-----------~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~  230 (384)
                      +|++++..+.   .|           .||||+|+.           .++.+++++|+++|++++.. ..|.||||+|+..
T Consensus       160 ~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~  239 (661)
T PHA02917        160 NGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKS  239 (661)
T ss_pred             cCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHc
Confidence            9999986543   23           599999986           46899999999999999988 8899999999999


Q ss_pred             CCH--HHHHHHHHCCCCCC----CCCCCCCcHHHHHHH-------cC--CHHHHHhhcCCCCCCCCC------CCCchhh
Q 016683          231 GST--EIIKCLLKAGADPN----VTDEDGQKPIQVAAA-------RG--NREAVEILFPLTSEDPSI------PKWTVDG  289 (384)
Q Consensus       231 ~~~--~~v~~Ll~~ga~~~----~~~~~g~t~l~~A~~-------~~--~~~~v~~Ll~~~~~~~~~------~~~~~~~  289 (384)
                      |+.  ++|++|++ |++++    ..|..|.+|+++|+.       ++  +.+++++|++.+...+..      .....+.
T Consensus       240 g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~  318 (661)
T PHA02917        240 SHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKET  318 (661)
T ss_pred             CCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHH
Confidence            985  79999986 88765    566788999999984       11  789999999998653211      1111111


Q ss_pred             H------------HHH-HHh--hhchhHHHHHhhhhcCCCCCCCCCCCCC
Q 016683          290 I------------LEY-MQS--ESGKQLEETRNLKENNAPKDKAPMKELP  324 (384)
Q Consensus       290 ~------------~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~  324 (384)
                      +            ... ...  ......+.++.|.+.++....++.....
T Consensus       319 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~  368 (661)
T PHA02917        319 ISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYF  368 (661)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccc
Confidence            1            111 111  1112355789999999998877665543

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.6e-32  Score=258.68  Aligned_cols=255  Identities=16%  Similarity=0.217  Sum_probs=212.0

Q ss_pred             HHHHHHHHHHHcC---ChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcC--CHHHHHHHHHhCCC--CCcC
Q 016683           13 ERVQQFLNAACTG---NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG--KTDVCKYLLEELKL--DVDT   85 (384)
Q Consensus        13 ~~~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~--~~~~   85 (384)
                      ++.++||.|+..|   +.++|+.|+++    |+++     +.+|..|.||||+|+..|  +.++|++|++. |+  +++.
T Consensus        40 ~G~TaLh~A~~~~~~~~~eivklLLs~----GAdi-----n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~-~~~~~~~~  109 (672)
T PHA02730         40 RGNNALHCYVSNKCDTDIKIVRLLLSR----GVER-----LCRNNEGLTPLGVYSKRKYVKSQIVHLLISS-YSNASNEL  109 (672)
T ss_pred             CCCcHHHHHHHcCCcCcHHHHHHHHhC----CCCC-----cccCCCCCChHHHHHHcCCCcHHHHHHHHhc-CCCCCccc
Confidence            4678999999997   59999999987    6665     578999999999999977  79999999997 55  4477


Q ss_pred             CCCCCCcHHHHHHH--cCCHHHHHHHHH-CCCCCCCCCC-----CCCcHHHHHHHcCCHHHHHHHHhCCCCCC-------
Q 016683           86 QDEDGETPLLHAAR--QGHTETAKYLFE-HGANPTIPSN-----LGATALHHSAGIGNIELLTYLLSKGAEVD-------  150 (384)
Q Consensus        86 ~~~~g~t~L~~A~~--~g~~~~v~~Ll~-~g~~~~~~~~-----~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-------  150 (384)
                      .+..+.+||+.++.  +++.++|++|++ .+++++....     .|.+|++++...++++++++|+++|++++       
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            77779999999999  889999999996 7788876633     78999999999999999999999999984       


Q ss_pred             -CCCCCC-CHhHHH------HHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHH-----------
Q 016683          151 -SESDAG-TPLIWA------AGHGQQEAVKVLLEHHANPNAETEDNITPLLS--AVAAGSLTCLDLLIQ-----------  209 (384)
Q Consensus       151 -~~~~~~-~~l~~A------~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~--A~~~~~~~~v~~Ll~-----------  209 (384)
                       ...... +.||+.      ...++.+++++|+++|++++.+|..|.||||+  +...++.+++++|++           
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~  269 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDI  269 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccc
Confidence             112222 445533      45678999999999999999999999999995  445577999999999           


Q ss_pred             ---------------------cCCCccc--------------------c-CCCch---------------------HHHH
Q 016683          210 ---------------------AGANANI--------------------V-AGGAT---------------------PLHI  226 (384)
Q Consensus       210 ---------------------~g~~~~~--------------------~-~~g~t---------------------~L~~  226 (384)
                                           +|+|...                    . ..|.+                     .||.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~  349 (672)
T PHA02730        270 SQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLIN  349 (672)
T ss_pred             cchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHH
Confidence                                 7888755                    1 23433                     5666


Q ss_pred             HHhhC---CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC----HHHHHhhcCCCCC
Q 016683          227 AADIG---STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN----REAVEILFPLTSE  278 (384)
Q Consensus       227 A~~~~---~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~~~~  278 (384)
                      -...+   +.+++++|+++||++|.. ..|.||||+|+..++    .+++++|+++++.
T Consensus       350 Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~  407 (672)
T PHA02730        350 YLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGH  407 (672)
T ss_pred             HHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCC
Confidence            66655   689999999999999986 799999999998875    8999999998763

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-32  Score=258.92  Aligned_cols=259  Identities=13%  Similarity=0.115  Sum_probs=199.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCc-------CCCCCCC-cHHHHHH------HcCCHHHHHHHHHCCCCCCCCC
Q 016683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVD-------TQDEDGE-TPLLHAA------RQGHTETAKYLFEHGANPTIPS  120 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-------~~~~~g~-t~L~~A~------~~g~~~~v~~Ll~~g~~~~~~~  120 (384)
                      .|.+|+++|...++.++|++|++. |++++       ..+..+. |.||+++      .+++.+++++|+++|++++.+|
T Consensus       154 ~~~~~~yl~~~~~~~eIvklLi~~-g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd  232 (672)
T PHA02730        154 LGLVDIYVTTPNPRPEVLLWLLKS-ECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRD  232 (672)
T ss_pred             cchhhhhHhcCCCchHHHHHHHHc-CCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCC
Confidence            789999999999999999999998 99985       2334444 4466444      4568999999999999999999


Q ss_pred             CCCCcHHHH--HHHcCCHHHHHHHHh--------------------------------CCCCCCC---------------
Q 016683          121 NLGATALHH--SAGIGNIELLTYLLS--------------------------------KGAEVDS---------------  151 (384)
Q Consensus       121 ~~g~t~L~~--A~~~~~~~~~~~Ll~--------------------------------~~~~~~~---------------  151 (384)
                      ..|.||||+  +...|+.+++++|++                                +|++...               
T Consensus       233 ~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  312 (672)
T PHA02730        233 EGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVM  312 (672)
T ss_pred             CCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhh
Confidence            999999995  555677999999999                                5666533               


Q ss_pred             -----CCCCC-C---------------------HhHHHHHcC---CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC-
Q 016683          152 -----ESDAG-T---------------------PLIWAAGHG---QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS-  200 (384)
Q Consensus       152 -----~~~~~-~---------------------~l~~A~~~~---~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~-  200 (384)
                           .+..+ +                     .|+.-...+   +.+++++|+++|++++.. ..|.||||+|+..++ 
T Consensus       313 ~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn  391 (672)
T PHA02730        313 RSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNN  391 (672)
T ss_pred             hccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCC
Confidence                 11111 2                     455555544   689999999999999985 789999999988875 


Q ss_pred             ---HHHHHHHHHcCC--Ccccc-CCCchHHHH---HHhhC---------CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 016683          201 ---LTCLDLLIQAGA--NANIV-AGGATPLHI---AADIG---------STEIIKCLLKAGADPNVTDEDGQKPIQVAAA  262 (384)
Q Consensus       201 ---~~~v~~Ll~~g~--~~~~~-~~g~t~L~~---A~~~~---------~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  262 (384)
                         .+++++|+++|+  +++.. ..|.||||.   |...+         ..+++++|+++|++++.+|..|+||||+|+.
T Consensus       392 ~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~  471 (672)
T PHA02730        392 IVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVD  471 (672)
T ss_pred             cchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHH
Confidence               899999999998  46655 679999984   33232         2357999999999999999999999999999


Q ss_pred             cCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhHHHHHhhhhcCCCC
Q 016683          263 RGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPK  315 (384)
Q Consensus       263 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (384)
                      .++.+++++|+++++.........+.+++.++........+..+.+.+.++..
T Consensus       472 ~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        472 VNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             hCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence            99999999999998865555443345555544433234455666666666543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.5e-34  Score=284.90  Aligned_cols=260  Identities=33%  Similarity=0.451  Sum_probs=206.3

Q ss_pred             hhhhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCC
Q 016683            9 LAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDE   88 (384)
Q Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~   88 (384)
                      ........+++.|++.|+.+.++.++..    |..     .+.....|.||||.|+..++..+++.+++. +++.+..+.
T Consensus       369 ~a~~k~~~pl~la~~~g~~~~v~Lll~~----ga~-----~~~~gk~gvTplh~aa~~~~~~~v~l~l~~-gA~~~~~~~  438 (1143)
T KOG4177|consen  369 QAEEKGFTPLHLAVKSGRVSVVELLLEA----GAD-----PNSAGKNGVTPLHVAAHYGNPRVVKLLLKR-GASPNAKAK  438 (1143)
T ss_pred             cccccCCcchhhhcccCchhHHHhhhhc----cCC-----cccCCCCCcceeeehhhccCcceEEEEecc-CCChhhHhh
Confidence            3444455566667777777777666665    322     355666677777777777777777777765 777777777


Q ss_pred             CCCcHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcC
Q 016683           89 DGETPLLHAARQG-HTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG  166 (384)
Q Consensus        89 ~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~  166 (384)
                      .|.||+|+|+..| ..++...+++.|.+++.....|.||||+|+..|+.+++..|++.++..+.....+ +++|.+...+
T Consensus       439 lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~  518 (1143)
T KOG4177|consen  439 LGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADED  518 (1143)
T ss_pred             cCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhh
Confidence            7777777777777 6677777777777777777777777777777777777777777776666555555 7777777777


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCC
Q 016683          167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGAD  245 (384)
Q Consensus       167 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  245 (384)
                      ...+++.++++|++++.++..|+||||.|+..|+..+|++|+++|++++.. +.|+||||.||..|+.+++.+|+++|++
T Consensus       519 ~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~  598 (1143)
T KOG4177|consen  519 TVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS  598 (1143)
T ss_pred             hHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC
Confidence            777888888888888889999999999999999999999999999999888 8899999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 016683          246 PNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       246 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                      +|..|.+|.|||++|+..|+.++++.|+..+..
T Consensus       599 vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  599 VNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             CCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            999999999999999999999999999887765

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=4.5e-34  Score=281.66  Aligned_cols=295  Identities=30%  Similarity=0.432  Sum_probs=259.0

Q ss_pred             hhhhhhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCC
Q 016683            7 HALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ   86 (384)
Q Consensus         7 ~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~   86 (384)
                      +....+.+..++|.+++.|..++...+.....+         ...-+..|.||+|.|+..|..++++.++.+ |.+++..
T Consensus       334 ~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~---------~~~a~~k~~~pl~la~~~g~~~~v~Lll~~-ga~~~~~  403 (1143)
T KOG4177|consen  334 PNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQ---------RRQAEEKGFTPLHLAVKSGRVSVVELLLEA-GADPNSA  403 (1143)
T ss_pred             ccccCcCCcccccHhhhhhhHHHHHHhhccccc---------cCcccccCCcchhhhcccCchhHHHhhhhc-cCCcccC
Confidence            344556677889999999999966666655222         123467899999999999999999999998 9999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCC-CHhHHHHH
Q 016683           87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG-NIELLTYLLSKGAEVDSESDAG-TPLIWAAG  164 (384)
Q Consensus        87 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~  164 (384)
                      +..|.||||.|+..++..+|+.++++|++++..+..|.||+|+|+..| ..++...+++.|.+++.....+ ||||.|..
T Consensus       404 gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq  483 (1143)
T KOG4177|consen  404 GKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQ  483 (1143)
T ss_pred             CCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhc
Confidence            999999999999999999999999999999999999999999999999 8899999999999999888777 99999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCC
Q 016683          165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAG  243 (384)
Q Consensus       165 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g  243 (384)
                      .|+.++++.+++.++..+.....+.+++|.+...+...+++.++++|++++.. ..|.||||+|+.+|+.++|++|+++|
T Consensus       484 ~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~g  563 (1143)
T KOG4177|consen  484 EGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHG  563 (1143)
T ss_pred             cCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCC
Confidence            99999999999999999999999999999999999999999999999999988 77999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhHHHHHhhhhcCCC
Q 016683          244 ADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAP  314 (384)
Q Consensus       244 a~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  314 (384)
                      +|++.+++.|+||||.|+..|+.+|+.+|+++++.....+-   ++.+.+..+.....+...+.++..+..
T Consensus       564 Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~---~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  564 ADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADL---DGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             ccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccc---cCcchhHHHHHhcccchhhHHHhccCc
Confidence            99999999999999999999999999999999875443333   333444445555556666666666555

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=4.2e-33  Score=254.80  Aligned_cols=212  Identities=35%  Similarity=0.555  Sum_probs=194.9

Q ss_pred             hhhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCC-C
Q 016683           10 AVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD-E   88 (384)
Q Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~   88 (384)
                      +.......++.|++.|+++.|+.+++..   +     ..++..|.+|.|+||.|+.+++++++++|+++ |+++|..+ .
T Consensus        40 e~d~~~~~~v~A~q~G~l~~v~~lve~~---g-----~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~~gG~  110 (600)
T KOG0509|consen   40 EEDSSLDDIVKATQYGELETVKELVESE---G-----ESVNNPDREGVTLLHWAAINNRLDVARYLISH-GADVNAIGGV  110 (600)
T ss_pred             ccchhhhhhhhHhhcchHHHHHHHHhhc---C-----cCCCCCCcCCccceeHHHHcCcHHHHHHHHHc-CCCccccCCC
Confidence            4555678899999999999999999862   2     22356788999999999999999999999998 99999998 6


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCC
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ  167 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~  167 (384)
                      -+.||||+|+++|+..+|++|+++|+|++..|.+|.+|||.|+..|+..++-+|+.++++++..+..+ |||++|+.+|+
T Consensus       111 l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~  190 (600)
T KOG0509|consen  111 LGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGF  190 (600)
T ss_pred             CCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcc
Confidence            78999999999999999999999999999999999999999999999999999999999999988777 99999999999


Q ss_pred             HHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhh
Q 016683          168 QEAVKVLLEHHANPNAET-EDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADI  230 (384)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~  230 (384)
                      ...+..|++.++.+...| ..|+||||+|+..|+..++..+++.|++.+.. .+|.||+.+|.+.
T Consensus       191 ~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  191 ALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            988999999999999888 89999999999999999999777777888877 6789999999877

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.9e-32  Score=254.09  Aligned_cols=116  Identities=19%  Similarity=0.197  Sum_probs=99.2

Q ss_pred             HHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHH-cCCHHHHHHHHHhCCCCC---------------
Q 016683           20 NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAR-EGKTDVCKYLLEELKLDV---------------   83 (384)
Q Consensus        20 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~-~g~~~~v~~Ll~~~~~~~---------------   83 (384)
                      .|...|++|+|+.|+++    |+++     +.++..|.||+|+|+. .|+.+++++|++. |+++               
T Consensus        78 ~~s~n~~lElvk~LI~~----GAdv-----N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~-Gad~~~~~~~g~~~~~~~~  147 (631)
T PHA02792         78 LCSDNIDIELLKLLISK----GLEI-----NSIKNGINIVEKYATTSNPNVDVFKLLLDK-GIPTCSNIQYGYKIIIEQI  147 (631)
T ss_pred             HHHhcccHHHHHHHHHc----CCCc-----ccccCCCCcceeEeecCCCChHHHHHHHHC-CCCcccccccCcchhhhhc
Confidence            35577999999999998    6655     4667779999999966 6999999999998 8753               


Q ss_pred             ---------------------cCCCCCCCcHHHHHHHcC-------CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-
Q 016683           84 ---------------------DTQDEDGETPLLHAARQG-------HTETAKYLFEHGANPTIPSNLGATALHHSAGIG-  134 (384)
Q Consensus        84 ---------------------~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-  134 (384)
                                           |..|..|.||||+|+.++       +.++++.|+++|++++..|..|.||||+|+.+. 
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~  227 (631)
T PHA02792        148 TRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCD  227 (631)
T ss_pred             ccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHccc
Confidence                                 234567999999999999       899999999999999999999999999998888 


Q ss_pred             -CHHHHHHHHhC
Q 016683          135 -NIELLTYLLSK  145 (384)
Q Consensus       135 -~~~~~~~Ll~~  145 (384)
                       +.+++++|++.
T Consensus       228 i~~ei~~~L~~~  239 (631)
T PHA02792        228 IKREIFDALFDS  239 (631)
T ss_pred             chHHHHHHHHhc
Confidence             77888888763

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.2e-32  Score=240.40  Aligned_cols=221  Identities=31%  Similarity=0.448  Sum_probs=135.9

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCC--------CC
Q 016683           17 QFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ--------DE   88 (384)
Q Consensus        17 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--------~~   88 (384)
                      ....|++.|++..+..|+-.-+.  .++..  .-..+.+|.|||-+||++||.++|++|++++++++...        ..
T Consensus         7 ~~~naa~~g~l~~l~~ll~~~s~--~ei~~--l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~I   82 (615)
T KOG0508|consen    7 VVINAARDGKLQLLAKLLINSSN--EEIIS--LIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETI   82 (615)
T ss_pred             HHHHHhhhhhHHHHHHHHhCCch--HHHHH--HhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCccc
Confidence            34588888998888877754111  00111  11234567788888888888888888888777765543        23


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCC
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ  167 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~  167 (384)
                      .|-+||-.|+..||.++|+.|+++|+++|.......|||..||.-|+.+++++|+++|++++..+..+ |.|++||.+|+
T Consensus        83 egappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh  162 (615)
T KOG0508|consen   83 EGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGH  162 (615)
T ss_pred             CCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCc
Confidence            45566666666666666666666666666655555566666666666666666666666665555544 56666666666


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCchHHHHHHhhCCHHHHHHHHH
Q 016683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLK  241 (384)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  241 (384)
                      .+++++|++.|+|+|.++..|+|+||.++..|+++++++|+.+|+.++....|.|||..|+..|+.++|++|+.
T Consensus       163 ~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  163 VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            66666666666666666666666666666666666666666666555555445566666666666666665554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.8e-30  Score=217.47  Aligned_cols=179  Identities=20%  Similarity=0.237  Sum_probs=135.4

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCC-CCCCcHHHH
Q 016683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQG--HTETAKYLFEHGANPTIPS-NLGATALHH  129 (384)
Q Consensus        53 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~  129 (384)
                      ...+.||||.|+..|+.++|+.|++.    ++..|..|.||||+|+.++  +.+++++|+++|++++..+ ..|.||||+
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH   93 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence            34567777777777777777777753    3556677777777777644  6777777777777777765 356777776


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH--cCCHHHHHHH
Q 016683          130 SAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA--AGSLTCLDLL  207 (384)
Q Consensus       130 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~--~~~~~~v~~L  207 (384)
                      |+..+                             ..++.+++++|+++|++++..+..|.||||.|+.  .++.+++++|
T Consensus        94 a~~~~-----------------------------~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~L  144 (209)
T PHA02859         94 YLSFN-----------------------------KNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLL  144 (209)
T ss_pred             HHHhC-----------------------------ccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            54321                             0135677777777777788888888888888775  3578888888


Q ss_pred             HHcCCCcccc-CCCchHHHH-HHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 016683          208 IQAGANANIV-AGGATPLHI-AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG  264 (384)
Q Consensus       208 l~~g~~~~~~-~~g~t~L~~-A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  264 (384)
                      +++|++++.. ..|.||||. |+..++.+++++|+++|++++.+|..|+|||++|..++
T Consensus       145 i~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        145 IDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            8888888776 678899995 56678999999999999999999999999999998664

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.8e-30  Score=233.41  Aligned_cols=205  Identities=19%  Similarity=0.166  Sum_probs=173.9

Q ss_pred             CHHH-HHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHH--cCCHHH
Q 016683           68 KTDV-CKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPT------IPSNLGATALHHSAG--IGNIEL  138 (384)
Q Consensus        68 ~~~~-v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~--~~~~~~  138 (384)
                      ..++ -++++.+ |+++|....+|     +|+..+..+++++|+++|++++      ..+..++|+||.++.  .|+.++
T Consensus        60 ~~~~~~~~~~~~-~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~ei  133 (437)
T PHA02795         60 PVDVLYDYFRIH-RDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDI  133 (437)
T ss_pred             HHHHHHHHHHHc-Ccchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHH
Confidence            3444 4566666 88888887777     8888999999999999999988      677779999999998  889999


Q ss_pred             HHHHHhCCCCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCC------CCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 016683          139 LTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAE------TEDNITPLLSAVAAGSLTCLDLLIQAGA  212 (384)
Q Consensus       139 ~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~------~~~g~t~l~~A~~~~~~~~v~~Ll~~g~  212 (384)
                      +++|+++|++++.. .+.||+|.|+..++.+++++|+++|++....      +..+.+++|.|...++.+++++|+++|+
T Consensus       134 V~~LI~~GADIn~~-~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GA  212 (437)
T PHA02795        134 VDFMVDHGAVIYKI-ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIE  212 (437)
T ss_pred             HHHHHHCCCCCCCC-CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcC
Confidence            99999999998763 3358999999999999999999999753222      1347789999999999999999999999


Q ss_pred             Ccccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--------CHHHHHhhcCCCCCC
Q 016683          213 NANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG--------NREAVEILFPLTSED  279 (384)
Q Consensus       213 ~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~--------~~~~v~~Ll~~~~~~  279 (384)
                      +++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|        +.+++++|+++++..
T Consensus       213 DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence            99987 78999999999999999999999999999999999999999999988        468999999877643

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.6e-29  Score=214.24  Aligned_cols=149  Identities=15%  Similarity=0.126  Sum_probs=121.2

Q ss_pred             hhcccCCCCcHHHHHHHcC--CHHHHHHHHHhCCCCCcCCC-CCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCC
Q 016683           49 ADIKDANKRGALHFAAREG--KTDVCKYLLEELKLDVDTQD-EDGETPLLHAARQ---GHTETAKYLFEHGANPTIPSNL  122 (384)
Q Consensus        49 ~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~  122 (384)
                      .+..+..|.||||+|+..+  +.+++++|++. |++++.++ ..|.||||+|+..   ++.+++++|+++|++++..|..
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~  122 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDED  122 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCC
Confidence            4567889999999999865  89999999998 99999997 4899999998864   4799999999999999999999


Q ss_pred             CCcHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCC-CHhHH-HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 016683          123 GATALHHSAG--IGNIELLTYLLSKGAEVDSESDAG-TPLIW-AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA  198 (384)
Q Consensus       123 g~t~L~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~-A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~  198 (384)
                      |.||||+|+.  .++.+++++|++.|++++..+..+ ||||. ++..++.+++++|+++|++++.++..|.|||++|..+
T Consensus       123 G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        123 GKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhh
Confidence            9999999875  356778888887777776665544 77774 4556677777777777777777777777777777654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.3e-29  Score=227.97  Aligned_cols=207  Identities=18%  Similarity=0.168  Sum_probs=180.3

Q ss_pred             HHHHcCCHHHHHHHHHhCCCCCc------CCCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q 016683           62 FAAREGKTDVCKYLLEELKLDVD------TQDEDGETPLLHAAR--QGHTETAKYLFEHGANPTIPSNLGATALHHSAGI  133 (384)
Q Consensus        62 ~A~~~g~~~~v~~Ll~~~~~~~~------~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  133 (384)
                      +|+..+..+++++|+++ |++++      .++..++|+||+|+.  .|+.++|++|+++|++++..  .+.||+|.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~-~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSK-NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhc-ccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc
Confidence            89999999999999998 99988      788889999999999  89999999999999999874  458999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCC-------CCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 016683          134 GNIELLTYLLSKGAEVDSES-------DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL  206 (384)
Q Consensus       134 ~~~~~~~~Ll~~~~~~~~~~-------~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~  206 (384)
                      ++.+++++|+++|++.....       .+.+++|.|...++.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVel  239 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSW  239 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999998532221       13388999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCcccc-CCCchHHHHHHhhCC--------HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 016683          207 LIQAGANANIV-AGGATPLHIAADIGS--------TEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (384)
Q Consensus       207 Ll~~g~~~~~~-~~g~t~L~~A~~~~~--------~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (384)
                      |+++|++++.. ..|+||||+|+..|+        .+++++|+++|++++..+..   .+..  ...+.++++.++.+.
T Consensus       240 LL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~---~~~~--~~~n~~~ik~lI~y~  313 (437)
T PHA02795        240 LLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLA---ILNN--TIENHDVIKLCIKYF  313 (437)
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHH---hhhc--ccchHHHHHHHHHHH
Confidence            99999999988 889999999999984        69999999999998875432   2221  112567887776543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.8e-28  Score=231.18  Aligned_cols=272  Identities=14%  Similarity=0.150  Sum_probs=210.3

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHH-HHHcCCHHHHHHHHHhCCCCCcCCCCCC
Q 016683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHF-AAREGKTDVCKYLLEELKLDVDTQDEDG   90 (384)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   90 (384)
                      +++.++|+.=..+.+.-+=..++-.+-.        ..+..+.+|.+++|+ |+.+|++++|++|+++ |+++|.++..|
T Consensus        35 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~-GAdvN~~~n~~  105 (631)
T PHA02792         35 YDGETPLKAYVTKKNNNIKNDVVILLLS--------SVDYKNINDFDIFEYLCSDNIDIELLKLLISK-GLEINSIKNGI  105 (631)
T ss_pred             cCCCccHHHHHhhhhhhHHHHHHHHHHh--------CCCcCccCCccHHHHHHHhcccHHHHHHHHHc-CCCcccccCCC
Confidence            4455666665555554333223222111        113456778889986 5558999999999998 99999999999


Q ss_pred             CcHHHHHHH-cCCHHHHHHHHHCCCCCC------------------------------------CCCCCCCcHHHHHHHc
Q 016683           91 ETPLLHAAR-QGHTETAKYLFEHGANPT------------------------------------IPSNLGATALHHSAGI  133 (384)
Q Consensus        91 ~t~L~~A~~-~g~~~~v~~Ll~~g~~~~------------------------------------~~~~~g~t~L~~A~~~  133 (384)
                      .||+|+|+. .++.+++++|+++|++++                                    ..|..|.||||+|+.+
T Consensus       106 ~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~  185 (631)
T PHA02792        106 NIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIIT  185 (631)
T ss_pred             CcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhh
Confidence            999999976 699999999999998732                                    2345699999999999


Q ss_pred             C-------CHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcC--CHHHHHHHHhCC-------------------------
Q 016683          134 G-------NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG--QQEAVKVLLEHH-------------------------  178 (384)
Q Consensus       134 ~-------~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~--~~~~~~~Ll~~~-------------------------  178 (384)
                      +       +.++++.|+++|++++..+..| ||||+|+.+.  +.+++++|++..                         
T Consensus       186 ~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~i  265 (631)
T PHA02792        186 RSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKI  265 (631)
T ss_pred             CCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCc
Confidence            9       8999999999999998877666 9999999988  777777776531                         


Q ss_pred             ------------------------------------------------------------------CCCCCCCCCCCCHH
Q 016683          179 ------------------------------------------------------------------ANPNAETEDNITPL  192 (384)
Q Consensus       179 ------------------------------------------------------------------~~~~~~~~~g~t~l  192 (384)
                                                                                        ++..  ......++
T Consensus       266 d~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~~~n~~  343 (631)
T PHA02792        266 DNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY--RFKHINKY  343 (631)
T ss_pred             cHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc--cCCcchHH
Confidence                                                                              1110  11245678


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCcccc-CC--CchHHHHHHhhCCH---HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q 016683          193 LSAVAAGSLTCLDLLIQAGANANIV-AG--GATPLHIAADIGST---EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNR  266 (384)
Q Consensus       193 ~~A~~~~~~~~v~~Ll~~g~~~~~~-~~--g~t~L~~A~~~~~~---~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  266 (384)
                      +.|+..|+.+++++|+++|++++.. ..  +.||||+|+..+..   +++++|+++|+++|.+|..|.||||+|+..++.
T Consensus       344 ~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~  423 (631)
T PHA02792        344 FQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSV  423 (631)
T ss_pred             HHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCH
Confidence            8899999999999999999999876 33  46999998877654   468999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCCchhhHHHHHH
Q 016683          267 EAVEILFPLTSEDPSIPKWTVDGILEYMQ  295 (384)
Q Consensus       267 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  295 (384)
                      +++++|++++.... ..+..+.+...++.
T Consensus       424 eivelLLs~GADIN-~kD~~G~TpL~~A~  451 (631)
T PHA02792        424 SLVEWLIDNGADIN-ITTKYGSTCIGICV  451 (631)
T ss_pred             HHHHHHHHCCCCCC-CcCCCCCCHHHHHH
Confidence            99999999976543 34444555555543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.96  E-value=1.4e-29  Score=234.55  Aligned_cols=261  Identities=25%  Similarity=0.334  Sum_probs=227.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhcCCC----ccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCC
Q 016683           15 VQQFLNAACTGNLDLLKKIAKQLDDQGKG----LSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDG   90 (384)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   90 (384)
                      -+.+..|++.||.+.+..+++.-......    ..+-..+..|.+|.|+||.||.+|+.++++.|++. .+-++..+..|
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~-ea~ldl~d~kg   82 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY-EALLDLCDTKG   82 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcc-hhhhhhhhccC
Confidence            35689999999999999999874331111    12334577899999999999999999999999987 88889999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHH
Q 016683           91 ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQE  169 (384)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~  169 (384)
                      .+|||+|++.|+.++|++|+.++..+|..+..|.||||.|+..|+.+++.+|+++|++.-..+..+ |++..|++.|..+
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhH
Confidence            999999999999999999999999999999999999999999999999999999999987777655 9999999999999


Q ss_pred             HHHHHHhCCCCC--------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCchHHHHHHhhCCHHHHHHHHH
Q 016683          170 AVKVLLEHHANP--------NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLK  241 (384)
Q Consensus       170 ~~~~Ll~~~~~~--------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  241 (384)
                      +++.|++...+.        ..++..+.+|+|.|+++|+.++++.|++.|.++|......|+||.|+..|..++|.+|++
T Consensus       163 Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~  242 (854)
T KOG0507|consen  163 VVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLE  242 (854)
T ss_pred             HHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHh
Confidence            999999863322        335566789999999999999999999999999998778899999999999999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcC---CHHHHHhhcCCC
Q 016683          242 AGADPNVTDEDGQKPIQVAAARG---NREAVEILFPLT  276 (384)
Q Consensus       242 ~ga~~~~~~~~g~t~l~~A~~~~---~~~~v~~Ll~~~  276 (384)
                      .|.+..++|.+|+|+|++-...-   ..+++-++....
T Consensus       243 ~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~~~  280 (854)
T KOG0507|consen  243 IGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVKNFE  280 (854)
T ss_pred             hccccccccccchHHHHHHHhcchhhhhhhhhhhhccc
Confidence            99999999999999999876653   345555555443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.96  E-value=3.6e-29  Score=199.42  Aligned_cols=248  Identities=25%  Similarity=0.346  Sum_probs=212.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCc
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   92 (384)
                      +....++.++..|-.+.-..+....+           ..++..|..-+-.+...|+.+++.....-.+..+...+.+|++
T Consensus        30 ~q~a~~~~~~~m~~t~p~~~l~~~~s-----------~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~   98 (296)
T KOG0502|consen   30 TQIAELFEQVEMGTTEPRCALTAEIS-----------ALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWS   98 (296)
T ss_pred             HHHHHHHHHhhccccchhHHHHHHHH-----------HHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhh
Confidence            44567888888888887777776532           3455667778888899999888877776545556667778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHH
Q 016683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAV  171 (384)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~  171 (384)
                      +++.|+-.|+...+..++.+|+..|..+-.+.+|+.+++...+.+.+..+.++.  +|..+..| |||.||+..|+..+|
T Consensus        99 ~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~--VN~~De~GfTpLiWAaa~G~i~vV  176 (296)
T KOG0502|consen   99 ALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK--VNACDEFGFTPLIWAAAKGHIPVV  176 (296)
T ss_pred             hhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhcc--ccCccccCchHhHHHHhcCchHHH
Confidence            999999999999999999999999999999999999999888888877776654  44555555 999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCC
Q 016683          172 KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD  250 (384)
Q Consensus       172 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  250 (384)
                      ++|++.|++++..-+...++|.+|+..|..++|++|+.++.|+|.. .+|.|||.+|++.|+.++|+.|++.|++++..+
T Consensus       177 ~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~  256 (296)
T KOG0502|consen  177 QFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQED  256 (296)
T ss_pred             HHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCccccc
Confidence            9999999999988888889999999999999999999999999988 889999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHhhcC
Q 016683          251 EDGQKPIQVAAARGNREAVEILFP  274 (384)
Q Consensus       251 ~~g~t~l~~A~~~~~~~~v~~Ll~  274 (384)
                      ..|.+++++|+..|+. +|+..++
T Consensus       257 dsGy~~mdlAValGyr-~Vqqvie  279 (296)
T KOG0502|consen  257 DSGYWIMDLAVALGYR-IVQQVIE  279 (296)
T ss_pred             ccCCcHHHHHHHhhhH-HHHHHHH
Confidence            9999999999999998 5555544

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=6e-28  Score=192.49  Aligned_cols=227  Identities=24%  Similarity=0.303  Sum_probs=196.5

Q ss_pred             HHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHH
Q 016683           20 NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAAR   99 (384)
Q Consensus        20 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   99 (384)
                      -+.+.|+.++..+.+.-        .+.-....+..|+++++.|+-.|+.+.+..++.+ +...|..+-.+.+|+.+++.
T Consensus        68 ~~~~s~nsd~~v~s~~~--------~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN-~~rgnevs~~p~s~~slsVh  138 (296)
T KOG0502|consen   68 VAVRSGNSDVAVQSAQL--------DPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTN-GARGNEVSLMPWSPLSLSVH  138 (296)
T ss_pred             hhhhcCCcHHHHHhhcc--------CCCCCCCCCchhhhhhhhcCCCCCcceeeeeecc-cccCCccccccCChhhHHHH
Confidence            45666777777766543        2223344577799999999999999999999998 99999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCC
Q 016683          100 QGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH  178 (384)
Q Consensus       100 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~  178 (384)
                      .-+.+.+..+.++  .+|..|..|.|||.+|+..|+++++++|++.|++++...... ++|.+|++.|..++|++|++.+
T Consensus       139 ql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~  216 (296)
T KOG0502|consen  139 QLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTRE  216 (296)
T ss_pred             HHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcC
Confidence            9888888887765  677889999999999999999999999999999998776665 9999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q 016683          179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPI  257 (384)
Q Consensus       179 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  257 (384)
                      .|+|..|.+|.|||.+|++.++.++++.|++.|++++.. ..|++++..|+..|+. +|+..++..+..+.+|+.-+||+
T Consensus       217 vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~  295 (296)
T KOG0502|consen  217 VDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPL  295 (296)
T ss_pred             CCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCC
Confidence            999999999999999999999999999999999999877 7899999999999998 88999988888788887777776


Q ss_pred             H
Q 016683          258 Q  258 (384)
Q Consensus       258 ~  258 (384)
                      |
T Consensus       296 ~  296 (296)
T KOG0502|consen  296 H  296 (296)
T ss_pred             C
Confidence            4

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.95  E-value=6.9e-27  Score=235.07  Aligned_cols=239  Identities=23%  Similarity=0.184  Sum_probs=175.0

Q ss_pred             hhhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHH-HHHHcCCHHHHHHHHHhCCCCCcCCCC
Q 016683           10 AVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALH-FAAREGKTDVCKYLLEELKLDVDTQDE   88 (384)
Q Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~   88 (384)
                      ..++.-+.|+.||+.||.+.++.+++...       ....+..|..|.|||| .|+.+++.++++.|++. |.    .+.
T Consensus        13 ~~~~~~~~~l~A~~~g~~~~v~~lL~~~~-------~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~-g~----~~~   80 (743)
T TIGR00870        13 PLSDEEKAFLPAAERGDLASVYRDLEEPK-------KLNINCPDRLGRSALFVAAIENENLELTELLLNL-SC----RGA   80 (743)
T ss_pred             CCCHHHHHHHHHHHcCCHHHHHHHhcccc-------ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhC-CC----CCC
Confidence            34567788999999999999999997621       2234667889999999 88889999999999987 55    677


Q ss_pred             CCCcHHHHHHHcC---CHHHHHHHHHCCCCC----------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC--
Q 016683           89 DGETPLLHAARQG---HTETAKYLFEHGANP----------TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES--  153 (384)
Q Consensus        89 ~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~--  153 (384)
                      .|.||||.|+..+   ...++..+...+.+.          ...+..|.||||+|+..|+.+++++|+++|++++...  
T Consensus        81 ~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~  160 (743)
T TIGR00870        81 VGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACG  160 (743)
T ss_pred             cChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCC
Confidence            8999999998732   233445555444221          1123469999999999999999999999999987542  


Q ss_pred             -------------CCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC---------CHHHHHHHHHcC
Q 016683          154 -------------DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG---------SLTCLDLLIQAG  211 (384)
Q Consensus       154 -------------~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~---------~~~~v~~Ll~~g  211 (384)
                                   .+.+||+.|+..|+.+++++|+++|++++..|..|+||||+|+..+         ...+.+++++.+
T Consensus       161 ~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll  240 (743)
T TIGR00870       161 DFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLL  240 (743)
T ss_pred             chhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence                         2348888888888888888888888888888888888888888876         233555565554


Q ss_pred             CCc-------ccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 016683          212 ANA-------NIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA  260 (384)
Q Consensus       212 ~~~-------~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  260 (384)
                      ...       +.. .+|.||||+|+..|+.+++++|++.+.+.......+..|.+++
T Consensus       241 ~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~~  297 (743)
T TIGR00870       241 DKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLS  297 (743)
T ss_pred             hccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeeccCcchHhHh
Confidence            443       222 5688888888888888888888875444333333444444444

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.95  E-value=9.4e-27  Score=234.13  Aligned_cols=217  Identities=24%  Similarity=0.241  Sum_probs=180.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHh-CCCCCcCCCCCCCcHHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 016683           55 NKRGALHFAAREGKTDVCKYLLEE-LKLDVDTQDEDGETPLL-HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  132 (384)
                      .+...++.|+..|+.+.++.+++. .+.++|..|..|.|||| .|+.+++.+++++|+++|+    .+..|.||||.|+.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence            467899999999999999999975 26788999999999999 8999999999999999987    57789999999987


Q ss_pred             cC---CHHHHHHHHhCCCCC------C-----CCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCC-------------
Q 016683          133 IG---NIELLTYLLSKGAEV------D-----SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAET-------------  185 (384)
Q Consensus       133 ~~---~~~~~~~Ll~~~~~~------~-----~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-------------  185 (384)
                      .+   ...++..+...+.+.      +     ....+.||||+|+..|+.+++++|+++|++++..+             
T Consensus        92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~  171 (743)
T TIGR00870        92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS  171 (743)
T ss_pred             ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCc
Confidence            32   223444444444221      1     11234599999999999999999999999998653             


Q ss_pred             -CCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhC---------CHHHHHHHHHCCCCC-------C
Q 016683          186 -EDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIG---------STEIIKCLLKAGADP-------N  247 (384)
Q Consensus       186 -~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~---------~~~~v~~Ll~~ga~~-------~  247 (384)
                       ..|.||||.|+..|+.+++++|+++|++++.. ..|+||||+|+..+         ...+.+++++.++..       +
T Consensus       172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~  251 (743)
T TIGR00870       172 FYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEV  251 (743)
T ss_pred             ccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhh
Confidence             25899999999999999999999999999877 77999999999987         234566677665553       6


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 016683          248 VTDEDGQKPIQVAAARGNREAVEILFPL  275 (384)
Q Consensus       248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (384)
                      ..|.+|.||||+|+..|+.+++++|++.
T Consensus       252 i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       252 ILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            7899999999999999999999999983

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=9.8e-26  Score=228.00  Aligned_cols=175  Identities=26%  Similarity=0.344  Sum_probs=105.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 016683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG  134 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  134 (384)
                      .+.++||.||..|+.++++.|++. |+++|..|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKA-KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAK  602 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhC
Confidence            455666666666777777666665 6666666666777777777777777777777766666666666667776666666


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 016683          135 NIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA  214 (384)
Q Consensus       135 ~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~  214 (384)
                      +.+++++|++.+...+. .                                 .+.++||.|+..|+.+++++|+++|+++
T Consensus       603 ~~~iv~~L~~~~~~~~~-~---------------------------------~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi  648 (823)
T PLN03192        603 HHKIFRILYHFASISDP-H---------------------------------AAGDLLCTAAKRNDLTAMKELLKQGLNV  648 (823)
T ss_pred             CHHHHHHHHhcCcccCc-c---------------------------------cCchHHHHHHHhCCHHHHHHHHHCCCCC
Confidence            66666666655543321 1                                 2334555555555555555555555555


Q ss_pred             ccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCC-CcHHHHHHHcC
Q 016683          215 NIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDG-QKPIQVAAARG  264 (384)
Q Consensus       215 ~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-~t~l~~A~~~~  264 (384)
                      +.. ..|+||||+|+..|+.+++++|+++|++++..|..| .||++++....
T Consensus       649 n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        649 DSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHH
Confidence            444 445555555555555555555555555555555555 55555554433

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=2.9e-25  Score=224.64  Aligned_cols=165  Identities=24%  Similarity=0.281  Sum_probs=125.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCC
Q 016683           88 EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQ  167 (384)
Q Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~  167 (384)
                      ..+.++|+.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.+++                            
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v----------------------------  574 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCV----------------------------  574 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHH----------------------------
Confidence            3455666666666666667666666666666666666666665555555554                            


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCchHHHHHHhhCCHHHHHHHHHCCCCCC
Q 016683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPN  247 (384)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  247 (384)
                          ++|+++|++++.+|..|+||||.|+..|+.+++++|++.++..+. ..+.++||.|+..|+.+++++|+++|+++|
T Consensus       575 ----~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~-~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin  649 (823)
T PLN03192        575 ----LVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP-HAAGDLLCTAAKRNDLTAMKELLKQGLNVD  649 (823)
T ss_pred             ----HHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc-ccCchHHHHHHHhCCHHHHHHHHHCCCCCC
Confidence                455555555666677778888888888888888888776655442 457799999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCC
Q 016683          248 VTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKW  285 (384)
Q Consensus       248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  285 (384)
                      .+|..|.||||+|+..|+.+++++|++++.+....+..
T Consensus       650 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~  687 (823)
T PLN03192        650 SEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTD  687 (823)
T ss_pred             CCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999999999999988765554443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.94  E-value=4e-26  Score=204.87  Aligned_cols=225  Identities=29%  Similarity=0.447  Sum_probs=190.9

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHH
Q 016683           17 QFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLH   96 (384)
Q Consensus        17 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   96 (384)
                      .++.|++.|+.+-++.++..    |.+.     +..+.+|.|+||.||...+.+||++|++. |+++|..|..|+||||.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~----ga~~-----~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPlha  112 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNR----GASP-----NLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPLHA  112 (527)
T ss_pred             HHHhccccccHHHHHHHhcc----CCCc-----cccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcchh
Confidence            58899999999999999986    3332     67788999999999999999999999998 99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCHhHHHHHcCC----HHHH
Q 016683           97 AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK-GAEVDSESDAGTPLIWAAGHGQ----QEAV  171 (384)
Q Consensus        97 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~l~~A~~~~~----~~~~  171 (384)
                      |+..|+..++++|+++|+++...|.+|..|...|......+++..-... |++++           ++..-.    ++=+
T Consensus       113 aascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~ie-----------a~R~~~e~~ml~D~  181 (527)
T KOG0505|consen  113 AASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIE-----------AARKAEEQTMLDDA  181 (527)
T ss_pred             hcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHH-----------HHhhhhHHHHHHHH
Confidence            9999999999999999999999999999999888766666655554432 33321           111111    1122


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCC
Q 016683          172 KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD  250 (384)
Q Consensus       172 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  250 (384)
                      ...+..|...+..+..|-|.||.|+..|..++.++|+++|.+++.. ..||||||.|+.+|..+++++|+++|++.+...
T Consensus       182 ~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t  261 (527)
T KOG0505|consen  182 RQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKT  261 (527)
T ss_pred             HHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhh
Confidence            3344488888888888999999999999999999999999999988 889999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHH
Q 016683          251 EDGQKPIQVAAA  262 (384)
Q Consensus       251 ~~g~t~l~~A~~  262 (384)
                      ..|.||+++|..
T Consensus       262 ~~g~~p~dv~de  273 (527)
T KOG0505|consen  262 KMGETPLDVADE  273 (527)
T ss_pred             hcCCCCccchhh
Confidence            999999999865

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.93  E-value=9.8e-26  Score=209.29  Aligned_cols=233  Identities=30%  Similarity=0.349  Sum_probs=202.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhCC------------CCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q 016683           60 LHFAAREGKTDVCKYLLEELK------------LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL  127 (384)
Q Consensus        60 L~~A~~~g~~~~v~~Ll~~~~------------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L  127 (384)
                      +--|++.|+.+.+..||+..+            ...|..|.+|.|+||.|+.+|+.+++++|+++.+-++..|..|.+||
T Consensus         7 l~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~pl   86 (854)
T KOG0507|consen    7 LIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPL   86 (854)
T ss_pred             HHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceE
Confidence            556999999999999998633            45677889999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 016683          128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL  206 (384)
Q Consensus       128 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~  206 (384)
                      |+|++.|+.+++++++.++...|.....+ +|||.|++.|+.+++.+|+++|+++...+..+.|++..|++.|..++++.
T Consensus        87 hlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~  166 (854)
T KOG0507|consen   87 HLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQM  166 (854)
T ss_pred             EehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHH
Confidence            99999999999999999998777766655 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCccc---------cCCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 016683          207 LIQAGANANI---------VAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (384)
Q Consensus       207 Ll~~g~~~~~---------~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (384)
                      |++.......         ...+.+|||.|+++|+.++++.|++.|.++|.....| |+||.|+.+|..++|.+|++.+.
T Consensus       167 ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gi  245 (854)
T KOG0507|consen  167 LLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGI  245 (854)
T ss_pred             HhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhcc
Confidence            9976332211         1347899999999999999999999999999998766 99999999999999999998765


Q ss_pred             CCCCCCCCchhhHHHHH
Q 016683          278 EDPSIPKWTVDGILEYM  294 (384)
Q Consensus       278 ~~~~~~~~~~~~~~~~~  294 (384)
                      .. .+.+-..++....+
T Consensus       246 n~-h~~n~~~qtaldil  261 (854)
T KOG0507|consen  246 NT-HIKNQHGQTALDII  261 (854)
T ss_pred             cc-ccccccchHHHHHH
Confidence            43 33333344444443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.91  E-value=6.5e-25  Score=210.08  Aligned_cols=258  Identities=27%  Similarity=0.364  Sum_probs=165.0

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCC-CCC
Q 016683           11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ-DED   89 (384)
Q Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~   89 (384)
                      ....-+.|-.||+.|+-|+++.|+.+    |+.+     +.+|..|.+||.+|+-.||..+|+.|+.. .++++.. |..
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~r----gani-----ehrdkkgf~plImaatagh~tvV~~llk~-ha~veaQsdrt  823 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVR----GANI-----EHRDKKGFVPLIMAATAGHITVVQDLLKA-HADVEAQSDRT  823 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHh----cccc-----cccccccchhhhhhcccCchHHHHHHHhh-hhhhhhhcccc
Confidence            33444567778888888888888776    4333     55677777777777777777777777766 5665543 566


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC---CHhHHHHHcC
Q 016683           90 GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG---TPLIWAAGHG  166 (384)
Q Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~---~~l~~A~~~~  166 (384)
                      +.|+|.+||..|+.++|++||..|++-..++....|||.+|...|..+++..|+..|.+++.+....   .||.+|...|
T Consensus       824 kdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmng  903 (2131)
T KOG4369|consen  824 KDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNG  903 (2131)
T ss_pred             cCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcc
Confidence            7777777777777777777777777777777777777777777777777777777776666544221   6666666666


Q ss_pred             CHHHHHHHHhCCCCCC----------------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 016683          167 QQEAVKVLLEHHANPN----------------------------------AETEDNITPLLSAVAAGSLTCLDLLIQAGA  212 (384)
Q Consensus       167 ~~~~~~~Ll~~~~~~~----------------------------------~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~  212 (384)
                      |...++.|++.|.|+|                                  .+-..|.|||+.++..|.+++=+.|+..|+
T Consensus       904 h~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~ga  983 (2131)
T KOG4369|consen  904 HQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGA  983 (2131)
T ss_pred             ccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccc
Confidence            6666666666665554                                  344566777777777777777777777777


Q ss_pred             Ccccc---CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 016683          213 NANIV---AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       213 ~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                      |++..   ....|+|-+++..||...|..|+...+.+..+|+.|.|+|-+|+..|+...+.+|+++..+
T Consensus       984 d~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad 1052 (2131)
T KOG4369|consen  984 DTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVAD 1052 (2131)
T ss_pred             ccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccC
Confidence            76643   2223333333334444444444443344444455555555555555555555555554443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=3.2e-24  Score=183.51  Aligned_cols=165  Identities=28%  Similarity=0.408  Sum_probs=135.5

Q ss_pred             CcCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHH
Q 016683           83 VDTQDEDGETPLLHAARQGHTETAKYLFEHG-ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIW  161 (384)
Q Consensus        83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~  161 (384)
                      +|..|.+|+|+||||+..+|+++|+.||+.| ++++.+|..|+||+++++-..-                          
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~l--------------------------  314 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKL--------------------------  314 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhh--------------------------
Confidence            5778899999999999999999999999887 6888899999999988763210                          


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHH
Q 016683          162 AAGHGQQEAVKVLLEHHANPNAE-TEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCL  239 (384)
Q Consensus       162 A~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~L  239 (384)
                       -...+.++|..|...| ++|.+ ...|.|+|++|+.+|+.++|+.|+..|+|+|++ .+|.|+|++||++||.|++++|
T Consensus       315 -k~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklL  392 (452)
T KOG0514|consen  315 -KQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLL  392 (452)
T ss_pred             -cchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHH
Confidence             0012345555555544 33332 456889999999999999999999999999988 8899999999999999999999


Q ss_pred             HHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 016683          240 LKA-GADPNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (384)
Q Consensus       240 l~~-ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (384)
                      |.. ++|+..+|.+|.|+|.+|-..||.||.-+|..+
T Consensus       393 LA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  393 LAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             hccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            965 789999999999999999999999999888754

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-24  Score=208.57  Aligned_cols=228  Identities=24%  Similarity=0.331  Sum_probs=208.4

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHH
Q 016683           51 IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI-PSNLGATALHH  129 (384)
Q Consensus        51 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~  129 (384)
                      ....+-.|+|..||..|+-|+|+.|+.+ |+++..+|..|.+||.+|+..||..+|+.|+.+.++++. .|..+.|+|.+
T Consensus       752 ~Te~n~~t~LT~acaggh~e~vellv~r-ganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSl  830 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGHREEVELLVVR-GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSL  830 (2131)
T ss_pred             ccCccccccccccccCccHHHHHHHHHh-cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEE
Confidence            3455678999999999999999999998 999999999999999999999999999999999999876 46779999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCC-CCHhHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCCCHHHHHHHcCCHHHHHH
Q 016683          130 SAGIGNIELLTYLLSKGAEVDSESDA-GTPLIWAAGHGQQEAVKVLLEHHANPNAET--EDNITPLLSAVAAGSLTCLDL  206 (384)
Q Consensus       130 A~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~--~~g~t~l~~A~~~~~~~~v~~  206 (384)
                      ||..|+.+++++|+..|++...++-. .|||.+|...|..+++..|+..|..++.+.  +.|.+||++|..+|+...++.
T Consensus       831 acsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~  910 (2131)
T KOG4369|consen  831 ACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLS  910 (2131)
T ss_pred             ecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHH
Confidence            99999999999999999987655543 499999999999999999999998888764  568999999999999999999


Q ss_pred             HHHcCCCcccc--CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 016683          207 LIQAGANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED  279 (384)
Q Consensus       207 Ll~~g~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  279 (384)
                      |++.|.|+|..  .+.+|+|-+|+..|+.+++.+||.+.+++..+-+.|.|||+-++..|..|+=++|+..+.+.
T Consensus       911 ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~  985 (2131)
T KOG4369|consen  911 LLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADT  985 (2131)
T ss_pred             HhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccccc
Confidence            99999999876  77889999999999999999999999999999999999999999999999999999887653

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=2e-23  Score=178.67  Aligned_cols=184  Identities=30%  Similarity=0.412  Sum_probs=136.6

Q ss_pred             CChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHc----
Q 016683           25 GNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQ----  100 (384)
Q Consensus        25 g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~----  100 (384)
                      .+.++|+..+..+...+..+-.-++++-|.+|+|+||||+.++++++|+.||+..-++++..|..|.||+++|+..    
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~  316 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQ  316 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcc
Confidence            5678888888887776777777778999999999999999999999999999996789999999999999999865    


Q ss_pred             -CCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHh-
Q 016683          101 -GHTETAKYLFEHGANPTIP-SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLE-  176 (384)
Q Consensus       101 -g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~-  176 (384)
                       .+.++|..|.+.| |+|.+ ...|+|+|++|+.+|+.++++.|+..|+++|..++.| |+|+.|+..||.+++++|+. 
T Consensus       317 ~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  317 PADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             hhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence             3567788887764 45543 3347777777777777777777777776666655544 66666666666666666664 


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 016683          177 HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ  209 (384)
Q Consensus       177 ~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  209 (384)
                      .++|+...|.+|-|+|.+|...|+.++.-+|..
T Consensus       396 p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  396 PSCDISLTDVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             CcccceeecCCCchhhhhHHhcCchHHHHHHHH
Confidence            355666666666666666666666665555443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-22  Score=182.90  Aligned_cols=210  Identities=29%  Similarity=0.392  Sum_probs=172.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 016683           59 ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL  138 (384)
Q Consensus        59 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  138 (384)
                      .+.-|+..|..+-++.|+.. |++++..|.+|.|+||-||.-.+.+||++|+++|++++..|..|+||||.|+..|+..+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~-ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNR-GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHhccccccHHHHHHHhcc-CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            45668889999999999987 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCC-CCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH---HHHHHHHHcCCCc
Q 016683          139 LTYLLSKGAEVDSESD-AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL---TCLDLLIQAGANA  214 (384)
Q Consensus       139 ~~~Ll~~~~~~~~~~~-~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~---~~v~~Ll~~g~~~  214 (384)
                      +++|+++|+++...+. ++.|...+...-..+++..-...         .|.+ +..+-.....   .=+...+..|.+.
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r---------~gi~-iea~R~~~e~~ml~D~~q~l~~G~~~  191 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMAR---------QGID-IEAARKAEEQTMLDDARQWLNAGAEL  191 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHH---------hccc-HHHHhhhhHHHHHHHHHHHHhccccc
Confidence            9999999998765543 44787777655555555444332         1212 2222111111   1233344578887


Q ss_pred             ccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 016683          215 NIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED  279 (384)
Q Consensus       215 ~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  279 (384)
                      +.. ..|.|+||+|+.+|+.++.++|+++|.+++.+|.+|+||||.|+..|..++.++|++++..-
T Consensus       192 d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~  257 (527)
T KOG0505|consen  192 DARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADM  257 (527)
T ss_pred             cccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhccc
Confidence            776 45999999999999999999999999999999999999999999999999999999887654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=3.6e-22  Score=162.99  Aligned_cols=146  Identities=21%  Similarity=0.217  Sum_probs=85.9

Q ss_pred             CCCCcCCCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q 016683           80 KLDVDTQDEDGETPLLHAARQGHT----ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA  155 (384)
Q Consensus        80 ~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  155 (384)
                      +++++..+.++.++||.||+.|+.    +++++|++.|++++..|..|+||||+|+..|+.+.+                
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~----------------   73 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAV----------------   73 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHH----------------
Confidence            445555666666667777766665    455556666666666666666666666665554321                


Q ss_pred             CCHhHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-CCCchHHHHHHhhCC
Q 016683          156 GTPLIWAAGHGQQEAVKVLLEHHANPNAET-EDNITPLLSAVAAGSLTCLDLLIQ-AGANANIV-AGGATPLHIAADIGS  232 (384)
Q Consensus       156 ~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~g~t~L~~A~~~~~  232 (384)
                                   +++++|++.|++++.++ ..|.||||+|+..++.+++++|+. .|++++.. ..|.||||+|+..++
T Consensus        74 -------------~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~  140 (166)
T PHA02743         74 -------------MKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRD  140 (166)
T ss_pred             -------------HHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCC
Confidence                         12344445555555554 345566666666666666666553 45555544 456666666666666


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCC
Q 016683          233 TEIIKCLLKAGADPNVTDEDGQ  254 (384)
Q Consensus       233 ~~~v~~Ll~~ga~~~~~~~~g~  254 (384)
                      .+++++|+++|++++.++..|.
T Consensus       141 ~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        141 RRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             HHHHHHHHHcCCCCCCcccCCc
Confidence            6666666666666666665543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=8.5e-22  Score=160.82  Aligned_cols=138  Identities=17%  Similarity=0.186  Sum_probs=118.5

Q ss_pred             cccCCCCcHHHHHHHcCCH----HHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHH---HHHHHHCCCCCCCCC-CC
Q 016683           51 IKDANKRGALHFAAREGKT----DVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTET---AKYLFEHGANPTIPS-NL  122 (384)
Q Consensus        51 ~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~---v~~Ll~~g~~~~~~~-~~  122 (384)
                      ..+.++.++||.||+.|+.    +++++|++. +.+++.+|..|+||||+|+..|+.++   +++|+++|++++.++ ..
T Consensus        15 ~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~   93 (166)
T PHA02743         15 EIDEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGT   93 (166)
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3566788999999999998    556667765 88999999999999999999998654   899999999999998 58


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Q 016683          123 GATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNI  189 (384)
Q Consensus       123 g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~  189 (384)
                      |.||||+|+..++.+++++|+. .|++++..+..+ ||||+|+..++.+++++|+++|++++.++..|.
T Consensus        94 g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         94 GNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            9999999999999999999995 788887766554 899999988888999999998888888776664

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=1.1e-21  Score=160.97  Aligned_cols=130  Identities=23%  Similarity=0.260  Sum_probs=97.1

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHHhC-----CCCCcCCCCCCCcHHHHHHHcCC----HHHHHHHHHCCCCCCCCC
Q 016683           50 DIKDANKRGALHFAAREGKTDVCKYLLEEL-----KLDVDTQDEDGETPLLHAARQGH----TETAKYLFEHGANPTIPS  120 (384)
Q Consensus        50 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~-----~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~  120 (384)
                      +.++..|.||||+|+..|+.++++.|+...     |++++.+|..|.||||+|+..|+    .+++++|+++|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            456778888888888888888888875432     57788888888888888888887    477888888888888877


Q ss_pred             C-CCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCC
Q 016683          121 N-LGATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA  179 (384)
Q Consensus       121 ~-~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~  179 (384)
                      . .|.||||+|+..++.+++++|++ .|++++..+..+ |||++|+..++.+++++|++.++
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            4 78888888888888888887776 466666554433 67777777666666666666543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.9e-21  Score=169.66  Aligned_cols=153  Identities=21%  Similarity=0.193  Sum_probs=95.9

Q ss_pred             CCCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCCCCCC----CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC-C-CCCC
Q 016683           85 TQDEDGET-PLLHAARQGHTETAKYLFEHGANPTIPS----NLGATALHHSAGIGNIELLTYLLSKGAEVDSE-S-DAGT  157 (384)
Q Consensus        85 ~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-~-~~~~  157 (384)
                      .+|..|.| +||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++.. + .+.|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            34445544 3455555566777777777777766653    45667777777667777777777666666653 2 2346


Q ss_pred             HhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCchHHHHHHhhCCHHHHH
Q 016683          158 PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIK  237 (384)
Q Consensus       158 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~  237 (384)
                      |||.|+..++.+++++|++.|++++..+..|.||||+|+..++..++..+...+.    ...+.+|++++   ++.++++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~n~ei~~  179 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNEI----SNFYKHPKKIL---INFDILK  179 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCcc----cccccChhhhh---ccHHHHH
Confidence            7777777777777777777777777777777777777777666666544432221    12355666654   3567777


Q ss_pred             HHHHCCC
Q 016683          238 CLLKAGA  244 (384)
Q Consensus       238 ~Ll~~ga  244 (384)
                      +|+.+++
T Consensus       180 ~Lish~v  186 (300)
T PHA02884        180 ILVSHFI  186 (300)
T ss_pred             HHHHHHH
Confidence            7777654

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=6.8e-21  Score=156.26  Aligned_cols=129  Identities=20%  Similarity=0.275  Sum_probs=95.5

Q ss_pred             cCCCCCCCcHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCCCC
Q 016683           84 DTQDEDGETPLLHAARQGHTETAKYLFE------HGANPTIPSNLGATALHHSAGIGN----IELLTYLLSKGAEVDSES  153 (384)
Q Consensus        84 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~~~~~~~~~  153 (384)
                      +.++..|.||||+|+..|+.++++.|+.      .|++++..|..|.||||+|+..|+    .+++++|++.|++++..+
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            4567889999999999999999998864      357888889999999999998888    467777777777776654


Q ss_pred             --CCCCHhHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 016683          154 --DAGTPLIWAAGHGQQEAVKVLLE-HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA  212 (384)
Q Consensus       154 --~~~~~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~  212 (384)
                        .+.||||+|+..++.+++++|++ .|++++..+..|.||||+|+..++.+++++|++.++
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence              33477777777777777777665 466666666666666666666666666666666543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=2.4e-20  Score=163.86  Aligned_cols=154  Identities=19%  Similarity=0.138  Sum_probs=131.4

Q ss_pred             hcccCCCCc-HHHHHHHcCCHHHHHHHHHhCCCCCcCCC----CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCC
Q 016683           50 DIKDANKRG-ALHFAAREGKTDVCKYLLEELKLDVDTQD----EDGETPLLHAARQGHTETAKYLFEHGANPTIP-SNLG  123 (384)
Q Consensus        50 ~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g  123 (384)
                      ..+|..|.| +||.|+..|+.+++++|++. |++++.++    ..|.||||+|+..|+.+++++|+++|++++.. +..|
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKL-GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHC-CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            345666666 56677777999999999998 99999874    58999999999999999999999999999986 4679


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 016683          124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT  202 (384)
Q Consensus       124 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  202 (384)
                      .||||+|+..++.+++++|++.|++++..+..+ ||||+|+..++.+++..+...+     .+..+.+|.+++   ++.+
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~n~e  176 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNE-----ISNFYKHPKKIL---INFD  176 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc-----ccccccChhhhh---ccHH
Confidence            999999999999999999999999999877666 9999999999998876665332     345567788765   4789


Q ss_pred             HHHHHHHcCC
Q 016683          203 CLDLLIQAGA  212 (384)
Q Consensus       203 ~v~~Ll~~g~  212 (384)
                      ++++|+.++.
T Consensus       177 i~~~Lish~v  186 (300)
T PHA02884        177 ILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHH
Confidence            9999999886

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=1.2e-20  Score=152.74  Aligned_cols=131  Identities=24%  Similarity=0.245  Sum_probs=90.5

Q ss_pred             hhcccCCCCcHHHHHHHcCCHHHHHHHHHh-CC-----CCCcCCCCCCCcHHHHHHHcCCH---HHHHHHHHCCCCCCCC
Q 016683           49 ADIKDANKRGALHFAAREGKTDVCKYLLEE-LK-----LDVDTQDEDGETPLLHAARQGHT---ETAKYLFEHGANPTIP  119 (384)
Q Consensus        49 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~-----~~~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~g~~~~~~  119 (384)
                      .+.+|.+|.||||+||..|+..  ..+... ..     ..++.+|..|.||||+|+..|+.   +++++|++.|++++..
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            3556778999999999998842  322221 01     11334577888899998888876   4678888888888888


Q ss_pred             C-CCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCC
Q 016683          120 S-NLGATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP  181 (384)
Q Consensus       120 ~-~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~  181 (384)
                      + ..|.||||+|+..|+.+++++|+. .|++++..+..+ ||||+|+..|+.+++++|+++|+++
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            7 478888888888888888777776 366666554433 6666666666666666666666554

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.84  E-value=2.6e-20  Score=143.49  Aligned_cols=114  Identities=26%  Similarity=0.348  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCc
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   92 (384)
                      +.++.++.|+..+.+..|+.|++.        .+..++.+|.+|.||||-|+.+|+++||+.|+.. |++++.+...|+|
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e--------~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~T~~GWT  132 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSE--------KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAKTNEGWT  132 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHh--------ccccccccccccccHHHHHHhcCchHHHHHHHHc-cCCcccccccCcc
Confidence            344556666666666666666665        3444566666666666666666666666666654 6666666666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 016683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (384)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  135 (384)
                      |||-||...+.+++-.||++|+|++.......||||+|+...+
T Consensus       133 PLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn  175 (228)
T KOG0512|consen  133 PLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRN  175 (228)
T ss_pred             chhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccc
Confidence            6666666666666666666666666666666666666665443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=3.7e-20  Score=149.81  Aligned_cols=133  Identities=20%  Similarity=0.191  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHH---HHHHHHHhCCCCCcCCC-C
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTD---VCKYLLEELKLDVDTQD-E   88 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~---~v~~Ll~~~~~~~~~~~-~   88 (384)
                      .+.++||.||+.|++.  +.+.....  .....+.....+|.+|.||||+|+..|+.+   ++++|++. |++++.++ .
T Consensus        16 ~g~tpLh~A~~~g~~~--~l~~~~~~--~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-gadin~~~~~   90 (154)
T PHA02736         16 EGENILHYLCRNGGVT--DLLAFKNA--ISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW-GADINGKERV   90 (154)
T ss_pred             CCCCHHHHHHHhCCHH--HHHHHHHH--hcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc-CCCccccCCC
Confidence            3678999999999843  22221110  111123345567889999999999999874   68889987 99999998 4


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 016683           89 DGETPLLHAARQGHTETAKYLFE-HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD  150 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  150 (384)
                      .|+||||+|+..|+.+++++|++ .|++++..|..|.||||+|+..|+.+++++|+++|++.+
T Consensus        91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         91 FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            89999999999999999999998 599999999999999999999999999999999998764

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.81  E-value=2e-19  Score=169.77  Aligned_cols=248  Identities=25%  Similarity=0.291  Sum_probs=178.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCC----cc---chhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhC--------C
Q 016683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKG----LS---KTVADIKDANKRGALHFAAREGKTDVCKYLLEEL--------K   80 (384)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~----~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~--------~   80 (384)
                      ++++..-..|.+--+..++..-.....+    .+   +.-.+..+...+.++..|...+.++.+..++...        .
T Consensus        54 ~~~~~~~~~g~l~~v~~l~~~~~~~~~~~~~~~~~~~~~~p~~l~~~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~  133 (782)
T KOG3676|consen   54 KGLFYNGGKGKLIPLESLVCERNKERNPLDGAFDRKKKSGPNILKRFDRDALFIADSEGALSDLDGLLKFLRKSKYRLTD  133 (782)
T ss_pred             ccccccCCCCcccchHHHHHHHhhhhcccccccccccccCcchhhhcchhhhhhccccccHHHHhccchhhhhhhhhhhh
Confidence            4555555566666666666543221111    00   1111222222336788899999998888887652        2


Q ss_pred             CCCcCCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCC----CCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 016683           81 LDVDTQDEDGETPLLHAARQ---GHTETAKYLFEHGAN----PTI-PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE  152 (384)
Q Consensus        81 ~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~----~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  152 (384)
                      .+++.+...|.|+||.|..+   ++.++++.|++.-..    +.. ....|.||||+|+.+.+.++|++|++.|++++.+
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence            56777788899999999984   456899999986432    111 2346999999999999999999999999998765


Q ss_pred             CCCC--CHhHH-HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHH
Q 016683          153 SDAG--TPLIW-AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAA  228 (384)
Q Consensus       153 ~~~~--~~l~~-A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~  228 (384)
                      -.+.  .|=.. +.   +         ...+....-..|..||..|+..++.+++++|+++|+|++.+ ++|+|.||..+
T Consensus       214 a~G~FF~~~dqk~~---r---------k~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lV  281 (782)
T KOG3676|consen  214 ACGAFFCPDDQKAS---R---------KSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLV  281 (782)
T ss_pred             hhccccCccccccc---c---------cccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHH
Confidence            4332  11000 00   0         11222222345788999999999999999999999999988 88999999999


Q ss_pred             hhCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 016683          229 DIGSTEIIKCLLKAGAD--PNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (384)
Q Consensus       229 ~~~~~~~v~~Ll~~ga~--~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (384)
                      ..-..+|..+++++|++  ...+|+.|.|||.+|+.-|+.+|.+.+++.
T Consensus       282 i~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  282 IHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            88888999999999998  888999999999999999999999998887

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=1.3e-18  Score=134.17  Aligned_cols=141  Identities=32%  Similarity=0.410  Sum_probs=114.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 016683           59 ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL  138 (384)
Q Consensus        59 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  138 (384)
                      .+-.|+..+.+..|+.||+...-.+|.+|.+|.||||-|+.+|+.+||+.|+..|++++.+...|+||||-||.=++.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            35678889999999999988666789999999999999999999999999999999999999999999999998888999


Q ss_pred             HHHHHhCCCCCCCCCCCC-CHhHHHHHcCCH-HHHHHHH-hCCCCCCCCCCCCCCHHHHHHHcC
Q 016683          139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ-EAVKVLL-EHHANPNAETEDNITPLLSAVAAG  199 (384)
Q Consensus       139 ~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~-~~~~~Ll-~~~~~~~~~~~~g~t~l~~A~~~~  199 (384)
                      +-.|+++|++++....+. ||||+|+...+. ..+.+|+ ..+..+-..+..+.||+.+|-+.+
T Consensus       146 a~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            999999998888877766 888888876654 3444444 345556666666777777776544

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=2.3e-18  Score=125.62  Aligned_cols=88  Identities=41%  Similarity=0.630  Sum_probs=80.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 016683           60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELL  139 (384)
Q Consensus        60 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  139 (384)
                      ||+||..|+.+++++|++. +.+++.    |+||||+|+.+|+.+++++|+++|++++..|..|.||||+|+..|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            7899999999999999996 877776    88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCC
Q 016683          140 TYLLSKGAEVDSE  152 (384)
Q Consensus       140 ~~Ll~~~~~~~~~  152 (384)
                      ++|+++|++++.+
T Consensus        76 ~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   76 KLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHTTT-TTSS
T ss_pred             HHHHHcCCCCCCc
Confidence            9999999988764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.78  E-value=5e-18  Score=160.38  Aligned_cols=241  Identities=24%  Similarity=0.264  Sum_probs=172.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCcCC----CC
Q 016683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAARE---GKTDVCKYLLEELKLDVDTQ----DE   88 (384)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~----~~   88 (384)
                      +.++.|...++++.+..++...+......-..-.+.+...|.|+||.|.-+   ++.++++.|++..+.-+|..    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            788999999999999988877543211111122355677899999999984   56689999999877555543    24


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCCHhHHHHHcCC
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAGHGQ  167 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~l~~A~~~~~  167 (384)
                      .|.||||+|+.+.+.++|++|++.|||++.+-.- .  +..+-..+   -.+    +..+..- --.+..||.+|+..++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G-~--FF~~~dqk---~~r----k~T~Y~G~~YfGEyPLSfAAC~nq  252 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACG-A--FFCPDDQK---ASR----KSTNYTGYFYFGEYPLSFAACTNQ  252 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhc-c--ccCccccc---ccc----cccCCcceeeeccCchHHHHHcCC
Confidence            6999999999999999999999999998754210 0  00000000   000    1111110 1123489999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--cccc-CCCchHHHHHHhhCCHHHHHHHHHC-C
Q 016683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN--ANIV-AGGATPLHIAADIGSTEIIKCLLKA-G  243 (384)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~--~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~-g  243 (384)
                      .+++++|+++|+|++.+|..|+|.||..+..-..++..+++++|++  ..+. ..|-|||.+|++.|..+|.+.+++. .
T Consensus       253 ~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k  332 (782)
T KOG3676|consen  253 PEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRK  332 (782)
T ss_pred             HHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhc
Confidence            9999999999999999999999999999999888999999999988  4444 6789999999999999999999986 1


Q ss_pred             -------------CCCCCCCC--CCCcHHHHHHHcCCH
Q 016683          244 -------------ADPNVTDE--DGQKPIQVAAARGNR  266 (384)
Q Consensus       244 -------------a~~~~~~~--~g~t~l~~A~~~~~~  266 (384)
                                   -+.+..|.  +-.++|.+.+.....
T Consensus       333 ~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg~~~  370 (782)
T KOG3676|consen  333 FTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYGIKN  370 (782)
T ss_pred             ccceeecccccccccchhcccccchhhhhhhhhcCCcH
Confidence                         12233332  456777777766443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=5.4e-19  Score=147.21  Aligned_cols=156  Identities=25%  Similarity=0.330  Sum_probs=126.1

Q ss_pred             HHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHH
Q 016683           18 FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHA   97 (384)
Q Consensus        18 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A   97 (384)
                      ++.=|+.||.-.|+..++.        -+...+.-|..|.+|||.||+.|+..+++.|+.+ |+.+|..|....||||+|
T Consensus         4 if~wcregna~qvrlwld~--------tehdln~gddhgfsplhwaakegh~aivemll~r-garvn~tnmgddtplhla   74 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLDD--------TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNSTNMGDDTPLHLA   74 (448)
T ss_pred             hhhhhhcCCeEEEEEEecC--------cccccccccccCcchhhhhhhcccHHHHHHHHhc-ccccccccCCCCcchhhh
Confidence            3444555555444444432        2334567788999999999999999999999998 999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHh
Q 016683           98 ARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLE  176 (384)
Q Consensus        98 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~  176 (384)
                      +..||-++|+.|++..+|+|..+..|.||||+||.-|.-.+.+-|+..|+.++..+..+ ||+..|--.-...+.+.--+
T Consensus        75 aahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek  154 (448)
T KOG0195|consen   75 AAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEK  154 (448)
T ss_pred             hhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888776 99987633222223333334


Q ss_pred             CCCCCC
Q 016683          177 HHANPN  182 (384)
Q Consensus       177 ~~~~~~  182 (384)
                      .|..++
T Consensus       155 ~gq~~n  160 (448)
T KOG0195|consen  155 HGQSPN  160 (448)
T ss_pred             hCCCCC
Confidence            565554

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=7.4e-18  Score=122.91  Aligned_cols=88  Identities=42%  Similarity=0.544  Sum_probs=48.5

Q ss_pred             hHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHH
Q 016683          159 LIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIK  237 (384)
Q Consensus       159 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~  237 (384)
                      ||+|+..|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|++.|++++.. ..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            4555555555555555555554443    455555555555555555555555555544 45556666666666666666


Q ss_pred             HHHHCCCCCCCCC
Q 016683          238 CLLKAGADPNVTD  250 (384)
Q Consensus       238 ~Ll~~ga~~~~~~  250 (384)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            6666665555543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=6e-17  Score=125.96  Aligned_cols=121  Identities=44%  Similarity=0.672  Sum_probs=79.5

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 016683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (384)
Q Consensus        53 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  132 (384)
                      +..|.||||+|+..|+.+++++|++. +.+.+..+..|.||||.|+..++.+++++|++.|++++..+..|.||+|+|+.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            45577777777777777777777765 66666666777777777777777777777777776666666666777777777


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHH
Q 016683          133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL  174 (384)
Q Consensus       133 ~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~L  174 (384)
                      .++.+++++|++++.+.+..+..+ ||++.|...++.+++++|
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            666666666666664444333322 555555555555555554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.74  E-value=9.1e-17  Score=124.92  Aligned_cols=123  Identities=45%  Similarity=0.654  Sum_probs=98.2

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHH
Q 016683           85 TQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAA  163 (384)
Q Consensus        85 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~  163 (384)
                      ..|..|.||||+|+..|+.+++++|++.+.+.+..+..|.||+|.|+..++.+++++|++.+..++..+..+ +|+|+|+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            345778899999999999999999999988888888888999999998888888888888886665544333 7888888


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 016683          164 GHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL  207 (384)
Q Consensus       164 ~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  207 (384)
                      ..++.+++++|++++.+.+..+..|.||++.|...++.+++++|
T Consensus        82 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            88888888888887777777777777777777777777777665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.74  E-value=3.8e-18  Score=142.18  Aligned_cols=153  Identities=28%  Similarity=0.393  Sum_probs=129.4

Q ss_pred             HHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 016683           64 AREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL  143 (384)
Q Consensus        64 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  143 (384)
                      |+.|+.-.|+..++...-+.|.-|..|.+|||.||+.|+..+|+.|+..|+.+|..+....||||+|+.+|+.+++..|+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence            45555555666666667888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 016683          144 SKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI  216 (384)
Q Consensus       144 ~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  216 (384)
                      +..+++|..++.+ ||||+||..|...+.+-|+..|+-++.-++.|.|||..|--.-...+.+..-++|-+++.
T Consensus        88 ~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen   88 SRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             HHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence            9999999888776 999999999999999999999999999999999999877543333333444456666653

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.65  E-value=9.6e-16  Score=105.63  Aligned_cols=103  Identities=26%  Similarity=0.433  Sum_probs=83.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHH
Q 016683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL   95 (384)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   95 (384)
                      ..+.+++++|.++.|++.+..    |-++    .  ....|++|||+|+-+|+++++++|+.. |++++.+|+.|-|||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~----g~nV----n--~~~ggR~plhyAAD~GQl~ilefli~i-GA~i~~kDKygITPLL   72 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNE----GLNV----N--EIYGGRTPLHYAADYGQLSILEFLISI-GANIQDKDKYGITPLL   72 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHc----cccH----H--HHhCCcccchHhhhcchHHHHHHHHHh-ccccCCccccCCcHHH
Confidence            357788899999999988876    2222    1  223688999999999999999999987 9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 016683           96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHH  129 (384)
Q Consensus        96 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  129 (384)
                      .|+..||.++|++||++|++-...-.+|.+.+..
T Consensus        73 sAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   73 SAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHhhHHHHHHHHHcCcccceeCCCchhHHhh
Confidence            9999999999999999998888777777766553

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.61  E-value=2.7e-15  Score=103.44  Aligned_cols=103  Identities=29%  Similarity=0.386  Sum_probs=91.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 016683           59 ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL  138 (384)
Q Consensus        59 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  138 (384)
                      -+..++++|.++-|+..+.. |.++|..- .|++|||+|+-.|+.+++++|+..|++++..|+.|-|||-.|+..|+.++
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~-g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNE-GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHc-cccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            46678899999999998887 88888764 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCHhHHHH
Q 016683          139 LTYLLSKGAEVDSESDAGTPLIWAA  163 (384)
Q Consensus       139 ~~~Ll~~~~~~~~~~~~~~~l~~A~  163 (384)
                      |++|+++|++.......++.+.-|.
T Consensus        83 VklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHcCcccceeCCCchhHHhhc
Confidence            9999999999877777776655554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.58  E-value=5.1e-14  Score=121.48  Aligned_cols=123  Identities=40%  Similarity=0.543  Sum_probs=112.0

Q ss_pred             CCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCC---Ccccc-CCCchHH
Q 016683          154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS-----LTCLDLLIQAGA---NANIV-AGGATPL  224 (384)
Q Consensus       154 ~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~-----~~~v~~Ll~~g~---~~~~~-~~g~t~L  224 (384)
                      ...++++.++..+...++++++..+++++..+..|.||+|+|+..++     .+++++|++.|+   ..+.. ..|+|||
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl  151 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL  151 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchh
Confidence            34588999999999999999999999999999999999999999999     999999999999   44443 7899999


Q ss_pred             HHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 016683          225 HIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (384)
Q Consensus       225 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (384)
                      |+|+..|+.++++.|++.|++++..+..|.|+++.|+..++.++++.++..+
T Consensus       152 ~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         152 HWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999998764

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.56  E-value=3.7e-13  Score=116.11  Aligned_cols=132  Identities=36%  Similarity=0.533  Sum_probs=88.7

Q ss_pred             CCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHhCCC---CCCC
Q 016683           80 KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN-----IELLTYLLSKGA---EVDS  151 (384)
Q Consensus        80 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~~~---~~~~  151 (384)
                      .......+..+.++++.++..+..+++++++..|++++..+..|.||||+|+..++     .++++.|++.|+   ..+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  142 (235)
T COG0666          63 DRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL  142 (235)
T ss_pred             ccccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc
Confidence            34444556678889999999999999999999999999999999999999998888     677777777766   2333


Q ss_pred             CCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 016683          152 ESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG  211 (384)
Q Consensus       152 ~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g  211 (384)
                      .+..+ ||||+|+..|+.+++++|++.|++++..+..|.|+++.|+..++.++++.+++.+
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            23222 5555555555555555555555555555555555555555555555555555543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.55  E-value=3.4e-14  Score=118.69  Aligned_cols=120  Identities=31%  Similarity=0.376  Sum_probs=111.7

Q ss_pred             CCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCchHHHHHHhhCCH
Q 016683          156 GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV--AGGATPLHIAADIGST  233 (384)
Q Consensus       156 ~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~~~~~~  233 (384)
                      ..||.-++..|+.+-...|++..-++|..|..|.++|..|+..|+.+++++|++.|+|+|..  ..+.||||+|+..|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            37899999999999999999887778999999999999999999999999999999999987  6689999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 016683          234 EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (384)
Q Consensus       234 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (384)
                      ++.++|++.|+.+...|.-|+|+-.+|+.-|+.++|..+-.+
T Consensus        93 dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             hHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999999999999999999999999999877544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.55  E-value=6.6e-14  Score=117.00  Aligned_cols=125  Identities=22%  Similarity=0.299  Sum_probs=112.2

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCC-CCC
Q 016683           11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ-DED   89 (384)
Q Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~   89 (384)
                      ...--++|++++-.||.+.+..|++.+         .-++.+|..|.|+|..|+..|++++|+.|++. |+|+|.. +..
T Consensus         9 ld~~~~~Lle~i~Kndt~~a~~LLs~v---------r~vn~~D~sGMs~LahAaykGnl~~v~lll~~-gaDvN~~qhg~   78 (396)
T KOG1710|consen    9 LDAPKSPLLEAIDKNDTEAALALLSTV---------RQVNQRDPSGMSVLAHAAYKGNLTLVELLLEL-GADVNDKQHGT   78 (396)
T ss_pred             ccchhhHHHHHHccCcHHHHHHHHHHh---------hhhhccCCCcccHHHHHHhcCcHHHHHHHHHh-CCCcCcccccc
Confidence            344567899999999999999999863         22478899999999999999999999999997 9999975 567


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 016683           90 GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK  145 (384)
Q Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  145 (384)
                      +.||||+|+.+|+.++.++|++.|+.+...|.-|+|+-.+|+.-|+.++|..+-.+
T Consensus        79 ~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   79 LYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            89999999999999999999999999999999999999999999999999876543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=1.8e-14  Score=93.85  Aligned_cols=54  Identities=52%  Similarity=0.783  Sum_probs=45.6

Q ss_pred             CchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhc
Q 016683          220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF  273 (384)
Q Consensus       220 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  273 (384)
                      |+||||+|+..|+.+++++|++.|++++.+|.+|.||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999985

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.51  E-value=4.2e-14  Score=92.07  Aligned_cols=54  Identities=46%  Similarity=0.778  Sum_probs=33.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 016683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLF  110 (384)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  110 (384)
                      |.||||.||..|+.+++++|++. |.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            55677777777777777777766 6666666666777777777777777776664

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.48  E-value=5e-14  Score=92.18  Aligned_cols=54  Identities=48%  Similarity=0.807  Sum_probs=31.5

Q ss_pred             HHHcC-CCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 016683          207 LIQAG-ANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA  260 (384)
Q Consensus       207 Ll~~g-~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  260 (384)
                      |+++| .+++.. ..|.||||+||..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            46667 667766 7789999999999999999999999999999999999999987

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=7.5e-14  Score=91.34  Aligned_cols=56  Identities=45%  Similarity=0.666  Sum_probs=31.5

Q ss_pred             HHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 016683           75 LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS  130 (384)
Q Consensus        75 Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  130 (384)
                      |++..+.+++..|..|+||||+||.+|+.++|++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45553488888999999999999999999999999999999999999999999886

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=1.9e-13  Score=123.06  Aligned_cols=117  Identities=26%  Similarity=0.408  Sum_probs=103.9

Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHH
Q 016683          160 IWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKC  238 (384)
Q Consensus       160 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~  238 (384)
                      .-|+..|.+++|+..+..-.|+...+..|.|+||.|+..||.+||++|++.|+++|.. ++||||||+|+..++..+++.
T Consensus       555 LDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckq  634 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQ  634 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHH
Confidence            3488899999999999999999999999999999999999999999999999999988 899999999999999999999


Q ss_pred             HHHCCCCCCCCC-CCCCcHHHHHH--HcCCHHHHHhhcCCC
Q 016683          239 LLKAGADPNVTD-EDGQKPIQVAA--ARGNREAVEILFPLT  276 (384)
Q Consensus       239 Ll~~ga~~~~~~-~~g~t~l~~A~--~~~~~~~v~~Ll~~~  276 (384)
                      |++.|+.+.+.. .++.||.+-+-  +.|+..|.++|....
T Consensus       635 LVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vq  675 (752)
T KOG0515|consen  635 LVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQ  675 (752)
T ss_pred             HHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHHH
Confidence            999999877554 57889887664  357788999987543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.46  E-value=4.8e-13  Score=132.20  Aligned_cols=95  Identities=32%  Similarity=0.415  Sum_probs=88.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 016683           59 ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL  138 (384)
Q Consensus        59 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  138 (384)
                      .|+.|+..|+.+.+++|++. |+++|.+|..|+||||+|+.+|+.+++++|+++|++++..|..|.||||+|+..|+.++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            58899999999999999997 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-------CCCCCCCCC
Q 016683          139 LTYLLSK-------GAEVDSESD  154 (384)
Q Consensus       139 ~~~Ll~~-------~~~~~~~~~  154 (384)
                      +++|+++       |++.+....
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~  186 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSF  186 (664)
T ss_pred             HHHHHhCCCcccccCCCCCcccc
Confidence            9999998       666655444

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=5.8e-13  Score=131.64  Aligned_cols=104  Identities=29%  Similarity=0.464  Sum_probs=78.3

Q ss_pred             HhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHH
Q 016683          158 PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEII  236 (384)
Q Consensus       158 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v  236 (384)
                      .|+.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            466777777777777777777777777777778888887777888888888777777766 6677888888888888888


Q ss_pred             HHHHHC-------CCCCCCCCCCCCcHHHHHH
Q 016683          237 KCLLKA-------GADPNVTDEDGQKPIQVAA  261 (384)
Q Consensus       237 ~~Ll~~-------ga~~~~~~~~g~t~l~~A~  261 (384)
                      ++|+++       |++++..+..|.+|+..+.
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            888777       7777777776766655443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=6.2e-13  Score=119.81  Aligned_cols=116  Identities=31%  Similarity=0.372  Sum_probs=98.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 016683           60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELL  139 (384)
Q Consensus        60 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  139 (384)
                      |.-|+..|.+++|+..+.+ --|+...|..|-|+||.|+..||.+||++|++.|+++|..|.+|+||||+|+..++..++
T Consensus       554 LLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            4568889999999999987 678888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCC--CCCCCHhHHH--HHcCCHHHHHHHHh
Q 016683          140 TYLLSKGAEVDSE--SDAGTPLIWA--AGHGQQEAVKVLLE  176 (384)
Q Consensus       140 ~~Ll~~~~~~~~~--~~~~~~l~~A--~~~~~~~~~~~Ll~  176 (384)
                      +.|++.|+-+-..  .+..|+...+  ...|..+|.++|..
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999776432  2333666554  34567778888864

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.08  E-value=1.7e-09  Score=97.18  Aligned_cols=93  Identities=35%  Similarity=0.504  Sum_probs=84.3

Q ss_pred             CCCCCCCCC------HHHHHHHcCCHHHHHHHHHcCCCcccc--CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCC
Q 016683          182 NAETEDNIT------PLLSAVAAGSLTCLDLLIQAGANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDG  253 (384)
Q Consensus       182 ~~~~~~g~t------~l~~A~~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  253 (384)
                      ..+|.+|.+      -||..++.|+.+..-.|+..|+++|..  ..|.||||+|++.|+..-+++|+=+|||++..|..|
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            345555554      489999999999999999999999987  789999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHhhcC
Q 016683          254 QKPIQVAAARGNREAVEILFP  274 (384)
Q Consensus       254 ~t~l~~A~~~~~~~~v~~Ll~  274 (384)
                      .||+.+|-..||-++.+-|++
T Consensus       201 mtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHH
Confidence            999999999999999887764

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.04  E-value=6.5e-10  Score=101.41  Aligned_cols=130  Identities=27%  Similarity=0.383  Sum_probs=108.1

Q ss_pred             hhhhhhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCcC
Q 016683            7 HALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKL-DVDT   85 (384)
Q Consensus         7 ~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~   85 (384)
                      ++.......+.++.|+..+|+=-++.....    |.++     -.++.+..|.||+|++.|+-++|+|++++.+. .++.
T Consensus       859 ~~~~appiseeil~av~~~D~~klqE~h~~----gg~l-----l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~  929 (1004)
T KOG0782|consen  859 NSRRAPPISEEILRAVLSSDLMKLQETHLN----GGSL-----LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDM  929 (1004)
T ss_pred             ccCCCCCccHHHHHHHHhccHHHHHHHHhc----CCce-----EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHH
Confidence            333333355669999999998666655543    3333     46788999999999999999999999998433 2567


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 016683           86 QDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK  145 (384)
Q Consensus        86 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  145 (384)
                      .+..|.|+||-|+..++-.+.++|++.|+.+...|..|.||-..|-+.|+.++..+|-..
T Consensus       930 ~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  930 ADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            789999999999999999999999999999999999999999999999999999998654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.97  E-value=1.1e-09  Score=104.23  Aligned_cols=107  Identities=29%  Similarity=0.388  Sum_probs=89.7

Q ss_pred             HHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCC-CCCcHHHH
Q 016683           18 FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDE-DGETPLLH   96 (384)
Q Consensus        18 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~   96 (384)
                      ...+...|..+.++..+..       --....+++|..|+|+||+|+..|...+++||+.+ |++++.+|. .|.||||-
T Consensus        21 ~~~~~tKs~~Nqlk~F~~k-------~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHR   92 (1267)
T KOG0783|consen   21 QDDSKTKSEPNQLKGFSEK-------SCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHR   92 (1267)
T ss_pred             hhhhhhcCChhHHHHHHHH-------hhhhhhhHHHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhH
Confidence            3344444555455554443       12334688999999999999999999999999998 999999985 69999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 016683           97 AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (384)
Q Consensus        97 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  132 (384)
                      |+..|+++++-.||++|..+...|.+|.+||.+-++
T Consensus        93 aiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   93 AIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             hhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence            999999999999999999999999999999998776

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.92  E-value=1.4e-09  Score=97.33  Aligned_cols=130  Identities=21%  Similarity=0.287  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCc
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   92 (384)
                      ..-++|..-.-..|.+.+..--..-.+    +... ...++.++.-.+++|++.|++..++.+.-. |.|++.+|.+.+|
T Consensus       468 ~Fc~~Lvs~fNFHNYD~L~h~~~~K~D----PRR~-~~~~~~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RT  541 (622)
T KOG0506|consen  468 AFCRQLVSKFNFHNYDSLRHPDNRKID----PRRE-GGPRENDTVINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRT  541 (622)
T ss_pred             HHHHHHHHHhcccCchhhcccccccCC----cccc-cCcccccchhhhhhhhhcCCHHHHHHHHHh-cccccccccccch
Confidence            334455555555666666555442111    1111 123455677788899999999988877766 9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 016683           93 PLLHAARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE  148 (384)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  148 (384)
                      +||+|+..|+.+++++|++. +.+++..|.+|+|||.-|...++.+++++|-+....
T Consensus       542 aLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  542 ALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQYP  598 (622)
T ss_pred             hheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhcc
Confidence            99999999999999999874 688888999999999999999999999988876543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.91  E-value=2e-09  Score=59.97  Aligned_cols=30  Identities=57%  Similarity=0.851  Sum_probs=24.3

Q ss_pred             CCchHHHHHHhhCCHHHHHHHHHCCCCCCC
Q 016683          219 GGATPLHIAADIGSTEIIKCLLKAGADPNV  248 (384)
Q Consensus       219 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  248 (384)
                      +|+||||+||..|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            378888888888888888888888888763

>PF13606 Ank_3: Ankyrin repeat

Probab=98.87  E-value=3.7e-09  Score=58.87  Aligned_cols=28  Identities=54%  Similarity=0.832  Sum_probs=17.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q 016683           90 GETPLLHAARQGHTETAKYLFEHGANPT  117 (384)
Q Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  117 (384)
                      |+||||+||..|+.++|++|+++|+|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5666666666666666666666666554

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.84  E-value=1.7e-09  Score=102.94  Aligned_cols=85  Identities=26%  Similarity=0.324  Sum_probs=79.0

Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 016683          181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ  258 (384)
Q Consensus       181 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  258 (384)
                      .|..|..|+|+||+++..+..++++||+++|+++...  ..|+||||-|+.+|+++++-.||.+|+...++|++|.+||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            5678899999999999999999999999999999887  78999999999999999999999999999999999999999


Q ss_pred             HHHHcCC
Q 016683          259 VAAARGN  265 (384)
Q Consensus       259 ~A~~~~~  265 (384)
                      .-++-..
T Consensus       125 ~~~r~~~  131 (1267)
T KOG0783|consen  125 FLSRVLS  131 (1267)
T ss_pred             HHhhccc
Confidence            8876433

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.83  E-value=6.3e-09  Score=59.74  Aligned_cols=33  Identities=55%  Similarity=0.787  Sum_probs=28.9

Q ss_pred             CCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCC
Q 016683          219 GGATPLHIAADIGSTEIIKCLLKAGADPNVTDE  251 (384)
Q Consensus       219 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  251 (384)
                      +|+||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            388999999999999999999999999988763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.81  E-value=6e-09  Score=93.38  Aligned_cols=93  Identities=27%  Similarity=0.344  Sum_probs=83.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCC-CHhHHHHH
Q 016683           87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK-GAEVDSESDAG-TPLIWAAG  164 (384)
Q Consensus        87 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~-~~l~~A~~  164 (384)
                      ..++...+++|+..|....++.+.-.|.|++..|.+.+|+||.|+..|+++++++|++. +.+++..+..+ |||.-|..
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            45667789999999999999999999999999999999999999999999999999986 67777776655 99999999


Q ss_pred             cCCHHHHHHHHhCCC
Q 016683          165 HGQQEAVKVLLEHHA  179 (384)
Q Consensus       165 ~~~~~~~~~Ll~~~~  179 (384)
                      .+|.+++++|-+...
T Consensus       583 F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQY  597 (622)
T ss_pred             cCcHHHHHHHHHHhc
Confidence            999999999988654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.80  E-value=3e-08  Score=89.38  Aligned_cols=93  Identities=30%  Similarity=0.393  Sum_probs=82.8

Q ss_pred             cccCCCCcH------HHHHHHcCCHHHHHHHHHhCCCCCcCCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q 016683           51 IKDANKRGA------LHFAAREGKTDVCKYLLEELKLDVDTQD-EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG  123 (384)
Q Consensus        51 ~~d~~g~t~------L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g  123 (384)
                      .+|.+|.+.      ||..++.|+++..-.||.. |+++|..+ ..|.||||+|++.|+..-+++|+=+|+|+...|..|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            456666554      9999999999988888876 99999986 469999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHh
Q 016683          124 ATALHHSAGIGNIELLTYLLS  144 (384)
Q Consensus       124 ~t~L~~A~~~~~~~~~~~Ll~  144 (384)
                      .||+.+|-..|+-++.+.|++
T Consensus       201 mtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHH
Confidence            999999999999888887776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.78  E-value=2.6e-08  Score=91.22  Aligned_cols=116  Identities=20%  Similarity=0.228  Sum_probs=102.2

Q ss_pred             hHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--c-CCCchHHHHHHhhCCHHH
Q 016683          159 LIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI--V-AGGATPLHIAADIGSTEI  235 (384)
Q Consensus       159 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~--~-~~g~t~L~~A~~~~~~~~  235 (384)
                      +..|+..+++--++....+|.+.-.++.+..+.||+|++.|+-++|+|++++|..--.  . .+|.|+||.|+-.++.-+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            4556666666666667778888888899999999999999999999999999976332  2 789999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcC
Q 016683          236 IKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFP  274 (384)
Q Consensus       236 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  274 (384)
                      +++|++.|+..-.+|..|.||-.-|-+.|+.++.-+|-.
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            999999999999999999999999999999999998864

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.77  E-value=1.3e-08  Score=58.39  Aligned_cols=32  Identities=44%  Similarity=0.721  Sum_probs=20.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPS  120 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  120 (384)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            35666666666666666666666666666554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.70  E-value=9.9e-08  Score=92.06  Aligned_cols=129  Identities=25%  Similarity=0.264  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCC
Q 016683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE   91 (384)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   91 (384)
                      ......++.|+.+||.-.|+.+++...    . .....++.|.-|+++|+.|+.+.+.+++++|++. +...       .
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~----~-~~lninc~d~lGr~al~iai~nenle~~eLLl~~-~~~~-------g   89 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKA----V-SKLNINCRDPLGRLALHIAIDNENLELQELLLDT-SSEE-------G   89 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhcc----c-cccchhccChHhhhceecccccccHHHHHHHhcC-cccc-------c
Confidence            345567899999999999999998732    2 4455788999999999999999999999999986 4333       3


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCC----------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 016683           92 TPLLHAARQGHTETAKYLFEHGANP----------TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES  153 (384)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  153 (384)
                      .+|.+|+..|..++|+.++.+-...          ...-.-+-|||.+||..++.+|++.|+++|+.+..+.
T Consensus        90 dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   90 DALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            5899999999999999999874332          1122346789999999999999999999988765443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.69  E-value=5.8e-08  Score=89.17  Aligned_cols=59  Identities=34%  Similarity=0.395  Sum_probs=30.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA  147 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  147 (384)
                      +|.|+||+||+.|++.+.++|+-+|+|+..+|..|+|+|.||-+.|.-+++..|+++|+
T Consensus       660 ~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  660 DGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             CCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCC
Confidence            34455555555555555555555555555555555555555555555555555555544

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.66  E-value=1.2e-07  Score=91.46  Aligned_cols=124  Identities=20%  Similarity=0.236  Sum_probs=101.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCC---CCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 016683           56 KRGALHFAAREGKTDVCKYLLEELK---LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (384)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~Ll~~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  132 (384)
                      +.--...|+.+|+...|+..++...   .++|..|.-|.++|+.|+.+.|.+++++|++++...       ..+|.+|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHH
Confidence            3345668999999999999998744   478889999999999999999999999999986554       468999999


Q ss_pred             cCCHHHHHHHHhCCCCCC-----------CCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 016683          133 IGNIELLTYLLSKGAEVD-----------SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETE  186 (384)
Q Consensus       133 ~~~~~~~~~Ll~~~~~~~-----------~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  186 (384)
                      .|..++++.++.+.....           .-..+-||+.+||..++.+|++.|+++|+.+.....
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~  162 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHD  162 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcc
Confidence            999999999998754331           111223999999999999999999999988765543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.59  E-value=1.1e-07  Score=87.34  Aligned_cols=87  Identities=30%  Similarity=0.450  Sum_probs=78.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccc-----CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 016683          191 PLLSAVAAGSLTCLDLLIQAGANANIV-----AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN  265 (384)
Q Consensus       191 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~-----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  265 (384)
                      -|.-|+...++..+-+|+.+|......     .+|+|+||+||..|++.+.++|+=+|+|+-.+|..|+|||.||-+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            466788888899999999999654432     557999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCC
Q 016683          266 REAVEILFPLTS  277 (384)
Q Consensus       266 ~~~v~~Ll~~~~  277 (384)
                      .+++..|+.++-
T Consensus       707 qec~d~llq~gc  718 (749)
T KOG0705|consen  707 QECIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHHHcCC
Confidence            999999998864

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.57  E-value=1.9e-07  Score=85.28  Aligned_cols=88  Identities=35%  Similarity=0.544  Sum_probs=75.2

Q ss_pred             cHHHHHHHcCCHHHHHH-HHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q 016683           58 GALHFAAREGKTDVCKY-LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI  136 (384)
Q Consensus        58 t~L~~A~~~g~~~~v~~-Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  136 (384)
                      -|+|.++.....+-+.. |..+....++..|..|+||||+|+.-|+.+.++.|+.+|+++..+|..|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            45999988877765444 33334667889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 016683          137 ELLTYLLSK  145 (384)
Q Consensus       137 ~~~~~Ll~~  145 (384)
                      .++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            888877765

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.46  E-value=4.6e-07  Score=82.88  Aligned_cols=89  Identities=26%  Similarity=0.365  Sum_probs=77.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHH
Q 016683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL   95 (384)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   95 (384)
                      .++|.++-..+.+-+.+.+..-       ....++.+|..|.||||+|+.-|+.+.++.|+.. ++++..+|..|++|||
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~-------~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a-~Adv~~kN~~gWs~L~   93 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAK-------VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA-GADVSIKNNEGWSPLH   93 (560)
T ss_pred             cccchhhhccchhhHHHHHhhh-------hhceeccccCCCCccHHHHHHhcCHHHHHHHHhc-CCCccccccccccHHH
Confidence            6799999999998888766541       2234467889999999999999999999999998 9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHC
Q 016683           96 HAARQGHTETAKYLFEH  112 (384)
Q Consensus        96 ~A~~~g~~~~v~~Ll~~  112 (384)
                      -|+..|+.+++.-++.+
T Consensus        94 EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   94 EAVSTGNEQIITEVLRH  110 (560)
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            99999999999888875

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.41  E-value=1.4e-06  Score=76.39  Aligned_cols=84  Identities=29%  Similarity=0.332  Sum_probs=70.5

Q ss_pred             cchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q 016683           45 SKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGA  124 (384)
Q Consensus        45 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~  124 (384)
                      .+.+...++.  +.-|..||+.|+.+.|++|++. |.++|.+|....+||.+|+..||.++|++||++|+-...-..+|.
T Consensus        27 ~~s~~~~~~~--f~elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~  103 (516)
T KOG0511|consen   27 KPSVPLKKVP--FGELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGD  103 (516)
T ss_pred             CcccccccCc--hHHHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcc
Confidence            3444444433  4458999999999999999995 999999999999999999999999999999999998877777788


Q ss_pred             cHHHHHH
Q 016683          125 TALHHSA  131 (384)
Q Consensus       125 t~L~~A~  131 (384)
                      .+++-|.
T Consensus       104 RC~YgaL  110 (516)
T KOG0511|consen  104 RCHYGAL  110 (516)
T ss_pred             hhhhhhh
Confidence            7766554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.25  E-value=9.9e-07  Score=87.55  Aligned_cols=77  Identities=27%  Similarity=0.390  Sum_probs=39.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHc
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGH  165 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~  165 (384)
                      .|.|+||.|+..|..-++++|+++|++++..|..|++|+|.+...|+...+..|+++|++.+..+..+ +|+.+|...
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            34455555555555555555555555555555555555555555555555555555555554444333 555555443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.18  E-value=5.1e-06  Score=66.12  Aligned_cols=69  Identities=23%  Similarity=0.309  Sum_probs=46.7

Q ss_pred             CCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 016683           80 KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG-ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE  148 (384)
Q Consensus        80 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  148 (384)
                      +.++|.+|..|+||++.|+..|+.+.+.||+.+| +.+...|..|.+++.+|-..|..+.+..|.+.-.+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            3456666777777777777777777777777776 66666677777777777777777776666665433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.15  E-value=2.1e-06  Score=85.33  Aligned_cols=88  Identities=40%  Similarity=0.548  Sum_probs=80.0

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 016683          186 EDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG  264 (384)
Q Consensus       186 ~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  264 (384)
                      ..|.|+||.|+..+...++++|+++|++++.. ..|+||+|.+...|+...+..|++.|+++++.+.+|.+|+++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            45789999999999999999999999999988 88999999999999999999999999999999999999999998877


Q ss_pred             CHHHHHhhc
Q 016683          265 NREAVEILF  273 (384)
Q Consensus       265 ~~~~v~~Ll  273 (384)
                      +.+++-++.
T Consensus       734 ~~d~~~l~~  742 (785)
T KOG0521|consen  734 NADIVLLLR  742 (785)
T ss_pred             cccHHHHHh
Confidence            766665554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.09  E-value=7.5e-06  Score=65.18  Aligned_cols=70  Identities=29%  Similarity=0.327  Sum_probs=63.2

Q ss_pred             hhcccCCCCcHHHHHHHcCCHHHHHHHHHhCC-CCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 016683           49 ADIKDANKRGALHFAAREGKTDVCKYLLEELK-LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP  119 (384)
Q Consensus        49 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  119 (384)
                      .+.+|..|+|++++|+..|+.+.+.||+.+ | +.+...|..|.+++.+|-+.|..++|+.|.+...+-...
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgr-g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p   75 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGR-GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHP   75 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhcc-CcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCc
Confidence            467899999999999999999999999998 7 899999999999999999999999999999875444433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.04  E-value=9.5e-06  Score=80.43  Aligned_cols=128  Identities=21%  Similarity=0.131  Sum_probs=94.9

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 016683           50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHH  129 (384)
Q Consensus        50 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  129 (384)
                      ......|.+.+|+++..+..-.++.+++..+......|.+|...+|+++..|..-.+....-.|..++.+|..|+||||+
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            34455788999999999999888888885455566677778888888555444333333445678889999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCC------CC-CCCCHhHHHHHcCCHHHHHHHHhC
Q 016683          130 SAGIGNIELLTYLLSKGAEVDS------ES-DAGTPLIWAAGHGQQEAVKVLLEH  177 (384)
Q Consensus       130 A~~~~~~~~~~~Ll~~~~~~~~------~~-~~~~~l~~A~~~~~~~~~~~Ll~~  177 (384)
                      |+..|+..++..|++-|++...      .. .+.|+-..|-..|+..+.-+|-+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999977765432      11 233788888888888888777765

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.02  E-value=1.3e-05  Score=72.95  Aligned_cols=63  Identities=27%  Similarity=0.376  Sum_probs=55.7

Q ss_pred             CCHHHHHHHHHcCCCcccc-------CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 016683          199 GSLTCLDLLIQAGANANIV-------AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA  261 (384)
Q Consensus       199 ~~~~~v~~Ll~~g~~~~~~-------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  261 (384)
                      .-...+++|.+++.+.|..       .-..|+||+|+..|..++|.+||+.|+|+...|..|+||..++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3467889999999888654       22579999999999999999999999999999999999999987

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.91  E-value=3.3e-05  Score=68.06  Aligned_cols=64  Identities=25%  Similarity=0.415  Sum_probs=58.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 016683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG  156 (384)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  156 (384)
                      -|..||+.|..+.|++|++.|.++|..|....+||.+|+-.||.+++++|+++|+-.....-.|
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G  102 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDG  102 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCc
Confidence            4899999999999999999999999999999999999999999999999999998765544444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.85  E-value=1.6e-05  Score=78.97  Aligned_cols=120  Identities=22%  Similarity=0.180  Sum_probs=80.2

Q ss_pred             CCCHhHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-HHcCCCcccc-CCCchHHHHHHhhC
Q 016683          155 AGTPLIWAAGHGQQEAVKVLLEH-HANPNAETEDNITPLLSAVAAGSLTCLDLL-IQAGANANIV-AGGATPLHIAADIG  231 (384)
Q Consensus       155 ~~~~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L-l~~g~~~~~~-~~g~t~L~~A~~~~  231 (384)
                      +.+-+|+++..+....++.+++. +......+..|.-.+|.++ .+++++.-++ .-+|..++.. ..|+||||+|+..|
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G  652 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRG  652 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhhcC
Confidence            34777777777777777777775 5555556666666777743 3444443333 3455666666 67888888888888


Q ss_pred             CHHHHHHHHHCCCCC------CCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 016683          232 STEIIKCLLKAGADP------NVTDEDGQKPIQVAAARGNREAVEILFPL  275 (384)
Q Consensus       232 ~~~~v~~Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (384)
                      +..++..|++.|++.      ......|.|+-.+|..+|+..+.-+|-+.
T Consensus       653 ~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  653 REKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            888888888766543      33445688888888888888777777543

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.45  E-value=0.0029  Score=50.65  Aligned_cols=142  Identities=15%  Similarity=0.151  Sum_probs=77.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 016683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG  134 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  134 (384)
                      +-...+..|++.+-+.+++..-+...-.    -...++.+..||+..+.++|+|+-+.   ....  +-.+.+..|....
T Consensus        45 ~~~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qn---L~i~--~~~~iFdIA~~~k  115 (192)
T PF03158_consen   45 DMWCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQN---LHIY--NPEDIFDIAFAKK  115 (192)
T ss_pred             CHHHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhc---cCCC--Cchhhhhhhhhcc
Confidence            3444667788888888887776642111    12456678888888888888888432   2221  1234566777776


Q ss_pred             CHHHHH----HHHhCCCCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 016683          135 NIELLT----YLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (384)
Q Consensus       135 ~~~~~~----~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  210 (384)
                      +.++..    ++.++....    ....|             ..|+             ..-|..|+..|-+..+...+++
T Consensus       116 DlsLyslGY~l~~~~~~~~----~~~d~-------------~~ll-------------~~hl~~a~~kgll~F~letlky  165 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMSE----HNEDP-------------TSLL-------------TQHLEKAAAKGLLPFVLETLKY  165 (192)
T ss_pred             chhHHHHHHHHHHhhcccc----cccCH-------------HHHH-------------HHHHHHHHHCCCHHHHHHHHHc
Confidence            666532    122221111    00000             0000             0235556666666666666666


Q ss_pred             CCCccccCCCchHHHHHHhhCCHHHHHHHH
Q 016683          211 GANANIVAGGATPLHIAADIGSTEIIKCLL  240 (384)
Q Consensus       211 g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  240 (384)
                      |.+++     .++|-.|+.+++..++.+++
T Consensus       166 gg~~~-----~~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  166 GGNVD-----IIVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             CCccc-----HHHHHHHHHhhHHHHHHHhh
Confidence            66554     25666666666666666655

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.15  E-value=0.0048  Score=49.46  Aligned_cols=138  Identities=14%  Similarity=0.109  Sum_probs=82.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCHHHHH
Q 016683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVK  172 (384)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~~  172 (384)
                      .|..|+..+...+++..-+...+-   -...++.+..||+..+.++|+|+-++-.-.    +-.+.+..|....+.++..
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qnL~i~----~~~~iFdIA~~~kDlsLys  121 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQNLHIY----NPEDIFDIAFAKKDLSLYS  121 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhccCCC----CchhhhhhhhhccchhHHH
Confidence            466777777777777665542211   123455666677666777777764322111    1123455555555555421


Q ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-----CCCccccCCCchHHHHHHhhCCHHHHHHHHHCCCCCC
Q 016683          173 VLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA-----GANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPN  247 (384)
Q Consensus       173 ~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  247 (384)
                        +.            +               ++++++     +.++...  -..-|..|+.+|....+...+++|-+++
T Consensus       122 --lG------------Y---------------~l~~~~~~~~~~~d~~~l--l~~hl~~a~~kgll~F~letlkygg~~~  170 (192)
T PF03158_consen  122 --LG------------Y---------------KLLFNRMMSEHNEDPTSL--LTQHLEKAAAKGLLPFVLETLKYGGNVD  170 (192)
T ss_pred             --HH------------H---------------HHHHhhcccccccCHHHH--HHHHHHHHHHCCCHHHHHHHHHcCCccc
Confidence              10            0               111111     1111111  1135889999999999999999998876


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHhhcC
Q 016683          248 VTDEDGQKPIQVAAARGNREAVEILFP  274 (384)
Q Consensus       248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~  274 (384)
                      .      ++|..|+.++++.++.+++.
T Consensus       171 ~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  171 I------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             H------HHHHHHHHhhHHHHHHHhhc
Confidence            4      89999999999999998864

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=97.09  E-value=0.0011  Score=35.65  Aligned_cols=27  Identities=56%  Similarity=0.870  Sum_probs=18.0

Q ss_pred             CchHHHHHHhhCCHHHHHHHHHCCCCC
Q 016683          220 GATPLHIAADIGSTEIIKCLLKAGADP  246 (384)
Q Consensus       220 g~t~L~~A~~~~~~~~v~~Ll~~ga~~  246 (384)
                      |.||+|+|+..++.++++.|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            556677777667777777777666554

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.07  E-value=0.0012  Score=35.41  Aligned_cols=26  Identities=46%  Similarity=0.732  Sum_probs=13.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCC
Q 016683           90 GETPLLHAARQGHTETAKYLFEHGAN  115 (384)
Q Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~g~~  115 (384)
                      |.||+|+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44555555555555555555554443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.78  E-value=0.0021  Score=55.68  Aligned_cols=43  Identities=35%  Similarity=0.450  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHchhhHHhhhhHHHHHHHHHHHHHhccCCCchHHHH
Q 016683          329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVLCHFDAIFL  374 (384)
Q Consensus       329 ~~~~~~~~~k~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  374 (384)
                      +-+.+++.+|.+|++..+.++|.+|++.|++||+.+   +.|++++
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~---P~nAVyy  118 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD---PTNAVYY  118 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCcchHH
Confidence            678899999999999999999999999999999999   6666654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.63  E-value=0.0085  Score=55.22  Aligned_cols=63  Identities=32%  Similarity=0.347  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHhCCCCCcC------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 016683           68 KTDVCKYLLEELKLDVDT------QDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA  131 (384)
Q Consensus        68 ~~~~v~~Ll~~~~~~~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  131 (384)
                      -.+.+++|.++ +...|.      .+.-..|+||+|+..|.-++|.+||+.|+|+...|..|.||..++.
T Consensus       403 ~p~~ie~lken-~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKEN-LLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhc-CCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            35677888776 655543      2333568999999999999999999999999999999999988876

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.44  E-value=0.021  Score=47.35  Aligned_cols=45  Identities=20%  Similarity=0.363  Sum_probs=30.6

Q ss_pred             HHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHh
Q 016683           18 FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE   78 (384)
Q Consensus        18 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   78 (384)
                      |-+|+...|++.+..++..                -.+-.+++-+|+.++.-+++-+|+.+
T Consensus       157 ledAV~AsN~~~i~~~Vtd----------------KkdA~~Am~~si~~~K~dva~~lls~  201 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTD----------------KKDAHQAMWLSIGNAKEDVALYLLSK  201 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcc----------------hHHHHHHHHHHhcccHHHHHHHHHhh
Confidence            5667777777776666643                11245677788888888888888875

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.44  E-value=0.03  Score=46.48  Aligned_cols=45  Identities=36%  Similarity=0.459  Sum_probs=32.5

Q ss_pred             CHHHHHHHHHcC-CCcccc----CCCchHHHHHHhhCCHHHHHHHHHCCC
Q 016683          200 SLTCLDLLIQAG-ANANIV----AGGATPLHIAADIGSTEIIKCLLKAGA  244 (384)
Q Consensus       200 ~~~~v~~Ll~~g-~~~~~~----~~g~t~L~~A~~~~~~~~v~~Ll~~ga  244 (384)
                      +..++++.+++| +++|..    +.|.|-|.-|.++++.+++.+|+++||
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            456677777777 456543    567788888888888888888888776

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.19  E-value=0.11  Score=35.92  Aligned_cols=46  Identities=17%  Similarity=0.380  Sum_probs=23.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHh
Q 016683           17 QFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE   78 (384)
Q Consensus        17 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   78 (384)
                      .+..|+..|+.|+++.+++..                ......+..|+..-+.++++||+++
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~----------------~~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN----------------KPDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh----------------ccHHHHHHHHHHHhhHHHHHHHHHh
Confidence            355555666666666555431                0012345556666666666666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=94.29  E-value=0.04  Score=48.88  Aligned_cols=47  Identities=32%  Similarity=0.391  Sum_probs=39.3

Q ss_pred             CCHHHHHHHHHHHHchhhHHhhhhHHHHHHHHHHHHHhccCCCchHH
Q 016683          326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVLCHFDAI  372 (384)
Q Consensus       326 ~~~~~~~~~~~~k~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  372 (384)
                      +.++.-++..|+|.+|++.|+++.|.+|+|.|+..|..+....+-++
T Consensus        89 I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~  135 (536)
T KOG4648|consen   89 IAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHI  135 (536)
T ss_pred             HHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchh
Confidence            44566677788999999999999999999999999999976655443

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.29  E-value=0.16  Score=35.08  Aligned_cols=47  Identities=21%  Similarity=0.309  Sum_probs=31.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 016683           58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH  112 (384)
Q Consensus        58 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  112 (384)
                      ..+..|+..|+.++++.+++. + .+      ...++..|+...+.++++||++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~-~-~~------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKK-N-KP------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHH-h-cc------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            456777777777777777754 1 11      13467777777777777777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.93  E-value=0.33  Score=45.33  Aligned_cols=39  Identities=33%  Similarity=0.332  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHchhhHHhhhhHHHHHHHHHHHHHhccC
Q 016683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVL  366 (384)
Q Consensus       328 ~~~~~~~~~~k~~~~~~~~~~~~~~a~~~~~~~~~~~~~  366 (384)
                      ++..+.+.++|.+|++.|..+.|..|+++|++||+...-
T Consensus       109 e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~  147 (606)
T KOG0547|consen  109 EERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD  147 (606)
T ss_pred             HHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC
Confidence            445667888999999999999999999999999998854

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.35  E-value=1.4  Score=36.46  Aligned_cols=39  Identities=31%  Similarity=0.313  Sum_probs=33.4

Q ss_pred             HHHHHHHHHchhhHHhhhhHHHHHHHHHHHHHhccCCCc
Q 016683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVLCHF  369 (384)
Q Consensus       331 ~~~~~~~k~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  369 (384)
                      ..+...+|..|++.|+.++|++|...|+.|++.-..+..
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~  130 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST  130 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH
Confidence            455677899999999999999999999999987665554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=86.99  E-value=0.94  Score=42.84  Aligned_cols=45  Identities=36%  Similarity=0.494  Sum_probs=36.7

Q ss_pred             HHHHHHchhhHHhhhhHHHHHHHHHHHHHhccCCCchHHHH----HHHHhhc
Q 016683          334 AAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVLCHFDAIFL----LILLQME  381 (384)
Q Consensus       334 ~~~~k~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  381 (384)
                      .++.+.+|++.|+.++|..|+..||++|..+   +-|++++    +|++-++
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~---P~Da~lYsNRAac~~kL~  406 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD---PEDARLYSNRAACYLKLG  406 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHh
Confidence            5667888999999999999999999999998   6677664    4555444

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=84.26  E-value=29  Score=31.39  Aligned_cols=214  Identities=11%  Similarity=0.025  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCC--cCCCCCC
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDV--DTQDEDG   90 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g   90 (384)
                      .+...+-.+...++.+....+++.+..      ....-..|..|+-.+......+..+....+++....++  =..+..|
T Consensus        20 ~gsr~lQ~~l~~~~~~~~~~i~~~l~~------~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g   93 (322)
T cd07920          20 HGSRFLQQKLEEATPEEKELIFDEILP------HVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYG   93 (322)
T ss_pred             hhhHHHHHHhccCCHHHHHHHHHHHHH------hHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchh
Confidence            445566777788888888888887542      22234567789999999999998876666665532111  1245667


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCCHhHHHH
Q 016683           91 ETPLLHAARQGHTETAKYLFEH---GANPTIPSNLGATALHHSAGIGNIELLTYLLSK----GAEVDSESDAGTPLIWAA  163 (384)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----~~~~~~~~~~~~~l~~A~  163 (384)
                      .-.+..+...+..+-...+++.   ....-..|..|...+..+...+..+..+.+++.    -........+...+....
T Consensus        94 ~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l  173 (322)
T cd07920          94 CRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCL  173 (322)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHH
Confidence            7777777777665544444432   111123456677777777776665554444432    111111112223333333


Q ss_pred             HcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCchHHHHHHhhCCH
Q 016683          164 GHGQQE----AVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ----AGANANIVAGGATPLHIAADIGST  233 (384)
Q Consensus       164 ~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~----~g~~~~~~~~g~t~L~~A~~~~~~  233 (384)
                      .....+    +++.+..+-. .-..|..|+..+..+...+..+..+.+++    +-........|...+..+...+..
T Consensus       174 ~~~~~~~~~~l~~~l~~~~~-~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~  250 (322)
T cd07920         174 EHCSEEQREPLLEEILEHAL-ELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASK  250 (322)
T ss_pred             HhCCHHHHHHHHHHHHHHHH-HHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCH
Confidence            333332    2333332211 12345677777777777776543333333    222222224566666666666553

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-29
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-22
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-24
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-17
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-22
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-22
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-20
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-20
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-14
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-20
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		7e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-15
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		9e-18
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-17
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-13
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-17
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-17
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-16
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-17
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-17
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-16
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-16
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-13
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-16
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-16
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		6e-16
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-16
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-14
1uoh_A	226	Human Gankyrin Length = 226		3e-16
1uoh_A	226	Human Gankyrin Length = 226		5e-09
1uoh_A	226	Human Gankyrin Length = 226		1e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-16
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-16
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-09
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		9e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-16
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		7e-16
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-15
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-15
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-14
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-15
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		7e-15
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-14
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-14
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-14
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-14
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-14
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		6e-14
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		5e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-09
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		8e-12
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		8e-12
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		8e-12
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-11
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		3e-11
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		6e-11
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		9e-11
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		1e-10
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-04
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-10
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		5e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-10
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		7e-08
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-10
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		8e-08
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-10
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-10
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-10
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-07
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-10
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-10
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-10
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		8e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		9e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-07
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-09
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-06
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		1e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-09
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		2e-09
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		3e-06
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		3e-09
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		4e-09
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		5e-09
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		6e-09
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		7e-09
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		2e-07
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-08
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-08
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		3e-08
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		9e-06
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		9e-07
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-06
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-06
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-05
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		2e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		3e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		5e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		3e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		6e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		3e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		6e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		4e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-05
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		5e-06
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		6e-06
1ycs_B	239	P53-53bp2 Complex Length = 239		6e-06
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		6e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		6e-06
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		8e-06
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		8e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-04
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		2e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		8e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		2e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		7e-05
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		5e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		9e-05
3deo_A	183	Structural Basis For Specific Substrate Recognition		2e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		7e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		3e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		3e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		7e-04
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/255 (35%), Positives = 134/255 (52%), Gaps = 12/255 (4%)
Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+  K
Sbjct: 21  ASFMGHLPIVKNLLQ------RGASPNVSNVK---VETPLHMAARAGHTEVAKYLLQN-K 70
Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
             V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E + 
Sbjct: 71  AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            LL K A     +  G TPL  AA +G+    ++LLE  A+PNA  ++ +TPL  AV   
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 190
Query: 200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
           +L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct: 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250
Query: 259 VAAARGNREAVEILF 273
           +AA  G+ E V +L 
Sbjct: 251 LAAQEGHAEMVALLL 265

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 108/219 (49%), Gaps = 5/219 (2%)
Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
           TPL  A+  GH    K L + GA+P + +    T LH +A  G+ E+  YLL   A+V++
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 152 ES-DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL-TCLDLLIQ 209
           ++ D  TPL  AA  G    VK+LLE++ANPN  T    TPL  A   G + T L LL +
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 210 XXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
                       TPLH+AA  G   + + LL+  A PN   ++G  P+ VA    N + V
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 195
Query: 270 EILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNL 308
           ++L P     P  P W  +G      +    Q+E  R+L
Sbjct: 196 KLLLP-RGGSPHSPAW--NGYTPLHIAAKQNQVEVARSL 231

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
           L+ AA  G+ +  K L E+GA+P    + G T LH++A  G+ E++  LLSKGA+ ++ +
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD  TPL +AA +G +E VK+LL   A+PNA+  D                         
Sbjct: 68  SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG------------------------ 103
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH AA+ G  EI+K LL  GADPN +D DG+ P+ +A   GN E V++L
Sbjct: 104 --------RTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI-QXX 211
           S+ G  LI AA +G ++ VK LLE+ A+PNA   D  TPL  A   G    + LL+ +  
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 212 XXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH AA+ G  EI+K LL  GADPN  D DG+ P+  AA  G++E V++
Sbjct: 62  DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 272 LF 273
           L 
Sbjct: 122 LL 123

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 12/214 (5%)
Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
           NKR  LH AA  G  D+C ++L +   ++DT  ED  TPL+ AA   H E  KYL + GA
Sbjct: 10  NKRSPLHAAAEAGHVDIC-HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKG-AEVDSESDAG-TPLIWAAGHGQQEAVK 172
                   G+T LH +A  G+ E++ YLLS G  +V+ + D G TP+IWA  +   + VK
Sbjct: 69  LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 173 VLLEHHANPNA-ETEDNITPLLSAVAAGSLTCLD----LLIQXXXXXXXXXXXXTPLHIA 227
           +LL   ++ N  + E+NI    +A +     C+D    LL              +PLHIA
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSG----CVDIAEILLAAKCDLHAVNIHGDSPLHIA 184
Query: 228 ADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
           A     + +   L   +D  + +++G+ P+Q A+
Sbjct: 185 ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQX-XXXXXXXXXXXTPLHIAADIGSTEII 236
           H N   E ++  +PL +A  AG +    +L+Q             TPL  AA+    E +
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           K L+KAGA  +  D +G   + +AA +G+ E V+ L 
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 2/141 (1%)
Query: 134 GNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
           GN + +  LL  GA+V+ S+SD  TPL  AA +G +E VK+LL   A+PNA+  D  TPL
Sbjct: 15  GNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPL 74
Query: 193 LSAVAAGSLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
             A   G    + LL+ Q            TPLH+AA+ G  E++K LL  GADPN +D 
Sbjct: 75  HLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDS 134
Query: 252 DGQKPIQVAAARGNREAVEIL 272
           DG+ P+ +A   GN E V++L
Sbjct: 135 DGRTPLDLAREHGNEEVVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 11/160 (6%)
Query: 16  QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYL 75
           ++ + AA  GN D +K + +   D          +  D++ R  LH+AA+EG  ++ K L
Sbjct: 6   KRLIEAAENGNKDRVKDLIENGAD---------VNASDSDGRTPLHYAAKEGHKEIVKLL 56
Query: 76  LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
           + +   DV+ +D DG TPL +AA++GH E  K L   GA+     + G T LH++A  G+
Sbjct: 57  ISK-GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 115
Query: 136 IELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVL 174
            E++  L+SKGA+V+ S+SD  TPL  A  HG +E VK+L
Sbjct: 116 KEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 93/180 (51%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
           L+ AA  G+ +  K L E+GA+     + G T LH++A  G+ E++  L+SKGA+V++ +
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD  TPL +AA  G +E VK+L+   A+ NA+  D                         
Sbjct: 68  SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG------------------------ 103
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH AA  G  EI+K L+  GAD N +D DG+ P+ +A   GN E V++L
Sbjct: 104 --------RTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI-QXX 211
           S+ G  LI AA +G ++ VK L+E+ A+ NA   D  TPL  A   G    + LLI +  
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 212 XXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH AA  G  EI+K L+  GAD N  D DG+ P+  AA  G++E V++
Sbjct: 62  DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 272 LF 273
           L 
Sbjct: 122 LI 123

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 11/160 (6%)
Query: 16  QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYL 75
           ++ + AA  GN D +K + +   D          +  D++ R  LH AA  G  +V K L
Sbjct: 6   KRLIEAAENGNKDRVKDLIENGAD---------VNASDSDGRTPLHHAAENGHKEVVKLL 56
Query: 76  LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
           + +   DV+ +D DG TPL HAA  GH E  K L   GA+     + G T LHH+A  G+
Sbjct: 57  ISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 115
Query: 136 IELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVL 174
            E++  L+SKGA+V+ S+SD  TPL  A  HG +E VK+L
Sbjct: 116 KEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Query: 134 GNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
           GN + +  L+  GA+V+ S+SD  TPL  AA +G +E VK+L+   A+ NA+  D  TPL
Sbjct: 15  GNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 74
Query: 193 LSAVAAGSLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
             A   G    + LLI +            TPLH AA+ G  E++K L+  GAD N +D 
Sbjct: 75  HHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS 134
Query: 252 DGQKPIQVAAARGNREAVEIL 272
           DG+ P+ +A   GN E V++L
Sbjct: 135 DGRTPLDLAREHGNEEVVKLL 155

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
           N R  LH AAR G  +V K LLE    DV+ +D++G TPL  AAR GH E  K L E GA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKV 173
           +       G T LH +A  G++E++  LL  GA+V+++   G TPL  AA +G  E VK+
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 174 LLE 176
           LLE
Sbjct: 120 LLE 122

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXX 216
           TPL  AA +G  E VK+LLE  A+ NA+ ++  TPL  A   G L  + LL++       
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 217 X-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
                 TPLH+AA  G  E++K LL+AGAD N  D++G+ P+ +AA  G+ E V++L 
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+     ++G T LH +A  G++E++  LL  GA+V+++ 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL++ A+ NA   +  TPL                    
Sbjct: 78  SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA+IG  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 118 ------------HLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 91/180 (50%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+       G T LH +A +G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
            +G TPL  AA  G  E V+VLL++ A+ NA+  D I         GS            
Sbjct: 78  FSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD--DTI---------GS------------ 114
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AAD G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 115 ---------TPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NAE     TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 213 XXXXXX-XXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLK GAD N  D  G  P+ +AA  G+ E VE+
Sbjct: 72  DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEV 131
Query: 272 LFPLTSEDPSIPKW 285
           L    ++  +  K+
Sbjct: 132 LLKYGADVNAQDKF 145

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
           LL AAR G  +  + L  +GA+     + G+T LH +A IG+ E++  LL  GA+V++ +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           +D  TPL  AA +G  E V+VLL++ A+ NA+    +TPL                    
Sbjct: 78  TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AAD G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 118 ------------HLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 88/180 (48%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
           LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  GA+V++ +
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
            D  TPL  AA  G  E V+VLL+  A+ NA+ +D  TPL                    
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL-------------------- 105
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA  G  EI++ LLKAGAD N  D+ G+ P  +A   GN +  E+L
Sbjct: 106 ------------HLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           D G  L+ AA  GQ + V++L+ + A+ NA+ +D  TPL  A   G L  +++L++    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 214 XXXXXXX-XTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  EI++ LLKAGAD N  D+DG  P+ +AA  G+ E VE+L
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 273 F 273
Sbjct: 121 L 121

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 87/184 (47%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+     N G T LH +A  G++E++  LL  GA+VD+  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL++ A+ NA   D +TPL                    
Sbjct: 78  VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 118 ------------HLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 85/180 (47%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+     N G T LH +A  G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL+H A+ NA   D                         
Sbjct: 78  LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDG------------------------ 113
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 114 --------HTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA   D  TPL  A + G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 213 XXXXXX-XXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLK GAD N  D DG  P+ +AA  G+ E VE+
Sbjct: 72  DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 272 LF 273
           L 
Sbjct: 132 LL 133

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+      LG T LH +A  G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           + G TPL  AA +G  E V+VLL+H A+ NA+  +  TPL                    
Sbjct: 78  NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 118 ------------HLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA      TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AAD G  EI++ LLK GAD N  D +G  P+ +AA  G+ E VE+
Sbjct: 72  DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEV 131
Query: 272 LFPLTSE 278
           L    ++
Sbjct: 132 LLKYGAD 138

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA+ +D  TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 213 XXXXXXXXX-TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLKAGAD N  D+DG  P+ +AA  G+ E VE+
Sbjct: 72  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 131
Query: 272 LF 273
           L 
Sbjct: 132 LL 133

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 88/180 (48%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
           LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  GA+V++ +
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
            D  TPL  AA  G  E V+VLL+  A+ NA+ +D  TPL                    
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL-------------------- 105
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA  G  EI++ LLKAGAD N  D+ G+ P  +A   G+ +  E+L
Sbjct: 106 ------------HLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           D G  L+ AA  GQ + V++L+ + A+ NA+ +D  TPL  A   G L  +++L++    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 214 XXXXXXX-XTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  EI++ LLKAGAD N  D+DG  P+ +AA  G+ E VE+L
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 273 F 273
Sbjct: 121 L 121

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+      +G T LH +A  G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL++ A+ NA+ ++ ITPL                    
Sbjct: 78  TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA+ G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 118 ------------HLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  G+ + V++L+ + A+ NA      TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLK GAD N  D++G  P+ +AA RG+ E VE+
Sbjct: 72  DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEV 131
Query: 272 LFPLTSE 278
           L    ++
Sbjct: 132 LLKYGAD 138

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 9/194 (4%)
Query: 76  LEELKLDV-------DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128
           LEELK  +          D+D  T L  A   GHTE  ++L + G       + G + LH
Sbjct: 19  LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 78
Query: 129 HSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETED 187
            +A  G  E++  LL KGA+V++ +  G TPL +AA   + E   +LLE  ANP+A+   
Sbjct: 79  IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 188 NITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADP 246
             T +  A A G+L  + +L+              TPLH+A D    E  K L+  GA  
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198
Query: 247 NVTDEDGQKPIQVA 260
            + +++ + P+QVA
Sbjct: 199 YIENKEEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
           TALH +   G+ E++ +LL  G  V+ + DAG +PL  AA  G+ E VK LL   A  NA
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
             ++  TPL                                H AA     EI   LL+ G
Sbjct: 102 VNQNGCTPL--------------------------------HYAASKNRHEIAVMLLEGG 129
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           A+P+  D      +  AAA+GN + + IL 
Sbjct: 130 ANPDAKDHYEATAMHRAAAKGNLKMIHILL 159

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +D+ T L  A +AG    ++ L+Q             +PLHIAA  G  EI+K LL  GA
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280
             N  +++G  P+  AA++ NR  + ++      +P
Sbjct: 98  QVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANP 132

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 3/159 (1%)
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
           S+LG   L  +A  G  + +  L++ GA+V++E D+G TPL  AA  G  E V+VLL+H 
Sbjct: 12  SDLGKKLLE-AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG 70
Query: 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXX-TPLHIAADIGSTEIIK 237
           A+ NA  +   TPL  A   G L  +++L++             TPLH+AAD G  EI++
Sbjct: 71  ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVE 130
Query: 238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT 276
            LLK GAD N  D+ G+    ++   GN +  EIL  L 
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 9/194 (4%)
Query: 76  LEELKLDV-------DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128
           LEELK  +          D+D  T L  A   GHTE  ++L + G       + G + LH
Sbjct: 20  LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 79
Query: 129 HSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETED 187
            +A  G  E++  LL KGA+V++ +  G TPL +AA   + E   +LLE  ANP+A+   
Sbjct: 80  IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 139
Query: 188 NITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADP 246
             T +  A A G+L  + +L+              TPLH+A D    E  K L+  GA  
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199
Query: 247 NVTDEDGQKPIQVA 260
            + +++ + P+QVA
Sbjct: 200 YIENKEEKTPLQVA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
           TALH +   G+ E++ +LL  G  V+ + DAG +PL  AA  G+ E VK LL   A  NA
Sbjct: 43  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
             ++  TPL                                H AA     EI   LL+ G
Sbjct: 103 VNQNGCTPL--------------------------------HYAASKNRHEIAVMLLEGG 130
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           A+P+  D      +  AAA+GN + + IL 
Sbjct: 131 ANPDAKDHYEATAMHRAAAKGNLKMIHILL 160

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +D+ T L  A +AG    ++ L+Q             +PLHIAA  G  EI+K LL  GA
Sbjct: 39  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280
             N  +++G  P+  AA++ NR  + ++      +P
Sbjct: 99  QVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANP 133

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 95/199 (47%), Gaps = 2/199 (1%)
Query: 64  AREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
           A  GK D  K  +   K      D+D  T L  A   GHTE  ++L + G       + G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN 182
            + LH +A  G  E++  LL KGA V++ +  G TPL +AA   + E   +LLE  ANP+
Sbjct: 74  WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 183 AETEDNITPLLSAVAAGSLTCLD-LLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLK 241
           A+   + T +  A A G+L  +  LL              TPLH+A D    E  K L+ 
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 242 AGADPNVTDEDGQKPIQVA 260
            GA   + +++ + P+QVA
Sbjct: 194 QGASIYIENKEEKTPLQVA 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 33/150 (22%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
           TALH +   G+ E++ +LL  G  V+ + DAG +PL  AA  G+ E VK LL   A+ NA
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
             ++  TPL                                H AA     EI   LL+ G
Sbjct: 102 VNQNGCTPL--------------------------------HYAASKNRHEIAVMLLEGG 129
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           A+P+  D      +  AAA+GN + V IL 
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILL 159

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +D+ T L  A +AG    ++ L+Q             +PLHIAA  G  EI+K LL  GA
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280
             N  +++G  P+  AA++ NR  + ++      +P
Sbjct: 98  HVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANP 132

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 95/199 (47%), Gaps = 2/199 (1%)
Query: 64  AREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
           A  GK D  K  +   K      D+D  T L  A   GHTE  ++L + G       + G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN 182
            + LH +A  G  E++  LL KGA V++ +  G TPL +AA   + E   +LLE  ANP+
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 183 AETEDNITPLLSAVAAGSLTCLD-LLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLK 241
           A+   + T +  A A G+L  +  LL              TPLH+A D    E  K L+ 
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 242 AGADPNVTDEDGQKPIQVA 260
            GA   + +++ + P+QVA
Sbjct: 194 QGASIYIENKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
           TALH +   G+ E++ +LL  G  V+ + DAG +PL  AA  G  E VK LL   A+ NA
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
             ++  TPL                                H AA     EI   LL+ G
Sbjct: 102 VNQNGCTPL--------------------------------HYAASKNRHEIAVMLLEGG 129
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           A+P+  D      +  AAA+GN + V IL 
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILL 159

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +D+ T L  A +AG    ++ L+Q             +PLHIAA  G  EI+K LL  GA
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280
             N  +++G  P+  AA++ NR  + ++      +P
Sbjct: 98  HVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANP 132

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
           LL AAR G  +  + L  +GA+     + G T LH +A +G++E++  LL  GA+V++ +
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           ++  TPL  AA  G  E V+VLL++ A+ NA+    ITP                     
Sbjct: 66  TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITP--------------------- 104
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                      L++AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 105 -----------LYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           D G  L+ AA  GQ + V++L+ + A+ NA      TPL  A A G L  +++L++    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 214 XXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA +G  EI++ LLK GAD N  D  G  P+ +AA  G+ E VE+L
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 273 F 273
Sbjct: 121 L 121

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 85/184 (46%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  GA+V+++ 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL++ A+ NA      TPL                    
Sbjct: 78  SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 118 ------------HLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 33/175 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+     N G T LH +A  G++E++  LL  GA+VD+  
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL++ A+ NA                     D+      
Sbjct: 78  VYGFTPLHLAAMTGHLEIVEVLLKYGADVNA--------------------FDM------ 111
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE 267
                    TPLH+AAD G  EI++ LLK GAD N  D+ G+    ++   GN +
Sbjct: 112 ------TGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ-XX 211
           SD G  L+ AA  GQ + V++L+ + A+ NA     +TPL  A  +G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 212 XXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLK GAD N  D  G  P+ +AA  G+ E VE+
Sbjct: 72  DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEV 131
Query: 272 LFPLTSEDPSIPKW 285
           L    ++  +  K+
Sbjct: 132 LLKYGADVNAQDKF 145

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 35/242 (14%)
Query: 28  DLLKKIAKQLDDQGKGLSKTVADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDT 85
           D++K     + ++ + L +   D++  +K     LH+AA   + D+ KY + +  + VD 
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI-VDQ 70
Query: 86  QDED-GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLS 144
              D   TPL  A RQGH      L ++GA+P++    G + +H +A  G+  ++ YL++
Sbjct: 71  LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 145 KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203
           KG +VD     G TPL+WAA             H  +P                    T 
Sbjct: 131 KGQDVDMMDQNGMTPLMWAA----------YRTHSVDP--------------------TR 160
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           L L               T LH A   G+T +I  LL+AGA+ +  +  G+  + +A  R
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR 220
Query: 264 GN 265
            N
Sbjct: 221 KN 222

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 86/184 (46%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
            AG TPL  AA  G  E V+VLL++ A+ NA   +                         
Sbjct: 78  HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG------------------------ 113
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 114 --------HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 85/184 (46%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL+H A+ NA                             
Sbjct: 78  IMGSTPLHLAALIGHLEIVEVLLKHGADVNA----------------------------- 108
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA +G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 109 ---VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 85/184 (46%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL+H A+ NA                             
Sbjct: 78  IXGSTPLHLAALIGHLEIVEVLLKHGADVNA----------------------------- 108
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA +G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 109 ---VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 83/184 (45%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+       G T LH     G++E++  LL   A+V++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
            +G TPL  AA  G  E V+VLL++ A+ NA                             
Sbjct: 78  KSGWTPLHLAAYRGHLEIVEVLLKYGADVNA----------------------------- 108
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA+ G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 109 ---MDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA     ITPL   V  G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLK GAD N  D  G  P+ +AA  G+ E VE+
Sbjct: 72  DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEV 131
Query: 272 LFPLTSE 278
           L    ++
Sbjct: 132 LLKYGAD 138

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA+ E  +TPL  A A G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA IG  EI + LLK GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           D G  L+ AA  GQ + V++L+ + A+ NA  ++ +TPL  A A G L  +++L++    
Sbjct: 5   DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 214 XXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  EI++ LLK GAD N  D  G  P+ +AA  G  E VE+L
Sbjct: 65  VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 273 F 273
Sbjct: 125 L 125

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 98/223 (43%), Gaps = 18/223 (8%)
Query: 58  GALHFAA-REGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP 116
           GA+  AA   G T+    LLE    D++  + DG T L  A    + +  K+L E+GAN 
Sbjct: 41  GAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99
Query: 117 TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPL-----IWAAGHGQQEA 170
             P N G   LH +A  G +++  YL+S+GA V +  S+  TPL            Q E 
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159
Query: 171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADI 230
            +  ++  A    E    +      + +G +                    T LH+AA  
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHIN----------DVRHAKSGGTALHVAAAK 209
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           G TE++K L++A  D N+ D DG  P+  AA  G  EA  IL 
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA  ED +TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ A   GQ + V++L+ + A+ NA  +  +TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA +G  EI++ LL+ GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
           N R  LH AAR G  +V K LLE    DV+ +D++G TPL  AAR GH E  K L E GA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
           +       G T LH +A  G++E++  LL  GA
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           +G TPL  AAR GH E  K L E GA+       G T LH +A  G++E++  LL  GA+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLE 176
           V+++   G TPL  AA +G  E VK+LLE
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 32/117 (27%)
Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXX 216
           TPL  AA +G  E VK+LLE  A+ NA+ ++                             
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNG---------------------------- 35
Query: 217 XXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
                TPLH+AA  G  E++K LL+AGAD N  D++G+ P+ +AA  G+ E V++L 
Sbjct: 36  ----RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ A   GQ + V++L+ + A+ NA  +  +TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA +G  EI++ LL+ GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ A   GQ + V++L+ + A+ NA  +  +TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA +G  EI++ LL+ GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 1/200 (0%)
Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           +H AA  G     + L+ +    V+    D  +PL  A   GH    K L +HGA     
Sbjct: 7   MHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA 179
           +    T L ++   G+ + +  LL  GA V  ESD  +P+  AA  G  E V  L+ +  
Sbjct: 66  TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGG 125
Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCL 239
           N + +     TPL  A       C+  L++            +PLH  A   S E+   L
Sbjct: 126 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLL 185
Query: 240 LKAGADPNVTDEDGQKPIQV 259
           +  GAD    + +G++P+++
Sbjct: 186 MDFGADTQAKNAEGKRPVEL 205

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 1/150 (0%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNA 183
           + +H +A  G+   L  L+S+G  V+   +D  +PL  A   G    VK+LL+H A  N 
Sbjct: 5   SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
            T D  TPL +A  +GS  C++LL+Q            +P+H AA  G  E +  L+  G
Sbjct: 65  VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 124
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
            + +        P+ +A     R  V+ L 
Sbjct: 125 GNIDHKISHLGTPLYLACENQQRACVKKLL 154

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NAE +  +TPL  A     L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 213 XXXXXXXX-XTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+ A  G  EI++ LLK GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 5/225 (2%)
Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           +H AA  G     + L+ +    V+    D  +PL  A   GH    K L +HGA     
Sbjct: 63  MHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA 179
           +    T L ++   G+ + +  LL  GA V  ESD  +P+  AA  G  E V  L+ +  
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGG 181
Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCL 239
           N + +     TPL  A       C+  L++            +PLH      S E+   L
Sbjct: 182 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLL 241
Query: 240 LKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPK 284
           +  GAD    + +G++P+++         +  LF L  E  S+PK
Sbjct: 242 MDFGADTQAKNAEGKRPVELVPP---ESPLAQLF-LEREGASLPK 282

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA      TPL  A     L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 213 XXXXXXXX-XTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 120/306 (39%), Gaps = 36/306 (11%)
Query: 3   PDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHF 62
           P A   L    +  + L AA +GN + L  +   L+              D  K   LH 
Sbjct: 13  PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN--------VNCHASDGRKSTPLHL 64
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           AA   +  + + LL+    DV  +D+ G  PL +A   GH E  + L +HGA        
Sbjct: 65  AAGYNRVRIVQLLLQH-GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123
Query: 123 GATALHHSAGIGNIELLTYLLSKGAE---VDSESDA-------------------GTPLI 160
             T LH +A    +E+ + LLS GA+   V+    +                   G  L+
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL 183
Query: 161 WAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA---GSLTCLDLLIQXXXXXXXX 217
            AA       VK  L        + + + T L  AVA+         +LL++        
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK 243
Query: 218 XX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT 276
                TPLH+AA+    ++++ L K GA  N  D  GQ  +  AA  G+ +   +L    
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Query: 277 SEDPSI 282
           S DPSI
Sbjct: 304 S-DPSI 308

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 19/213 (8%)
Query: 69  TDVCKYLLEELKLDVDTQDEDGE-TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL 127
            D+ + LLE    +V+ Q+E+G  TPL +A +    +  + L  HGA+P +    GAT  
Sbjct: 18  VDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN---- 182
             +A  G+++LL   LSKGA+V+     G T  + AA +G+ +A+K L +  AN N    
Sbjct: 77  LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136
Query: 183 -AETEDNI-----TPLLSAVAAGSLTCLDLLIQXXXXXXXX---XXXXTPLH--IAADIG 231
             E ++ +     T L+ A   G +  L +L+                  +H  +++D  
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196
Query: 232 STE-IIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
             E I   LL  GAD NV  E G+ P+ +A  +
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 34/142 (23%)
Query: 135 NIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
           +++L+  LL  GA V+ + + G  TPL  A    +++ V++LL H A+P    ++  TP 
Sbjct: 17  DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 193 LSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDED 252
           L                                +AA  GS +++K  L  GAD N  D  
Sbjct: 77  L--------------------------------LAAIAGSVKLLKLFLSKGADVNECDFY 104
Query: 253 GQKPIQVAAARGNREAVEILFP 274
           G      AA  G  +A++ L+ 
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYK 126

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 19/223 (8%)
Query: 69  TDVCKYLLEELKLDVDTQDEDGE-TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL 127
            D+ + LLE    +V+ Q+E+G  TPL +A +    +  + L  HGA+P +    GAT  
Sbjct: 38  VDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
Query: 128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN---- 182
             +A  G+++LL   LSKGA+V+     G T  + AA +G+ +A+K L +  AN N    
Sbjct: 97  ILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 156
Query: 183 -AETEDNI-----TPLLSAVAAGSLTCLDLLIQXXXXXXXX---XXXXTPLH--IAADIG 231
             E ++ +     T L+ A   G +  L +L+                  +H  +++D  
Sbjct: 157 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 216
Query: 232 STE-IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
             E I   LL  GAD NV  E G+ P+ +A  + +   V+ L 
Sbjct: 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 159 LIWAAGHGQQEAVKVLLEHHANPN-AETEDNITPLLSAVAAGSLTCLDLLIQXXXX-XXX 216
           LI A  +   + V+ LLE  AN N  E E   TPL +AV       ++LL++        
Sbjct: 29  LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 217 XXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
                TP  +AA  GS +++K  L  GAD N  D  G      AA  G  +A++ L+
Sbjct: 89  KKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 145

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
           ++H  A +G+ D  K  L +    V+  DE G TPL+ A+  G  ET ++L E GA+P I
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEH 177
            +    +AL  ++  G  +++  LL +  +++  + + GTPL++A      + V+ LL  
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124
Query: 178 HANPNAETEDNITPLLSAVAAG 199
            A+   E +   TP+  AVA G
Sbjct: 125 GADLTTEADSGYTPMDLAVALG 146

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 126 ALHHSAGIGNIELLTYLLSKGAEVDSESD--AGTPLIWAAGHGQQEAVKVLLEHHANPNA 183
           ++H  A  G ++ L   L KG  + ++ D    TPLIWA+  G+ E V+ LLE  A+P+ 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQX-XXXXXXXXXXXTPLHIAADIGSTEIIKCLLKA 242
             ++  + L  A   G    + LL++             TPL  A      + ++ LL  
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124
Query: 243 GADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           GAD     + G  P+ +A A G R+  +++
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 83  VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
           ++  DE+G TPL+ AA  G     ++L ++GA+P +      +AL  +   G  +++  L
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 143 LSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
           L  G +V+  + + GTPL++A      + VK+LLE  A+P  ET+     +  AVA G
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 162

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167
           L+  GAN        + ++H  A  G +  L   + +   ++   + G TPL+WAA HGQ
Sbjct: 13  LYFQGAN--------SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQ 64
Query: 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHI 226
              V+ LL++ A+P    +   + L  A + G    + +L+              TPL  
Sbjct: 65  IAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 124
Query: 227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           A      + +K LL++GADP +  + G   + +A A G R   +++
Sbjct: 125 AVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 150 DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
           D E    TPL +AAG+ +   V+ LL+H A+ +A+ +  + PL +A + G     +LL++
Sbjct: 37  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Query: 210 XXXXXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
                        TPLH AA  G  EI K LL+ GADP   + DG  P+ +
Sbjct: 97  HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 150 DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
           D E    TPL +AAG+ +   V+ LL+H A+ +A+ +  + PL +A + G     +LL++
Sbjct: 41  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 100
Query: 210 XXXXXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
                        TPLH AA  G  EI K LL+ GADP   + DG  P+ +
Sbjct: 101 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 83  VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
           ++  DE+G TPL+ AA  G     ++L ++GA+P +      +AL  +   G  +++  L
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 143 LSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
           L  G +V+  + + GTPL++A      + VK+LLE  A+P  ET+     +  AVA G
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 151 SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQX 210
           ++ +  TPL+WAA HGQ   V+ LL++ A+P    +   + L  A + G    + +L+  
Sbjct: 32  TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 91
Query: 211 XX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
                       TPL  A      + +K LL++GADP +  + G   + +A A G R   
Sbjct: 92  GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 151
Query: 270 EIL 272
           +++
Sbjct: 152 QVI 154

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 83  VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
           ++  DE+G TPL+ AA  G     ++L ++GA+P +      +AL  +   G  +++  L
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 143 LSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
           L  G +V+  + + GTPL++A      + VK+LLE  A+P  ET+     +  AVA G
Sbjct: 87  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 151 SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQX 210
           ++ +  TPL+WAA HGQ   V+ LL++ A+P    +   + L  A + G    + +L+  
Sbjct: 30  TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 89
Query: 211 XX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
                       TPL  A      + +K LL++GADP +  + G   + +A A G R   
Sbjct: 90  GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 149
Query: 270 EIL 272
           +++
Sbjct: 150 QVI 152

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 150 DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
           D E    TPL +AAG+ +   V+ LL+H A+ +A+ +  + PL +A + G     +LL++
Sbjct: 39  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 98
Query: 210 XXXXXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
                        TPLH AA  G  EI K LL+ GADP   + DG  P+ +
Sbjct: 99  HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
           ++H  A +G+ D  K  L +    V+  DE G TPL+ A+  G  ET ++L E GA+P I
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEH 177
            +    +AL  ++  G  +++  LL +  +++  + + GTPL++A      + V+ LL  
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLAR 124
Query: 178 HANPNAETEDNITPLLSAVAAG 199
            A+   E +   TP+  AVA G
Sbjct: 125 GADLTTEADSGYTPMDLAVALG 146

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 126 ALHHSAGIGNIELLTYLLSKGAEVDSESD--AGTPLIWAAGHGQQEAVKVLLEHHANPNA 183
           ++H  A  G ++ L   L KG  + ++ D    TPLIWA+  G+ E V+ LLE  A+P+ 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQX-XXXXXXXXXXXTPLHIAADIGSTEIIKCLLKA 242
             ++  + L  A   G    + LL++             TPL  A      + ++ LL  
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLAR 124
Query: 243 GADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           GAD     + G  P+ +A A G R+  +++
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 88  EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
           +DG TPL +AA+ GH E  K L   GA+    S  G T LH +A  G+ E++  LL+KGA
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 148 EVDSES-DAGTPLIWAAGHGQQEAVKVLLEHHANPNAET 185
           +V++ S D  TP   A  +G  E VK+L    A+ NA +
Sbjct: 67  DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 51/119 (42%), Gaps = 32/119 (26%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           D  TPL  AA +G  E VK LL   A+ NA ++D                          
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG------------------------- 42
Query: 214 XXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                   TPLH+AA  G  EI+K LL  GAD N   +DG  P  +A   G+ E V++L
Sbjct: 43  -------NTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
           L V+   +DG +PL  AA  G  +    L +HGAN    +   A  LH +   G+ +++ 
Sbjct: 77  LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVK 136
Query: 141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            LL   A+ + +  +G TPLI+A   G  E V +LL+H A+ NA      T L  AV   
Sbjct: 137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEK 196
Query: 200 SLTCLDLLI 208
            +  ++LL+
Sbjct: 197 HVFVVELLL 205

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 33/128 (25%)
Query: 146 GAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD 205
           G  V S+ D  +PL  AA HG+ + + +LL+H AN  A   D                  
Sbjct: 78  GVNVTSQ-DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQ----------------- 119
Query: 206 LLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265
                            PLH+A   G  +++KCLL + A PN  D  G  P+  A + G+
Sbjct: 120 ---------------AVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH 164
Query: 266 REAVEILF 273
            E V +L 
Sbjct: 165 HELVALLL 172

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           A+ +D   R  LH A       V + LL     +++ +  DG TPL+ AAR       + 
Sbjct: 77  ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 136
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167
           L    A+     N G TALH +A + N E +  LL   A  D++ D   TPL  AA  G 
Sbjct: 137 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS 196
Query: 168 QEAVKVLLEHHAN 180
            EA K LL++ AN
Sbjct: 197 YEASKALLDNFAN 209

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 137 ELLTYLLSKGAEVDSESD--AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLS 194
           ++++ LL++GAE+++  D    T L  AA   + +A K LL+  A+ N++     TPL +
Sbjct: 31  QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 90
Query: 195 AVAAGSLTCLDLLIQXXXXXXXXXXX--XTPLHIAADIGSTEIIKCLLKAGADPNVTDED 252
           AVAA ++    +L++              TPL +AA +    +++ L+ A AD N  D  
Sbjct: 91  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 150
Query: 253 GQKPIQVAAARGNREAVEILF 273
           G+  +  AAA  N EAV IL 
Sbjct: 151 GKTALHWAAAVNNTEAVNILL 171

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 3/189 (1%)
Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
           D  GET L  AAR   ++ AK L E  A+  I  N+G T LH +       +   LL ++
Sbjct: 19  DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
             ++D+   D  TPLI AA    +  ++ L+  HA+ NA  +   + L  +A        
Sbjct: 79  ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 138
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + LL              TPL +AA  GS E  K LL   A+ ++TD   + P  +A  R
Sbjct: 139 VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 198
Query: 264 GNREAVEIL 272
            + + V +L
Sbjct: 199 MHHDIVRLL 207

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L  + A+ NA      TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 213 -XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA     EI++ LLK GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPL 275
           L  L
Sbjct: 132 LQKL 135

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 15/197 (7%)
Query: 15  VQQFLNAACTGNL--DLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVC 72
           +Q++L  AC  +   +L+++           L   V +I D+N   ALH++       V 
Sbjct: 68  LQEWLRLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVV 127
Query: 73  KYLLEELKLDVDTQDEDGETPLLHAA-----RQGHTETAKYLFEHGANPTIPSNLGATAL 127
           + LL+     VD Q+  G +P++  A      Q   ET   LF  G      S  G TAL
Sbjct: 128 QQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTAL 187
Query: 128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAET- 185
             +   G ++++  LL+  A+V+ + D G T L+ A  HG +E   +LL   A P+ +  
Sbjct: 188 MLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL---AVPSCDIS 244
Query: 186 ---EDNITPLLSAVAAG 199
               D  T L+ A+ AG
Sbjct: 245 LTDRDGSTALMVALDAG 261

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 37/195 (18%)
Query: 123 GATALHHSAGIGNIELLTYLLSKG-AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHAN 180
           G TALH+S    N  ++  LL  G  +VD ++ AG +P++  A                 
Sbjct: 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL---------------- 154
Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLL 240
              +T+D+I  +L     G++                    T L +A   G  +++K LL
Sbjct: 155 ATLKTQDDIETVLQLFRLGNIN-----------AKASQAGQTALMLAVSHGRVDVVKALL 203
Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYM------ 294
              AD NV D+DG   +  A   G++E   +L  + S D S+     DG    M      
Sbjct: 204 ACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDR--DGSTALMVALDAG 261
Query: 295 QSESGKQLEETRNLK 309
           QSE    L    N+K
Sbjct: 262 QSEIASMLYSRMNIK 276

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 3/189 (1%)
Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
           D  GET L  AAR   ++ AK L E  A+  I  N+G T LH +       +   L+ ++
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
             ++D+   D  TPLI AA    +  ++ L+  HA+ NA  +   + L  +A        
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 141
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + LL              TPL +AA  GS E  K LL   A+ ++TD   + P  +A  R
Sbjct: 142 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 201
Query: 264 GNREAVEIL 272
            + + V +L
Sbjct: 202 MHHDIVRLL 210

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 3/189 (1%)
Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
           D  GET L  AAR   ++ AK L E  A+  I  N+G T LH +       +   L+ ++
Sbjct: 54  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
             ++D+   D  TPLI AA    +  ++ L+  HA+ NA  +   + L  +A        
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + LL              TPL +AA  GS E  K LL   A+ ++TD   + P  +A  R
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
Query: 264 GNREAVEIL 272
            + + V +L
Sbjct: 234 MHHDIVRLL 242

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 3/189 (1%)
Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
           D  GET L  AAR   ++ AK L E  A+  I  N+G T LH +       +   L+ ++
Sbjct: 55  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
             ++D+   D  TPLI AA    +  ++ L+  HA+ NA  +   + L  +A        
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 174
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + LL              TPL +AA  GS E  K LL   A+ ++TD   + P  +A  R
Sbjct: 175 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 234
Query: 264 GNREAVEIL 272
            + + V +L
Sbjct: 235 MHHDIVRLL 243

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 14/194 (7%)
Query: 80  KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELL 139
           KL+    D++    +  AAR+G T+  + L E G +PTI +  G TALH +   G ++  
Sbjct: 10  KLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTA 69
Query: 140 TYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            YL S G EV S      P+  A    + + V  L+E         E  +          
Sbjct: 70  KYLASVG-EVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLN--------- 119
Query: 200 SLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGST--EIIKCLLKAGADPNVTDEDGQKPI 257
              C +  +             T LH    +G    E IK L++ GA P   D+  + P+
Sbjct: 120 --ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPL 177
Query: 258 QVAAARGNREAVEI 271
             A    NREA+++
Sbjct: 178 XRAXEFRNREALDL 191

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           A+I+D   R  LH A       V + L+     D+D +  DG TPL+ AAR       + 
Sbjct: 83  ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 142
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA-GTPLIWAAGHGQ 167
           L    A+     +LG +ALH +A + N++    LL  GA  D +++   TPL  AA  G 
Sbjct: 143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 202
Query: 168 QEAVKVLLEHHAN 180
            E  KVLL+H AN
Sbjct: 203 YETAKVLLDHFAN 215

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
           D  G T L  AA    ++ AK L E  A+  I  N+G T LH +       +   L+ ++
Sbjct: 54  DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
             ++D+   D  TPLI AA    +  ++ L+  HA+ NA  +   + L  +A        
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + LL              TPL +AA  GS E  K LL   A+ ++TD   + P  +A  R
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
Query: 264 GNREAVEIL 272
            + + V +L
Sbjct: 234 MHHDIVRLL 242

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 30/218 (13%)
Query: 58  GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPT 117
           GAL  AA +  T   K +L++    VD  D +G TPL  A      E AK L + GA+  
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 118 IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESD--AGTPLIWAAGHGQQEAVKVLL 175
           + +++  +   ++   G  E+L Y+L       ++ +   G  LI AA  G  + VK+LL
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 176 EH-HANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTE 234
           E    + + + +   T L+ AV    L   + L Q                        +
Sbjct: 127 EDGREDIDFQNDFGYTALIEAVG---LREGNQLYQ------------------------D 159
Query: 235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           I+K L++ GAD ++ D  G+  +  A  +G  E  +IL
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 33/190 (17%)
Query: 84  DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
           + +D    TPL+ A   G       L E+          G+TAL  +     + +   LL
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 144 SKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT 202
           SKG+ V+++  +G TPL+W+   G  E    LLEH AN N    +  TPL+         
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLI--------- 139
Query: 203 CLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262
                                  +A+  G +EI+K LL+ GAD +  D  G      A  
Sbjct: 140 -----------------------VASKYGRSEIVKKLLELGADISARDLTGLTAEASARI 176
Query: 263 RGNREAVEIL 272
            G +E ++I 
Sbjct: 177 FGRQEVIKIF 186

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 34  AKQLDDQGKGLSKTVADIKDANK---RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDG 90
           AK L ++G  +    A  KD+ K   R ALH+AA+     + KYL+ E   + D QDEDG
Sbjct: 254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDG 313
Query: 91  ETPLLHAARQGHTETAKYLFEHGA 114
           +TP+  AA++G  E   YL + GA
Sbjct: 314 KTPIXLAAQEGRIEVVXYLIQQGA 337

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 32/200 (16%)
Query: 82  DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
           DV+  D D  TPL  A          YL + GA+PTI +    +ALH +A   +     Y
Sbjct: 158 DVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVY 217
Query: 142 LLS----KGAEVDSESDAGTPLIWAA---GHGQQEAVKVLLEHHANPNAETEDNITPLLS 194
            L+    KG   + + +  T L   A   G  Q  + K+L+E  A  + +          
Sbjct: 218 XLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDG--------- 268
Query: 195 AVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLL-KAGADPNVTDEDG 253
                                      T LH AA + +  I+K L+ + G++ +  DEDG
Sbjct: 269 ---------------AARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDG 313
Query: 254 QKPIQVAAARGNREAVEILF 273
           + PI +AA  G  E V  L 
Sbjct: 314 KTPIXLAAQEGRIEVVXYLI 333

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 32/119 (26%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           D G  L+ AA  GQ + V++L+ + A+ NA+ +D  TPL                     
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPL--------------------- 39
Query: 214 XXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                      H+AA  G  EI++ LLKAGAD N  D+ G+    ++   GN +  EIL
Sbjct: 40  -----------HLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 67  GKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA 126
           G T +   LL++     + QD  G +P+  AAR G  +T K L EHGA+  +P   GA  
Sbjct: 52  GSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 110
Query: 127 LHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANP 181
           +H +   G+  ++++L ++      ++   TPL  A   G Q+ V +L  H   P
Sbjct: 111 IHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 152 ESDAGTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQX 210
           E  AG  L  AA  G  + V+ LL     +P+A      T L   +   +   L+LL Q 
Sbjct: 5   EVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQG 64
Query: 211 XXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
                      +P+H AA  G  + +K L++ GAD NV D  G  PI +A   G+   V 
Sbjct: 65  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 124
Query: 271 IL 272
            L
Sbjct: 125 FL 126

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           AAR G+ D  + L+        T D  G +PL  AA+ GH  T + L   G +    + +
Sbjct: 9   AARAGQDDEVRILMANGA--PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
             T LH +A  G+  ++  LL  GA+V+++     T L WA  H  QE V++L+++ A+ 
Sbjct: 67  DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 182 NAETE 186
           + +++
Sbjct: 127 HTQSK 131

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNI--TPLLSAVAAGSLTCLDLLIQX- 210
           D G  L+ AA  GQ + V++L+   AN    T D +  +PL  A   G  +  ++L++  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILM---ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Query: 211 XXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
                      TPLH+AA  G   I++ LLK GAD N  D      +  A    ++E VE
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 271 ILF 273
           +L 
Sbjct: 118 LLI 120

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 67  GKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA 126
           G T +   LL++     + QD  G +P+  AAR G  +T K L EHGA+  +P   GA  
Sbjct: 46  GSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 127 LHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEH 177
           +H +   G+  ++++L ++      ++   TPL  A   G Q+ V +L  H
Sbjct: 105 IHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 155 AGTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           AG  L  AA  G  + V+ LL     +P+A      T L   +   +   L+LL Q    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61
Query: 214 XXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                   +P+H AA  G  + +K L++ GAD NV D  G  PI +A   G+   V  L
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 82  DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
           D+D +  DG TPL+ AAR       + L    A+     +LG +ALH +A + N++    
Sbjct: 7   DLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 66
Query: 142 LLSKGAEVDSESDA-GTPLIWAAGHGQQEAVKVLLEHHAN 180
           LL  GA  D +++   TPL  AA  G  E  KVLL+H AN
Sbjct: 67  LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 106

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 32/120 (26%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+  A+ ++           GS            
Sbjct: 4   SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN-----------GS------------ 40
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  E++K LL+AGAD N  D+ G+    ++   GN +  EIL
Sbjct: 41  ---------TPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEE-LKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           D  D +     H A   G  +V K L +  LK D++     G T L  A  +   E +++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYL--LSKGAEVDSESDAGTPLIWAAGHG 166
           L E+GA+  I        LH +A +G+++L+  L  L K A    +    TPL  A   G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 167 QQEAVKVLLEHHA-------NPNAETED 187
             +A  +L+E +        N  A+ ED
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAED 213

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 9/184 (4%)
Query: 86  QDEDGETPLLHAARQGHTETAKYLFEHGANPTI---PSNLGATALHHSAGIGNIELLTYL 142
           +D+DG  PL  +      E   +L     N  +   P + G T  H +  +GN+E++  L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 143 LSKGAEVDSE---SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
             +  + D     +   T L  A G    E  + L+E+ A+   + + N  PL  A + G
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 200 SLTCLDLL--IQXXXXXXXXXXXXTPL-HIAADIGSTEIIKCLLKAGADPNVTDEDGQKP 256
           SL  ++LL  +             TPL H  A+      +  + K GA+ ++ D  G K 
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Query: 257 IQVA 260
             VA
Sbjct: 212 EDVA 215

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEE-LKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           D  D +     H A   G  +V K L +  LK D++     G T L  A  +   E +++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYL--LSKGAEVDSESDAGTPLIWAAGHG 166
           L E+GA+  I        LH +A +G+++L+  L  L K A    +    TPL  A   G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 167 QQEAVKVLLEHHA-------NPNAETED 187
             +A  +L+E +        N  A+ ED
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAED 213

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 9/184 (4%)
Query: 86  QDEDGETPLLHAARQGHTETAKYLFEHGANPTI---PSNLGATALHHSAGIGNIELLTYL 142
           +D+DG  PL  +      E   +L     N  +   P + G T  H +  +GN+E++  L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 143 LSKGAEVDSE---SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
             +  + D     +   T L  A G    E  + L+E+ A+   + + N  PL  A + G
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 200 SLTCLDLL--IQXXXXXXXXXXXXTPL-HIAADIGSTEIIKCLLKAGADPNVTDEDGQKP 256
           SL  ++LL  +             TPL H  A+      +  + K GA+ ++ D  G K 
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Query: 257 IQVA 260
             VA
Sbjct: 212 EDVA 215

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEE-LKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           D  D +     H A   G  +V K L +  LK D++     G T L  A  +   E +++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYL--LSKGAEVDSESDAGTPLIWAAGHG 166
           L E+GA+  I        LH +A +G+++L+  L  L K A    +    TPL  A   G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 167 QQEAVKVLLEHHA-------NPNAETED 187
             +A  +L+E +        N  A+ ED
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAED 213

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 9/184 (4%)
Query: 86  QDEDGETPLLHAARQGHTETAKYLFEHGANPTI---PSNLGATALHHSAGIGNIELLTYL 142
           +D+DG  PL  +      E   +L     N  +   P + G T  H +  +GN+E++  L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 143 LSKGAEVDSE---SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
             +  + D     +   T L  A G    E  + L+E+ A+   + + N  PL  A + G
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 200 SLTCLDLL--IQXXXXXXXXXXXXTPL-HIAADIGSTEIIKCLLKAGADPNVTDEDGQKP 256
           SL  ++LL  +             TPL H  A+      +  + K GA+ ++ D  G K 
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Query: 257 IQVA 260
             VA
Sbjct: 212 EDVA 215

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D+KD      +H AAR G+ D  + LLE  + DV+ +D +G  PL  AA++GH    ++L
Sbjct: 64  DLKDRTGFAVIHDAARAGQLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGANPTIPSN-LGATALHHSAGIGNIELLTYLLSKGA 147
            +H A+     N  G TA   +   G  E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           AAR G+ D  + L+     DV  +D++G TPL  AAR GH E  K L E GA+       
Sbjct: 31  AARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Query: 123 GATALHHSAGIGNIELLTYL 142
           G TA   S   GN +L   L
Sbjct: 90  GKTAFDISIDNGNEDLAEIL 109

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 32/120 (26%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+  A+ ++                         
Sbjct: 22  SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG------------------------ 57
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  E++K LL+AGAD    D+ G+    ++   GN +  EIL
Sbjct: 58  --------STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 94/214 (43%), Gaps = 10/214 (4%)
Query: 60  LHFAAREGKTDVCKYLLEELK---LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP 116
           LH A  +G       L+   +    ++D  +   +TPL  A         + L   GA+P
Sbjct: 13  LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72
Query: 117 TIPSNLGATALHHSAGIGNIELLTYLLSKGA--EVDSES---DAGTPLIWAAGHGQQEAV 171
                 G TA H +    +   L  LL   A   +D E+   D  T L  A     QE V
Sbjct: 73  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 132
Query: 172 KVLLEHHANPNA-ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXX-XTPLHIAAD 229
           ++LLE  A+ +A + +   +PL+ AV   SL+ + LL+Q             + LH A+ 
Sbjct: 133 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 192
Query: 230 IGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
            G   +++ L+++GAD ++ +     P+ VA +R
Sbjct: 193 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           ++ EG+ D+ + ++ E+  D    +++G T L +A   GHTE  K+L + G N     + 
Sbjct: 44  SSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEV 149
           G T LH +A   N+++  +L+  GA V
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAV 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           ++ EG+ D+ + ++ E+  D    +++G T L +A   GHTE  K+L + G N     + 
Sbjct: 44  SSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEV 149
           G T LH +A   N+++  +L+  GA V
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAV 129

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +DN TPL+ A AA SL   + L+Q              PLH A  +G T +    LK GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEIL 272
           D    D +G+ P+ +A    N + V +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D+KD      +H AAR G  D  + LLE  + DV+ +D +G  PL  AA++GH    ++L
Sbjct: 64  DLKDRTGNAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGANPTIPSN-LGATALHHSAGIGNIELLTYLLSKGA 147
            +H A+     N  G TA   +   G  E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +DN TPL+ A AA SL   + L+Q              PLH A  +G T +    LK GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEIL 272
           D    D +G+ P+ +A    N + V +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +DN TPL+ A AA SL   + L+Q              PLH A  +G T +    LK GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEIL 272
           D    D +G+ P+ +A    N + V +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D+KD      +H AAR G  D  + LLE  + DV+ +D +G  PL  AA++GH    ++L
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGANPTIPSN-LGATALHHSAGIGNIELLTYLLSKGA 147
            +H A+     N  G TA   +   G  E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D+KD      +H AAR G  D  + LLE  + DV+ +D +G  PL  AA++GH    ++L
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGANPTIPSN-LGATALHHSAGIGNIELLTYLLSKGA 147
            +H A+     N  G TA   +   G  E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
           G+++ +   ++KG +V+   + G  PL +AA  GQ E ++ LL   A+ NA  + +ITPL
Sbjct: 13  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 193 LSAVAAGSLTCLDLLI 208
           LSAV  G ++C+ LL+
Sbjct: 73  LSAVYEGHVSCVKLLL 88

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
           G+++ +   ++KG +V+   + G  PL +AA  GQ E ++ LL   A+ NA  + +ITPL
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 193 LSAVAAGSLTCLDLLI 208
           LSAV  G ++C+ LL+
Sbjct: 78  LSAVYEGHVSCVKLLL 93

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D+KD      +H AAR G  D  + LLE  + DV+ +D +G  PL  AA++GH    ++L
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEN-QADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGANPTIPSN-LGATALHHSAGIGNIELLTYLLSKGA 147
            +H A+     N  G TA   +   G  E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPL 224
           G   +V+ LL++ ++PN +     TPL  A   G L  ++LL+Q             +PL
Sbjct: 21  GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPL 80
Query: 225 HIAADIGSTEIIKCLLKAGADPNVTDEDGQKPI 257
           H AA  G  +I+K LL  GA  N  +  G +P+
Sbjct: 81  HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           T LHIA+  G    ++ LL+ G+DPNV D  G  P+  A   G+ + VE+L 
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Query: 146 GAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCL 204
           G+ +  E   G  L  AA  G  + V+ LL     +P+A      T L   +       L
Sbjct: 1   GSMLLEEVCVGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVAL 60
Query: 205 DLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
           +LL Q            +P+H AA  G  + +K L++ GAD N  D  G  PI +A   G
Sbjct: 61  ELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 120
Query: 265 NREAVEILFP 274
           +   V  L P
Sbjct: 121 HSSVVSFLAP 130

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 64  AREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
            REG     +  L+  + D++  D+ G +PL  A R+G +   + L   GA   + +   
Sbjct: 8   CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAGT-PLIWAAGHGQQEAVKVLLEHHA 179
            T LH +A  G+ +++  LL   A++++ ++ G  PL +A   GQ +  + L+ + A
Sbjct: 68  DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 166 GQQEAVKVLLEHHANPNAETEDN-ITPLLSAVAAGSLTCLDLLI-QXXXXXXXXXXXXTP 223
           G   AV++ L++  N   + +D+  +PL  A   G    +++LI +            TP
Sbjct: 11  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           LH+AA  G  +I++ LL+  AD N  +E G  P+  A   G  +  E L
Sbjct: 71  LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 119

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 156 GTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXX 214
           G  L  AA  G  + V+ LL     +P+A      T L   +       L+LL Q     
Sbjct: 9   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPN 68
Query: 215 XXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFP 274
                  +P+H AA  G  + +K L++ GAD N  D  G  PI +A   G+   V  L P
Sbjct: 69  VQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 64  AREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
            REG     +  L+  + D++  D+ G +PL  A R+G +   + L   GA   + +   
Sbjct: 13  CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAGT-PLIWAAGHGQQEAVKVLLEHHA 179
            T LH +A  G+ +++  LL   A++++ ++ G  PL +A   GQ +  + L+ + A
Sbjct: 73  DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 166 GQQEAVKVLLEHHANPNAETEDN-ITPLLSAVAAGSLTCLDLLI-QXXXXXXXXXXXXTP 223
           G   AV++ L++  N   + +D+  +PL  A   G    +++LI +            TP
Sbjct: 16  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           LH+AA  G  +I++ LL+  AD N  +E G  P+  A   G  +  E L
Sbjct: 76  LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 151 SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQX 210
             SDAG  L  AA  GQ E V+ LLE  A+PNA       P+   +   +     LL+  
Sbjct: 10  GSSDAG--LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHG 67
Query: 211 XXXXXXXXXXXT-PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
                      T P+H AA  G  + +  L +AGA  +V D  G+ P+ +A  +G+R+  
Sbjct: 68  AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIA 127
Query: 270 EILFPLTSE 278
             L   T +
Sbjct: 128 RYLHAATGD 136

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           LH AA+ G     +  L+  ++ V+  D+ G T L  A   GH +  + LF     P I 
Sbjct: 77  LHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ---PNIE 132
Query: 120 SN----LGATALHHSAGIGNIELLTYLLSKGAEVD 150
            N    LG TALH +A  G  +++  LL+KGA  D
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           AAR+        LLE+   DVD  DE+G T LL  A  G  +  + L E GA+       
Sbjct: 51  AARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 108
Query: 123 GA-TALHHSAGIGNIELLTYLLSKGAEVDSESDAG 156
           G  TALH +AG    E++  L+  GA+++ E + G
Sbjct: 109 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERG 143

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 129 HSAGIGNIELL---------TYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA 179
            +AG G +E L         +++ S     D  S+  TP   AA    ++A+  LLE   
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDR- 67
Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXX--XXXXXXXTPLHIAADIGSTEIIK 237
           + +A  E+  T LL     GS  C+ LL +              T LH+AA     E+++
Sbjct: 68  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 238 CLLKAGADPNVTDEDGQKPIQVA 260
            L++ GAD  V DE G   +++A
Sbjct: 128 ALVELGADIEVEDERGLTALELA 150

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 9/169 (5%)
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
           +NL  T LH +      E+   LL  G + +     G TPL  A   G   +V VL +  
Sbjct: 42  NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 101
Query: 179 ANPN------AETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXX--XXXTPLHIAADI 230
             P+      A   +  T L  A   G L  ++LL+               T LH+A D+
Sbjct: 102 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED 279
            + +++  LLK GAD N     G  P Q+   R +    + L  LT E+
Sbjct: 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           AAR+        LLE+   DVD  DE+G T LL  A  G  +  + L E GA+       
Sbjct: 52  AARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 109
Query: 123 GA-TALHHSAGIGNIELLTYLLSKGAEVDSESDAG 156
           G  TALH +AG    E++  L+  GA+++ E + G
Sbjct: 110 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERG 144

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 129 HSAGIGNIELL---------TYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA 179
            +AG G +E L         +++ S     D  S+  TP   AA    ++A+  LLE   
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDR- 68
Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXX--XXXXXXXTPLHIAADIGSTEIIK 237
           + +A  E+  T LL     GS  C+ LL +              T LH+AA     E+++
Sbjct: 69  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 238 CLLKAGADPNVTDEDGQKPIQVA 260
            L++ GAD  V DE G   +++A
Sbjct: 129 ALVELGADIEVEDERGLTALELA 151

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 162 AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXX 221
           AA  G+ E V+ LLE  ANPNA       P+   +   +     LL+             
Sbjct: 19  AAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPATL 78
Query: 222 T-PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           T P+H AA  G  + +  L +AGA  +V D  G+ P+ +A   G+R+    L
Sbjct: 79  TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 9/169 (5%)
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
           +NL  T LH +      E+   LL  G + +     G TPL  A   G   +V VL +  
Sbjct: 39  NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 98
Query: 179 ANPN------AETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX--XXXXTPLHIAADI 230
             P+      A   +  T L  A   G L  ++LL+               T LH+A D+
Sbjct: 99  TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 158
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED 279
            + +++  LLK GAD N     G  P Q+   R +    + L  LT E+
Sbjct: 159 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-73
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-71
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-70
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-69
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-63
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-51
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-29
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-69
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-55
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-55
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-68
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-65
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-53
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-52
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-42
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-67
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-59
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-56
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-50
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-67
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-60
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-57
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-65
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-55
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-48
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-63
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-60
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-54
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-62
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-55
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-43
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-61
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-53
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-52
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-49
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-60
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-59
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-45
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-60
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-55
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-45
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-42
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-59
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-56
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-56
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-47
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-58
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-51
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-51
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-45
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-34
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-58
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-55
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-58
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-52
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-52
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-48
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-28
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-57
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-47
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-40
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-39
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-54
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-52
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-53
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-44
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-43
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-52
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-41
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-35
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-51
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-43
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-13
2rfa_A	232	Transient receptor potential cation channel subfa	2e-50
2rfa_A	232	Transient receptor potential cation channel subfa	2e-33
2rfa_A	232	Transient receptor potential cation channel subfa	2e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-50
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-44
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-49
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-48
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-42
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-30
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-49
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-47
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-38
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-31
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-49
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-45
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-42
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-48
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-48
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-37
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-48
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-43
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-40
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-40
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-35
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-46
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-43
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-37
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-45
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-39
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-33
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-44
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-38
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-32
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-43
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-43
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-43
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-41
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-34
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-30
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-42
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-34
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-30
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-42
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-39
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-34
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-40
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-40
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-38
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-40
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-30
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-39
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-37
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-34
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-04
2etb_A	256	Transient receptor potential cation channel subfam	2e-37
2etb_A	256	Transient receptor potential cation channel subfam	1e-28
2etb_A	256	Transient receptor potential cation channel subfam	1e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-37
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-37
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-32
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-27
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-36
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-35
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-34
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-34
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-24
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	3e-34
2pnn_A	273	Transient receptor potential cation channel subfa	1e-30
2pnn_A	273	Transient receptor potential cation channel subfa	5e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-33
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-32
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-32
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-32
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-32
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-31
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-27
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-24
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-27
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-25
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-25
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-16
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-19
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-14
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-14
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-18
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-18
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	9e-06
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-05
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-05
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-05
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	5e-05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	7e-05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	5e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	7e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	8e-04
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	8e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  232 bits (595), Expect = 6e-73
 Identities = 84/266 (31%), Positives = 121/266 (45%), Gaps = 16/266 (6%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G +     +A+ L ++        A    A K G   LH A      D+ K LL  
Sbjct: 153 AAKYGKVR----VAELLLERD-------AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
                 +   +G TPL  AA+Q   E A+ L ++G +    S  G T LH +A  G+ E+
Sbjct: 202 -GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM 260

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
           +  LLSK A  +  + +G TPL   A  G      VL++H    +A T    TPL  A  
Sbjct: 261 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH 320

Query: 198 AGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP 256
            G++  +  L+Q  A+ N     G +PLH AA  G T+I+  LLK GA PN    DG  P
Sbjct: 321 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP 380

Query: 257 IQVAAARGNREAVEILFPLTSEDPSI 282
           + +A   G     ++L  +T E   +
Sbjct: 381 LAIAKRLGYISVTDVLKVVTDETSFV 406

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  228 bits (583), Expect = 4e-71
 Identities = 95/256 (37%), Positives = 134/256 (52%), Gaps = 16/256 (6%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           A+  G+L     I K L  +G       A    +N +    LH AAR G T+V KYLL+ 
Sbjct: 21  ASFMGHLP----IVKNLLQRG-------ASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 69

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
            K  V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E 
Sbjct: 70  -KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVET 128

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
           +  LL K A     +  G TPL  AA +G+    ++LLE  A+PNA  ++ +TPL  AV 
Sbjct: 129 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH 188

Query: 198 AGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP 256
             +L  + LL+  G + +  A  G TPLHIAA     E+ + LL+ G   N     G  P
Sbjct: 189 HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP 248

Query: 257 IQVAAARGNREAVEIL 272
           + +AA  G+ E V +L
Sbjct: 249 LHLAAQEGHAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  226 bits (580), Expect = 1e-70
 Identities = 80/256 (31%), Positives = 120/256 (46%), Gaps = 16/256 (6%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+++        L ++        A      K+G   LH AA+ GK  V + LLE 
Sbjct: 120 AAREGHVE----TVLALLEKE-------ASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
                +   ++G TPL  A    + +  K L   G +P  P+  G T LH +A    +E+
Sbjct: 169 -DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV 227

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
              LL  G   ++ES  G TPL  AA  G  E V +LL   AN N   +  +TPL     
Sbjct: 228 ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ 287

Query: 198 AGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP 256
            G +   D+LI+ G   +     G TPLH+A+  G+ +++K LL+  AD N   + G  P
Sbjct: 288 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSP 347

Query: 257 IQVAAARGNREAVEIL 272
           +  AA +G+ + V +L
Sbjct: 348 LHQAAQQGHTDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  222 bits (569), Expect = 5e-69
 Identities = 74/228 (32%), Positives = 105/228 (46%), Gaps = 5/228 (2%)

Query: 49  ADI--KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA 106
                   +    LH A+  G   + K LL+      +  +   ETPL  AAR GHTE A
Sbjct: 5   ISGGGGGESGLTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 107 KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGH 165
           KYL ++ A     +    T LH +A IG+  ++  LL   A  +  + AG TPL  AA  
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123

Query: 166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPL 224
           G  E V  LLE  A+    T+   TPL  A   G +   +LL++  A+ N     G TPL
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPL 183

Query: 225 HIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           H+A    + +I+K LL  G  P+    +G  P+ +AA +   E    L
Sbjct: 184 HVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  208 bits (531), Expect = 2e-63
 Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 19/247 (7%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           A    NLD    I K L  +G                G   LH AA++ + +V + LL+ 
Sbjct: 186 AVHHNNLD----IVKLLLPRG-------GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
                + +   G TPL  AA++GH E    L    AN  + +  G T LH  A  G++ +
Sbjct: 235 -GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV 293

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
              L+  G  VD+ +  G TPL  A+ +G  + VK LL+H A+ NA+T+   +PL  A  
Sbjct: 294 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 353

Query: 198 AGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCL---LKAGADPNVTDEDG 253
            G    + LL++ GA+ N V + G TPL IA  +G   +   L       +   V+D+  
Sbjct: 354 QGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHR 413

Query: 254 QKPIQVA 260
               +  
Sbjct: 414 MSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  177 bits (451), Expect = 1e-51
 Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 28/234 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA    ++    +A+ L   G             + +G   LH AA+EG  ++   LL +
Sbjct: 219 AAKQNQVE----VARSLLQYG-------GSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
            + + +  ++ G TPL   A++GH   A  L +HG      + +G T LH ++  GNI+L
Sbjct: 268 -QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL 326

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
           + +LL   A+V++++  G +PL  AA  G  + V +LL++ A+PN  + D  TPL  A  
Sbjct: 327 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 386

Query: 198 AGSLTCLDLLIQAGANANIV----AGGATPLHIAADIGSTEIIKCLLKAGADPN 247
            G ++  D+L       + V        +                +L    D  
Sbjct: 387 LGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV---------DEILDVSEDEG 431

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  159 bits (406), Expect = 4e-45
 Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 2/163 (1%)

Query: 112 HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA 170
            G +       G T LH ++ +G++ ++  LL +GA  +  +    TPL  AA  G  E 
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA-GGATPLHIAAD 229
            K LL++ A  NA+ +D+ TPL  A   G    + LL++  AN N+    G TPLHIAA 
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 230 IGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            G  E +  LL+  A      + G  P+ VAA  G     E+L
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (290), Expect = 8e-29
 Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 25/170 (14%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
            A  G++     +A  L   G         +    + G   LH A+  G   + K+LL+ 
Sbjct: 285 VAQEGHVP----VADVLIKHG-------VMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 333

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN--- 135
            + DV+ + + G +PL  AA+QGHT+    L ++GA+P   S+ G T L  +  +G    
Sbjct: 334 -QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISV 392

Query: 136 IELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAET 185
            ++L  +  + + V                   E V  +L+   +   E 
Sbjct: 393 TDVLKVVTDETSFVLVSDKHR--------MSFPETVDEILDVSEDEGEEL 434

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  218 bits (558), Expect = 3e-69
 Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 1/226 (0%)

Query: 44  LSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT 103
           L          +    +H AA  G     + L+ +    V+    D  +PL  A   GH 
Sbjct: 47  LLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHL 105

Query: 104 ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAA 163
              K L +HGA     +    T L ++   G+ + +  LL  GA V  ESD  +P+  AA
Sbjct: 106 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA 165

Query: 164 GHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATP 223
             G  E V  L+ +  N + +     TPL  A       C+  L+++GA+ N   G  +P
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSP 225

Query: 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
           LH      S E+   L+  GAD    + +G++P+++         +
Sbjct: 226 LHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  183 bits (467), Expect = 1e-55
 Identities = 56/255 (21%), Positives = 102/255 (40%), Gaps = 18/255 (7%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANK-RGALHFAAREGKTDVCKYLLEEL 79
            +   +       +  L  +G       + +   +  +G +  +   G  D     L  L
Sbjct: 2   GSSHHHHH----HSSGLVPRG-------SHMASMDGKQGGMDGSKPAGPRDFPGIRL--L 48

Query: 80  KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELL 139
              +        +P+  AA  GH  + + L   G    I +    + LH +   G++  +
Sbjct: 49  SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCV 108

Query: 140 TYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA 198
             LL  GA+V+  +    TPL  A   G  + V +LL+H A+   E++   +P+  A   
Sbjct: 109 KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARR 167

Query: 199 GSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPI 257
           G + C++ LI  G N +       TPL++A +      +K LL++GAD N   +    P+
Sbjct: 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPL 226

Query: 258 QVAAARGNREAVEIL 272
                  + E   +L
Sbjct: 227 HAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  181 bits (461), Expect = 8e-55
 Identities = 59/233 (25%), Positives = 91/233 (39%), Gaps = 19/233 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+        + L  QG         +          LH A   G     K LL+ 
Sbjct: 66  AAIHGHQL----SLRNLISQG-------WAVNIITADHVSPLHEACLGGHLSCVKILLKH 114

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
               V+    D  TPL +A   G  +    L +HGA+    S+  A+ +H +A  G++E 
Sbjct: 115 -GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVEC 172

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
           +  L++ G  +D +     TPL  A  + Q+  VK LLE  A+ N   +   +PL + V 
Sbjct: 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVR 231

Query: 198 AGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVT 249
             S     LL+  GA+     A G  P+ +         +  L + GA     
Sbjct: 232 TASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLPKP 283

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  212 bits (543), Expect = 1e-67
 Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 4/226 (1%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
            ++  NKR  LH AA  G  D+C  L++    ++DT  ED  TPL+ AA   H E  KYL
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAAGHGQ 167
            + GA        G+T LH +A  G+ E++ YLLS G  +V+ + D G TP+IWA  +  
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123

Query: 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHI 226
            + VK+LL   ++ N    +    L  A  +G +   ++L+ A  + + V   G +PLHI
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183

Query: 227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           AA     + +   L   +D  + +++G+ P+Q A+      +   +
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  192 bits (490), Expect = 1e-59
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 17/230 (7%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G++D    I   L   G       A+I   ++     L  AA     +  KYL++ 
Sbjct: 18  AAEAGHVD----ICHMLVQAG-------ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA-NPTIPSNLGATALHHSAGIGNIE 137
               VD +D +G T L  AA++GH E  +YL  +G  +     + G T +  +    +++
Sbjct: 67  -GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD 125

Query: 138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAV 196
           L+  LLSKG++++   +     L WAA  G  +  ++LL    + +A      +PL  A 
Sbjct: 126 LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185

Query: 197 AAGSLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGAD 245
                 C+ L +   ++  +    G TPL  A+          + KA  D
Sbjct: 186 RENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  184 bits (469), Expect = 1e-56
 Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 3/194 (1%)

Query: 82  DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
           +   + ++  +PL  AA  GH +    L + GAN    S    T L  +A   ++E + Y
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 142 LLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA-NPNAETEDNITPLLSAVAAG 199
           L+  GA VD +   G T L  AA  G  E V+ LL +   + N + +   TP++ A    
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122

Query: 200 SLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
            +  + LL+  G++ NI        LH AA  G  +I + LL A  D +  +  G  P+ 
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182

Query: 259 VAAARGNREAVEIL 272
           +AA     + V + 
Sbjct: 183 IAARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  167 bits (425), Expect = 6e-50
 Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 14/197 (7%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA   +L+      K L   G       A +   +  G   LH AA++G  +V +YLL  
Sbjct: 51  AAENNHLE----AVKYLIKAG-------ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN 99

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
            ++DV+ QD+ G TP++ A    H +  K L   G++  I  N     LH +A  G +++
Sbjct: 100 GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI 159

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
              LL+   ++ + +  G +PL  AA   + + V + L   ++   + ++  TPL  A  
Sbjct: 160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219

Query: 198 AGSLTCLDLLIQAGANA 214
              +     + +A  ++
Sbjct: 220 NSQVWSALQMSKALQDS 236

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 93.2 bits (233), Expect = 3e-22
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEII 236
           H N   E ++  +PL +A  AG +    +L+QAGAN +       TPL  AA+    E +
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           K L+KAGA  +  D +G   + +AA +G+ E V+ L
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  212 bits (542), Expect = 2e-67
 Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 6/228 (2%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
              D      +  A + G  + C+ L+E    DV   D++  T L  AA     +  KY 
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 110 FEHGANP-TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167
              GA    +  +L +T LH +   G++ ++  L+  GA+       G + +  AA  G 
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121

Query: 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAG-SLTCLDLLIQAGANANIV--AGGATPL 224
              V  L+    + +   ++ +TPL+ A     S+    LL+    + N+       T L
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181

Query: 225 HIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           H A   G+T +I  LL+AGA+ +  +  G+  + +A  R N   +  L
Sbjct: 182 HWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  192 bits (491), Expect = 8e-60
 Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 19/237 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           A   G  +      ++L + G        D++  +K     LH+AA   + D+ KY + +
Sbjct: 16  ATQYGIYE----RCRELVEAG-------YDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64

Query: 79  LKLDVDTQDED-GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
               VD    D   TPL  A RQGH      L ++GA+P++    G + +H +A  G+  
Sbjct: 65  -GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS 123

Query: 138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHG-QQEAVKVLLEHHANPNAETEDN-ITPLLS 194
           ++ YL++KG +VD     G TPL+WAA      +  ++LL  + + N   + +  T L  
Sbjct: 124 IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183

Query: 195 AVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD 250
           AV AG+ T + LL++AGAN +     G + L +A    +  +I  L +A       +
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  185 bits (472), Expect = 5e-57
 Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 5/195 (2%)

Query: 83  VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
           +   D+     ++ A + G  E  + L E G +   P     T LH +A    I+L+ Y 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 143 LSKGAEVDS-ESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS 200
           +SKGA VD    D   TPL WA   G    V  L+++ A+P+    +  + +  A   G 
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121

Query: 201 LTCLDLLIQAGANANIV-AGGATPLHIAADIG-STEIIKCLLKAGADPNVTDE-DGQKPI 257
            + +  LI  G + +++   G TPL  AA    S +  + LL      N+ D+      +
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181

Query: 258 QVAAARGNREAVEIL 272
             A   GN   + +L
Sbjct: 182 HWAVLAGNTTVISLL 196

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  206 bits (526), Expect = 5e-65
 Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 10/234 (4%)

Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKL---DVDTQDEDGETPLLHAARQGHTET 105
           A   D +    LH A  +G       L+   +    ++D  +   +TPL  A        
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 106 AKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-----TPLI 160
            + L   GA+P      G TA H +    +   L  LL   A    + +A      T L 
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 161 WAAGHGQQEAVKVLLEHHANPNA-ETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-A 218
            A     QE V++LLE  A+ +A + +   +PL+ AV   SL+ + LL+Q GAN N    
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181

Query: 219 GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            G++ LH A+  G   +++ L+++GAD ++ +     P+ VA +R   + +   
Sbjct: 182 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  179 bits (457), Expect = 9e-55
 Identities = 54/233 (23%), Positives = 91/233 (39%), Gaps = 17/233 (7%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           A   GNL  + ++       G        ++   N      LH A       V + L+  
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGG-------RELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA----NPTIPSNLGATALHHSAGIG 134
                   D  G+T    A         + L +  A    +    +  G TALH +    
Sbjct: 69  -GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127

Query: 135 NIELLTYLLSKGAEVDS--ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
             E +  LL +GA++D+       +PLI A  +     V++LL+H AN NA+     + L
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187

Query: 193 LSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGA 244
            SA   G L  +  L+++GA++++      TPL +A      +I++      A
Sbjct: 188 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  161 bits (410), Expect = 9e-48
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 18/200 (9%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE- 77
           A  T        + + L   G       A     ++ G  A H A         + LL+ 
Sbjct: 53  AVITTLPS----VVRLLVTAG-------ASPMALDRHGQTAAHLACEHRSPTCLRALLDS 101

Query: 78  --ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP-SNLGATALHHSAGIG 134
                LD++ ++ DG T L  A      ET + L E GA+        G + L H+    
Sbjct: 102 AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN 161

Query: 135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLL 193
           ++ ++  LL  GA V+++  +G + L  A+G G    V+ L+   A+ + +   N TPL+
Sbjct: 162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221

Query: 194 SAVAAGSLTCLDLLIQAGAN 213
            A +   +  L       A+
Sbjct: 222 VARSRRVIDILRGKATRPAS 241

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  201 bits (515), Expect = 8e-63
 Identities = 68/276 (24%), Positives = 119/276 (43%), Gaps = 33/276 (11%)

Query: 18  FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG---ALHFAAREGKTDVCKY 74
            + A    ++D    + +QL + G       A++    + G    LH A +  + D+ + 
Sbjct: 9   LIKAVQNEDVD----LVQQLLEGG-------ANVNFQEEEGGWTPLHNAVQMSREDIVEL 57

Query: 75  LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134
           LL     D   + ++G TP L AA  G  +  K     GA+       G TA   +A  G
Sbjct: 58  LLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116

Query: 135 NIELLTYLLSKGAEVDSESDAG-----------TPLIWAAGHGQQEAVKVLLEHH-ANPN 182
            ++ L +L  +GA V+                 T L+ AA  G  E +K+LL+   A+ N
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 183 AETEDNITPLLSAVAAGSLTCLD----LLIQAGANANIV-AGGATPLHIAADIGSTEIIK 237
           A        L+ A+ +   + ++    LL+  GA+ N+    G TPL +A +     +++
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236

Query: 238 CLL-KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            LL +   + N TD DG+  + +A     ++  E+L
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  194 bits (497), Expect = 4e-60
 Identities = 70/239 (29%), Positives = 108/239 (45%), Gaps = 21/239 (8%)

Query: 54  ANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDED-GETPLLHAARQGHTETAKYLF 110
           A       L  A +    D+ + LLE    +V+ Q+E+ G TPL +A +    +  + L 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 111 EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQE 169
            HGA+P +    GAT    +A  G+++LL   LSKGA+V+     G T  + AA +G+ +
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 170 AVKVLLEHHANPNAETEDNI----------TPLLSAVAAGSLTCLDLLI-QAGANANIV- 217
           A+K L +  AN N   +             T L+ A   G +  L +L+ + GA+ N   
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 218 AGGATPLHIAADIGST----EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             G   L  A           I   LL  GAD NV  E G+ P+ +A  + +   V+ L
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  179 bits (457), Expect = 3e-54
 Identities = 70/250 (28%), Positives = 99/250 (39%), Gaps = 32/250 (12%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLEE 78
           A      D    I + L   G       AD   +  N       AA  G   + K  L +
Sbjct: 46  AVQMSRED----IVELLLRHG-------ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGAN----------PTIPSNLGATALH 128
              DV+  D  G T  + AA  G  +  K+L++ GAN                 GATAL 
Sbjct: 95  -GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153

Query: 129 HSAGIGNIELLTYLLSK-GAEVDSESDAG-TPLIWAAGHGQQ----EAVKVLLEHHANPN 182
            +A  G++E+L  LL + GA+V++  + G   LI A              +LL+H A+ N
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 213

Query: 183 AETEDNITPLLSAVAAGSL-TCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLL 240
              E   TPL+ AV    L     LL Q     N     G T L +A ++   +I + L 
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 241 KAGADPNVTD 250
           K GA  +  D
Sbjct: 274 KRGASTDCGD 283

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  199 bits (508), Expect = 3e-62
 Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 16/239 (6%)

Query: 50  DIKDANKRGALHFAAREGKT-------------DVCKYLLEELKLDVDTQDEDGETPLLH 96
           +++  +    L  A+  G                V    + +     +  D  GET L  
Sbjct: 4   NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63

Query: 97  AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA-EVDSESDA 155
           AAR   ++ AK L E  A+  I  N+G T LH +       +   L+   A ++D+    
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 156 G-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA 214
           G TPLI AA    +  ++ L+  HA+ NA  +   + L  A A  ++    +L++ GAN 
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183

Query: 215 NIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           ++      TPL +AA  GS E  K LL   A+ ++TD   + P  +A  R + + V +L
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  180 bits (459), Expect = 7e-55
 Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 4/203 (1%)

Query: 48  VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK 107
           + +  D     ALH AAR  ++D  K LLE    D + QD  G TPL  A         +
Sbjct: 49  LHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQ 107

Query: 108 YLFEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGH 165
            L  + A +     + G T L  +A +    +L  L++  A+V++  D G + L WAA  
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167

Query: 166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPL 224
              +A  VLL++ AN + +     TPL  A   GS     +L+   AN +I       P 
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 227

Query: 225 HIAADIGSTEIIKCLLKAGADPN 247
            IA +    +I++ L       +
Sbjct: 228 DIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  149 bits (380), Expect = 4e-43
 Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 26/197 (13%)

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
           +DV+ +  DG TPL+ A+  G                     G    +         +++
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGG--------------------GLETGNSEEEEDAPAVIS 40

Query: 141 YLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA 198
             + +GA + +++D    T L  AA + + +A K LLE  A+ N +     TPL +AV+A
Sbjct: 41  DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 100

Query: 199 GSLTCLDLLIQAGANANIVAG---GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQK 255
            +     +LI+  A  ++ A    G TPL +AA +    +++ L+ + AD N  D+ G+ 
Sbjct: 101 DAQGVFQILIRNRA-TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 159

Query: 256 PIQVAAARGNREAVEIL 272
            +  AAA  N +A  +L
Sbjct: 160 ALHWAAAVNNVDAAVVL 176

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  201 bits (514), Expect = 1e-61
 Identities = 52/294 (17%), Positives = 89/294 (30%), Gaps = 53/294 (18%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE-- 78
           A   G +D     AK L   G             + +  +H A    KTD+   L+E   
Sbjct: 60  ACKFGCVD----TAKYLASVG-------EVHSLWHGQKPIHLAVMANKTDLVVALVEGAK 108

Query: 79  ------------------LKLDVDTQDEDGETPLLHAARQG--HTETAKYLFEHGANPTI 118
                              ++    +   G+T L      G  + E  K L + GA+PT 
Sbjct: 109 ERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168

Query: 119 PSNLGATALHHSAGIGNIELLTYLL-----SKGAEVDSESDAG-TPLIWAAGHGQQEAVK 172
                 T L  +    N E L  ++          +D  +  G + L WA     ++   
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM 228

Query: 173 VLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA-------------- 218
             +E   + N E  ++  PL  +V A  +     L+Q      I A              
Sbjct: 229 RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRV 288

Query: 219 GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                +  AAD    E+++ L +   +   +   G         +       + 
Sbjct: 289 VWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  179 bits (456), Expect = 4e-53
 Identities = 54/263 (20%), Positives = 91/263 (34%), Gaps = 37/263 (14%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G  D      ++L + G             N+ G  ALH A + G  D  KYL   
Sbjct: 27  AARKGQTD----EVRRLIETG-------VSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
                      G+ P+  A     T+    L E           G             E+
Sbjct: 76  ---GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDEREV 126

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAA--GHGQQEAVKVLLEHHANPNAETEDNITPLLSA 195
                        +   G T L W    G    E +K+L++  A+P A+ + + TPL+ A
Sbjct: 127 N------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRA 180

Query: 196 VAAGSLTCLDLLI-----QAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVT 249
           +   +   LDL++     ++    +     G + LH A  I   ++    ++ G D N+ 
Sbjct: 181 MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME 240

Query: 250 DEDGQKPIQVAAARGNREAVEIL 272
           D +   P+ ++         + L
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  176 bits (448), Expect = 7e-52
 Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 24/243 (9%)

Query: 40  QGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHA 97
            G        +   ++      +H AAR+G+TD  + L+E   +    Q+  G T L  A
Sbjct: 2   PGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLA 60

Query: 98  ARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGT 157
            + G  +TAKYL   G   ++    G   +H +      +L+  L+    E         
Sbjct: 61  CKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQ-----M 113

Query: 158 PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG--SLTCLDLLIQAGANAN 215
           P        ++E  +         + +     T L   V  G   L  + +L+Q GA+  
Sbjct: 114 PESLLNECDEREVNE------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167

Query: 216 IV-AGGATPLHIAADIGSTEIIKCLL-----KAGADPNVTDEDGQKPIQVAAARGNREAV 269
                  TPL  A +  + E +  ++     K+    +  ++ G   +  A      +  
Sbjct: 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227

Query: 270 EIL 272
              
Sbjct: 228 MRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  168 bits (428), Expect = 6e-49
 Identities = 32/247 (12%), Positives = 62/247 (25%), Gaps = 35/247 (14%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
               G   L  ++ K L   G       A     +K     L  A      +    +++ 
Sbjct: 145 CVGLGPEYL--EMIKILVQLG-------ASPTAKDKADETPLMRAMEFRNREALDLMMDT 195

Query: 79  LKL----DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134
           +       +D  ++ G + L  A      + A    E G +  +  N     L+ S    
Sbjct: 196 VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA 255

Query: 135 NIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLS 194
            + L   LL K      ++                       +      +    +  + +
Sbjct: 256 MVLLTKELLQKTDVFLIQACP-------------------YHNGTTVLPDRVVWLDFVPA 296

Query: 195 AVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDG 253
           A        L LL +           GA          +  + +  L   A         
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSR 356

Query: 254 QKPIQVA 260
            +   V+
Sbjct: 357 ARSSAVS 363

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  196 bits (500), Expect = 1e-60
 Identities = 58/269 (21%), Positives = 91/269 (33%), Gaps = 24/269 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A    +          L            D+++   + ALH AA  G+    + L     
Sbjct: 16  AVIHQHEP----FLDFLLGFSA--GHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-G 68

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI--------------PSNLGATA 126
             V   +  G T L  A R      A  L +   +                 P    A A
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 127 LHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAET 185
              S      E          ++++E+  G TPL  A  H   E V++L +  A+ N   
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 186 EDN-ITPLLSAVAAGSLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAG 243
                TPL  AV A + + L+LL++AGA+      GG TPL  A    +  + + L   G
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           A       D   P   + +  + +  +  
Sbjct: 249 APEPEDGGDKLSPCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  192 bits (491), Expect = 3e-59
 Identities = 61/244 (25%), Positives = 90/244 (36%), Gaps = 19/244 (7%)

Query: 48  VADIKDANKRGALHFAAREGKTDVCKYLLEE--LKLDVDTQDEDGETPLLHAARQGHTET 105
           V      +   ALH A          +LL        +D Q++ G+T L  AA  G   T
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 106 AKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--------- 156
            + L+  GA   +    G TALH +  +        LL        ++            
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 157 ------TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210
                    + +  + + E      +      AE  D  TPL  AV       + LL  A
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 211 GANANIVAG--GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREA 268
           GA+ N      G TPLH+A +  +  +++ LLKAGADP      G+ P+  A  R N   
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240

Query: 269 VEIL 272
             +L
Sbjct: 241 ARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  156 bits (398), Expect = 2e-45
 Identities = 49/239 (20%), Positives = 78/239 (32%), Gaps = 29/239 (12%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE- 77
           AA  G         ++L   G       A +  A + G  ALH A R         LL+ 
Sbjct: 52  AAILGEAS----TVEKLYAAG-------AGVLVAERGGHTALHLACRVRAHTCACVLLQP 100

Query: 78  -----------ELKLDVDTQDEDGETPLLHAARQ-GHTETAKYLFEHGANPTIPSNLGAT 125
                       L    D   +    P    ++     E      +        +  G T
Sbjct: 101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160

Query: 126 ALHHSAGIGNIELLTYLLSKGAEVDS-ESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
            LH +    + E++  L   GA+++  E   G TPL  A        +++LL+  A+P A
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220

Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLK 241
                 TPL SA+   +     LL   GA      G   +P   +     ++      +
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  114 bits (287), Expect = 2e-29
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 12/151 (7%)

Query: 31  KKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDE 88
            +   + +D           ++  N  G   LH A      ++ + L +    D++  + 
Sbjct: 138 NEEEPRDEDWR-------LQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-AGADLNKPEP 189

Query: 89  D-GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
             G TPL  A         + L + GA+PT     G T L  +    N  L   L + GA
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 148 EVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
               +     +P   +      +      E+
Sbjct: 250 PEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 91.1 bits (227), Expect = 4e-21
 Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 15/129 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANK-RGALHFAAREGKTDVCKYLLE 77
           A    + +    + + L D G       AD+   +    R  LH A       V + LL+
Sbjct: 165 AVIHKDAE----MVRLLRDAG-------ADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
               D   +   G TPL  A  + +   A+ L  HGA          +    S    + +
Sbjct: 214 A-GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSD 272

Query: 138 LLTYLLSKG 146
                    
Sbjct: 273 NRDEGDEYD 281

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  196 bits (500), Expect = 2e-60
 Identities = 42/243 (17%), Positives = 81/243 (33%), Gaps = 20/243 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A    N+     +   L + G       A          LH AA    T + K LL    
Sbjct: 38  AIADNNVR----LVCTLLNAG-------ALKNLLENEFPLHQAATLEDTKIVKILLFS-G 85

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG-ATALHHSAGIGNIELL 139
           LD    D+ G T L +A   G+ +T K   +           G  T+ +H+  + ++ ++
Sbjct: 86  LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV 145

Query: 140 TYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLL-SAVAA 198
           +Y LS+       +   + +     +G  + + +LL++  + N        P +  A+  
Sbjct: 146 SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN 205

Query: 199 GSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
             +  L  L +   N        +       +   EI K +++   +           I 
Sbjct: 206 KDIEMLQALFKYDINIY------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259

Query: 259 VAA 261
              
Sbjct: 260 KNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  181 bits (461), Expect = 9e-55
 Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 17/230 (7%)

Query: 49  ADI--KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA 106
            D    D +   A ++A  +    +   LL            + E PL  AA    T+  
Sbjct: 22  KDTFKADVHGHSASYYAIADNNVRLVCTLLNA---GALKNLLENEFPLHQAATLEDTKIV 78

Query: 107 KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIWAAG 164
           K L   G + +   + G TAL+++   GN++ +   + K   +      G  T    A  
Sbjct: 79  KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM 138

Query: 165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATP 223
                 V   L    +   +    ++ +   +  G +  + LL+    + N        P
Sbjct: 139 LNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP 197

Query: 224 -LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            + +A D    E+++ L K   +    + +            + E  +++
Sbjct: 198 DIKLAIDNKDIEMLQALFKYDINIYSANLE-------NVLLDDAEIAKMI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  155 bits (395), Expect = 4e-45
 Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 5/180 (2%)

Query: 95  LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESD 154
           L       ++  K       +       G +A +++    N+ L+  LL+ GA  +   +
Sbjct: 4   LSRINTWKSKQLKSF-LSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN-LLE 61

Query: 155 AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA 214
              PL  AA     + VK+LL    + +   +   T L  AV +G++  + L ++     
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 215 NIVA--GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                 G  T  + A  +    I+   L                I +    G+ + + +L
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILL 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  148 bits (377), Expect = 2e-42
 Identities = 32/231 (13%), Positives = 69/231 (29%), Gaps = 26/231 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA   +      I K L   G        D    + +G  AL++A   G     K  +++
Sbjct: 69  AATLEDTK----IVKILLFSG-------LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 117

Query: 79  LKLDVDTQDEDG-ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
               +    + G +T   HA          Y      +      +  + +H +   G+++
Sbjct: 118 -NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-FDLAILLSCIHITIKNGHVD 175

Query: 138 LLTYLLSKGAEVDSESDAG-TPLI-WAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSA 195
           ++  LL      ++ +     P I  A  +   E ++ L ++  N         +  L  
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLEN 228

Query: 196 VAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGAD 245
           V         ++I+        +      +     +         L+    
Sbjct: 229 VLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  194 bits (495), Expect = 1e-59
 Identities = 72/258 (27%), Positives = 107/258 (41%), Gaps = 20/258 (7%)

Query: 18  FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYL 75
           FL A  +G+ +       +L ++G       ADI  AN  G  ALH A  +   D+ K+L
Sbjct: 44  FLAACSSGDTE----EVLRLLERG-------ADINYANVDGLTALHQACIDDNVDMVKFL 92

Query: 76  LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
           +E    +++  D +G  PL  AA  G+ + A+YL   GA+    ++ G T L  +     
Sbjct: 93  VEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM 151

Query: 136 IELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSA 195
            ELL   +++        D             ++A + L   H N     +   T L  A
Sbjct: 152 EELLQNEVNRQGV-----DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVA 206

Query: 196 VAAGSLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ 254
            A G    L LLIQA  + NI    G TPLH AA  G  E  + L++   D    ++ GQ
Sbjct: 207 AAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266

Query: 255 KPIQVAAARGNREAVEIL 272
               VA         E+ 
Sbjct: 267 TAFDVADEDILGYLEELQ 284

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  185 bits (473), Expect = 2e-56
 Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
            + DA ++         G     +  + + +     + +DG    L A   G TE    L
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVK-RKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168
            E GA+    +  G TALH +    N++++ +L+  GA ++   + G  PL  AA  G  
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119

Query: 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI-QAGANANIVAGGATPLHIA 227
           +  + L+   A+  A   +  TPL  A        L   + + G +              
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE------AARKEE 173

Query: 228 ADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             I   +  + L     +     + G   + VAAA+G  E +++L
Sbjct: 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  185 bits (472), Expect = 3e-56
 Identities = 69/246 (28%), Positives = 103/246 (41%), Gaps = 19/246 (7%)

Query: 31  KKIAKQLDDQGKGLSKTVADIKDANKRG-ALHFAAREGKTDVCKYLLEELKLDVDTQDED 89
           +   +    +           K     G     A   G T+    LLE    D++  + D
Sbjct: 21  ETDLEPPVVKR-------KKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVD 72

Query: 90  GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
           G T L  A    + +  K+L E+GAN   P N G   LH +A  G +++  YL+S+GA V
Sbjct: 73  GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 150 DSESDAG-TPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLL 207
            + +  G TPL  A     +E ++  +     +  A  ++    +L             L
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ-------WL 185

Query: 208 IQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNR 266
                N    A  G T LH+AA  G TE++K L++A  D N+ D DG  P+  AA  G  
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE 245

Query: 267 EAVEIL 272
           EA  IL
Sbjct: 246 EACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  161 bits (410), Expect = 4e-47
 Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 24/238 (10%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLE 77
            A    N+D    + K L + G       A+I   D      LH AA  G  D+ +YL+ 
Sbjct: 79  QACIDDNVD----MVKFLVENG-------ANINQPDNEGWIPLHAAASCGYLDIAEYLIS 127

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLF-EHGANPTIPSNLGATALHHSAGIGNI 136
           +    V   + +G+TPL  A  +   E  +      G +          A      I   
Sbjct: 128 Q-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD-------IEAARKEEERIMLR 179

Query: 137 ELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSA 195
           +   +L S        + +G T L  AA  G  E +K+L++   + N +  D  TPL +A
Sbjct: 180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA 239

Query: 196 VAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDED 252
              G      +L++   +   V   G T   +A +     + +   K     +   E 
Sbjct: 240 AHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 94.5 bits (236), Expect = 3e-22
 Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 13/141 (9%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLL 76
                     +L+   + L+           +     K G  ALH AA +G T+V K L+
Sbjct: 170 RKEEER---IMLRDARQWLNSGH-------INDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI 136
           +  + DV+ +D DG TPL  AA  G  E  + L E+  +    + +G TA   +      
Sbjct: 220 QA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILG 278

Query: 137 ELLTYLLSKGAEVDSESDAGT 157
            L      +      + +  +
Sbjct: 279 YLEELQKKQNLLHSEKREKKS 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  193 bits (492), Expect = 1e-58
 Identities = 71/258 (27%), Positives = 104/258 (40%), Gaps = 29/258 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA    +     I + L   G       AD+   +K G   LH A   G  +V + LL+ 
Sbjct: 65  AAGYNRVR----IVQLLLQHG-------ADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
               V+  D    TPL  AA +   E    L  HGA+PT+ +  G +A+  +      E 
Sbjct: 114 -GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172

Query: 139 LTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA 198
           LTY     +           L+ AA       VK  L        + + + T L  AVA+
Sbjct: 173 LTYEFKGHS-----------LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVAS 221

Query: 199 GSLTCLD---LLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ 254
                     LL++ GAN N       TPLH+AA+    ++++ L K GA  N  D  GQ
Sbjct: 222 LHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ 281

Query: 255 KPIQVAAARGNREAVEIL 272
             +  AA  G+ +   +L
Sbjct: 282 TALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  175 bits (446), Expect = 1e-51
 Identities = 56/247 (22%), Positives = 83/247 (33%), Gaps = 24/247 (9%)

Query: 32  KIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDED 89
           K A  L D         A        K+  L  AAR G  +    LL  L ++    D  
Sbjct: 5   KSALDLADPS-------AKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGR 57

Query: 90  GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
             TPL  AA        + L +HGA+       G   LH++   G+ E+   LL  GA V
Sbjct: 58  KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117

Query: 150 DSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI 208
           ++      TPL  AA   + E   +LL H A+P        + +  A        L    
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177

Query: 209 QAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG---N 265
                      G + L  A +      +K  L          +  +  +  A A      
Sbjct: 178 ----------KGHSLLQAARE-ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKR 226

Query: 266 REAVEIL 272
           ++  E+L
Sbjct: 227 KQVAELL 233

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  173 bits (440), Expect = 6e-51
 Identities = 60/274 (21%), Positives = 97/274 (35%), Gaps = 47/274 (17%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE 77
           NA   G+ +    + + L   G       A +   +      LH AA + + +VC  LL 
Sbjct: 97  NACSYGHYE----VTELLLKHG-------ACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145

Query: 78  ELKLDVDTQDEDGETPL---------------------LHAARQGHTETAKYLFEHGANP 116
               D    +  G++ +                     L AAR+      K         
Sbjct: 146 H-GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN 204

Query: 117 TIPSNLGATALHHSAGIG---NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVK 172
                   TALH +         ++   LL KGA V+ ++    TPL  AA     + ++
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME 264

Query: 173 VLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIG 231
           VL +H A  NA      T L  A  AG L    LL+  G++ +I+   G T   +     
Sbjct: 265 VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN--- 321

Query: 232 STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265
             E ++ +L        +D D    +  A+  G+
Sbjct: 322 --EAVQQILSESTPMRTSDVDY--RLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  157 bits (399), Expect = 7e-45
 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 3/173 (1%)

Query: 104 ETAKYLFEHGANPTIPSNLGATALHHSAGIGNI-ELLTYLLSKGAEVDSESDAG-TPLIW 161
           ++A  L +  A   +        L  +A  GN  +L+  L        +      TPL  
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64

Query: 162 AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-G 220
           AAG+ +   V++LL+H A+ +A+ +  + PL +A + G     +LL++ GA  N +    
Sbjct: 65  AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124

Query: 221 ATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
            TPLH AA     E+   LL  GADP + +  G+  + +A     RE +   F
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  129 bits (326), Expect = 2e-34
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 23/186 (12%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI-KDANKRGALHFAAREG---KTDVCKY 74
           L AA   +L  +KK           L+  + +  +  +   ALH A       +  V + 
Sbjct: 183 LQAAREADLAKVKKT----------LALEIINFKQPQSHETALHCAVASLHPKRKQVAEL 232

Query: 75  LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134
           LL +   +V+ +++D  TPL  AA + H +  + L +HGA      +LG TALH +A  G
Sbjct: 233 LLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG 291

Query: 135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLL 193
           +++    LLS G++    S  G T           EAV+ +L           D    LL
Sbjct: 292 HLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRT--SDVDYRLL 344

Query: 194 SAVAAG 199
            A  AG
Sbjct: 345 EASKAG 350

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  187 bits (477), Expect = 7e-58
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 3/209 (1%)

Query: 67  GKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA 126
               V    + +     +  D  GET L  AAR   ++ AK L E  A+  I  N+G T 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 127 LHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE 184
           LH +       +   L+   A ++D+    G TPLI AA    +  ++ L+  HA+ NA 
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121

Query: 185 TEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAG 243
            +   + L  A A  ++    +L++ GAN ++      TPL +AA  GS E  K LL   
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181

Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           A+ ++TD   + P  +A  R + + V +L
Sbjct: 182 ANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  179 bits (456), Expect = 9e-55
 Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 4/203 (1%)

Query: 48  VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK 107
           + +  D     ALH AAR  ++D  K LLE    D + QD  G TPL  A         +
Sbjct: 17  LHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQ 75

Query: 108 YLFEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGH 165
            L  + A +     + G T L  +A +    +L  L++  A+V++  D G + L WAA  
Sbjct: 76  ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135

Query: 166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA-GGATPL 224
              +A  VLL++ AN + +     TPL  A   GS     +L+   AN +I       P 
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 195

Query: 225 HIAADIGSTEIIKCLLKAGADPN 247
            IA +    +I++ L +     +
Sbjct: 196 DIAQERMHHDIVRLLDEYNLVRS 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  191 bits (488), Expect = 9e-58
 Identities = 62/279 (22%), Positives = 112/279 (40%), Gaps = 36/279 (12%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI-KDANKRGALHFAAREGKTDVCKYLLE 77
           L+    G+      I + +  +         +I    + R  LH+ A     +  + L+ 
Sbjct: 98  LHTEAAGSYA----ITEPITRES-------VNIIDPRHNRTVLHWIASNSSAEKSEDLIV 146

Query: 78  ELKL-------DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130
                      DV+  D D  TPL+ A          YL + GA+PTI +    +ALH +
Sbjct: 147 HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA 206

Query: 131 AGIGNIELLTYLLSK---GAEVDSESDAG-TPLIWAAGHGQQEAV---KVLLEHHANPN- 182
           A   +  ++ Y+L+      +++     G T L+  A +  ++ V   K+L+E  A  + 
Sbjct: 207 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY 266

Query: 183 -------AETEDNITPLLSAVAAGSLTCLDLLI-QAGANANIV-AGGATPLHIAADIGST 233
                  +E     T L  A    ++  +  L+ + G+N +     G TP+ +AA  G  
Sbjct: 267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI 326

Query: 234 EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           E++  L++ GA     D       Q+A A  +   V+I 
Sbjct: 327 EVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  178 bits (453), Expect = 1e-52
 Identities = 52/248 (20%), Positives = 86/248 (34%), Gaps = 31/248 (12%)

Query: 21  AACTGNLD----LLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKY 74
            A   + +    L+   AK+    G       AD+   +      L  A    +  +  Y
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAG-------ADVNAMDCDENTPLMLAVLARRRRLVAY 184

Query: 75  LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH---GANPTIPSNLGATALHHSA 131
           L++    D    ++   + L  AA         Y+        +       G TAL   A
Sbjct: 185 LMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243

Query: 132 GIGNIELLT---YLLSKGAEVDSESDAG---------TPLIWAAGHGQQEAVKVLLEHH- 178
                + +     L+ KGA+VD +  A          T L +AA       VK L+    
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303

Query: 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIK 237
           +N + + ED  TP++ A   G +  +  LIQ GA+   V A   T   +A       I+ 
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD 363

Query: 238 CLLKAGAD 245
              +   +
Sbjct: 364 IFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  177 bits (452), Expect = 2e-52
 Identities = 43/255 (16%), Positives = 78/255 (30%), Gaps = 27/255 (10%)

Query: 42  KGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQG 101
            G  K   +                G   +  +    L+      + +     LH    G
Sbjct: 47  DGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQ-IPTEPEPESPIK-LHTEAAG 104

Query: 102 HTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE--------LLTYLLSKGAEVDSES 153
                + +     N   P +   T LH  A   + E             ++ GA+V++  
Sbjct: 105 SYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD 163

Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ--- 209
               TPL+ A    ++  V  L++  A+P    +   + L  A A      +  ++    
Sbjct: 164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK 223

Query: 210 AGANANIV-AGGATPLHIAADIGSTE---IIKCLLKAGADPNVT--------DEDGQKPI 257
              +   +   G T L I A     +     K L++ GA  +             G+  +
Sbjct: 224 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283

Query: 258 QVAAARGNREAVEIL 272
             AA   N   V+ L
Sbjct: 284 HYAAQVSNMPIVKYL 298

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  166 bits (422), Expect = 4e-48
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 14/234 (5%)

Query: 51  IKDANKRGALHFAAREGKTDVCKYLLE-ELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           +++  K    H +    +  + +   +  +K   +        P       G+     + 
Sbjct: 21  MENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFN 80

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQE 169
             +   PT P       LH  A  G+  +   +  +   +       T L W A +   E
Sbjct: 81  HTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAE 139

Query: 170 AVKVLLEHH--------ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGG 220
             + L+ H         A+ NA   D  TPL+ AV A     +  L++AGA+  I     
Sbjct: 140 KSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSE 199

Query: 221 ATPLHIAADIGSTEIIKCLL---KAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
            + LH AA      ++  +L   K   D    D +G   + + A    R+ V  
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  113 bits (286), Expect = 1e-28
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 21  AACTGNLDLLKKIAKQLDDQG---KGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLE 77
            A     D +   AK L ++G           D +    R ALH+AA+     + KYL+ 
Sbjct: 242 VAHNEGRDQVA-SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 300

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
           E   + D QDEDG+TP++ AA++G  E   YL + GA+         TA   +    +  
Sbjct: 301 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN 360

Query: 138 LLTYLLSKGAEVD 150
           ++        E +
Sbjct: 361 IVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 80.4 bits (199), Expect = 6e-17
 Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 12/130 (9%)

Query: 144 SKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203
                  S + +   L+ A+  G  +  +  L+H++           P       G+   
Sbjct: 26  KNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSL---------YPNPQGYGNGNDFL 76

Query: 204 LDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262
            D                   LH  A  GS  I + + +   +        +  +   A+
Sbjct: 77  GDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIAS 134

Query: 263 RGNREAVEIL 272
             + E  E L
Sbjct: 135 NSSAEKSEDL 144

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  185 bits (472), Expect = 4e-57
 Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 12/223 (5%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            LH A  E +    + LL      +  +D+DG  PL  +      E   +L     N  +
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 119 PS---NLGATALHHSAGIGNIELLTYLLSK--GAEVDSESDAG-TPLIWAAGHGQQEAVK 172
                + G T  H +  +GN+E++  L  +    +++  ++ G T L  A G    E  +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

Query: 173 VLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA-NIV-AGGATPLHIAADI 230
            L+E+ A+   + + N  PL  A + GSL  ++LL   G +A N     G TPL  A   
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184

Query: 231 GSTEIIKCLL-KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           G  +    L+ K GA+ ++ D  G K   VA    N +  +  
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  159 bits (406), Expect = 2e-47
 Identities = 55/192 (28%), Positives = 78/192 (40%), Gaps = 9/192 (4%)

Query: 90  GETPLLHAARQGHT-ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
              PL  A  +    +  + L    +        G   LH S      E+ ++LLSK   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 149 V---DSESDAG-TPLIWAAGHGQQEAVKVLLEHH--ANPNAETEDNITPLLSAVAAGSLT 202
           V   D   D+G TP   A   G  E VK L +     + N  T   +T L  AV      
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 203 CLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAG-ADPNVTDEDGQKPIQVA 260
               LI+ GA+  I       PLH AA +GS ++I+ L   G +  N  D+ G  P+  A
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181

Query: 261 AARGNREAVEIL 272
            A G+ +A  +L
Sbjct: 182 LAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  140 bits (356), Expect = 5e-40
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 10/180 (5%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLE-EL 79
           +      +    I   L  + + ++    D  D +     H A   G  +V K L +  L
Sbjct: 43  SVSFQAHE----ITSFLLSKMENVNL--DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96

Query: 80  KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELL 139
           K D++     G T L  A  +   E +++L E+GA+  I        LH +A +G+++L+
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156

Query: 140 TYLLSKG-AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAV 196
             L   G + V+ +   G TPL  A   G  +A  +L+E + A  +            A+
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  137 bits (348), Expect = 9e-39
 Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 8/159 (5%)

Query: 122 LGATALHHSAGIGNIELLT-YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
           +    LH +        +   L SK + +  +   G  PL W+      E    LL    
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 180 NPNAE---TEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG---GATPLHIAADIGST 233
           N N +    +   TP   A + G+L  +  L       ++      G T LH+A      
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

Query: 234 EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           E+ + L++ GA   + D+  Q P+  AA+ G+ + +E+L
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 66.3 bits (163), Expect = 9e-13
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 15/94 (15%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+L     + + L           + +   +K+G   L  A  EG  D    L+E+
Sbjct: 147 AASVGSLK----LIELL------CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH 112
              + D  D  G      A    + +  K+   +
Sbjct: 197 YGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  177 bits (452), Expect = 4e-54
 Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 12/231 (5%)

Query: 52  KDANKRGALHFAAREGKTDVCKYLLEELKL---DVDTQDEDGETPLLHAARQGHTETAKY 108
              +    LH A    +  +   ++ ++K     ++ Q+   +TPL  A      E A+ 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-------DAGTPLIW 161
           L   G +P +    G T LH +   G +  +  L          S       +  T L  
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 162 AAGHGQQEAVKVLLEHHANPNAETEDN-ITPLLSAVAAGSLTCLDLLIQAGANANIVA-G 219
           A+ HG    V++L+   A+ NA+   N  T L  AV   +   + LL++ GA+ N V   
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
           G +P  +     ST I + L +   +      + +            E  E
Sbjct: 184 GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  172 bits (438), Expect = 6e-52
 Identities = 54/200 (27%), Positives = 79/200 (39%), Gaps = 13/200 (6%)

Query: 86  QDEDGETPLLHAARQGHTETA----KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
             EDG++ L  A             + +    A     +NL  T LH +      E+   
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 142 LLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP------NAETEDNITPLLS 194
           LL  G + +     G TPL  A   G   +V VL +    P       A   +  T L  
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 195 AVAAGSLTCLDLLIQAGANANIVAG--GATPLHIAADIGSTEIIKCLLKAGADPNVTDED 252
           A   G L  ++LL+  GA+ N      G T LH+A D+ + +++  LLK GAD N     
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 253 GQKPIQVAAARGNREAVEIL 272
           G  P Q+   R +    + L
Sbjct: 184 GYSPYQLTWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  132 bits (334), Expect = 1e-36
 Identities = 39/190 (20%), Positives = 66/190 (34%), Gaps = 20/190 (10%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE- 77
           A  T   +    IA+ L   G        D +  + RG   LH A  +G       L + 
Sbjct: 52  AVITNQPE----IAEALLGAG-------CDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100

Query: 78  ----ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL-GATALHHSAG 132
                L   +   + +G T L  A+  G+    + L   GA+        G TALH +  
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160

Query: 133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITP 191
           + N +L++ LL  GA+V+  +  G +P     G       + L +          ++   
Sbjct: 161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDE 220

Query: 192 LLSAVAAGSL 201
                 +   
Sbjct: 221 ESYDTESEFT 230

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 80.7 bits (200), Expect = 9e-18
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 183 AETEDNITPLLSAVAAGS----LTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIK 237
             TED  + L  A+        +  +  +    A  N       TPLH+A      EI +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            LL AG DP + D  G  P+ +A  +G   +V +L
Sbjct: 63  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  172 bits (439), Expect = 7e-53
 Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 33/199 (16%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
           ++H  A +G+ D  K  L +    V+  DE G TPL+ A+  G  ET ++L E GA+P I
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
            +    +AL  ++  G  +++  LL +  +++     G TPL++A      + V+ LL  
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIK 237
            A+   E +                                 G TP+ +A  +G  ++ +
Sbjct: 125 GADLTTEADS--------------------------------GYTPMDLAVALGYRKVQQ 152

Query: 238 CLLKAGADPNVTDEDGQKP 256
            +         ++     P
Sbjct: 153 VIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  150 bits (382), Expect = 2e-44
 Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 34/185 (18%)

Query: 90  GETPLLHAARQGHTETAKYLFEHGAN-PTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
               +   A QG  +  K     G N    P   G T L  ++  G IE + +LL  GA+
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207
               +    + L  A+  G  + V +LLE   + N    +                    
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN-------------------- 101

Query: 208 IQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE 267
                       G TPL  A      + ++ LL  GAD     + G  P+ +A A G R+
Sbjct: 102 ------------GGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRK 149

Query: 268 AVEIL 272
             +++
Sbjct: 150 VQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  148 bits (376), Expect = 1e-43
 Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVAD---IKDANKRGALHFAAREGKTDVCKYLLE 77
            A  G LD      K+   +G        +     D      L +A+  G+ +  ++LLE
Sbjct: 9   LAAQGELD----QLKEHLRKG-------DNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
               D     ++ E+ L  A+  G+T+    L E   +  I    G T L ++    +++
Sbjct: 58  W-GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK 116

Query: 138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITP 191
            +  LL++GA++ +E+D+G TP+  A   G ++  +V+  H             P
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 219 GGATPLHIAADIGSTEIIKCLLKAGAD-PNVTDEDGQKPIQVAAARGNREAVEIL 272
           G +  +H  A  G  + +K  L+ G +  N  DE G  P+  A+A G  E V  L
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL 55

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  171 bits (436), Expect = 4e-52
 Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 41/230 (17%)

Query: 51  IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLF 110
           +K       L  A +     V + L +     VD  D +G TPL  A      E AK L 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 111 EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAAGHGQQ 168
           + GA+  + +++  +   ++   G  E+L Y+L     +++  +  G   LI AA  G  
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119

Query: 169 EAVKVLLEH-HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIA 227
           + VK+LLE    + + + +                                 G T L  A
Sbjct: 120 DNVKLLLEDGREDIDFQNDF--------------------------------GYTALIEA 147

Query: 228 ADI-----GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             +        +I+K L++ GAD ++ D  G+  +  A  +G  E  +IL
Sbjct: 148 VGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  142 bits (360), Expect = 7e-41
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 21/201 (10%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLL 76
           L AA   +    KK+ + L D           + + +  G   L+ A      ++ K L+
Sbjct: 10  LEAANQRDT---KKVKEILQDTT-------YQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA-NPTIPSNLGATALHHSAGIGN 135
           +    D++ Q+   ++P L+A  QG TE   Y+ +H   +    +  G  AL  +A  G+
Sbjct: 60  DR-GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118

Query: 136 IELLTYLLSKG-AEVDSESDAG-TPLIWAA-----GHGQQEAVKVLLEHHANPNAETEDN 188
           I+ +  LL  G  ++D ++D G T LI A          Q+ VK+L+E+ A+ + +    
Sbjct: 119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG 178

Query: 189 ITPLLSAVAAGSLTCLDLLIQ 209
            T +  A   G      +L Q
Sbjct: 179 RTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  127 bits (321), Expect = 3e-35
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 20/167 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLEE 78
           A    +++    IAK L D+G       ADI  +++       +A  +G+T++  Y+L+ 
Sbjct: 46  AVHNNDIE----IAKALIDRG-------ADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG-ANPTIPSNLGATALHHSAGI---- 133
              D++  +  G   L+ AA +GH +  K L E G  +    ++ G TAL  + G+    
Sbjct: 95  ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN 154

Query: 134 -GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
               +++  L+  GA+   + ++G T + +A   G  E  K+L +++
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  167 bits (426), Expect = 5e-51
 Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 34/195 (17%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
           ++H  A +G+       +E+ +  ++  DE+G TPL+ AA  G     ++L ++GA+P +
Sbjct: 6   SVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
                 +AL  +   G  +++  LL  G +V+     G TPL++A      + VK+LLE 
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIK 237
            A+P  ET+                                 G   + +A  +G   + +
Sbjct: 125 GADPTIETDS--------------------------------GYNSMDLAVALGYRSVQQ 152

Query: 238 CLLKAGADPNVTDED 252
            +           ++
Sbjct: 153 VIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  146 bits (372), Expect = 4e-43
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 15/170 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
            A  G +           +Q          I   ++ G   L +AA  G+  V ++LL+ 
Sbjct: 10  LAAQGEML----YLATRIEQE-------NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              D     +  E+ L  A  +G+T+  K L + G +       G T L ++    +++ 
Sbjct: 59  -GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 117

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETED 187
           +  LL  GA+   E+D+G   +  A   G +   +V+  H        ++
Sbjct: 118 VKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 65.5 bits (161), Expect = 5e-13
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 219 GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             +  +H  A  G    +   ++     N TDE+G  P+  AAA G    VE L
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL 55

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  123 bits (311), Expect = 2e-33
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 21/175 (12%)

Query: 122 LGATALHHSAGIGNIELLT-YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
           +  + L  +A   +++ L+  L  +G EV      G T L  AA +   EA  VL+E   
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 180 N-----PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI--------------VAGG 220
                   +E  +  T L  AV   ++  +  L+  GA+ +               +  G
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121

Query: 221 ATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL 275
             PL  AA +GS EI++ L++ GAD    D  G   + +   + N+     ++ L
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNL 176

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  166 bits (422), Expect = 4e-50
 Identities = 55/223 (24%), Positives = 81/223 (36%), Gaps = 40/223 (17%)

Query: 51  IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLF 110
             D N          +       +L          +D    TPL+ A   G       L 
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLV 55

Query: 111 EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQE 169
           E+          G+TAL  +     + +   LLSKG+ V+++  +G TPL+W+   G  E
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE 115

Query: 170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAAD 229
               LLEH AN N    +                                G TPL +A+ 
Sbjct: 116 MSYFLLEHGANVNDRNLE--------------------------------GETPLIVASK 143

Query: 230 IGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            G +EI+K LL+ GAD +  D  G      A   G +E ++I 
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  149 bits (379), Expect = 9e-44
 Identities = 50/208 (24%), Positives = 74/208 (35%), Gaps = 38/208 (18%)

Query: 42  KGLSKTVADI----KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHA 97
           +       D     +D+  R  L  A   G  +    L+E     ++ +D +G T L+ A
Sbjct: 17  EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWA 75

Query: 98  ARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG- 156
            +      A+ L   G+N       G T L  S   G  E+  +LL  GA V+  +  G 
Sbjct: 76  VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI 216
           TPLI A+ +G+ E VK LLE  A+ +A                                 
Sbjct: 136 TPLIVASKYGRSEIVKKLLELGADISARDLT----------------------------- 166

Query: 217 VAGGATPLHIAADIGSTEIIKCLLKAGA 244
              G T    A   G  E+IK   +   
Sbjct: 167 ---GLTAEASARIFGRQEVIKIFTEVRR 191

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  166 bits (422), Expect = 1e-49
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 6/186 (3%)

Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG 146
           +  G+  L    R    +T      HG      + L    L  S+  G  +L+  ++ + 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 147 AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD 205
            +    +D G T L  A   G  E VK L++   N NA   D  TPL  A +  ++    
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120

Query: 206 LLIQAGANANIV----AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
            L+++GA    +       A       + G T+  + L        + ++     +    
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYE 180

Query: 262 ARGNRE 267
            + + E
Sbjct: 181 PQNDDE 186

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  163 bits (414), Expect = 2e-48
 Identities = 43/218 (19%), Positives = 81/218 (37%), Gaps = 10/218 (4%)

Query: 53  DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH 112
           +   + +L    R          +    + V   +      LL ++ +G  +  + +   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 113 GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAV 171
             +P++P++ G TALH++   G+ E++ +L+  G  V++    G TPL  AA     +  
Sbjct: 60  VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC 119

Query: 172 KVLLEHHANPNAETEDNI---TPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIA 227
           K L+E  A   A T  ++         +  G   C   L        I+  G    L   
Sbjct: 120 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDY 179

Query: 228 ADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265
                 E+    +K G    +   + +  I+   AR N
Sbjct: 180 EPQNDDEL---PMKEGDCMTIIHREDEDEIEWWWARLN 214

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  147 bits (373), Expect = 2e-42
 Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 25/217 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
              T           +    G         +K  N      L  ++ EG+ D+ + ++ E
Sbjct: 12  GKRTNLRK----TGSERIAHG-------MRVK-FNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              D    +++G T L +A   GHTE  K+L + G N     + G T LH +A   N+++
Sbjct: 60  -VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118

Query: 139 LTYLLSKGAEVDSESDAG----TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLS 194
             +L+  GA V + + +              G  +  + L           +  I  L  
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWD 178

Query: 195 AVAAGSLTCLDLLIQAGANANIVAGG---ATPLHIAA 228
                     +L ++ G    I+            A 
Sbjct: 179 YEPQND---DELPMKEGDCMTIIHREDEDEIEWWWAR 212

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  115 bits (290), Expect = 3e-30
 Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 23/190 (12%)

Query: 18  FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYL 75
            L+++  G  D    + +++  +         D    N  G  ALH A   G T++ K+L
Sbjct: 41  LLDSSLEGEFD----LVQRIIYEV-------DDPSLPNDEGITALHNAVCAGHTEIVKFL 89

Query: 76  LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP---TIPSNLGATALHHSAG 132
           ++   ++V+  D DG TPL  AA   + +  K+L E GA     T      A        
Sbjct: 90  VQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEME 148

Query: 133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA--ETEDNI 189
            G  +   +L     ++   +      L         E   + ++           +++ 
Sbjct: 149 EGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIHREDEDE 205

Query: 190 TPLLSAVAAG 199
                A    
Sbjct: 206 IEWWWARLND 215

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 90.4 bits (225), Expect = 4e-21
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 15/152 (9%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE 77
           NA C G+ +    I K L   G        ++  A+  G   LH AA      VCK+L+E
Sbjct: 76  NAVCAGHTE----IVKFLVQFG-------VNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124

Query: 78  E--LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
                  +   D            +G+T+ +++L+       I +     AL       +
Sbjct: 125 SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQND 184

Query: 136 IELLTYLLSKGAEVDSESDAGTPLIWAAGHGQ 167
            EL          +  E +      WA  + +
Sbjct: 185 DELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  165 bits (420), Expect = 2e-49
 Identities = 38/216 (17%), Positives = 70/216 (32%), Gaps = 11/216 (5%)

Query: 54  ANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFE 111
             K G   +  A    +      L  E + D+    +  +T       +G T      + 
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIE-EGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 66

Query: 112 HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA 170
                          LH +A  GN+  L   L     V+    AG T L WA   G ++ 
Sbjct: 67  AEQA-----ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI 121

Query: 171 VKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAA 228
           V++L        N + +   T L +A   G    + LL+  GA  ++          +A 
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT 181

Query: 229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
           +     ++K      A   +++ +     + +    
Sbjct: 182 NAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  160 bits (408), Expect = 1e-47
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 8/190 (4%)

Query: 86  QDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK 145
             + G+  +  A       T   L+    +    +++  T        G   L       
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL-----IP 62

Query: 146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL 204
              V  ++++   PL  AA  G    ++  L++    N   +   T L  A   G    +
Sbjct: 63  SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

Query: 205 DLLI-QAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262
           ++L  Q     N     G T LH AA  G  +I++ LL  GA  ++ + + +    +A  
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182

Query: 263 RGNREAVEIL 272
                 ++  
Sbjct: 183 AACASLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  135 bits (343), Expect = 4e-38
 Identities = 35/184 (19%), Positives = 58/184 (31%), Gaps = 17/184 (9%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEEL 79
                G   L+                     +  +    LH AA+ G     +  L+  
Sbjct: 51  KGTSKGRTGLIPSN--------------YVAEQAESIDNPLHEAAKRGNLSWLRECLDN- 95

Query: 80  KLDVDTQDEDGETPLLHAARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIEL 138
           ++ V+  D+ G T L  A   GH +  + LF          + LG TALH +A  G  ++
Sbjct: 96  RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADI 155

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
           +  LL+KGA  D  +         A        +K      A       ++      +  
Sbjct: 156 VQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215

Query: 198 AGSL 201
               
Sbjct: 216 EHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  118 bits (297), Expect = 2e-31
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 8/160 (5%)

Query: 116 PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
           P  P   G   +  +           L  +  ++   +D   T        G     +  
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTG 59

Query: 175 LEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGST 233
           L        + E    PL  A   G+L+ L   +      N +   G+T L+ A   G  
Sbjct: 60  LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119

Query: 234 EIIKCLL-KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           +I++ L  +   + N  ++ G   +  AA +G  + V++L
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  165 bits (418), Expect = 3e-49
 Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 5/216 (2%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
             + A      ++ + +L + K      D+D  T L  A   GHTE  ++L + G     
Sbjct: 10  ICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
             + G + LH +A  G  E++  LL KGA V++ +  G TPL +AA   + E   +LLE 
Sbjct: 69  KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEII 236
            ANP+A+   + T +  A A G+L  + +L+   A+ NI    G TPLH+A D    E  
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA 188

Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           K L+  GA   + +++ + P+QVA   G    +   
Sbjct: 189 KFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  154 bits (390), Expect = 4e-45
 Identities = 63/234 (26%), Positives = 104/234 (44%), Gaps = 17/234 (7%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLL 76
            N A +G L    ++ +++           +     D + R ALH+A   G T++ ++LL
Sbjct: 11  CNLAYSGKL---DELKERILADK-------SLATRTDQDSRTALHWACSAGHTEIVEFLL 60

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI 136
           +   + V+ +D+ G +PL  AA  G  E  K L   GA+    +  G T LH++A     
Sbjct: 61  QL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119

Query: 137 ELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSA 195
           E+   LL  GA  D++     T +  AA  G  + V +LL + A+ N +  +  TPL  A
Sbjct: 120 EIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179

Query: 196 VAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNV 248
                +     L+  GA+  I      TPL +A   G   +I   L  G + ++
Sbjct: 180 CDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  146 bits (370), Expect = 4e-42
 Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 2/187 (1%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
                   A      E  + +    +  T       TALH +   G+ E++ +LL  G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207
           V+ + DAG +PL  AA  G  E VK LL   A+ NA  ++  TPL  A +        +L
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 208 IQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNR 266
           ++ GAN +      AT +H AA  G+ +++  LL   A  N+ D +G  P+ +A      
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185

Query: 267 EAVEILF 273
           E  + L 
Sbjct: 186 EEAKFLV 192

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  161 bits (409), Expect = 2e-48
 Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 9/182 (4%)

Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGAN-PTIPSNLGATALHHSAGIGNIELLTYLLSK 145
             +    +    R+G+    +   ++  N      + G + LH +   G   ++  L+ +
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL 204
           GA ++  +    TPL  AA HG ++ V+ LL++ A+ NA  E    PL  A   G     
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121

Query: 205 DLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + L+  GA  +I    G  P+  A       + +   K G + N      + P +    +
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN------RIPYKDTFWK 175

Query: 264 GN 265
           G 
Sbjct: 176 GT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  160 bits (407), Expect = 4e-48
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 6/176 (3%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            +    REG     +  L+  + D++  D+ G +PL  A R+G +   + L   GA   +
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
            +    T LH +A  G+ +++  LL   A++++ ++ G  PL +A   GQ +  + L+ +
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGST 233
            A  +   +    P+  A A       +   + G N N       P       G+T
Sbjct: 128 GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN-----RIPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  132 bits (336), Expect = 1e-37
 Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 14/166 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLEE 78
               GN        +        L  T  D+   D +    LH+A REG++ V + L+  
Sbjct: 12  QCREGNAV----AVRLW------LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
               ++  +   +TPL  AA  GH +  + L ++ A+    +  G   LH++   G  ++
Sbjct: 62  -GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 120

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
              L++ GA V   +  G  P+  A    ++   +   +   N N 
Sbjct: 121 AEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 80.6 bits (200), Expect = 4e-18
 Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 20/118 (16%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE 77
            AA  G+ D    I ++L           ADI   N+ G   LH+A   G+  V + L+ 
Sbjct: 78  LAASHGHRD----IVQKLLQYK-------ADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
                V   ++ GE P+  A         +   + G       NL       +   G 
Sbjct: 127 N-GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ------NLNRIPYKDTFWKGT 177

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  162 bits (412), Expect = 4e-48
 Identities = 46/216 (21%), Positives = 76/216 (35%), Gaps = 18/216 (8%)

Query: 53  DANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLF 110
           D           AAR+        LLE    DVD  DE+G T LL  A  G  +  + L 
Sbjct: 40  DVVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLA 97

Query: 111 EHGANPTIP-SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168
           E GA+        G TALH +AG    E++  L+  GA+++ E + G T L  A    + 
Sbjct: 98  EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT 157

Query: 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAA 228
                 ++       E    +  +L           +++ + G        G    ++  
Sbjct: 158 TPKGNPMQFGRRIGLE---KVINVLEGQVFEYAEVDEIVEKRGK-------GKDVEYLVR 207

Query: 229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
                +         A+     +D +  ++ A A  
Sbjct: 208 WKDGGDCEWVKGVHVAEDVA--KDYEDGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  150 bits (382), Expect = 1e-43
 Identities = 43/216 (19%), Positives = 73/216 (33%), Gaps = 17/216 (7%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
                 ++G +         +  DV     + ETP   AAR+   +    L     +   
Sbjct: 18  EYLIEWKDGHSPSWVPSS-YIAADV---VSEYETPWWTAARKADEQALSQLL-EDRDVDA 72

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDS--ESDAGTPLIWAAGHGQQEAVKVLLE 176
               G TAL   AG+G+ + +  L   GA++D        T L  AAG+ + E V+ L+E
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 132

Query: 177 HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEII 236
             A+   E E  +T L  A      T     +Q G            +         E+ 
Sbjct: 133 LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG--LEKVINVLEGQVFEYAEVD 190

Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           + + K G   +V          +   +   +   + 
Sbjct: 191 EIVEKRGKGKDV--------EYLVRWKDGGDCEWVK 218

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  143 bits (362), Expect = 1e-40
 Identities = 38/189 (20%), Positives = 74/189 (39%), Gaps = 10/189 (5%)

Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG 146
             +G    L   + GH+ +        A+     +   T    +A   + + L+ LL + 
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLL-ED 67

Query: 147 AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA-ETEDNITPLLSAVAAGSLTCL 204
            +VD+  + G T L++ AG G  + V++L E  A+ +  +    +T L  A        +
Sbjct: 68  RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 127

Query: 205 DLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + L++ GA+  +    G T L +A +I  T      ++ G    +        +      
Sbjct: 128 EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI---NVLEGQVF 184

Query: 264 GNREAVEIL 272
              E  EI+
Sbjct: 185 EYAEVDEIV 193

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  140 bits (356), Expect = 7e-40
 Identities = 47/185 (25%), Positives = 72/185 (38%), Gaps = 24/185 (12%)

Query: 90  GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
           GE   +  +R                       GA         G+           A+V
Sbjct: 1   GEVNKIIGSRTAGE-------------------GAMEYLIEWKDGHSPSWVPSSYIAADV 41

Query: 150 DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
            SE +  TP   AA    ++A+  LL    + +A  E+  T LL     GS  C+ LL +
Sbjct: 42  VSEYE--TPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 98

Query: 210 AGANANI--VAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE 267
           AGA+ +   + GG T LH+AA     E+++ L++ GAD  V DE G   +++A       
Sbjct: 99  AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 158

Query: 268 AVEIL 272
                
Sbjct: 159 PKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  128 bits (325), Expect = 2e-35
 Identities = 36/183 (19%), Positives = 53/183 (28%), Gaps = 15/183 (8%)

Query: 49  ADI--KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD-EDGETPLLHAARQGHTET 105
            D+   D N R AL F A  G     + L E    D+D +D   G T L  AA     E 
Sbjct: 68  RDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEV 126

Query: 106 AKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGH 165
            + L E GA+  +    G TAL  +  I         +  G  +  E      ++     
Sbjct: 127 VEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV--INVLEGQVF 184

Query: 166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLH 225
              E  +++ +                          C  +     A           L 
Sbjct: 185 EYAEVDEIVEKR--------GKGKDVEYLVRWKDGGDCEWVKGVHVAEDV-AKDYEDGLE 235

Query: 226 IAA 228
            A 
Sbjct: 236 YAV 238

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  154 bits (392), Expect = 6e-46
 Identities = 62/188 (32%), Positives = 87/188 (46%), Gaps = 33/188 (17%)

Query: 86  QDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK 145
              D    LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  
Sbjct: 10  HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL 204
           GA+V++   AG TPL  AA  G  E V+VLL++ A+ NA   +                 
Sbjct: 70  GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME----------------- 112

Query: 205 DLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
                          G TPLH+AA  G  EI++ LLK GAD N  D+ G+    ++   G
Sbjct: 113 ---------------GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157

Query: 265 NREAVEIL 272
           N +  EIL
Sbjct: 158 NEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  148 bits (376), Expect = 1e-43
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 34/195 (17%)

Query: 48  VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK 107
                 ++    L  AAR G+ D  + L+     DV+ +D  G TPL  AA  GH E  +
Sbjct: 6   HHHHHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVE 64

Query: 108 YLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG 166
            L ++GA+     + G T L  +A  G++E++  LL  GA+V++    G TPL  AA  G
Sbjct: 65  VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG 124

Query: 167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHI 226
             E V+VLL++ A+ NA+ +                                 G T   I
Sbjct: 125 HLEIVEVLLKNGADVNAQDKF--------------------------------GKTAFDI 152

Query: 227 AADIGSTEIIKCLLK 241
           + D G+ ++ + L K
Sbjct: 153 SIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  130 bits (330), Expect = 8e-37
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 15/160 (9%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G  D      + L   G       AD+   +  G   LH AA  G  ++ + LL+ 
Sbjct: 21  AARAGRDD----EVRILMANG-------ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              DV+  D  G TPL  AA  GH E  + L ++GA+       G T LH +A  G++E+
Sbjct: 70  -GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEI 128

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
           +  LL  GA+V+++   G T    +  +G ++  ++L + 
Sbjct: 129 VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  150 bits (382), Expect = 9e-45
 Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 34/185 (18%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           D    LL AAR G  +  + L  +GA  T    LG + LH +A  G+      LL  G  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207
            D+ +    TPL  AA  G    V+VLL+H A+ NA+                       
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML-------------------- 99

Query: 208 IQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE 267
                         T LH A +    E+++ L+K GAD +   +  +    ++   GN +
Sbjct: 100 ------------KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED 147

Query: 268 AVEIL 272
             EIL
Sbjct: 148 LAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  136 bits (346), Expect = 2e-39
 Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 35/182 (19%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            L  AAR G+ D  + L+        T D  G +PL  AA+ GH  T + L   G +   
Sbjct: 5   KLLEAARAGQDDEVRILMAN-GAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
            + +  T LH +A  G+  ++  LL  GA+V+++     T L WA  H  QE V++L+++
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIK 237
            A+ + +++                                   T   I+ D G+ ++ +
Sbjct: 123 GADVHTQSKF--------------------------------CKTAFDISIDNGNEDLAE 150

Query: 238 CL 239
            L
Sbjct: 151 IL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  120 bits (304), Expect = 2e-33
 Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 14/158 (8%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI-KDANKRGALHFAAREGKTDVCKYLLE 77
           L AA  G  D      + L   G       A    D      LH AA+ G     + LL 
Sbjct: 7   LEAARAGQDD----EVRILMANG-------APFTTDWLGTSPLHLAAQYGHFSTTEVLLR 55

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
              +  D + +   TPL  AA +GH    + L +HGA+      L  TALH +    + E
Sbjct: 56  A-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
           ++  L+  GA+V ++S    T    +  +G ++  ++L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  148 bits (377), Expect = 7e-44
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 6/162 (3%)

Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG 146
            E     L  AA +G  E    L ++  N    +  G TAL     +GN E+   LL +G
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRG 60

Query: 147 AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD 205
           A  D +   G   +  AA  G  + ++ LLE  A+ N E  +   PL  A   G L  ++
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120

Query: 206 LLIQAGANANIVAG---GATPLHIAADIGSTEIIKCLLKAGA 244
            L++  A +N+      G T   +A   G  E++  +   GA
Sbjct: 121 FLVKHTA-SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  134 bits (341), Expect = 2e-38
 Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 4/156 (2%)

Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
           +      L  +A  G++E LT LL     V++++  G T L      G  E  + LL   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRG 60

Query: 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIK 237
           ANP+ +       +  A  AG L  L  L++  A+ NI    G  PLH+AA  G   +++
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120

Query: 238 CLLKAGA-DPNVTDEDGQKPIQVAAARGNREAVEIL 272
            L+K  A +    +  G     +A   G  E V ++
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  118 bits (298), Expect = 3e-32
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 17/163 (10%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+L+        L            ++   N  G  AL      G  ++ + LL  
Sbjct: 12  AAARGDLE----QLTSLLQNN-------VNVNAQNGFGRTALQVMK-LGNPEIARRLLLR 59

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              + D +D  G   +  AAR G  +T + L E  A+  I  N G   LH +A  G++ +
Sbjct: 60  -GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118

Query: 139 LTYLLSKGAE-VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
           + +L+   A  V   +  G T    A  +G+ E V ++  + A
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  150 bits (380), Expect = 1e-43
 Identities = 43/206 (20%), Positives = 70/206 (33%), Gaps = 10/206 (4%)

Query: 73  KYLLEELKLDVDTQDE---DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHH 129
           + +L +             +    LL AA  G  E  +   +   +P+ P+  G TALH+
Sbjct: 2   RSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 130 SAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAET-ED 187
           +    N  ++ +L++ GA V+S    G TPL  AA          L++H A   A T  D
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120

Query: 188 NITPLLSAVAA--GSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGA 244
             T          G   C   L     +  ++ +G    L   +     + +        
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS-AEFGDELSFREGESV 179

Query: 245 DPNVTDEDGQKPIQVAAARGNREAVE 270
                D   +     AA  G    V 
Sbjct: 180 TVLRRDGPEETDWWWAALHGQEGYVP 205

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  149 bits (379), Expect = 2e-43
 Identities = 42/216 (19%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 49  ADIKDANKRG-----ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT 103
              + A +        L  AA  G+ +V +  ++E   D    +E+G T L +A    + 
Sbjct: 9   GSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANY 67

Query: 104 ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD--SESDAGTPLIW 161
               +L   GAN   P + G T LH +A   +  +   L+  GA +   + SD  T    
Sbjct: 68  SIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127

Query: 162 AAGH--GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG 219
              +  G  +    L +   +        +  L    +A     L              G
Sbjct: 128 CDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGESVTVLRRDG 186

Query: 220 -GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ 254
              T    AA  G    +      G  P V  +  +
Sbjct: 187 PEETDWWWAALHGQEGYVPRNY-FGLFPRVKPQRSK 221

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 92.3 bits (230), Expect = 6e-22
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 171 VKVLLEHHANPNAETEDNITP---LLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHI 226
           ++ +L    +P       + P   LL A   G L  +   ++   + +     G T LH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           A    +  I+  L+ AGA+ N  D  G  P+  AA+  +      L
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL 106

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  147 bits (375), Expect = 2e-43
 Identities = 52/188 (27%), Positives = 76/188 (40%), Gaps = 35/188 (18%)

Query: 87  DEDGETPLLHAARQGHTETAKYLFE-HGANPTIPSNLGATALHHSAGIGNIELLTYLLSK 145
           + + +  LL AA+ G  ET K L      N        +T LH +AG   + ++ YLL  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL 204
           GA+V ++   G  PL  A  +G  E  ++L++H A  N                      
Sbjct: 65  GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW----------------- 107

Query: 205 DLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
                            TPLH AA  G  EI K LL+ GADP   + DG  P+      G
Sbjct: 108 ---------------KFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD-LVKDG 151

Query: 265 NREAVEIL 272
           + +  ++L
Sbjct: 152 DTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  142 bits (361), Expect = 2e-41
 Identities = 50/195 (25%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 53  DANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLF 110
             N      L  AA+ G  +  K L     ++    +    TPL  AA        +YL 
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 111 EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQE 169
           +HGA+       G   LH++   G+ E+   L+  GA V+       TPL  AA  G+ E
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122

Query: 170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAAD 229
             K+LL+H A+P  +  D                                G TPL +  D
Sbjct: 123 ICKLLLQHGADPTKKNRD--------------------------------GNTPLDLVKD 150

Query: 230 IGSTEIIKCLLKAGA 244
            G T+I   L    A
Sbjct: 151 -GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  124 bits (313), Expect = 2e-34
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 15/162 (9%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+++      K+L       +    + +D   R    LHFAA   +  V +YLL+ 
Sbjct: 15  AAKAGDVE----TVKKL------CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              DV  +D+ G  PL +A   GH E A+ L +HGA   +      T LH +A  G  E+
Sbjct: 65  -GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
              LL  GA+   ++  G TPL      G  +   +L    A
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  112 bits (282), Expect = 6e-30
 Identities = 43/129 (33%), Positives = 60/129 (46%), Gaps = 4/129 (3%)

Query: 146 GAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCL 204
           GA  +S  +A   L+ AA  G  E VK L      N         TPL  A     ++ +
Sbjct: 1   GAMGNS--EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV 58

Query: 205 DLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + L+Q GA+ +    GG  PLH A   G  E+ + L+K GA  NV D     P+  AAA+
Sbjct: 59  EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK 118

Query: 264 GNREAVEIL 272
           G  E  ++L
Sbjct: 119 GKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 73.6 bits (182), Expect = 8e-16
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 15/97 (15%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLE 77
           NA   G+ +    +A+ L   G       A +   D  K   LH AA +GK ++CK LL+
Sbjct: 81  NACSYGHYE----VAELLVKHG-------AVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
               D   ++ DG TP L   + G T+    L    A
Sbjct: 130 H-GADPTKKNRDGNTP-LDLVKDGDTDIQDLLRGDAA 164

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  144 bits (367), Expect = 2e-42
 Identities = 39/184 (21%), Positives = 63/184 (34%), Gaps = 35/184 (19%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            L  AA  G     + LL    +  D  +  G+T  L     G T  A  L + GA+P +
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQVMMFGSTAIALELLKQGASPNV 63

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
               G + +H +A  G ++ L  L+  GA+V+     G  P+  A   G    V  L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA- 122

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIK 237
            ++ +                                     G TPL +A   G+ +++ 
Sbjct: 123 ESDLHRRDAR--------------------------------GLTPLELALQRGAQDLVD 150

Query: 238 CLLK 241
            L  
Sbjct: 151 ILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  124 bits (314), Expect = 1e-34
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 16/162 (9%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLL 76
             AA  G++  ++++          L + +      N+ G  AL      G T +   LL
Sbjct: 7   SGAAARGDVQEVRRL----------LHRELVHPDALNRFGKTALQVMM-FGSTAIALELL 55

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI 136
           ++     + QD  G +P+  AAR G  +T K L EHGA+  +P   GA  +H +   G+ 
Sbjct: 56  KQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114

Query: 137 ELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
            ++++L +  +++      G TPL  A   G Q+ V +L  H
Sbjct: 115 AVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  112 bits (284), Expect = 2e-30
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 156 GTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA 214
           G  L  AA  G  + V+ LL     +P+A      T L      GS      L++ GA+ 
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASP 61

Query: 215 NIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           N+    G +P+H AA  G  + +K L++ GAD NV D  G  PI +A   G+   V  L
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  143 bits (364), Expect = 4e-42
 Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 7/159 (4%)

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
           ++    +  E     L  AA +G  E  + L E GANP  P++ G   +     +G+  +
Sbjct: 1   MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ-VMMMGSARV 59

Query: 139 LTYLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAV 196
              LL  GAE +    A    P+  AA  G  + + VL    A  +        P+  A 
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE 119

Query: 197 AAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEI 235
             G       L  A         G+    I A  G ++I
Sbjct: 120 ELGHRDVARYLRAAAGGTR----GSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  137 bits (347), Expect = 2e-39
 Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 4/146 (2%)

Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           A          L  AA  G+ +  + LLE    + +  +  G  P +     G    A+ 
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRP-IQVMMMGSARVAEL 62

Query: 109 LFEHGANPTIPSNLGAT-ALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG 166
           L  HGA P        T  +H +A  G ++ L  L   GA +D     G  P+  A   G
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 122

Query: 167 QQEAVKVLLEHHANPNAETEDNITPL 192
            ++  + L              I   
Sbjct: 123 HRDVARYLRAAAGGTRGSNHARIDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  123 bits (311), Expect = 2e-34
 Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 143 LSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT 202
           +   A    E  +   L  AA  G+ E V+ LLE  ANPNA       P+      GS  
Sbjct: 1   MEPAAGSSME-PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSAR 58

Query: 203 CLDLLIQAGANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
             +LL+  GA  N    A    P+H AA  G  + +  L +AGA  +V D  G+ P+ +A
Sbjct: 59  VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118

Query: 261 AARGNREAVEIL 272
              G+R+    L
Sbjct: 119 EELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  104 bits (262), Expect = 3e-27
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 20/154 (12%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G ++      + L + G       A+    N  G   +      G   V + LL  
Sbjct: 19  AAARGRVE----EVRALLEAG-------ANPNAPNSYGRRPIQVMMM-GSARVAELLLLH 66

Query: 79  LKLDVDTQDEDGETPLLH-AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
              + +  D    T  +H AAR+G  +T   L   GA   +    G   +  +  +G+ +
Sbjct: 67  -GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD 125

Query: 138 LLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAV 171
           +  YL +                  A  G  +  
Sbjct: 126 VARYLRAAAGGT----RGSNHARIDAAEGPSDIP 155

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  140 bits (356), Expect = 1e-40
 Identities = 37/177 (20%), Positives = 72/177 (40%), Gaps = 7/177 (3%)

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI 136
           E  K+       +G    L   + GH+ +        A+     +   T    +A   + 
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADE 57

Query: 137 ELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA-ETEDNITPLLS 194
           + L+ LL +  +VD+  + G T L++ AG G  + V++L E  A+ +  +    +T L  
Sbjct: 58  QALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116

Query: 195 AVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD 250
           A        ++ L++ GA+  +    G T L +A +I  T      ++ G    +  
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  139 bits (353), Expect = 4e-40
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA 179
           +  GA         G+           A+V SE +  TP   AA    ++A+  LL    
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE--TPWWTAARKADEQALSQLL-EDR 67

Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI--VAGGATPLHIAADIGSTEIIK 237
           + +A  E+  T LL     GS  C+ LL +AGA+ +   + GG T LH+AA     E+++
Sbjct: 68  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127

Query: 238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            L++ GAD  V DE G   +++A            
Sbjct: 128 ALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  135 bits (343), Expect = 1e-38
 Identities = 45/198 (22%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 49  ADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA 106
                    GA       ++G +            DV     + ETP   AAR+   +  
Sbjct: 5   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI-AADVV---SEYETPWWTAARKADEQAL 60

Query: 107 KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS--ESDAGTPLIWAAG 164
             L     +       G TAL   AG+G+ + +  L   GA++D        T L  AAG
Sbjct: 61  SQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119

Query: 165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPL 224
           + + E V+ L+E  A+   E E  +T L  A      T     +Q G             
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR----------- 168

Query: 225 HIAADIGSTEIIKCLLKA 242
                IG  ++I  L   
Sbjct: 169 -----IGLEKVINVLEGQ 181

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  139 bits (351), Expect = 8e-40
 Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIP---SNLGATALHHSAGIGNIELLTYLLSK 145
                +  AA  G  E    LFE G         SN+    L ++      ++  +L++K
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 146 GAEVDSESDAG-TPLIWAAGHGQQ------EAVKVLLEHHANPNAETEDNITPLLSAVAA 198
           GA++ S +  G T        G        E  K+ LE  A+  A  +     +   +  
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 199 GSLTCLD-------LLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD 250
             +   +       +  Q+G    I    G T L           +K +       N+ +
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

Query: 251 ED 252
             
Sbjct: 185 NS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  114 bits (286), Expect = 2e-30
 Identities = 26/188 (13%), Positives = 63/188 (33%), Gaps = 31/188 (16%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAA-----REGKTDVCK 73
             AA  G  +       +L ++G        + K++  +  + +        E +  +  
Sbjct: 11  SAAAMLGTYE----DFLELFEKG-------YEDKESVLKSNILYDVLRNNNDEARYKISM 59

Query: 74  YLLEELKLDVDTQDEDGETPLLHAARQGH------TETAKYLFEHGANPTIPSNLGATAL 127
           +L+ +   D+ ++ ++G T      + G       TE  K   E GA+ T         +
Sbjct: 60  FLINK-GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118

Query: 128 HHSAGIGNIELL-------TYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
             +     ++               G ++  +   G T L +     +  A+K++ ++  
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178

Query: 180 NPNAETED 187
             N +   
Sbjct: 179 KYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 70.5 bits (173), Expect = 1e-14
 Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 4/94 (4%)

Query: 183 AETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIA----ADIGSTEIIKC 238
           +        + +A   G+      L + G         +  L+       D    +I   
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 239 LLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           L+  GAD     ++G          G  +     
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTT 94

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  135 bits (342), Expect = 4e-39
 Identities = 34/166 (20%), Positives = 55/166 (33%), Gaps = 35/166 (21%)

Query: 82  DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
            +       +  L  AA +G  ET + L E GA+P   +  G   +     +G+ ++   
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAEL 62

Query: 142 LLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
           LL  GAE +    A    P+  AA  G  + + VL    A  +                 
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW------------ 110

Query: 200 SLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGAD 245
                               G  P+ +A + G  +I + L  A  D
Sbjct: 111 --------------------GRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  130 bits (330), Expect = 2e-37
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 49  ADIKDANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA 106
             I          L  AA  G+ +  + LLE    D +  +  G  P +     G  + A
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRP-IQVMMMGSAQVA 60

Query: 107 KYLFEHGANPTIPSNLGAT-ALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAG 164
           + L  HGA P        T  +H +A  G ++ L  L   GA +D     G  P+  A  
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120

Query: 165 HGQQEAVKVLLEHHAN 180
            G ++  + L     +
Sbjct: 121 QGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  123 bits (311), Expect = 2e-34
 Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 4/130 (3%)

Query: 146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL 204
              +     +    L  AA  GQ E V+ LLE  A+PNA       P+      GS    
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVA 60

Query: 205 DLLIQAGANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262
           +LL+  GA  N    A    P+H AA  G  + +  L +AGA  +V D  G+ P+ +A  
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120

Query: 263 RGNREAVEIL 272
           +G+R+    L
Sbjct: 121 QGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 38.2 bits (90), Expect = 8e-04
 Identities = 8/31 (25%), Positives = 11/31 (35%)

Query: 242 AGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                ++        +  AAARG  E V  L
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQL 31

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  135 bits (341), Expect = 2e-37
 Identities = 48/254 (18%), Positives = 80/254 (31%), Gaps = 54/254 (21%)

Query: 57  RGALHFAAREGKTDVCKYLLEELKL-------DVDTQDEDGETPLLHAA---RQGHTETA 106
           R  L      G  +    LLE L+           T+   G+T L+ A    + G     
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 107 KYLFEHGANPTIPSNL-----------GATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
             L +   +   P  L           G +ALH +    +++ +  L+  GA+V   +  
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

Query: 156 G--------------TPLIWAAGHGQQEAVKVLLEHH---ANPNAETEDNITPLLSAVAA 198
                           PL  AA   Q + V  LLE+    A+  A      T L + V  
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI 182

Query: 199 GSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
              +                   + L I    G  ++   L        +++  G  P++
Sbjct: 183 ADNSP----------------ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK 226

Query: 259 VAAARGNREAVEIL 272
           +AA  G  E    +
Sbjct: 227 LAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  111 bits (278), Expect = 1e-28
 Identities = 43/218 (19%), Positives = 63/218 (28%), Gaps = 39/218 (17%)

Query: 25  GNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE----- 77
           G    +  + +   D G       A   D   +G  ALH A  +      K L+E     
Sbjct: 57  GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116

Query: 78  -------ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG---ANPTIPSNLGATAL 127
                    +    T    GE PL  AA     +   YL E+    A+     +LG T L
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176

Query: 128 HHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETED 187
           H    I +                 S   + L+     G  +    L             
Sbjct: 177 HALVMIAD----------------NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ 220

Query: 188 NITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLH 225
            +TPL  A   G +     ++Q   +      GA   H
Sbjct: 221 GLTPLKLAAKEGKIEIFRHILQREFS------GAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 89.1 bits (221), Expect = 1e-20
 Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 26/155 (16%)

Query: 21  AACTGNLD----LLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKY 74
           A    +L     L++  A  +  +  G              G   L  AA   + DV  Y
Sbjct: 97  AIEKRSLQCVKLLVENGA-DVHLRACG-RFFQKHQGTCFYFGELPLSLAACTKQWDVVTY 154

Query: 75  LLE--ELKLDVDTQDEDGETPL---------------LH-AARQGHTETAKYLFEHGANP 116
           LLE       ++  D  G T L               L      G  +    L       
Sbjct: 155 LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLE 214

Query: 117 TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
            I ++ G T L  +A  G IE+  ++L +     +
Sbjct: 215 EISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  130 bits (329), Expect = 3e-37
 Identities = 58/157 (36%), Positives = 79/157 (50%), Gaps = 33/157 (21%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           +G TPL  AAR GH E  K L E GA+       G T LH +A  G++E++  LL  GA+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207
           V+++   G TPL  AA +G  E VK+LLE  A+ NA+ ++                    
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-------------------- 100

Query: 208 IQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGA 244
                       G TPLH+AA  G  E++K LL+AGA
Sbjct: 101 ------------GRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  129 bits (326), Expect = 7e-37
 Identities = 55/122 (45%), Positives = 72/122 (59%), Gaps = 2/122 (1%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            LH AAR G  +V K LLE    DV+ +D++G TPL  AAR GH E  K L E GA+   
Sbjct: 5   PLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
               G T LH +A  G++E++  LL  GA+V+++   G TPL  AA +G  E VK+LLE 
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

Query: 178 HA 179
            A
Sbjct: 124 GA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  117 bits (295), Expect = 2e-32
 Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 1/117 (0%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI 216
           TPL  AA +G  E VK+LLE  A+ NA+ ++  TPL  A   G L  + LL++AGA+ N 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 217 VA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
               G TPLH+AA  G  E++K LL+AGAD N  D++G+ P+ +AA  G+ E V++L
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  104 bits (262), Expect = 1e-27
 Identities = 51/129 (39%), Positives = 68/129 (52%), Gaps = 14/129 (10%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+L+    + K L + G       AD+   +K G   LH AAR G  +V K LLE 
Sbjct: 9   AARNGHLE----VVKLLLEAG-------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              DV+ +D++G TPL  AAR GH E  K L E GA+       G T LH +A  G++E+
Sbjct: 58  -GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116

Query: 139 LTYLLSKGA 147
           +  LL  GA
Sbjct: 117 VKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 80.9 bits (201), Expect = 8e-19
 Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 1/87 (1%)

Query: 187 DNITPLLSAVAAGSLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGAD 245
           +  TPL  A   G L  + LL++AGA+ N     G TPLH+AA  G  E++K LL+AGAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 246 PNVTDEDGQKPIQVAAARGNREAVEIL 272
            N  D++G+ P+ +AA  G+ E V++L
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLL 87

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  129 bits (326), Expect = 1e-36
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 4/137 (2%)

Query: 49  ADI-KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK 107
            D   +      LH A+ +G     +YLL+    D + +D  G TPL  A   GH +  +
Sbjct: 2   IDPFTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 108 YLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG 166
            L +H A          + LH +A  G+++++  LLS GA  ++ +  G  P+ +     
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES 120

Query: 167 QQEAVKVLLEHHANPNA 183
            +  +  L E + + +A
Sbjct: 121 MKSLLL-LPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  126 bits (319), Expect = 1e-35
 Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 82  DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
           D  T +  GET L  A+ +G   + +YL ++G++P +  + G T LH +   G+++++  
Sbjct: 3   DPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 142 LLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS 200
           LL   A V++      +PL  AA +G  + VK+LL + A+ NA     + P+        
Sbjct: 62  LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESM 121

Query: 201 LTCLDLLIQAGAN 213
            + L L  +  ++
Sbjct: 122 KSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  121 bits (306), Expect = 9e-34
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 1/128 (0%)

Query: 146 GAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD 205
           G +  +     T L  A+  G   +V+ LL++ ++PN +     TPL  A   G L  ++
Sbjct: 1   GIDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 206 LLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
           LL+Q  A  N       +PLH AA  G  +I+K LL  GA  N  +  G +P+       
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES 120

Query: 265 NREAVEIL 272
            +  + + 
Sbjct: 121 MKSLLLLP 128

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  130 bits (327), Expect = 2e-34
 Identities = 42/289 (14%), Positives = 69/289 (23%), Gaps = 52/289 (17%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLL 76
             AA TG    L      L             +K        A   AA  G   V   L 
Sbjct: 97  FVAAITGCSSALD-TLCLLLTSD-------EIVKVIQAENYQAFRLAAENGHLHVLNRLC 148

Query: 77  EE-LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP--SNLGATALHHSAGI 133
           E      +     +       AA  GH      L E                A   +A  
Sbjct: 149 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG 208

Query: 134 -GNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNA--------- 183
            G+  ++ +LL     +               +G++     +  H               
Sbjct: 209 RGHHNVINFLLDCPVMLAYAEI------HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 262

Query: 184 -----------ETEDNITPLLSAVAAGSLTCLDLL--------IQAGANANIVAG-GATP 223
                      E       L + +       LD +        I+A A    + G     
Sbjct: 263 PDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 322

Query: 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           L +A  +G+      LL   +   +T  +      +    G  +   + 
Sbjct: 323 LRLALRLGNQGACALLLSIPSVLALTKANN---YYINETGGRLDLRAVA 368

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  100 bits (251), Expect = 6e-24
 Identities = 28/238 (11%), Positives = 63/238 (26%), Gaps = 26/238 (10%)

Query: 42  KGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQG 101
                   +++   +   L++A         K L  +       +    E     AA  G
Sbjct: 51  HIFLPGTKNMEQVRQLLCLYYAHYN---RNAKQLWSDA----HKKGIKSEVICFVAAITG 103

Query: 102 HT---ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV---DSESDA 155
            +   +T   L        +       A   +A  G++ +L  L            +++ 
Sbjct: 104 CSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN 163

Query: 156 GTPLIWAAGHGQQEAVKVLLEHHANPNAET---EDNITPLLSAVAAGSLTCLDLLIQAGA 212
                 AA +G    +  L E            E+      +AV  G    ++ L+    
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 213 NANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
                           + G   +   + +         ++     +++   G  + V 
Sbjct: 224 MLAY------AEIHEFEYGEKYVNPFIARHVNR----LKEMHDAFKLSNPDGVFDLVT 271

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 67.7 bits (165), Expect = 1e-12
 Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 22/147 (14%)

Query: 42  KGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQG 101
             +++ V  +K+ +   A   +  +G  D+              +   G   L +  R+ 
Sbjct: 242 PFIARHVNRLKEMHD--AFKLSNPDGVFDLVTKS----------ECLQGFYMLRNLIRRN 289

Query: 102 HT---ETAKYLF-----EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
                +  ++L      +  A            L  +  +GN      LLS  +      
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS--VLAL 347

Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHAN 180
                       G+ +   V LEHH +
Sbjct: 348 TKANNYYINETGGRLDLRAVALEHHHH 374

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 58.8 bits (142), Expect = 8e-10
 Identities = 20/147 (13%), Positives = 38/147 (25%), Gaps = 21/147 (14%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQG-----------KGLSKTVADIKDANKRGALHFAAREG 67
           ++    G   +   IA+ ++               G+   V   +       L    R  
Sbjct: 230 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN 289

Query: 68  KT---DVCKYLLEELKL----DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
                D  ++LL    +       T   D    L  A R G+      L    +   +  
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK 349

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGA 147
                  + +   G ++L    L    
Sbjct: 350 A---NNYYINETGGRLDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 14/96 (14%), Positives = 20/96 (20%), Gaps = 5/96 (5%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEEL 79
           N     +  LL    + L       +         +    L  A R G    C  LL   
Sbjct: 284 NLIRRNDEVLLD-DIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI- 341

Query: 80  KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGAN 115
                                G  +      EH  +
Sbjct: 342 ---PSVLALTKANNYYINETGGRLDLRAVALEHHHH 374

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 5/121 (4%)

Query: 152 ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG 211
              +   L       + EA+ + L    N     E     L    A  +     L   A 
Sbjct: 32  HFISANELSLMTLSYK-EAIHIFLPGTKN----MEQVRQLLCLYYAHYNRNAKQLWSDAH 86

Query: 212 ANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                         I     + + +  LL +     V   +  +  ++AA  G+   +  
Sbjct: 87  KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNR 146

Query: 272 L 272
           L
Sbjct: 147 L 147

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  126 bits (319), Expect = 3e-34
 Identities = 53/265 (20%), Positives = 85/265 (32%), Gaps = 57/265 (21%)

Query: 49  ADIKDANK--RGALHFAAREGKTDVCKYLLEELKL------DVDTQD-EDGETPLLHA-- 97
           A  K      R ++  A  +      + LL  L+       D + +D E G+T LL A  
Sbjct: 4   AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63

Query: 98  -ARQGHTETAKYLFEHGANPTIPSNL-----------GATALHHSAGIGNIELLTYLLSK 145
               G  +T   L +                      G TALH +    N+ L+T L+  
Sbjct: 64  NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123

Query: 146 GAEVDSESDAG---------------TPLIWAAGHGQQEAVKVLLEH---HANPNAETED 187
           GA+V + ++                  PL  AA   Q   VK LL++    A+ +A    
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV 183

Query: 188 NITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPN 247
             T L + V     T                   T    +       +   L        
Sbjct: 184 GNTVLHALVEVADNTV----------------DNTKFVTSMYNEILILGAKLHPTLKLEE 227

Query: 248 VTDEDGQKPIQVAAARGNREAVEIL 272
           +T+  G  P+ +AA+ G    +  +
Sbjct: 228 ITNRKGLTPLALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  117 bits (294), Expect = 1e-30
 Identities = 49/284 (17%), Positives = 78/284 (27%), Gaps = 65/284 (22%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI---KDANKRGALHFA---AREGKTDVC 72
            +A    N   L+ +   L    K L     D         +  L  A      G+ D  
Sbjct: 18  FDAVAQSNCQELESLLPFLQRSKKRL----TDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 73  KYLLEE----------LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
             LL+           +          G+T L  A  + +      L E+GA+    +N 
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG 133

Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEH---HA 179
                                              PL  AA   Q   VK LL++    A
Sbjct: 134 DFFKKTKGRPGFY------------------FGELPLSLAACTNQLAIVKFLLQNSWQPA 175

Query: 180 NPNAETEDNITPLLSAVAAGSLT---------CLDLLIQAGANANIVAG--------GAT 222
           + +A      T L + V     T           + ++  GA  +            G T
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235

Query: 223 PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNR 266
           PL +AA  G   ++  +L+             +    AA   + 
Sbjct: 236 PLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 79.4 bits (196), Expect = 5e-17
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 47/187 (25%)

Query: 112 HGANPTIPSNLGATALHHSAGIGN-------IELLTYLLSKGAEVDSESDAG--TPLIWA 162
             A    P      ++  +    N       +  L     +  + + +      T L+ A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 163 ---AGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG 219
                +GQ + + +LL+     ++                    L   + A    +    
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDS--------------------LKQFVNASYTDSYY-K 100

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDED--------------GQKPIQVAAARGN 265
           G T LHIA +  +  ++  L++ GAD                     G+ P+ +AA    
Sbjct: 101 GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160

Query: 266 REAVEIL 272
              V+ L
Sbjct: 161 LAIVKFL 167

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  119 bits (301), Expect = 3e-33
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 1/114 (0%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
             +   + A + G  +  K     G +       G   LH++A  G +E+L +LL KGA+
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL 201
           +++      TPL+ A   G    VK+LL   A+   +  D +T   +       
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK 119

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  114 bits (289), Expect = 2e-31
 Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA 212
           S      +WA  +G  + VK  +    + N   E    PL  A   G L  L+ L+  GA
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 213 NANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
           + N       TPL  A   G    +K LL  GAD  V   DG    +    +  +  ++
Sbjct: 65  DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  114 bits (288), Expect = 3e-31
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 2/115 (1%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
              +A + G  D  K  + +   DV+   E G  PL +AA  G  E  ++L   GA+   
Sbjct: 10  EFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVK 172
           P     T L  +   G++  +  LLSKGA+   +   G T          +  ++
Sbjct: 69  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  112 bits (284), Expect = 9e-31
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
           ++       +   G+++ +   ++KG +V+   + G  PL +AA  GQ E ++ LL   A
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIK 237
           + NA  + +ITPLLSAV  G ++C+ LL+  GA+  +    G T      +     +++
Sbjct: 65  DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 97.1 bits (243), Expect = 6e-25
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 14/121 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           A   G+LD      K    +G        D+    + G   LH+AA  G+ ++ ++LL +
Sbjct: 14  ALKNGDLD----EVKDYVAKG-------EDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              D++  D+   TPLL A  +GH    K L   GA+ T+    G TA   +       L
Sbjct: 63  -GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121

Query: 139 L 139
           L
Sbjct: 122 L 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 64.0 bits (157), Expect = 6e-13
 Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 14/90 (15%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE 77
            AA  G L+    I + L  +G       ADI   +K     L  A  EG     K LL 
Sbjct: 46  YAADCGQLE----ILEFLLLKG-------ADINAPDKHHITPLLSAVYEGHVSCVKLLLS 94

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAK 107
           +   D   +  DG T       Q      +
Sbjct: 95  K-GADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 63.6 bits (156), Expect = 9e-13
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                  A   G  + +K  +  G D N T E G+KP+  AA  G  E +E L
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  118 bits (298), Expect = 1e-32
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 48  VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK 107
                 ++    L  AAR G+ D  + L+     DV+ +DE G TPL  A   GH E  +
Sbjct: 6   HHHHHGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVE 64

Query: 108 YLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG 166
            L ++GA+      +G T LH +A IG++E+   LL  GA+V+++   G T    + G+G
Sbjct: 65  VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124

Query: 167 QQEAVKVLLEHH 178
            ++  ++L + +
Sbjct: 125 NEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  117 bits (297), Expect = 2e-32
 Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 3/131 (2%)

Query: 145 KGAEVDSE--SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT 202
           +G+       SD G  L+ AA  GQ + V++L+ + A+ NA+ E  +TPL  A A G L 
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 203 CLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
            +++L++ GA+ N V A G TPLH+AA IG  EI + LLK GAD N  D+ G+    ++ 
Sbjct: 62  IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121

Query: 262 ARGNREAVEIL 272
             GN +  EIL
Sbjct: 122 GNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  116 bits (294), Expect = 6e-32
 Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 33/154 (21%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           D    LL AAR G  +  + L  +GA+       G T L+ +   G++E++  LL  GA+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207
           V++    G TPL  AA  G  E  +VLL+H A+ NA+ +                     
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF-------------------- 112

Query: 208 IQAGANANIVAGGATPLHIAADIGSTEIIKCLLK 241
                       G T   I+   G+ ++ + L K
Sbjct: 113 ------------GKTAFDISIGNGNEDLAEILQK 134

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  122 bits (306), Expect = 7e-32
 Identities = 48/233 (20%), Positives = 81/233 (34%), Gaps = 23/233 (9%)

Query: 52  KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ-DEDGETPLLHAARQGHTETAKYLF 110
           +  +        + +             +L+++   DE G TPL       + E  K+L 
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 111 EHGANPTIPSNLGATALHHSAGIGNI-------ELLTYLLSKGAEVDS----------ES 153
           +HG+N     N+G + L  +    N         LL YL       DS           +
Sbjct: 152 KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIIT 211

Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC----LDLLIQ 209
              T    AA +     +  +++    P     +      +             LDL   
Sbjct: 212 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 271

Query: 210 AGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
                N   + G T L+IAA +G+  I+  LL  GADP + ++ G +P+   A
Sbjct: 272 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 92.4 bits (229), Expect = 3e-21
 Identities = 34/194 (17%), Positives = 60/194 (30%), Gaps = 33/194 (17%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREG---KTDVCKYL 75
                NL+    + K L   G       ++    +  G   L  A +      +   + L
Sbjct: 138 LTSIANLE----LVKHLVKHG-------SNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 186

Query: 76  LEELKLDVDTQDEDGETPLLHAARQ----GHTETAKYLFE--------HGANPTIPSNLG 123
           L+ L   +  +D    T L H        G +  AKY  +            P       
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE 246

Query: 124 ATALHHSAGIGN----IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
             +  +          +E L         ++++   G T L  AA  G    V  LL++ 
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306

Query: 179 ANPNAETEDNITPL 192
           A+P    +  + P+
Sbjct: 307 ADPFIANKSGLRPV 320

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 71.2 bits (174), Expect = 6e-14
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 2/117 (1%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYL--L 76
           + +  TG     K     L                  K    +    E K  + + L   
Sbjct: 210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 269

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI 133
             +   ++ QD +G+T L  AAR G+      L ++GA+P I +  G   +   AG+
Sbjct: 270 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.9 bits (168), Expect = 3e-13
 Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 15/168 (8%)

Query: 113 GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV------------DSESDAGTPLI 160
             +                     +L +  LS   ++            + +      L 
Sbjct: 9   SGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQ 68

Query: 161 WAAGHGQQEAVKVLLEHHANPNAETEDNITPLL-SAVAAGSLTCLDLLIQAGANANIVA- 218
                  QE    L    +N N+E   +       +  +      D       N NI   
Sbjct: 69  RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVD 128

Query: 219 -GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265
             G TPLH    I + E++K L+K G++    D  G+  +  A    N
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN 176

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 3/97 (3%)

Query: 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN--IVAGGATPLHIAADIGSTEII 236
            N N +       L   +          L    +N N    +      H++ D    E+ 
Sbjct: 54  VNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVN 113

Query: 237 KCLLKAGADPNV-TDEDGQKPIQVAAARGNREAVEIL 272
                   + N+  DE G  P+    +  N E V+ L
Sbjct: 114 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL 150

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  118 bits (297), Expect = 3e-31
 Identities = 45/275 (16%), Positives = 71/275 (25%), Gaps = 64/275 (23%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG------ALHFAA---REGKT 69
            +    G+ D L+ +   L             + D   R        L  A      G+ 
Sbjct: 10  FDIVSRGSPDGLEGLLSFLLTHK-------KRLTDEEFREPSTGKTCLPKALLNLSAGRN 62

Query: 70  DVCKYLLEELKLDVDTQ----------DEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           D    LL+  +   + +             G+T L  A  +      + L E GA+    
Sbjct: 63  DTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ 122

Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEH-- 177
           +           G                         PL  AA   Q   V  L E+  
Sbjct: 123 ARGRFFQPKDEGGYFY------------------FGELPLSLAACTNQPHIVHYLTENGH 164

Query: 178 -HANPNAETEDNITPLLSAVAAGS---------LTCLDLLIQAGANANIVAG-------- 219
             A+   +     T L + VA                DLL+   A               
Sbjct: 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND 224

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ 254
           G +PL +AA  G   I + +++             
Sbjct: 225 GLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  107 bits (268), Expect = 4e-27
 Identities = 46/264 (17%), Positives = 71/264 (26%), Gaps = 73/264 (27%)

Query: 57  RGALHFAAREGKT----DVCKYLLE---ELKLDVDTQDEDGETPLLHAA---RQGHTETA 106
           R  L      G       +  +LL     L  +   +   G+T L  A      G  +T 
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 107 KYLFEHGANPTIPSNL-----------GATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
             L +                      G TALH +        +  L+ KGA+V +++  
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125

Query: 156 G---------------TPLIWAAGHGQQEAVKVLLEH---HANPNAETEDNITPLLSAVA 197
                            PL  AA   Q   V  L E+    A+   +     T L + VA
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA 185

Query: 198 AGS---------LTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNV 248
                           DLL+   A                                   +
Sbjct: 186 IADNTRENTKFVTKMYDLLLIKCAKLF-------------------------PDTNLEAL 220

Query: 249 TDEDGQKPIQVAAARGNREAVEIL 272
            + DG  P+ +AA  G     + +
Sbjct: 221 LNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 25/126 (19%), Positives = 37/126 (29%), Gaps = 29/126 (23%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGK---------T 69
           AACT        I   L + G       AD++  + RG   LH                T
Sbjct: 147 AACTNQPH----IVHYLTENGH----KQADLRRQDSRGNTVLHALVAIADNTRENTKFVT 198

Query: 70  DVCKYLLE------ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
            +   LL                + DG +PL+ AA+ G     +++              
Sbjct: 199 KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD----AAA 254

Query: 124 ATALHH 129
               HH
Sbjct: 255 HHHHHH 260

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  106 bits (268), Expect = 2e-28
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
                 +    LH AA+ G  +  K LL +   DV+ + +DG TPL  AA+ GH E  K 
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPL 159
           L   GA+    S  G T  H +   G+ E++  L +KGA+V++ S       
Sbjct: 61  LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  102 bits (257), Expect = 7e-27
 Identities = 45/173 (26%), Positives = 56/173 (32%), Gaps = 64/173 (36%)

Query: 84  DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
               +DG TPL +AA+ GH E  K L   GA+    S  G T LH               
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLH--------------- 47

Query: 144 SKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203
                             AA +G  E VK+LL   A+ NA ++D                
Sbjct: 48  -----------------LAAKNGHAEIVKLLLAKGADVNARSKD---------------- 74

Query: 204 LDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP 256
                           G TP H+A   G  EI+K L   GAD N         
Sbjct: 75  ----------------GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 94.4 bits (236), Expect = 6e-24
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 14/111 (12%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+ +      K+L  +G       AD+   +K G   LH AA+ G  ++ K LL +
Sbjct: 16  AAKNGHAE----EVKKLLSKG-------ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHH 129
              DV+ + +DG TP   A + GH E  K L   GA+    S   +   HH
Sbjct: 65  -GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 86.7 bits (216), Expect = 4e-21
 Identities = 43/127 (33%), Positives = 55/127 (43%), Gaps = 33/127 (25%)

Query: 146 GAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD 205
           G    S+ D  TPL  AA +G  E VK LL   A+ NA ++D                  
Sbjct: 1   GHMWGSK-DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD------------------ 41

Query: 206 LLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265
                         G TPLH+AA  G  EI+K LL  GAD N   +DG  P  +A   G+
Sbjct: 42  --------------GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH 87

Query: 266 REAVEIL 272
            E V++L
Sbjct: 88  HEIVKLL 94

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  102 bits (256), Expect = 5e-27
 Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           +G TPL  AAR GH E  K L E GA+       G T LH +A  G++E++  LL  GA+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
           V+++   G TPL  AA +G  E VK+LLE  A
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 95.5 bits (239), Expect = 1e-24
 Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            LH AAR G  +V K LLE    DV+ +D++G TPL  AAR GH E  K L E GA+   
Sbjct: 5   PLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGA 147
               G T LH +A  G++E++  LL  GA
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 90.1 bits (225), Expect = 1e-22
 Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 1/89 (1%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI 216
           TPL  AA +G  E VK+LLE  A+ NA+ ++  TPL  A   G L  + LL++AGA+ N 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 217 V-AGGATPLHIAADIGSTEIIKCLLKAGA 244
               G TPLH+AA  G  E++K LL+AGA
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 80.5 bits (200), Expect = 3e-19
 Identities = 40/96 (41%), Positives = 51/96 (53%), Gaps = 14/96 (14%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+L+    + K L + G       AD+   +K G   LH AAR G  +V K LLE 
Sbjct: 9   AARNGHLE----VVKLLLEAG-------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
              DV+ +D++G TPL  AAR GH E  K L E GA
Sbjct: 58  -GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.8 bits (162), Expect = 6e-14
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           G TPLH+AA  G  E++K LL+AGAD N  D++G+ P+ +AA  G+ E V++L
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 97.3 bits (243), Expect = 4e-25
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
            +          L+      +     D    LL AAR G  +  + L  +GA+       
Sbjct: 1   GSSHHHHHHSSGLVPR-GSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
           G+T LH +A  G++E++  LL  GA+V ++   G T    +  +G ++  ++L
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 96.9 bits (242), Expect = 7e-25
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 34/139 (24%)

Query: 134 GNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLL 193
            +    + L+ +G+ + S  D G  L+ AA  GQ + V++L+ + A+  A+ ++      
Sbjct: 5   HHHHHSSGLVPRGSHMGS--DLGKKLLEAARAGQDDEVRILMANGADVAAKDKN------ 56

Query: 194 SAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDG 253
                                     G+TPLH+AA  G  E++K LL+AGAD    D+ G
Sbjct: 57  --------------------------GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90

Query: 254 QKPIQVAAARGNREAVEIL 272
           +    ++   GN +  EIL
Sbjct: 91  KTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 93.0 bits (232), Expect = 2e-23
 Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
            +   +       +  L  +G       + +  ++    L  AAR G+ D  + L+    
Sbjct: 1   GSSHHHHH----HSSGLVPRG-------SHM-GSDLGKKLLEAARAGQDDEVRILMAN-G 47

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
            DV  +D++G TPL  AAR GH E  K L E GA+       G TA   S   GN +L  
Sbjct: 48  ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107

Query: 141 YL 142
            L
Sbjct: 108 IL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 195 AVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ 254
             +         L+  G++    +     L  AA  G  + ++ L+  GAD    D++G 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG--SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS 58

Query: 255 KPIQVAAARGNREAVEIL 272
            P+ +AA  G+ E V++L
Sbjct: 59  TPLHLAARNGHLEVVKLL 76

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 87.9 bits (217), Expect = 2e-19
 Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 3/126 (2%)

Query: 150 DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNA--ETEDNITPLLSAVAAGSLTCLDLL 207
            S          +        +   L H A+ N     +DN TPL+ A AA SL   + L
Sbjct: 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFL 254

Query: 208 IQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNR 266
           +Q GAN N   + G  PLH A  +G T +    LK GAD    D +G+ P+ +A    N 
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314

Query: 267 EAVEIL 272
           + V +L
Sbjct: 315 DIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 72.9 bits (178), Expect = 2e-14
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 4/157 (2%)

Query: 99  RQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD---SESDA 155
            +    + +   E  +      + GA     S    ++  +   L+ GA+V+      D 
Sbjct: 176 IRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDN 235

Query: 156 GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN 215
            TPLI A       A + LL++ AN N        PL  A   G      L ++ GA+  
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295

Query: 216 IV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
              + G  PL IA +  + +I+  L  A        +
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ 332

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 72.9 bits (178), Expect = 2e-14
 Identities = 33/149 (22%), Positives = 46/149 (30%), Gaps = 3/149 (2%)

Query: 85  TQDEDGETPLLHAARQGHTETAKYLFEHGA--NPTIPSNLGATALHHSAGIGNIELLTYL 142
                G      +       T      HGA  N        AT L  +    ++    +L
Sbjct: 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFL 254

Query: 143 LSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL 201
           L  GA V+    AG  PL  A   G      + L+  A+  A   +   PL  A+   + 
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314

Query: 202 TCLDLLIQAGANANIVAGGATPLHIAADI 230
             + LL  A       A G        DI
Sbjct: 315 DIVTLLRLAKMREAEAAQGQAGDETYLDI 343

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.3 bits (135), Expect = 5e-09
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 2/106 (1%)

Query: 53  DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH 112
             +    L  A        C++LL+    +V+  D  G  PL HA   GHT  A    + 
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290

Query: 113 GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTP 158
           GA+     + G   L  +    N +++T LL      ++E+  G  
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVT-LLRLAKMREAEAAQGQA 335

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 82.4 bits (203), Expect = 5e-18
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 175 LEHHANPNAETEDNITPLLSAVAAGSLTCL---DLLIQAGANANIV-AGGATPLHIAADI 230
           L          E + T L  AV +   T L   D L+Q   N +     G+T LH     
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215

Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPK 284
            + E +K LL+  A   + +E G+ P+ +A    +    E+L    S   +   
Sbjct: 216 DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHV 269

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 75.8 bits (186), Expect = 1e-15
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 72  CKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL------GAT 125
            KY+                  L  A +          +  G + T    L        T
Sbjct: 112 AKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDET 171

Query: 126 ALHHSAGIGN---IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
           ALH +    +   + ++ +L+     +D ++  G T L +       E +K+LL   A+ 
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231

Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQAGAN 213
               E   TPL  A       C +LL QA + 
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 69.3 bits (169), Expect = 1e-13
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 12/150 (8%)

Query: 105 TAKYLFEHGANP-TIPSNLGATALHHSAGIGNIELLTYLLSKGAEV-------DSESDAG 156
           TAKY+    A      +     +L  +    +I  L    + G ++       +      
Sbjct: 111 TAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDE 170

Query: 157 TPLIWAAGHGQQEAVKV---LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN 213
           T L  A     + ++ +   L+++  N + +T    T L       +  CL LL++  A+
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 214 ANIV-AGGATPLHIAADIGSTEIIKCLLKA 242
             I    G TPL IA  +      + L +A
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 65.4 bits (159), Expect = 3e-12
 Identities = 24/134 (17%), Positives = 41/134 (30%), Gaps = 5/134 (3%)

Query: 12  RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDV 71
             ++     A  T ++  L +      D  + +              ALH A R      
Sbjct: 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGH---EPDETALHLAVRSVDRTS 184

Query: 72  CKY--LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHH 129
                 L +   ++D Q   G T L +     + E  K L    A+  I +  G T L  
Sbjct: 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 244

Query: 130 SAGIGNIELLTYLL 143
           +  + +      L 
Sbjct: 245 AKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D +      ALH+       +  K LL   K  ++  +E GETPL  A R  H    + L
Sbjct: 199 DKQTGKGSTALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELL 257

Query: 110 FEHGAN 115
            +  + 
Sbjct: 258 TQALSG 263

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 82.3 bits (203), Expect = 8e-18
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 149 VDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAE------TEDNITPLLSAVAAGSLT 202
               +     L  A  +    +V     +  +                 L  AV   +  
Sbjct: 145 ARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA 204

Query: 203 CL---DLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
            L   D +IQ G + +   A G T LH AA     + +K LLK  A     +E G+  + 
Sbjct: 205 SLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 264

Query: 259 VAAARGNREAVEIL 272
           +A  + ++E  E+L
Sbjct: 265 IARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 73.9 bits (181), Expect = 5e-15
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 14/151 (9%)

Query: 73  KYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL------GATA 126
           KY+          + +     L  A       +    F +G +   P             
Sbjct: 138 KYVEHRFARRCTPEPQ----RLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELV 193

Query: 127 LHHSAGIGN---IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN 182
           LH +  + N   + L+ +++  G  +D+++  G T L +AA + Q + +K+LL+  A   
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253

Query: 183 AETEDNITPLLSAVAAGSLTCLDLLIQAGAN 213
              E   T L  A       C +LL QA A 
Sbjct: 254 TVNEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 14/151 (9%)

Query: 106 AKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV-------DSESDAGTP 158
           AKY+    A    P       L  +    ++  +    + G +        D+++     
Sbjct: 137 AKYVEHRFARRCTPE---PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELV 193

Query: 159 L---IWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN 215
           L   +  A       V  ++++  + +A+  D  T L  A       CL LL++  A   
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253

Query: 216 IV-AGGATPLHIAADIGSTEIIKCLLKAGAD 245
            V   G T L IA      E  + L +A A 
Sbjct: 254 TVNEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 62.3 bits (151), Expect = 4e-11
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 57  RGALHFAAREGKTDVCKYLLEELKL---DVDTQDEDGETPLLHAARQGHTETAKYLFEHG 113
              LH A +         L++ +      +D +  DG T L +AA     +  K L +  
Sbjct: 191 ELVLHLAVKVANQ-ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249

Query: 114 ANPTIPSNLGATALHHSAGIGNIELLTYL 142
           A     +  G TAL  +    + E    L
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELL 278

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 74.2 bits (182), Expect = 1e-14
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 149 VDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAE------TEDNITPLLSAVAA---G 199
               +     L  A  +    +V     +  +                 L  AV      
Sbjct: 126 ARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA 185

Query: 200 SLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
           SL  +D +IQ G + +   A G T LH AA     + +K LLK  A     +E G+  + 
Sbjct: 186 SLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 245

Query: 259 VAAARGNREAVEIL 272
           +A  + ++E  E+L
Sbjct: 246 IARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 10/127 (7%)

Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNL------GATALHHS---AGIGNIELLTYLLS 144
           L  A       +    F +G +   P             LH +   A   ++ L+ +++ 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 145 KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203
            G  +D+++  G T L +AA + Q + +K+LL+  A      E   T L  A       C
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255

Query: 204 LDLLIQA 210
            +LL QA
Sbjct: 256 EELLEQA 262

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 56.1 bits (135), Expect = 8e-09
 Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 5/129 (3%)

Query: 16  QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTD--VCK 73
           Q+   A C  +L  + +      D G+ L    A    A +   LH A +          
Sbjct: 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQ---APEELVLHLAVKVANQASLPLV 190

Query: 74  YLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI 133
             + +    +D +  DG T L +AA     +  K L +  A     +  G TAL  +   
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250

Query: 134 GNIELLTYL 142
            + E    L
Sbjct: 251 HHKECEELL 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 5e-07
 Identities = 47/326 (14%), Positives = 80/326 (24%), Gaps = 107/326 (32%)

Query: 70  DVCKYLLEELKLDVDTQD-EDGETPLL------HAARQGHTETAKYLFEHGANPTIPSNL 122
           D+     +    + D +D +D    +L      H        +                 
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR------------- 66

Query: 123 GATALHHSAGIGNIELLTYLLSKGAE-----VDSESDAGTPLIWAAGHGQQEAVKVLLEH 177
                          L   LLSK  E     V+         + +    +Q         
Sbjct: 67  ---------------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------- 104

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIK 237
              P+  T   I               D L     N N V       +++      ++ +
Sbjct: 105 ---PSMMTRMYIE------------QRDRL----YNDNQVF---AKYNVSRLQPYLKLRQ 142

Query: 238 CLLKAGADPNVTDEDGQ----KPIQVAAARGNR-EAVEILFP-----LTSEDPSIPKWTV 287
            LL+     NV   DG     K     A        V+         L  ++ + P    
Sbjct: 143 ALLELRPAKNVL-IDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP---- 195

Query: 288 DGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQ 347
           + +LE +Q            L     P          +    IK +    +A      K 
Sbjct: 196 ETVLEMLQ-----------KLLYQIDP----NWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 348 KDY---LMAVDAYTQVCYSSVLCHFD 370
           K Y   L+ +     V  +     F+
Sbjct: 241 KPYENCLLVLL---NVQNAKAWNAFN 263

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 311 NNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           ++      P    P           + +  G+E FK  DY  A+ AYTQ
Sbjct: 5   SSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQ 53

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
            + A E K +G+E FK+ DY  A+  Y +
Sbjct: 10  PELAQEEKNKGNEYFKKGDYPTAMRHYNE 38

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 320 MKELPEVRPEI-KKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           M         +    A   K +G+E F++ DY  A+  YT+
Sbjct: 1   MGHHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTE 41

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           P    E   +A   K  G+E  K +++  AV  Y +
Sbjct: 2   PLGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGK 37

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
               K+A E K + ++ FK KDY  A+  Y+Q
Sbjct: 7   DGALKRAEELKTQANDYFKAKDYENAIKFYSQ 38

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 6/28 (21%), Positives = 15/28 (53%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           ++  E K +G++A    +   A+  Y++
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSE 29

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 328 PEIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQ 359
           P +K  +A+  K +G+  F  + Y  A   Y +
Sbjct: 2   PHMKSPSAQELKEQGNRLFVGRKYPEAAACYGR 34

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
                ++ + K+ G+ A  +K+Y  A+D YTQ
Sbjct: 5   MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQ 36

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 333 KAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           KA EA+  G E F + D+  AV AYT+
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTE 29

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
            +  + K +G+  FKQ  Y  AV  Y Q
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQ 29

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.4 bits (91), Expect = 8e-04
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 275 LTSEDPSIPKW--TVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPE-IK 331
           LT E  SI KW       L+ + + S    +E R      A KD   ++E  + + E ++
Sbjct: 80  LTQEPESIRKWREEQRKRLQELDAASKVMEQEWRE----KAKKD---LEEWNQRQSEQVE 132

Query: 332 KKAAEAKARGDEAFKQK 348
           K     +   D+AF Q+
Sbjct: 133 KNKINNRIA-DKAFYQQ 148

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
             A E K +G+  F  + Y  A   Y +
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGR 29

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.98
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	83.28

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-46  Score=333.61  Aligned_cols=260  Identities=25%  Similarity=0.363  Sum_probs=241.8

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCC
Q 016683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE   91 (384)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   91 (384)
                      .++.++|+.|++.|++++|++|++.    |.++    ....+..|.||||+|+..|+.+++++|++. |++++..+..|.
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~----g~~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~   73 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEG----GANV----NFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGA   73 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHT----TCCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCC
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHc----CCCc----ccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCC
Confidence            4677899999999999999999987    3332    122377899999999999999999999998 999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC----------C-CCCCHhH
Q 016683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE----------S-DAGTPLI  160 (384)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~----------~-~~~~~l~  160 (384)
                      ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..          + .+.||||
T Consensus        74 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~  153 (285)
T 1wdy_A           74 TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  153 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHH
Confidence            9999999999999999999999999999999999999999999999999999999998765          2 3449999


Q ss_pred             HHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHH
Q 016683          161 WAAGHGQQEAVKVLLEH-HANPNAETEDNITPLLSAVAAGS----LTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE  234 (384)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~  234 (384)
                      +|+..|+.+++++|++. |++++..+..|.||||.|+..++    .+++++|+++|++++.. ..|.||||+|+..|+.+
T Consensus       154 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  233 (285)
T 1wdy_A          154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG  233 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            99999999999999997 99999999999999999999999    99999999999999987 78999999999999999


Q ss_pred             HHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCC
Q 016683          235 IIKCLLK-AGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP  280 (384)
Q Consensus       235 ~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  280 (384)
                      ++++|++ .|++++.+|..|.||||+|+..|+.+++++|++++....
T Consensus       234 ~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             HHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence            9999999 899999999999999999999999999999999887543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.5e-47  Score=338.86  Aligned_cols=270  Identities=23%  Similarity=0.270  Sum_probs=218.2

Q ss_pred             chhhhhhhHHHHHHHHHHHcCChHHHHHHHHHhhhcC--CCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 016683            5 ASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQG--KGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLD   82 (384)
Q Consensus         5 ~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~   82 (384)
                      ..+.-+...+.+.||.|+..|+.+.+..++.......  ..+.......+|..|.||||+|+..|+.+++++|++. |++
T Consensus         6 ~~~~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~   84 (285)
T 3d9h_A            6 HHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWA   84 (285)
T ss_dssp             ------------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             ccccccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC-CCC
Confidence            3455677888999999999999988888776533211  1122233466889999999999999999999999997 999


Q ss_pred             CcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHH
Q 016683           83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWA  162 (384)
Q Consensus        83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A  162 (384)
                      ++.+|..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++....+.||||+|
T Consensus        85 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A  164 (285)
T 3d9h_A           85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEA  164 (285)
T ss_dssp             SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998887777999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCchHHHHHHhhCCHHHHHHHHHC
Q 016683          163 AGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKA  242 (384)
Q Consensus       163 ~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  242 (384)
                      +..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++....|.||||+|+..|+.+++++|+++
T Consensus       165 ~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  244 (285)
T 3d9h_A          165 ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDF  244 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999778899999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 016683          243 GADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (384)
Q Consensus       243 ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (384)
                      |++++.+|..|+||||+|+  ++.+++++|++...
T Consensus       245 gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~  277 (285)
T 3d9h_A          245 GADTQAKNAEGKRPVELVP--PESPLAQLFLEREG  277 (285)
T ss_dssp             TCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-
T ss_pred             CCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhc
Confidence            9999999999999999999  55799999998744

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-45  Score=348.28  Aligned_cols=294  Identities=31%  Similarity=0.455  Sum_probs=236.8

Q ss_pred             hhhhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCC
Q 016683            9 LAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDE   88 (384)
Q Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~   88 (384)
                      .....+.++||.||..|++++|++|++.    |.++     +..+..|.||||+|+..|+.+++++|++. |++++.++.
T Consensus         9 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~----g~~~-----~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~   78 (437)
T 1n11_A            9 GGGESGLTPLHVASFMGHLPIVKNLLQR----GASP-----NVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAK   78 (437)
T ss_dssp             ------CCHHHHHHHHTCHHHHHHHHHT----TCCS-----CCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCT
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHc----CCCC-----CCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCC
Confidence            3445667899999999999999999987    4433     45678899999999999999999999998 999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCC
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ  167 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~  167 (384)
                      .|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++++.+.+..+..+ ||||+|+..|+
T Consensus        79 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~  158 (437)
T 1n11_A           79 DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK  158 (437)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999988877655544 89999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCC
Q 016683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADP  246 (384)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  246 (384)
                      .+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|++.|+++
T Consensus       159 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  238 (437)
T 1n11_A          159 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA  238 (437)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999888888999999999999999999999888888766 67888888888888888888888888888


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhHHHHHhhhhcCCCC
Q 016683          247 NVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPK  315 (384)
Q Consensus       247 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (384)
                      +..+..|.||||+|+..|+.+++++|++.+..... .+..+  .+.+..+......+..+.+.+.+...
T Consensus       239 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g--~t~L~~A~~~~~~~~~~~Ll~~g~~~  304 (437)
T 1n11_A          239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSG--LTPLHLVAQEGHVPVADVLIKHGVMV  304 (437)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTC--CCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCC-CCCCC--CCHHHHHHHcCCHHHHHHHHhCCccC
Confidence            88888888888888888888888888876554322 22222  22233333334444555555544433

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1e-44  Score=343.25  Aligned_cols=251  Identities=32%  Similarity=0.447  Sum_probs=113.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHH
Q 016683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL   95 (384)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   95 (384)
                      ++||.|+..|+.+++++|++.    |.++     +.++..|.||||+|+..|+.+++++|++. |++++..+..|.||||
T Consensus        49 t~L~~A~~~g~~~~v~~Ll~~----g~~~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~  118 (437)
T 1n11_A           49 TPLHMAARAGHTEVAKYLLQN----KAKV-----NAKAKDDQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPLH  118 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHH----TCCS-----SCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhC----CCCC-----CCCCCCCCCHHHHHHHCCCHHHHHHHHhC-CCCCCCCCCCCCcHHH
Confidence            455555555555555555554    2221     23344455555555555555555555544 4444444444444444


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC----------------------
Q 016683           96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES----------------------  153 (384)
Q Consensus        96 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~----------------------  153 (384)
                      +|+..|+.++|++|++++++.+..+..|.||||+|+..|+.+++++|+++|++++..+                      
T Consensus       119 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  198 (437)
T 1n11_A          119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL  198 (437)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4444444444444444444433333333333333333333333333333333333222                      


Q ss_pred             -----------CCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCC
Q 016683          154 -----------DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGG  220 (384)
Q Consensus       154 -----------~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g  220 (384)
                                 ..+ ||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|
T Consensus       199 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g  278 (437)
T 1n11_A          199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG  278 (437)
T ss_dssp             GGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTC
T ss_pred             HhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCC
Confidence                       111 3444444444444444444444444444444444444444444444444444444444433 334


Q ss_pred             chHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 016683          221 ATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (384)
Q Consensus       221 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (384)
                      .||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++
T Consensus       279 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  334 (437)
T 1n11_A          279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ  334 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC
Confidence            44444444444444444444444444444444555555555555555555555443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4.9e-44  Score=327.11  Aligned_cols=289  Identities=24%  Similarity=0.336  Sum_probs=255.7

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhccc-CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCC
Q 016683           11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKD-ANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDED   89 (384)
Q Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~   89 (384)
                      ..++.++||.||+.|++++|++|++.    |.++     +.++ ..|.||||+||..|+.++|++|++. |++++..+..
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~----Gadv-----n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~   91 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEG----GANV-----NFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKN   91 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH----TCCT-----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHC----CCCC-----CccCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhhccC
Confidence            34567899999999999999999998    5554     3444 4599999999999999999999998 9999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-----------CCCCH
Q 016683           90 GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-----------DAGTP  158 (384)
Q Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-----------~~~~~  158 (384)
                      +.++++.++..+...++..+++.+++++..|..|.||||+|+..|+.+++++|+++|++++...           .+.||
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~  171 (337)
T 4g8k_A           92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA  171 (337)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred             CCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcH
Confidence            9999999999999999999999999999999999999999999999999999999999876432           23499


Q ss_pred             hHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCcccc-CCCchHHHHHHhhCC
Q 016683          159 LIWAAGHGQQEAVKVLLE-HHANPNAETEDNITPLLSAVAAGS----LTCLDLLIQAGANANIV-AGGATPLHIAADIGS  232 (384)
Q Consensus       159 l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~  232 (384)
                      ||+|+..|+.+++++|++ .|++++..+..|.|+++.++..+.    ..++++|+++|++++.. ..|+||||+|+..|+
T Consensus       172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~  251 (337)
T 4g8k_A          172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH  251 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence            999999999999999995 699999999999999998886544    46889999999999987 789999999999999


Q ss_pred             HHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhHHHHHhhhhc
Q 016683          233 TEIIKCLLKA-GADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKEN  311 (384)
Q Consensus       233 ~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  311 (384)
                      .+++++|++. |++++.+|..|+||||+|+.+|+.++|++|++++......      +  .+..+......+.++.|++.
T Consensus       252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~------~--~L~~A~~~~~~~iv~~Ll~~  323 (337)
T 4g8k_A          252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG------D--LVMTARRNYDHSLVKVLLSH  323 (337)
T ss_dssp             HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC------C--HHHHHHHTTCHHHHHHHHHT
T ss_pred             hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC------C--HHHHHHHcCCHHHHHHHHHC
Confidence            9999999985 8999999999999999999999999999999988653221      1  45556666778889999999


Q ss_pred             CCCCCC
Q 016683          312 NAPKDK  317 (384)
Q Consensus       312 ~~~~~~  317 (384)
                      ++..+-
T Consensus       324 GA~~d~  329 (337)
T 4g8k_A          324 GAKEDF  329 (337)
T ss_dssp             TCCC--
T ss_pred             cCCCCC
Confidence            987763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=8.2e-45  Score=333.56  Aligned_cols=282  Identities=28%  Similarity=0.345  Sum_probs=232.0

Q ss_pred             CCchhhhhhhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 016683            3 PDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLD   82 (384)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~   82 (384)
                      |.+..........++||.||+.|+.+.|++++..        .....+.+|..|.||||+|+..|+.+++++|++. |++
T Consensus        13 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~--------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~   83 (351)
T 3utm_A           13 PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTP--------LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GAD   83 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCT--------TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             CceeeeeeccccchhHHHHHHcCCHHHHHHHHHh--------cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence            3444555667788999999999999999999875        1223466788999999999999999999999998 999


Q ss_pred             CcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHH
Q 016683           83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIW  161 (384)
Q Consensus        83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~  161 (384)
                      ++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..+ +|+++
T Consensus        84 ~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~  163 (351)
T 3utm_A           84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM  163 (351)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988766544 55443


Q ss_pred             ---------------------HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCcccc
Q 016683          162 ---------------------AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA---GSLTCLDLLIQAGANANIV  217 (384)
Q Consensus       162 ---------------------A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~---~~~~~v~~Ll~~g~~~~~~  217 (384)
                                           ++..++.+.++.++..+......+..|.||||+|+..   +..+++++|++.|++++..
T Consensus       164 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~  243 (351)
T 3utm_A          164 APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK  243 (351)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCC
T ss_pred             HhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCc
Confidence                                 4566677777777776665556677788888888887   4578888888888888766


Q ss_pred             -CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHH
Q 016683          218 -AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYM  294 (384)
Q Consensus       218 -~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  294 (384)
                       ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++.. ++..+..+.+...+.
T Consensus       244 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~~~~g~tal~~a  320 (351)
T 3utm_A          244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMG  320 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCChhhhh
Confidence             6788888888888888888888888888888888888888888888888888888887654 344444455555554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=8.3e-45  Score=318.68  Aligned_cols=227  Identities=28%  Similarity=0.374  Sum_probs=182.1

Q ss_pred             hcccCCCCcHHHHHHHcC-------------CHHHHHHHHHhCCCCCcC-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q 016683           50 DIKDANKRGALHFAAREG-------------KTDVCKYLLEELKLDVDT-QDEDGETPLLHAARQGHTETAKYLFEHGAN  115 (384)
Q Consensus        50 ~~~d~~g~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  115 (384)
                      +.+|.+|.||||+|+..|             +.+++++|++. |.+++. .|..|.||||+|+..|+.++|++|+++|++
T Consensus         4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc-cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            567899999999999987             89999999998 888755 589999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Q 016683          116 PTIPSNLGATALHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLL  193 (384)
Q Consensus       116 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  193 (384)
                      ++..|..|.||||+|+..|+.+++++|++++. +++..+..+ ||||+|+..|+.+++++|++.|++++..+..|.||||
T Consensus        83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~  162 (253)
T 1yyh_A           83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH  162 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            99999999999999999999999999999987 777666555 9999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhh
Q 016683          194 SAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL  272 (384)
Q Consensus       194 ~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L  272 (384)
                      +|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+.+|+.+++++|
T Consensus       163 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l  242 (253)
T 1yyh_A          163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL  242 (253)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999987 7899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 016683          273 FPLTS  277 (384)
Q Consensus       273 l~~~~  277 (384)
                      .....
T Consensus       243 ~~~~~  247 (253)
T 1yyh_A          243 DLEHH  247 (253)
T ss_dssp             HC---
T ss_pred             HHHhh
Confidence            87654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.6e-44  Score=312.89  Aligned_cols=227  Identities=27%  Similarity=0.353  Sum_probs=208.6

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHH---hCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Q 016683           50 DIKDANKRGALHFAAREGKTDVCKYLLE---ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA  126 (384)
Q Consensus        50 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  126 (384)
                      +.+|.+|.||||+||..|+.+++++|++   ..+.+++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            5678999999999999999999999997   3599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCC----CCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCC
Q 016683          127 LHHSAGIGNIELLTYLLSKGA----EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAET-EDNITPLLSAVAAGS  200 (384)
Q Consensus       127 L~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~A~~~~~  200 (384)
                      ||+|+..|+.+++++|++.+.    +++..+..+ ||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence            999999999999999999987    666555444 99999999999999999999999999988 889999999999999


Q ss_pred             HHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 016683          201 LTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (384)
Q Consensus       201 ~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (384)
                      .+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.++++.|.+.+
T Consensus       163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~  239 (241)
T 1k1a_A          163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP  239 (241)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence            99999999999999987 78999999999999999999999999999999999999999999999999999998754

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-45  Score=338.08  Aligned_cols=255  Identities=25%  Similarity=0.371  Sum_probs=225.7

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhccc-CCCCcHHHHHHHcCCHHHHHHHHH-------hCCCCC
Q 016683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKD-ANKRGALHFAAREGKTDVCKYLLE-------ELKLDV   83 (384)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~-------~~~~~~   83 (384)
                      ..+.++||.|+..| .+++++|+..           ..+..| ..|.||||+|+..|+.+++++|+.       ..|+++
T Consensus        92 ~~g~t~L~~Aa~~~-~~~~~~L~~~-----------~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v  159 (373)
T 2fo1_E           92 PESPIKLHTEAAGS-YAITEPITRE-----------SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV  159 (373)
T ss_dssp             --CCCHHHHHHHSS-SCCCSCCSTT-----------TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT
T ss_pred             CCCccHHHHHhcCC-chHHHHhccc-----------cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            34456788888844 4666655421           234556 789999999999999998888873       349999


Q ss_pred             cCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC---CCCCCCCCCC-CHh
Q 016683           84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG---AEVDSESDAG-TPL  159 (384)
Q Consensus        84 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~---~~~~~~~~~~-~~l  159 (384)
                      |..|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++++   .+++..+..+ |||
T Consensus       160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L  239 (373)
T 2fo1_E          160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL  239 (373)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred             cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHH
Confidence            999999999999999999999999999999999999999999999999999999999999998   6777766555 999


Q ss_pred             HHHHHcC---CHHHHHHHHhCCCCCCC--------CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcccc-CCCchHHHH
Q 016683          160 IWAAGHG---QQEAVKVLLEHHANPNA--------ETEDNITPLLSAVAAGSLTCLDLLIQAG-ANANIV-AGGATPLHI  226 (384)
Q Consensus       160 ~~A~~~~---~~~~~~~Ll~~~~~~~~--------~~~~g~t~l~~A~~~~~~~~v~~Ll~~g-~~~~~~-~~g~t~L~~  226 (384)
                      |+|+..+   +.+++++|+++|++++.        .+..|.||||+|+..|+.+++++|++.+ ++++.. ..|.||||+
T Consensus       240 ~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~  319 (373)
T 2fo1_E          240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML  319 (373)
T ss_dssp             HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH
T ss_pred             HHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHH
Confidence            9999998   89999999999999886        5678999999999999999999999886 999887 789999999


Q ss_pred             HHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 016683          227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       227 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                      |+..|+.++|++|+++|++++.+|..|.||||+|+.+|+.+++++|++++++
T Consensus       320 A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             HHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            9999999999999999999999999999999999999999999999987654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.4e-43  Score=304.52  Aligned_cols=223  Identities=32%  Similarity=0.516  Sum_probs=211.9

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 016683           50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHH  129 (384)
Q Consensus        50 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  129 (384)
                      +.+|.+|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   83 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL   83 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence            56788999999999999999999999998 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCC-CCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 016683          130 SAGIGNIELLTYLLSKG-AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL  207 (384)
Q Consensus       130 A~~~~~~~~~~~Ll~~~-~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  207 (384)
                      |+..|+.+++++|++.+ .+++..+..+ ||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  163 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL  163 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999999998 7777666555 999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhc
Q 016683          208 IQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF  273 (384)
Q Consensus       208 l~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  273 (384)
                      +++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+.+..++
T Consensus       164 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             HTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999987 78999999999999999999999999999999999999999999999986655554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.7e-42  Score=306.48  Aligned_cols=260  Identities=28%  Similarity=0.345  Sum_probs=236.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q 016683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQ-DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI  133 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  133 (384)
                      +|.||||.|+..|+.+++++|++. |.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            478999999999999999999998 9999988 78899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCC----------CCCCCCHHHHHHHcCCHH
Q 016683          134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE----------TEDNITPLLSAVAAGSLT  202 (384)
Q Consensus       134 ~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~----------~~~g~t~l~~A~~~~~~~  202 (384)
                      |+.+++++|+++|++++..+..+ ||||+|+..|+.+++++|++.|++++..          +..|.||||.|+..|+.+
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T 1wdy_A           83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH
Confidence            99999999999999998877655 9999999999999999999999999887          778999999999999999


Q ss_pred             HHHHHHHc-CCCcccc-CCCchHHHHHHhhCC----HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 016683          203 CLDLLIQA-GANANIV-AGGATPLHIAADIGS----TEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (384)
Q Consensus       203 ~v~~Ll~~-g~~~~~~-~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (384)
                      ++++|++. |++++.. ..|.||||+|+..++    .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++..
T Consensus       163 ~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  242 (285)
T 1wdy_A          163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcc
Confidence            99999998 9999887 789999999999999    99999999999999999999999999999999999999999955


Q ss_pred             CCCCCCCCCchhhHHHHHHhhhchhHHHHHhhhhcCCCCCC
Q 016683          277 SEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDK  317 (384)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  317 (384)
                      ..+....+..+.+.+  ..+......+..+.+.+.++..+.
T Consensus       243 g~~~~~~~~~g~t~l--~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          243 HIEINDTDSDGKTAL--LLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             SCCTTCCCTTSCCHH--HHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             CCCccccCCCCCcHH--HHHHHcCcHHHHHHHHHcCCCCCc
Confidence            555555554444444  445556678888999998887654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.7e-43  Score=302.59  Aligned_cols=224  Identities=30%  Similarity=0.368  Sum_probs=213.8

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 016683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (384)
Q Consensus        53 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  132 (384)
                      +..+.+|||.|+..|+.+++++|++..+..++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS   82 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence            45688999999999999999999998666788899999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 016683          133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG  211 (384)
Q Consensus       133 ~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g  211 (384)
                      .|+.+++++|+++|++++..+..+ ||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|
T Consensus        83 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  162 (231)
T 3aji_A           83 AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK  162 (231)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999998877655 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 016683          212 ANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (384)
Q Consensus       212 ~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (384)
                      ++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|.+++
T Consensus       163 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~  228 (231)
T 3aji_A          163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE  228 (231)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred             CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence            999987 78999999999999999999999999999999999999999999999999999998654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.1e-42  Score=309.84  Aligned_cols=246  Identities=26%  Similarity=0.269  Sum_probs=184.5

Q ss_pred             hhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCC---CcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Q 016683           49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLD---VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGAT  125 (384)
Q Consensus        49 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  125 (384)
                      ++.+|.+|.||||+|+..|+.+++++|++. |.+   ++.++..|.||||+|+..|+.++|++|+++|++++..+..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            356789999999999999999999999998 777   8899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCCC--------------CCCCHhHHHHHcCCH-HHHHHHHhCCCCCCCCCCCCCC
Q 016683          126 ALHHSAGIGNIELLTYLLSKGAEVDSES--------------DAGTPLIWAAGHGQQ-EAVKVLLEHHANPNAETEDNIT  190 (384)
Q Consensus       126 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~~l~~A~~~~~~-~~~~~Ll~~~~~~~~~~~~g~t  190 (384)
                      |||+|+..|+.+++++|++++++.....              ...++++.++..+.. .....+...+.+++..+..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            9999999999999999999987643221              112445554444332 3334445566777888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccC--CCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 016683          191 PLLSAVAAGSLTCLDLLIQAGANANIVA--GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREA  268 (384)
Q Consensus       191 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~  268 (384)
                      |||+|+..|+.+++++|+++|++++...  .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.++
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~  240 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL  240 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHH
Confidence            8888888888888888888888888762  38888888888888888888888888888888888888888888888888


Q ss_pred             HHhhcCCCCCCCCCCCCchhhHHHHHHh
Q 016683          269 VEILFPLTSEDPSIPKWTVDGILEYMQS  296 (384)
Q Consensus       269 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  296 (384)
                      +++|++++.... ..+..+.+.+.+...
T Consensus       241 v~~Ll~~ga~~~-~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          241 ARLLRAHGAPEP-EDGGDKLSPCSSSGS  267 (282)
T ss_dssp             HHHHHHTTCCCC-CCC------------
T ss_pred             HHHHHHcCCCcC-cCCCcccccccccCC
Confidence            888888776533 333334444444433

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=6.1e-42  Score=314.43  Aligned_cols=270  Identities=23%  Similarity=0.270  Sum_probs=233.7

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 016683           50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHH  129 (384)
Q Consensus        50 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  129 (384)
                      ...+..+.|+||.|+..|+.+.++.|+...+.+++..|..|.||||+|+..|+.++|++|+++|++++..|..|.||||+
T Consensus        18 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   97 (351)
T 3utm_A           18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN   97 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             eeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence            44566788999999999999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH-------------
Q 016683          130 SAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSA-------------  195 (384)
Q Consensus       130 A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A-------------  195 (384)
                      |+..|+.+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.+|++.+             
T Consensus        98 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~  177 (351)
T 3utm_A           98 ACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF  177 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence            999999999999999999998877655 999999999999999999999999999999999998765             


Q ss_pred             --------HHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhh---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q 016683          196 --------VAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADI---GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR  263 (384)
Q Consensus       196 --------~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  263 (384)
                              +..++.+.++.++..+...... ..|.||||+|+..   +..+++++|++.|++++.+|..|.||||+|+..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  257 (351)
T 3utm_A          178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAER  257 (351)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             cccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHc
Confidence                    4556666777666665433323 7799999999999   568999999999999999999999999999999


Q ss_pred             CCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhHHHHHhhhhcCCCCCCCCCCC
Q 016683          264 GNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKE  322 (384)
Q Consensus       264 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  322 (384)
                      |+.+++++|++.+..... .+.  .+.+++..+......+.++.+.+.++.........
T Consensus       258 g~~~~v~~Ll~~ga~~n~-~d~--~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g  313 (351)
T 3utm_A          258 AHNDVMEVLHKHGAKMNA-LDS--LGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG  313 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTC-CCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCHHHHHHHHHCCCCCCC-cCC--CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCC
Confidence            999999999998754332 333  33444555566778889999999988776555443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.9e-43  Score=325.41  Aligned_cols=225  Identities=26%  Similarity=0.366  Sum_probs=209.0

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 016683           50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHH  129 (384)
Q Consensus        50 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  129 (384)
                      +..|..|.||||+||..|+.++|++|++. |++++..|..|.||||+|+..|+.++|++|+++|++++.  ..|.||||+
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~   90 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHL   90 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHH
Confidence            45688899999999999999999999998 999999999999999999999999999999999996654  579999999


Q ss_pred             HHHcCCHHHHHHHHhC----CCCCCC-----------------CC-CCCCHhHHHHHcC--CHHHHHHHHhCCCCCCCCC
Q 016683          130 SAGIGNIELLTYLLSK----GAEVDS-----------------ES-DAGTPLIWAAGHG--QQEAVKVLLEHHANPNAET  185 (384)
Q Consensus       130 A~~~~~~~~~~~Ll~~----~~~~~~-----------------~~-~~~~~l~~A~~~~--~~~~~~~Ll~~~~~~~~~~  185 (384)
                      |+..|+.+++++|++.    |.+++.                 .+ .+.||||+|+..|  +.+++++|++.|++++..+
T Consensus        91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d  170 (364)
T 3ljn_A           91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD  170 (364)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC
T ss_pred             HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC
Confidence            9999999999999998    666543                 33 3459999999999  9999999999999999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-----cccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 016683          186 EDNITPLLSAVAAGSLTCLDLLIQAGAN-----ANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV  259 (384)
Q Consensus       186 ~~g~t~l~~A~~~~~~~~v~~Ll~~g~~-----~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  259 (384)
                      ..|.||||+|+..|+.+++++|+++|++     ++.. ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus       171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~  250 (364)
T 3ljn_A          171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYL  250 (364)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            9999999999999999999999999998     7776 789999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHhhcCCCC
Q 016683          260 AAARGNREAVEILFPLTS  277 (384)
Q Consensus       260 A~~~~~~~~v~~Ll~~~~  277 (384)
                      |+..|+.+++++|++.+.
T Consensus       251 A~~~g~~~~v~~Ll~~~~  268 (364)
T 3ljn_A          251 SVRAAMVLLTKELLQKTD  268 (364)
T ss_dssp             HHHTCCHHHHHHHHHHSC
T ss_pred             HHHhChHHHHHHHHHcCC
Confidence            999999999999998764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.1e-43  Score=308.89  Aligned_cols=220  Identities=27%  Similarity=0.369  Sum_probs=177.2

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhCCCC--------CcCCCCCCCcHHHHHHHcCCH-HHHHHHHHCCCCCCCCCC
Q 016683           51 IKDANKRGALHFAAREGKTDVCKYLLEELKLD--------VDTQDEDGETPLLHAARQGHT-ETAKYLFEHGANPTIPSN  121 (384)
Q Consensus        51 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--------~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~  121 (384)
                      .+|..+.++|+.||..|+.++|++|++. +.+        ++..+..|.|||+.|+..++. .++++|++.|++++..|.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~-~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~   84 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEW-TEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ   84 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTC-C----------------------------------------CCCCTTCCCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHC-CCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence            3567788999999999999999999987 543        456778899999999988875 589999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 016683          122 LGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS  200 (384)
Q Consensus       122 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  200 (384)
                      .|.||||+|+..|+.+++++|++.|++++..+..+ ||+++|+..++.+++++|++.|++++.+|..|.||||+|+..|+
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~  164 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH  164 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Confidence            99999999999999999999999999998877666 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhc
Q 016683          201 LTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF  273 (384)
Q Consensus       201 ~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  273 (384)
                      .+++++|+++|++++.. ..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+++++  ++++|.
T Consensus       165 ~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~--i~~lL~  236 (269)
T 4b93_B          165 HELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK--IMELLQ  236 (269)
T ss_dssp             GGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH--HHHHTT
T ss_pred             HHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc--HHHHHH
Confidence            99999999999999987 889999999999999999999999999999999999999999998775  445443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=7.2e-43  Score=322.76  Aligned_cols=261  Identities=22%  Similarity=0.260  Sum_probs=230.5

Q ss_pred             CCchhhhhhhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 016683            3 PDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLD   82 (384)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~   82 (384)
                      |.........++.++||.||..|++++|++|++.    |.++     +.+|..|.||||+|+..|+.+++++|++. |++
T Consensus         9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~----g~~~-----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~   78 (364)
T 3ljn_A            9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET----GVSP-----TIQNRFGCTALHLACKFGCVDTAKYLASV-GEV   78 (364)
T ss_dssp             -------CCHHHHHHHHHHHHHTCHHHHHHHHHT----TCCT-----TCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCC
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCc-----cccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCC
Confidence            4445555667889999999999999999999987    4443     66788999999999999999999999998 875


Q ss_pred             CcCCCCCCCcHHHHHHHcCCHHHHHHHHHC----CCCCCC-----------------CCCCCCcHHHHHHHcC--CHHHH
Q 016683           83 VDTQDEDGETPLLHAARQGHTETAKYLFEH----GANPTI-----------------PSNLGATALHHSAGIG--NIELL  139 (384)
Q Consensus        83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~-----------------~~~~g~t~L~~A~~~~--~~~~~  139 (384)
                      ++.  ..|.||||+|+..|+.++|++|+++    |++++.                 .+..|.||||+|+..|  +.+++
T Consensus        79 ~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v  156 (364)
T 3ljn_A           79 HSL--WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMI  156 (364)
T ss_dssp             CCC--BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHH
T ss_pred             ccc--cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHH
Confidence            543  5799999999999999999999998    887776                 8889999999999999  99999


Q ss_pred             HHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 016683          140 TYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHAN-----PNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN  213 (384)
Q Consensus       140 ~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~-----~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~  213 (384)
                      ++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+.+++++|+++|++
T Consensus       157 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad  236 (364)
T 3ljn_A          157 KILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID  236 (364)
T ss_dssp             HHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999877655 999999999999999999999998     999999999999999999999999999999999


Q ss_pred             cccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCC------------CCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 016683          214 ANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN------------VTDEDGQKPIQVAAARGNREAVEILFPL  275 (384)
Q Consensus       214 ~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------------~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (384)
                      ++.. ..|.||||+|+..|+.+++++|+++|++++            ..+..++||++.|+..|+.+.+..|+..
T Consensus       237 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~  311 (364)
T 3ljn_A          237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE  311 (364)
T ss_dssp             TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHH
Confidence            9987 789999999999999999999999987642            2456789999999999987777777643

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.4e-41  Score=292.41  Aligned_cols=223  Identities=29%  Similarity=0.355  Sum_probs=210.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHH
Q 016683           15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPL   94 (384)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   94 (384)
                      .++|+.|++.|+++.++++++.        .+...+..|..|.||||+|+..|+.+++++|++. |++++..+..|.|||
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~--------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L   77 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILA--------DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPL   77 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHH--------CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHH
T ss_pred             cchHHHHHHhCCHHHHHHHHHh--------chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHH
Confidence            3579999999999999999987        3334567789999999999999999999999998 999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHH
Q 016683           95 LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKV  173 (384)
Q Consensus        95 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~  173 (384)
                      |+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+ ||||+|+..|+.+++++
T Consensus        78 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  157 (231)
T 3aji_A           78 HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI  157 (231)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998877655 99999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCC
Q 016683          174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADP  246 (384)
Q Consensus       174 Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  246 (384)
                      |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..++.+++++|+++|+++
T Consensus       158 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             HHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence            99999999999999999999999999999999999999999977 78999999999999999999999988763

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.9e-41  Score=290.41  Aligned_cols=227  Identities=24%  Similarity=0.309  Sum_probs=211.9

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHH
Q 016683           51 IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHH  129 (384)
Q Consensus        51 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~  129 (384)
                      ..|..|.|+||.|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            3477899999999999999999999998 99999999999999999999999999999999999988655 459999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHH
Q 016683          130 SAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS-LTCLDLL  207 (384)
Q Consensus       130 A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~-~~~v~~L  207 (384)
                      |+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++ .+++++|
T Consensus        83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L  162 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL  162 (240)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHH
Confidence            999999999999999999998776655 99999999999999999999999999999999999999997665 8999999


Q ss_pred             HHcCCCcccc-C-CCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 016683          208 IQAGANANIV-A-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       208 l~~g~~~~~~-~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                      ++.|++++.. . .|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|++.+..
T Consensus       163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            9999999977 3 799999999999999999999999999999999999999999999999999999987654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=7.4e-40  Score=299.37  Aligned_cols=251  Identities=27%  Similarity=0.369  Sum_probs=227.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcH
Q 016683           14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETP   93 (384)
Q Consensus        14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   93 (384)
                      +.++||.||..|+.++|+.|++.    |..+     +.++..+.++++.++..+...++..++.. +.+++..|..|.||
T Consensus        59 g~TpLh~A~~~g~~~iv~~Ll~~----ga~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~g~t~  128 (337)
T 4g8k_A           59 GWTPLHNAVQMSREDIVELLLRH----GADP-----VLRKKNGATPFILAAIAGSVKLLKLFLSK-GADVNECDFYGFTA  128 (337)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT----TCCT-----TCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCBCTTCCBH
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHc----CCch-----hhhccCCCchhHHHHhcccchhhHHhhhc-cchhhhhccCCCCH
Confidence            46799999999999999999997    5443     56788999999999999999999999987 99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCC----------CCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC-CHhHH
Q 016683           94 LLHAARQGHTETAKYLFEHGANPTIP----------SNLGATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG-TPLIW  161 (384)
Q Consensus        94 L~~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~-~~l~~  161 (384)
                      ||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.+++++|++ .|++++..+..+ |+++.
T Consensus       129 l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~  208 (337)
T 4g8k_A          129 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH  208 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHH
Confidence            99999999999999999999988654          4568999999999999999999995 699998877655 99988


Q ss_pred             HHHcCC----HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCchHHHHHHhhCCHHH
Q 016683          162 AAGHGQ----QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA-GANANIV-AGGATPLHIAADIGSTEI  235 (384)
Q Consensus       162 A~~~~~----~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~g~t~L~~A~~~~~~~~  235 (384)
                      ++..+.    ..++++|+++|++++.++..|.||||+|+..|+.+++++|++. |++++.. ..|+||||+|+..|+.++
T Consensus       209 ~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~i  288 (337)
T 4g8k_A          209 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI  288 (337)
T ss_dssp             HHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHH
Confidence            776543    4688999999999999999999999999999999999999985 7899887 789999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 016683          236 IKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED  279 (384)
Q Consensus       236 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  279 (384)
                      |++|+++|++++.+     +|||+|+.+|+.++|++|+++++..
T Consensus       289 v~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~  327 (337)
T 4g8k_A          289 AELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKE  327 (337)
T ss_dssp             HHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC
T ss_pred             HHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCC
Confidence            99999999999864     6999999999999999999998754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=9.8e-41  Score=287.89  Aligned_cols=215  Identities=27%  Similarity=0.352  Sum_probs=196.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCC-cCCCCCCCcHHHHHHHcCCHHHHHHHHHCC--CCCCC-CCCCCCcHHHHHH
Q 016683           56 KRGALHFAAREGKTDVCKYLLEELKLDV-DTQDEDGETPLLHAARQGHTETAKYLFEHG--ANPTI-PSNLGATALHHSA  131 (384)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~g~t~L~~A~  131 (384)
                      |+||||+|+..|+.+++++|++. +.++ +..+..|.||||+|+..|+.+++++|+++|  ++++. .+..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHS-KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHH-CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhc-CccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            78999999999999999999998 5554 458999999999999999999999999999  55555 7889999999999


Q ss_pred             HcCCHHHHHHHHhCC--CCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 016683          132 GIGNIELLTYLLSKG--AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI  208 (384)
Q Consensus       132 ~~~~~~~~~~Ll~~~--~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  208 (384)
                      ..|+.+++++|+++|  .+++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999998  7777666544 9999999999999999999999999999999999999999999999999999


Q ss_pred             HcC-CCcccc-CCCchHHHHHHhhCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcC
Q 016683          209 QAG-ANANIV-AGGATPLHIAADIGSTEIIKCLL-KAGADPNVTDEDGQKPIQVAAARGNREAVEILFP  274 (384)
Q Consensus       209 ~~g-~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  274 (384)
                      +.| ++++.. ..|+||||+|+..|+.+++++|+ ++|++++.+|..|+||+++|+..   +++++|++
T Consensus       161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            999 898877 78999999999999999999999 89999999999999999999765   56666654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.9e-40  Score=295.93  Aligned_cols=252  Identities=22%  Similarity=0.277  Sum_probs=196.8

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhC----------CCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q 016683           53 DANKRGALHFAAREGKTDVCKYLLEEL----------KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL  122 (384)
Q Consensus        53 d~~g~t~L~~A~~~g~~~~v~~Ll~~~----------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  122 (384)
                      ...|.|+||+|+..|+.+.+..++...          ...++..+..|+||||+|+..|+.++|++|++.|++++..|..
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~   91 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD   91 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            457999999999999987777665431          2235678899999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q 016683          123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL  201 (384)
Q Consensus       123 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  201 (384)
                      |.||||+|+..|+.+++++|+++|++++..+..+ ||||+|+..|+.+++++|++.|++++..+ .|.||||+|+..|+.
T Consensus        92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~  170 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHV  170 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCH
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCH
Confidence            9999999999999999999999999998877655 99999999999999999999999988654 599999999999999


Q ss_pred             HHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCC
Q 016683          202 TCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP  280 (384)
Q Consensus       202 ~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  280 (384)
                      +++++|++.|++++.. ..|.||||+|+..|+.+++++|++.|++++. +..|.||||+|+..|+.+++++|++++.. .
T Consensus       171 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~  248 (285)
T 3d9h_A          171 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGAD-T  248 (285)
T ss_dssp             HHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCC-T
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-C
Confidence            9999999999999877 7899999999999999999999999999995 88999999999999999999999998654 3


Q ss_pred             CCCCCchhhHHHHHHhhhchhHHHHHhhhhc
Q 016683          281 SIPKWTVDGILEYMQSESGKQLEETRNLKEN  311 (384)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  311 (384)
                      ...+..+.+.+.++.    +..+..+.+++.
T Consensus       249 ~~~d~~g~t~l~~A~----~~~~~~~~Ll~~  275 (285)
T 3d9h_A          249 QAKNAEGKRPVELVP----PESPLAQLFLER  275 (285)
T ss_dssp             TCCCTTSCCGGGGSC----TTSHHHHHHHHH
T ss_pred             CCcCCCCCCHHHHhc----CccHHHHHHHHh
Confidence            444444555544433    123444445444

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.8e-40  Score=291.08  Aligned_cols=224  Identities=28%  Similarity=0.365  Sum_probs=183.3

Q ss_pred             hhHHHHHHHHHHHcC-------------ChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHH
Q 016683           11 VRERVQQFLNAACTG-------------NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLE   77 (384)
Q Consensus        11 ~~~~~~~l~~A~~~g-------------~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~   77 (384)
                      ...+.++||.|+..|             +.+++++|++.    |..    +....|..|.||||+|+..|+.+++++|++
T Consensus         7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~----g~~----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~   78 (253)
T 1yyh_A            7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ----GAS----LHNQTDRTGETALHLAARYSRSDAAKRLLE   78 (253)
T ss_dssp             -----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc----cCC----cccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            356789999999987             99999999987    322    234568899999999999999999999999


Q ss_pred             hCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 016683           78 ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG  156 (384)
Q Consensus        78 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  156 (384)
                      . |++++..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+..|+.+++++|++.|++++..+..+
T Consensus        79 ~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g  157 (253)
T 1yyh_A           79 A-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG  157 (253)
T ss_dssp             T-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTS
T ss_pred             c-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCC
Confidence            8 99999999999999999999999999999999987 899999999999999999999999999999999999877655


Q ss_pred             -CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHH
Q 016683          157 -TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE  234 (384)
Q Consensus       157 -~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~  234 (384)
                       ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+
T Consensus       158 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~  237 (253)
T 1yyh_A          158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD  237 (253)
T ss_dssp             CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHH
Confidence             9999999999999999999999999999999999999999999999999999999999987 78999999999999999


Q ss_pred             HHHHHHHCC
Q 016683          235 IIKCLLKAG  243 (384)
Q Consensus       235 ~v~~Ll~~g  243 (384)
                      ++++|....
T Consensus       238 i~~~l~~~~  246 (253)
T 1yyh_A          238 IVRLLDLEH  246 (253)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHHh
Confidence            999998753

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.5e-41  Score=302.80  Aligned_cols=244  Identities=29%  Similarity=0.338  Sum_probs=210.9

Q ss_pred             HHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHH
Q 016683           20 NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAAR   99 (384)
Q Consensus        20 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   99 (384)
                      .++..+..+.++.++....+.............+..|.||||.||..|+.+++++|++. |++++..|..|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHH
Confidence            46777888888888876443222222222333456789999999999999999999998 99999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhC-
Q 016683          100 QGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH-  177 (384)
Q Consensus       100 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~-  177 (384)
                      .|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..+ ||||+|+..++.+++++++.. 
T Consensus        83 ~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~  162 (299)
T 1s70_B           83 DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ  162 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999998877655 999999999999999877652 


Q ss_pred             CCC--------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhh
Q 016683          178 HAN--------------------------PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADI  230 (384)
Q Consensus       178 ~~~--------------------------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~  230 (384)
                      +.+                          ....+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~  242 (299)
T 1s70_B          163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW  242 (299)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhc
Confidence            332                          2335667999999999999999999999999999887 7899999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 016683          231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG  264 (384)
Q Consensus       231 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  264 (384)
                      |+.+++++|+++|++++.+|..|.||+|+|++..
T Consensus       243 ~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~  276 (299)
T 1s70_B          243 GKEEACRILVENLCDMEAVNKVGQTAFDVADEDI  276 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGG
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999996543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-41  Score=314.06  Aligned_cols=296  Identities=18%  Similarity=0.207  Sum_probs=220.3

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHhhhcCCC---------------ccchhhhcccCCCCcHHHHHHHcCCHHHHHHHH
Q 016683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKG---------------LSKTVADIKDANKRGALHFAAREGKTDVCKYLL   76 (384)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~---------------~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   76 (384)
                      .....+|+.++..|+.+.++.+++...+....               +...+....+..|.||||+|+..|. +++++|+
T Consensus        35 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~  113 (373)
T 2fo1_E           35 TSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPIT  113 (373)
T ss_dssp             -----------------------------------------------------------CCCHHHHHHHSSS-CCCSCCS
T ss_pred             cccccccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHhc
Confidence            34556788899889988888877654432100               1112345678899999999999654 7888775


Q ss_pred             HhCCCCCcCCC-CCCCcHHHHHHHcCCHHHHHHHH--------HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 016683           77 EELKLDVDTQD-EDGETPLLHAARQGHTETAKYLF--------EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA  147 (384)
Q Consensus        77 ~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll--------~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  147 (384)
                         +.+++..| ..|.||||+|+..|+.+++++|+        +.|++++..|..|.||||+|+..|+.+++++|+++|+
T Consensus       114 ---~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  190 (373)
T 2fo1_E          114 ---RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA  190 (373)
T ss_dssp             ---TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ---cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCC
Confidence               45778888 78999999999999998888776        8999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCC---CCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHHcCCCcccc---
Q 016683          148 EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH---ANPNAETEDNITPLLSAVAAG---SLTCLDLLIQAGANANIV---  217 (384)
Q Consensus       148 ~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~---~~~~~~~~~g~t~l~~A~~~~---~~~~v~~Ll~~g~~~~~~---  217 (384)
                      +++..+..+ ||||+|+..|+.+++++|++.+   ++++..+..|.||||+|+..+   +.+++++|+++|++++..   
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  270 (373)
T 2fo1_E          191 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA  270 (373)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred             CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccc
Confidence            998877655 9999999999999999999998   799999999999999999998   899999999999998852   


Q ss_pred             ------CCCchHHHHHHhhCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhH
Q 016683          218 ------AGGATPLHIAADIGSTEIIKCLLKAG-ADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGI  290 (384)
Q Consensus       218 ------~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  290 (384)
                            ..|.||||+|+..|+.++|++|++.| ++++.+|..|.||||+|+..|+.+++++|++++..... .+..+.+ 
T Consensus       271 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~-~d~~g~t-  348 (373)
T 2fo1_E          271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA-VDATDHT-  348 (373)
T ss_dssp             GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCSSSCC-
T ss_pred             ccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC-CCCCCCC-
Confidence                  47999999999999999999999876 99999999999999999999999999999998765333 3333334 


Q ss_pred             HHHHHhhhchhHHHHHhhhhcCCC
Q 016683          291 LEYMQSESGKQLEETRNLKENNAP  314 (384)
Q Consensus       291 ~~~~~~~~~~~~~~~~~l~~~~~~  314 (384)
                       .+..+......+.++.+.+.++.
T Consensus       349 -~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          349 -ARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             -HHHHHHHTTCHHHHHHHHTTC--
T ss_pred             -HHHHHHHcCCHHHHHHHHhcCcc
Confidence             44445556777778888777654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=9.3e-41  Score=290.42  Aligned_cols=227  Identities=25%  Similarity=0.338  Sum_probs=206.8

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCC
Q 016683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE   91 (384)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   91 (384)
                      +.+.++||.||..|+.+++++|++.+.+.+..+     +.+|..|.||||+|+..|+.+++++|++. |++++..+..|.
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~   80 (241)
T 1k1a_A            7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-----DIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQ   80 (241)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-----CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----CcccccCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCC
Confidence            345678999999999999999999766545544     56788999999999999999999999997 999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-C-CCCHhHHHHHc
Q 016683           92 TPLLHAARQGHTETAKYLFEHGA----NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-D-AGTPLIWAAGH  165 (384)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~-~~~~l~~A~~~  165 (384)
                      ||||+|+..|+.+++++|++.++    +++..+..|.||||+|+..|+.+++++|++.|++++..+ . +.||||+|+..
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  160 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN  160 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHc
Confidence            99999999999999999999987    888999999999999999999999999999999998776 3 44999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCC
Q 016683          166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGA  244 (384)
Q Consensus       166 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga  244 (384)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.++++.|.+.++
T Consensus       161 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          161 NSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            9999999999999999999999999999999999999999999999999987 789999999999999999999998764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.6e-40  Score=284.34  Aligned_cols=211  Identities=29%  Similarity=0.382  Sum_probs=192.5

Q ss_pred             CCHHHHHHHHHhCCCCCcCC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 016683           67 GKTDVCKYLLEELKLDVDTQ-DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK  145 (384)
Q Consensus        67 g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  145 (384)
                      |+.+++++|++. |.+++.. |..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.
T Consensus         2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEET-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHc-CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            678888899987 8888765 78999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-CCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCch
Q 016683          146 GA-EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGAT  222 (384)
Q Consensus       146 ~~-~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t  222 (384)
                      +. +++..+..+ ||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.|
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  160 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET  160 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcC
Confidence            86 666655444 9999999999999999999999999999999999999999999999999999999999887 78999


Q ss_pred             HHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 016683          223 PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       223 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                      |||+|+..|+.+++++|+++|++++.+|..|.||+++|+.+++.+++++|++++..
T Consensus       161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999988764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-41  Score=297.67  Aligned_cols=233  Identities=24%  Similarity=0.359  Sum_probs=174.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHH-HHHHHHHhCCCCCcCCCCCCC
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTD-VCKYLLEELKLDVDTQDEDGE   91 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~g~   91 (384)
                      ...++|+.||..|++++|++|++...+.... .....+..+..|.||||.|+..++.+ ++++|++. |+++|.+|.+|+
T Consensus        10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gadvn~~d~~G~   87 (269)
T 4b93_B           10 REVEKLLRAVADGDLEMVRYLLEWTEEDLED-AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLGVNVTSQDGS   87 (269)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------C-CCCTTCCCTTSC
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCccccc-ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCCCCCcCCCCC
Confidence            4568999999999999999999874321111 12224567888999999999988765 78888887 999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHH
Q 016683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA  170 (384)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~  170 (384)
                      ||||+|+..|+.++|++|++.|++++..+..|.||+++|+..++.+++++|++.|++++..+..+ ||||+|+..|+.++
T Consensus        88 TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~  167 (269)
T 4b93_B           88 SPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHEL  167 (269)
T ss_dssp             CHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGG
T ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999877665 99999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCC-HHHHHHHHHCCCCCC
Q 016683          171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGS-TEIIKCLLKAGADPN  247 (384)
Q Consensus       171 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~  247 (384)
                      +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|+||||+|+++++ .+++++|...++.++
T Consensus       168 v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          168 VALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred             HHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence            99999999999999999999999999999999999999999999988 889999999998876 455666666555443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=5.8e-41  Score=299.26  Aligned_cols=237  Identities=17%  Similarity=0.142  Sum_probs=210.9

Q ss_pred             HHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHc
Q 016683           21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQ  100 (384)
Q Consensus        21 A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  100 (384)
                      +++..+...+..++...          ..+.+|..|.||||+|+..|+.+++++|++. |++++..  +|.||||+|+..
T Consensus         6 ~i~~~~~~~v~~lL~~~----------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~--~g~t~L~~A~~~   72 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK----------DTFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQAATL   72 (285)
T ss_dssp             TGGGCCHHHHHHHHHST----------TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC--TTCCHHHHHTTS
T ss_pred             HHHhcCHHHHHHHHHhC----------CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC--CCCCHHHHHHHc
Confidence            45667777777777641          1367889999999999999999999999998 9999888  489999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC--CHhHHHHHcCCHHHHHHHHhCC
Q 016683          101 GHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHH  178 (384)
Q Consensus       101 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--~~l~~A~~~~~~~~~~~Ll~~~  178 (384)
                      |+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..+  ||||+|+..|+.+++++|+++|
T Consensus        73 g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g  152 (285)
T 3kea_A           73 EDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI  152 (285)
T ss_dssp             SSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999998776654  9999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchH-HHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcH
Q 016683          179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATP-LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP  256 (384)
Q Consensus       179 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~-L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  256 (384)
                      ++.... ..|.||||+|+..|+.+++++|+++|++++.. ..|+|| ||+|+..|+.+++++|+++|++++..|.     
T Consensus       153 ~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-----  226 (285)
T 3kea_A          153 PSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-----  226 (285)
T ss_dssp             CTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-----
T ss_pred             Cccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-----
Confidence            877333 27899999999999999999999999999987 678897 9999999999999999999999999883     


Q ss_pred             HHHHHHcCCHHHHHhhcCCCCC
Q 016683          257 IQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       257 l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                        .|+..|+.+++++|++++..
T Consensus       227 --~a~~~~~~~iv~~Ll~~g~~  246 (285)
T 3kea_A          227 --ENVLLDDAEIAKMIIEKHVE  246 (285)
T ss_dssp             --GGGTTTCHHHHHHHHHHHHH
T ss_pred             --hhhhcCCHHHHHHHHHcCCC
Confidence              56779999999999987643

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.7e-39  Score=277.10  Aligned_cols=214  Identities=28%  Similarity=0.349  Sum_probs=196.0

Q ss_pred             CChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHH
Q 016683           25 GNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTE  104 (384)
Q Consensus        25 g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~  104 (384)
                      |+.+++++|++.    |.++    ....|..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+
T Consensus         2 g~~~~i~~Ll~~----g~~~----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~   72 (223)
T 2f8y_A            2 DAPAVISDFIYQ----GASL----HNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQG   72 (223)
T ss_dssp             ---CCEETTEET----TCCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CcHHHHHHHHHc----CCCc----ccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            567777777765    3332    244588999999999999999999999998 9999999999999999999999999


Q ss_pred             HHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCC
Q 016683          105 TAKYLFEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN  182 (384)
Q Consensus       105 ~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~  182 (384)
                      ++++|++++. +++..+..|.||||+|+..|+.+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++++
T Consensus        73 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  152 (223)
T 2f8y_A           73 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD  152 (223)
T ss_dssp             HHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999987 889999999999999999999999999999999998877655 99999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCC
Q 016683          183 AETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN  247 (384)
Q Consensus       183 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  247 (384)
                      ..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..++.+++++|+++|+...
T Consensus       153 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          153 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            99999999999999999999999999999999987 789999999999999999999999998654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.2e-38  Score=276.53  Aligned_cols=219  Identities=25%  Similarity=0.376  Sum_probs=203.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCc
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   92 (384)
                      .+.++||.||..|+.+++++|++.    |.++     +..+..|.||||+|+..|+.+++++|++. |++++..+..|.|
T Consensus        10 ~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t   79 (237)
T 3b7b_A           10 NKRSPLHAAAEAGHVDICHMLVQA----GANI-----DTCSEDQRTPLMEAAENNHLEAVKYLIKA-GALVDPKDAEGST   79 (237)
T ss_dssp             CSCCHHHHHHHHTCHHHHHHHHHT----TCCT-----TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCCCCCCTTSCC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHc----CCCc-----CccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCc
Confidence            455789999999999999999987    4433     56678899999999999999999999987 9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHH
Q 016683           93 PLLHAARQGHTETAKYLFEHG-ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA  170 (384)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~  170 (384)
                      |||+|+..|+.+++++|+++| .+++..+..|.||||+|+..|+.+++++|+++|++++..+..+ ||||+|+..|+.++
T Consensus        80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHH
Confidence            999999999999999999998 8999999999999999999999999999999999998876655 99999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHH
Q 016683          171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLK  241 (384)
Q Consensus       171 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~  241 (384)
                      +++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.. ..|.||||+|+..|+.+.+..|++
T Consensus       160 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987 889999999999999876666654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8.5e-39  Score=284.59  Aligned_cols=237  Identities=22%  Similarity=0.260  Sum_probs=183.2

Q ss_pred             CcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CH
Q 016683           83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGAN---PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TP  158 (384)
Q Consensus        83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~  158 (384)
                      ++.+|..|+||||+|+..|+.++|++|+++|++   ++..+..|.||||+|+..|+.+++++|+++|++++..+..+ ||
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            467899999999999999999999999999998   78899999999999999999999999999999998877655 99


Q ss_pred             hHHHHHcCCHHHHHHHHhCCCCCCCC-------------CCCCCCHHHHHHHcCCH-HHHHHHHHcCCCcccc-CCCchH
Q 016683          159 LIWAAGHGQQEAVKVLLEHHANPNAE-------------TEDNITPLLSAVAAGSL-TCLDLLIQAGANANIV-AGGATP  223 (384)
Q Consensus       159 l~~A~~~~~~~~~~~Ll~~~~~~~~~-------------~~~g~t~l~~A~~~~~~-~~v~~Ll~~g~~~~~~-~~g~t~  223 (384)
                      ||+|+..|+.+++++|++.+++....             ...+.++++.++..+.. .....+...+.+++.. ..|.||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            99999999999999999998764322             22345566665554433 3334444556667666 779999


Q ss_pred             HHHHHhhCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhH
Q 016683          224 LHIAADIGSTEIIKCLLKAGADPNVTDE-DGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQL  302 (384)
Q Consensus       224 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (384)
                      ||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+.. +...+..  +.+++..+......
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~--g~tpL~~A~~~~~~  238 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYG--GRTPLGSALLRPNP  238 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT--SCCHHHHHHTSSCH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccC--CCCHHHHHHHcCCc
Confidence            9999999999999999999999999986 499999999999999999999998654 3333333  34455556667788


Q ss_pred             HHHHhhhhcCCCCCCCCCCC
Q 016683          303 EETRNLKENNAPKDKAPMKE  322 (384)
Q Consensus       303 ~~~~~l~~~~~~~~~~~~~~  322 (384)
                      +..+.+.+.++.........
T Consensus       239 ~~v~~Ll~~ga~~~~~~~~g  258 (282)
T 1oy3_D          239 ILARLLRAHGAPEPEDGGDK  258 (282)
T ss_dssp             HHHHHHHHTTCCCCCCC---
T ss_pred             HHHHHHHHcCCCcCcCCCcc
Confidence            89999999998877555443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.2e-38  Score=273.91  Aligned_cols=226  Identities=28%  Similarity=0.436  Sum_probs=203.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCC-CCCC
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD-EDGE   91 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~   91 (384)
                      .+.++|+.|+..|+++++++|++.    |.++     +.++..|.||||+|+..|+.+++++|++. +.+++..+ ..|.
T Consensus         8 ~~~~~l~~A~~~g~~~~~~~Ll~~----g~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~   77 (240)
T 3eu9_A            8 YSTWDIVKATQYGIYERCRELVEA----GYDV-----RQPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNS   77 (240)
T ss_dssp             GGGCCHHHHHHTTCHHHHHHHHHT----TCCT-----TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTB
T ss_pred             ccchHHHHHHHcCChHHHHHHHHc----CCCc-----CCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCC
Confidence            345679999999999999999987    4333     56688899999999999999999999998 88777655 4599


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCC-HH
Q 016683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ-QE  169 (384)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~-~~  169 (384)
                      ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+ ||||+|+..++ .+
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred             ChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence            99999999999999999999999999999999999999999999999999999999998877655 99999997666 89


Q ss_pred             HHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCC
Q 016683          170 AVKVLLEHHANPNAETE-DNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN  247 (384)
Q Consensus       170 ~~~~Ll~~~~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  247 (384)
                      ++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|++.|++..
T Consensus       158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            99999999999999987 8999999999999999999999999999987 789999999999999999999999987654


Q ss_pred             C
Q 016683          248 V  248 (384)
Q Consensus       248 ~  248 (384)
                      .
T Consensus       238 ~  238 (240)
T 3eu9_A          238 Y  238 (240)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.8e-38  Score=272.49  Aligned_cols=215  Identities=24%  Similarity=0.345  Sum_probs=197.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCC--CCCcC-CCCCCC
Q 016683           15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK--LDVDT-QDEDGE   91 (384)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~-~~~~g~   91 (384)
                      .++||.||+.|+.+++++|++..        +.....+|..|.||||+|+..|+.+++++|++. |  .+++. .+..|.
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~--------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~g~   73 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSK--------PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGW   73 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHC--------GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCCGGGCCCTTSC
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcC--------ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc-cccccccccCCCCCC
Confidence            35899999999999999999972        233455788999999999999999999999998 7  66666 889999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCH
Q 016683           92 TPLLHAARQGHTETAKYLFEHG--ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ  168 (384)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~  168 (384)
                      ||||+|+..|+.+++++|+++|  ++++..+..|.||||+|+..|+.+++++|+++|++++..+..+ ||||+|+..|+.
T Consensus        74 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  153 (228)
T 2dzn_A           74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL  153 (228)
T ss_dssp             CHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999998  8999999999999999999999999999999999998877655 999999999999


Q ss_pred             HHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHH
Q 016683          169 EAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLI-QAGANANIV-AGGATPLHIAADIGSTEIIKCLLK  241 (384)
Q Consensus       169 ~~~~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll-~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~  241 (384)
                      +++++|++.| ++++..+..|.||||+|+..|+.+++++|+ +.|++++.. ..|.||||+|+..   +++++|++
T Consensus       154 ~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          154 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             HHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            9999999999 999999999999999999999999999999 999999988 7899999999765   56666765

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.4e-38  Score=283.75  Aligned_cols=237  Identities=19%  Similarity=0.187  Sum_probs=204.9

Q ss_pred             HcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 016683           65 REGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLS  144 (384)
Q Consensus        65 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  144 (384)
                      ...+...+..++.. + +++.+|..|.||||+|+..|+.++|++|+++|++++..+  |.||||+|+..|+.+++++|++
T Consensus         8 ~~~~~~~v~~lL~~-~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~   83 (285)
T 3kea_A            8 NTWKSKQLKSFLSS-K-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLF   83 (285)
T ss_dssp             GGCCHHHHHHHHHS-T-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHh-C-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHH
Confidence            33444444444444 2 688999999999999999999999999999999999884  8999999999999999999999


Q ss_pred             CCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCch
Q 016683          145 KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDN-ITPLLSAVAAGSLTCLDLLIQAGANANIVAGGAT  222 (384)
Q Consensus       145 ~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g-~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t  222 (384)
                      +|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|+++.....|.|
T Consensus        84 ~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t  163 (285)
T 3kea_A           84 SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLS  163 (285)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHH
T ss_pred             CCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCcc
Confidence            999998877655 99999999999999999999999999999999 7999999999999999999999988754457999


Q ss_pred             HHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchh
Q 016683          223 PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP-IQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQ  301 (384)
Q Consensus       223 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (384)
                      |||+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..|+.+++++|++++......+.          .+.....
T Consensus       164 ~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~----------~a~~~~~  233 (285)
T 3kea_A          164 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL----------ENVLLDD  233 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG----------GGGTTTC
T ss_pred             HHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh----------hhhhcCC
Confidence            9999999999999999999999999999999998 9999999999999999999765433331          1123445


Q ss_pred             HHHHHhhhhcCCCC
Q 016683          302 LEETRNLKENNAPK  315 (384)
Q Consensus       302 ~~~~~~l~~~~~~~  315 (384)
                      .+.++.+.+.+...
T Consensus       234 ~~iv~~Ll~~g~~~  247 (285)
T 3kea_A          234 AEIAKMIIEKHVEY  247 (285)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCC
Confidence            66666666665443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.5e-37  Score=268.73  Aligned_cols=206  Identities=27%  Similarity=0.273  Sum_probs=174.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-----CCCCCCCCcHHHH
Q 016683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP-----TIPSNLGATALHH  129 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~g~t~L~~  129 (384)
                      .|.||||+|+..|+.+++++|++..|++++.+|..|+||||+|+..|+.+++++|+++|+++     +..|..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            48999999999999999999999879999999999999999999999999999999999887     6677889999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 016683          130 SAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ  209 (384)
Q Consensus       130 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  209 (384)
                      |+..|+.+++++|+++|++++..+... .+                  ....+..+..|.||||+|+..|+.+++++|++
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~-~~------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  142 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGS-VF------------------HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE  142 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSG-GG------------------SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCc-ce------------------eecccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999987755431 11                  11344556678888888888888888888888


Q ss_pred             cCCCcccc-CCCchHHHHHHhhCCHHHH----HHHHHCCCCC------CCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 016683          210 AGANANIV-AGGATPLHIAADIGSTEII----KCLLKAGADP------NVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       210 ~g~~~~~~-~~g~t~L~~A~~~~~~~~v----~~Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                      +|++++.. ..|+||||+|+..|+.+++    ++|+++|+++      +.+|..|+||||+|+..|+.+++++|++++..
T Consensus       143 ~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          143 HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            88888776 6788888888888888877    8888888877      57888888888888888888888888877654


Q ss_pred             C
Q 016683          279 D  279 (384)
Q Consensus       279 ~  279 (384)
                      .
T Consensus       223 ~  223 (232)
T 2rfa_A          223 I  223 (232)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.1e-39  Score=281.18  Aligned_cols=208  Identities=22%  Similarity=0.235  Sum_probs=142.7

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhC---CCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q 016683           51 IKDANKRGALHFAAREGKTDVCKYLLEEL---KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL  127 (384)
Q Consensus        51 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L  127 (384)
                      .+|.+|.||||+|+..|+.+++++|++..   +.+++..+..|.||||+|+..|+.++|++|+++|++++..|..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            46788999999999999999999999862   237899999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCC------CCCC-CCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcC
Q 016683          128 HHSAGIGNIELLTYLLSKGAEVD------SESD-AGTPLIWAAGHGQQEAVKVLLEHHANPNAETE-DNITPLLSAVAAG  199 (384)
Q Consensus       128 ~~A~~~~~~~~~~~Ll~~~~~~~------~~~~-~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~g~t~l~~A~~~~  199 (384)
                      |+|+..|+.+++++|++.+.+..      ..+. +.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence            99999999999999999987632      1221 22555555555555555555555555555554 5555555555555


Q ss_pred             CHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCC--CCCCCCCcHHH
Q 016683          200 SLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN--VTDEDGQKPIQ  258 (384)
Q Consensus       200 ~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~  258 (384)
                      +.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|+++.  ..+..|.||.+
T Consensus       163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  224 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD  224 (236)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCC
T ss_pred             CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHh
Confidence            555555555555555544 445555555555555555555555555433  44444444443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=5e-36  Score=253.24  Aligned_cols=191  Identities=27%  Similarity=0.413  Sum_probs=145.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q 016683           54 ANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI  133 (384)
Q Consensus        54 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  133 (384)
                      ..+.||||.|+..|+.++++.|+...+.+++..|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            45788999999999999999999886668888888999999999999999999999999999988888888888888887


Q ss_pred             CCHHHHHHHH-hCCCCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-
Q 016683          134 GNIELLTYLL-SKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG-  211 (384)
Q Consensus       134 ~~~~~~~~Ll-~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g-  211 (384)
                      |+.+++++|+ ..+.+                                ++..+..|.||||.|+..|+.+++++|+++| 
T Consensus        83 ~~~~~~~~Ll~~~~~~--------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  130 (201)
T 3hra_A           83 GRTEILAYMLKHATPD--------------------------------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR  130 (201)
T ss_dssp             TCHHHHHHHHHHSCCC--------------------------------TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHhccCcc--------------------------------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            7777777777 33334                                4444555566666666666666666666666 


Q ss_pred             CCcccc-CCCchHHHHHHhhCC-----HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 016683          212 ANANIV-AGGATPLHIAADIGS-----TEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (384)
Q Consensus       212 ~~~~~~-~~g~t~L~~A~~~~~-----~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (384)
                      ++++.. ..|+||||+|+..++     .+++++|+++|++++.+|..|.||||+|+.+|+.+++++|++++
T Consensus       131 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            555554 456677777776666     77777777777777777777778888887777777777777653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.8e-36  Score=270.85  Aligned_cols=219  Identities=25%  Similarity=0.367  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCc
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   92 (384)
                      ...++|+.||..|++++|++|++.    |.++     +..|..|.||||+|+..|+.+++++|++. |++++..|..|.|
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~----g~~~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t  108 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLER----GADI-----NYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWI  108 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH----CCCT-----TCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHc----CCCC-----cccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCc
Confidence            456789999999999999999987    4443     56788999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCC----------------------
Q 016683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK-GAEV----------------------  149 (384)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~----------------------  149 (384)
                      |||+|+..|+.++|++|+++|++++..+..|.||||+|+..++.+++++++.. +.++                      
T Consensus       109 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (299)
T 1s70_B          109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG  188 (299)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999877653 2221                      


Q ss_pred             -----CCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchH
Q 016683          150 -----DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATP  223 (384)
Q Consensus       150 -----~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~  223 (384)
                           .....+.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.. ..|.||
T Consensus       189 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~  268 (299)
T 1s70_B          189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA  268 (299)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             CcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence                 12234559999999999999999999999999999999999999999999999999999999999987 789999


Q ss_pred             HHHHHhhCCHHHHHHHHHC
Q 016683          224 LHIAADIGSTEIIKCLLKA  242 (384)
Q Consensus       224 L~~A~~~~~~~~v~~Ll~~  242 (384)
                      ||+|+.. ..+.++.+++.
T Consensus       269 l~~A~~~-~~~~l~~l~~~  286 (299)
T 1s70_B          269 FDVADED-ILGYLEELQKK  286 (299)
T ss_dssp             TTSCCSG-GGHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHH
Confidence            9999764 45555666553

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.5e-35  Score=250.27  Aligned_cols=188  Identities=22%  Similarity=0.229  Sum_probs=138.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCC
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQ  167 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~  167 (384)
                      .+.||||.|+..|+.++++.|+..+. +++..|..|.||||+                                |+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--------------------------------A~~~~~   51 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI--------------------------------AVHNND   51 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH--------------------------------HHHHTC
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH--------------------------------HHHcCC
Confidence            45556666666666666655555544 555555555555555                                555555


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCC-C
Q 016683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI-QAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAG-A  244 (384)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll-~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a  244 (384)
                      .+++++|+++|++++..+..|.||||+|+..|+.+++++|+ ..+.+++.. ..|.||||+|+..|+.+++++|++.| +
T Consensus        52 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  131 (201)
T 3hra_A           52 IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE  131 (201)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            55555566666666777788999999999999999999999 556688776 77999999999999999999999999 9


Q ss_pred             CCCCCCCCCCcHHHHHHHcCC-----HHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhHHHHHhhhhc
Q 016683          245 DPNVTDEDGQKPIQVAAARGN-----REAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKEN  311 (384)
Q Consensus       245 ~~~~~~~~g~t~l~~A~~~~~-----~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  311 (384)
                      +++.+|..|.||||+|+..++     .+++++|++.+... +..+..+.+.  +..+......+..+.+.+.
T Consensus       132 ~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~--l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTA--MDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-TCCCTTSCCH--HHHHHHHTCHHHHHHHHTC
T ss_pred             CcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC-CccCCCCCCH--HHHHHHcCCHhHHHHHHhc
Confidence            999999999999999999998     99999999987543 3333334444  4444555666777766654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.1e-37  Score=268.60  Aligned_cols=196  Identities=28%  Similarity=0.323  Sum_probs=178.0

Q ss_pred             cCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CH
Q 016683           84 DTQDEDGETPLLHAARQGHTETAKYLFEHGA----NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TP  158 (384)
Q Consensus        84 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~  158 (384)
                      +.+|..|.||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|+++|++++..+..+ ||
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP   81 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            3568899999999999999999999998765    789999999999999999999999999999999998877655 99


Q ss_pred             hHHHHHcCCHHHHHHHHhCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-C-CCchHHHHHHhh
Q 016683          159 LIWAAGHGQQEAVKVLLEHHAN------PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-A-GGATPLHIAADI  230 (384)
Q Consensus       159 l~~A~~~~~~~~~~~Ll~~~~~------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~-~g~t~L~~A~~~  230 (384)
                      ||+|+..|+.+++++|++.+.+      ++..+..|.||||+|+..|+.+++++|+++|++++.. . .|.||||+|+..
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~  161 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  161 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence            9999999999999999999876      4667788999999999999999999999999999987 4 899999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 016683          231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED  279 (384)
Q Consensus       231 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  279 (384)
                      |+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|++++...
T Consensus       162 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             CCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence            9999999999999999999999999999999999999999999988753

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.3e-36  Score=269.58  Aligned_cols=205  Identities=25%  Similarity=0.305  Sum_probs=126.4

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHHh---CCCCCc----CCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCC--
Q 016683           50 DIKDANKRGALHFAAREGKTDVCKYLLEE---LKLDVD----TQDEDGETPLLHAARQ---GHTETAKYLFEHGANPT--  117 (384)
Q Consensus        50 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---~~~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~--  117 (384)
                      +..|..|.||||.|+..|+.++|+.|++.   .+.+++    ..+..|.||||+|+..   |+.++|++|+++|+++.  
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            45688899999999999999999988873   466665    4588999999999987   99999999999876532  


Q ss_pred             ---------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC---------------CCCHhHHHHHcCCHHHHHH
Q 016683          118 ---------IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESD---------------AGTPLIWAAGHGQQEAVKV  173 (384)
Q Consensus       118 ---------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~---------------~~~~l~~A~~~~~~~~~~~  173 (384)
                               ..|..|.||||+|+..|+.+++++|+++|++++..+.               +.||||+|+..|+.+++++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF  166 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                     2456788888888888888888888888888877664               2255555555555555555


Q ss_pred             HHh---CCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCccc-------c-CCCchHHHHHHhhCCH
Q 016683          174 LLE---HHANPNAETEDNITPLLSAVAAGS---------LTCLDLLIQAGANANI-------V-AGGATPLHIAADIGST  233 (384)
Q Consensus       174 Ll~---~~~~~~~~~~~g~t~l~~A~~~~~---------~~~v~~Ll~~g~~~~~-------~-~~g~t~L~~A~~~~~~  233 (384)
                      |++   .|++++.+|..|.||||+|+..|+         .+++++|+++|++++.       . ..|+||||+|+..|+.
T Consensus       167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~  246 (273)
T 2pnn_A          167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI  246 (273)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence            555   445555555555555555554444         4444444444444431       1 3344444444444444


Q ss_pred             HHHHHHHHCCC-CCCCCCCCCC
Q 016683          234 EIIKCLLKAGA-DPNVTDEDGQ  254 (384)
Q Consensus       234 ~~v~~Ll~~ga-~~~~~~~~g~  254 (384)
                      +++++|+++|+ |+......+.
T Consensus       247 ~iv~~Ll~~ga~dp~~~~~~~~  268 (273)
T 2pnn_A          247 GVLAYILQREIHEPECRHAAAH  268 (273)
T ss_dssp             HHHHHHHHHHTC----------
T ss_pred             HHHHHHHHCCCCCchhhhhhhh
Confidence            44444444444 3444333333

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=3.5e-37  Score=280.15  Aligned_cols=231  Identities=23%  Similarity=0.269  Sum_probs=176.6

Q ss_pred             CChHHHHHHHHHhhhcCCCccchhh--------hcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcC-CCCCCCcHHH
Q 016683           25 GNLDLLKKIAKQLDDQGKGLSKTVA--------DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDT-QDEDGETPLL   95 (384)
Q Consensus        25 g~~~~v~~ll~~~~~~~~~~~~~~~--------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~   95 (384)
                      |+.++|+.|+++..+.+........        ..+.....+.+|.|+..+..+++++|++. |+++|. +|..|.||||
T Consensus        58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-g~dvn~~~d~~g~TpLh  136 (327)
T 1sw6_A           58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT-QLNLNIPVDEHGNTPLH  136 (327)
T ss_dssp             HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTS-CCCSCSCCSTTCCCHHH
T ss_pred             chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc-CCCcccccCCCCCcHHH
Confidence            8999999999885432211000000        00111223346888888888999999987 999999 8999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHhCC-CCCCCCCCCC-CHhHHHHH----cC
Q 016683           96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN---IELLTYLLSKG-AEVDSESDAG-TPLIWAAG----HG  166 (384)
Q Consensus        96 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~~~-~~~~~~~~~~-~~l~~A~~----~~  166 (384)
                      +|+..|+.++|++|+++|++++..|..|.||||+|+..|+   .++++.|++.+ .+++..+..+ ||||+|+.    .|
T Consensus       137 ~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g  216 (327)
T 1sw6_A          137 WLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG  216 (327)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccc
Confidence            9999999999999999999999999999999999999998   67777777776 5566665555 99999999    99


Q ss_pred             CHHHHHHHHhC--------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHH
Q 016683          167 QQEAVKVLLEH--------------------HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLH  225 (384)
Q Consensus       167 ~~~~~~~Ll~~--------------------~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~  225 (384)
                      +.+++++|++.                    |++++..+..|.||||.|+.      +++|++++  ++.. ..|+||||
T Consensus       217 ~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~--~n~~d~~G~TpLh  288 (327)
T 1sw6_A          217 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANM--LNAQDSNGDTCLN  288 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHHT--TTCCCTTSCCHHH
T ss_pred             cHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhC--CCCCCCCCCCHHH
Confidence            99999999987                    89999999999999999985      89999984  5555 77999999


Q ss_pred             HHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 016683          226 IAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG  264 (384)
Q Consensus       226 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  264 (384)
                      +|+..|+.++|++|+++|++++.+|..|+||||+|+.+|
T Consensus       289 ~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          289 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            999999999999999999999999999999999998765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=5.4e-36  Score=262.98  Aligned_cols=203  Identities=20%  Similarity=0.240  Sum_probs=153.4

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHhCCCCCcC----CCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCC----
Q 016683           55 NKRGALHFAAREGKTD----VCKYLLEELKLDVDT----QDEDGETPLLHAARQ---GHTETAKYLFEHGANPTIP----  119 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~----  119 (384)
                      .|+||||.|+..|+.+    ++++|++. |++++.    .|..|.||||+|+..   |+.++|++|+++|++++..    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWN-SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHc-CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            3789999999999997    56677767 899998    889999999999999   9999999999988877643    


Q ss_pred             -------CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH
Q 016683          120 -------SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL  192 (384)
Q Consensus       120 -------~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l  192 (384)
                             |..|.||||+|+..|+.+++++|+++|++++..+..+.                   ...+.+..+..|.|||
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~-------------------~~~~~~~~~~~g~tpL  140 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF-------------------FQKHQGTCFYFGELPL  140 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG-------------------GSCCSSSCCCSCSSHH
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccc-------------------ccccccccccCCCCHH
Confidence                   35678888888888888888888888777766554321                   0012222333477777


Q ss_pred             HHHHHcCCHHHHHHHHH---cCCCcccc-CCCchHHHHHHh--hCCHH-------HHHHHHHCCCCC-------CCCCCC
Q 016683          193 LSAVAAGSLTCLDLLIQ---AGANANIV-AGGATPLHIAAD--IGSTE-------IIKCLLKAGADP-------NVTDED  252 (384)
Q Consensus       193 ~~A~~~~~~~~v~~Ll~---~g~~~~~~-~~g~t~L~~A~~--~~~~~-------~v~~Ll~~ga~~-------~~~~~~  252 (384)
                      |+|+..|+.+++++|++   +|++++.. ..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..
T Consensus       141 ~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~  220 (256)
T 2etb_A          141 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ  220 (256)
T ss_dssp             HHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTT
T ss_pred             HHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCC
Confidence            77777777777777777   77777766 667777777777  66766       888888888877       778888


Q ss_pred             CCcHHHHHHHcCCHHHHHhhcCCCC
Q 016683          253 GQKPIQVAAARGNREAVEILFPLTS  277 (384)
Q Consensus       253 g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (384)
                      |+||||+|+..|+.+++++|++++.
T Consensus       221 g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          221 GLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            8888888888888888888887654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=5.1e-36  Score=263.14  Aligned_cols=202  Identities=21%  Similarity=0.236  Sum_probs=153.3

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHCCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCC
Q 016683           89 DGETPLLHAARQGHTE----TAKYLFEHGANPTI----PSNLGATALHHSAGI---GNIELLTYLLSKGAEVDSESDAGT  157 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~  157 (384)
                      .|+||||.|+..|+.+    ++++|+++|++++.    .|..|.||||+|+..   |+.+++++|++.|++++....   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~---   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP---   77 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC---
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh---
Confidence            3789999999999997    66777889999998    899999999999999   999999999998877653221   


Q ss_pred             HhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC--------------CCchH
Q 016683          158 PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA--------------GGATP  223 (384)
Q Consensus       158 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------~g~t~  223 (384)
                                      ++.  ......+..|.||||+|+..|+.+++++|+++|++++...              .|.||
T Consensus        78 ----------------~~~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tp  139 (256)
T 2etb_A           78 ----------------LVN--AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP  139 (256)
T ss_dssp             ----------------GGG--CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSH
T ss_pred             ----------------hcc--cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCH
Confidence                            000  1112233456666666666666666666666666666552              29999


Q ss_pred             HHHHHhhCCHHHHHHHHH---CCCCCCCCCCCCCcHHHHHHH--cCCHH-------HHHhhcCCCCCCC------CCCCC
Q 016683          224 LHIAADIGSTEIIKCLLK---AGADPNVTDEDGQKPIQVAAA--RGNRE-------AVEILFPLTSEDP------SIPKW  285 (384)
Q Consensus       224 L~~A~~~~~~~~v~~Ll~---~ga~~~~~~~~g~t~l~~A~~--~~~~~-------~v~~Ll~~~~~~~------~~~~~  285 (384)
                      ||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.  .++.+       ++++|++.+....      ...+.
T Consensus       140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~  219 (256)
T 2etb_A          140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH  219 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCT
T ss_pred             HHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCC
Confidence            999999999999999999   999999999999999999999  88888       9999998876442      23333


Q ss_pred             chhhHHHHHHhhhchhHHHHHhhhhcCC
Q 016683          286 TVDGILEYMQSESGKQLEETRNLKENNA  313 (384)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~  313 (384)
                      .  +.+++..+......+..+.+.+.+.
T Consensus       220 ~--g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          220 Q--GLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             T--SCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             C--CCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            3  4444555566667777777776544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.6e-34  Score=236.32  Aligned_cols=157  Identities=39%  Similarity=0.553  Sum_probs=121.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 016683           58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE  137 (384)
Q Consensus        58 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  137 (384)
                      +.|+.||+.|+.++|++|++. |+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            368888888888888888887 8888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 016683          138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN  215 (384)
Q Consensus       138 ~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~  215 (384)
                      ++++|+++|++++..+..+ ||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        85 ~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A           85 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            8888888777777665544 77777777777777777777777777777777777777777777777777777666665

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.7e-34  Score=236.23  Aligned_cols=156  Identities=38%  Similarity=0.578  Sum_probs=117.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHH
Q 016683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA  170 (384)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~  170 (384)
                      ++|+.||..|+.++|++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++..+..+ ||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            46889999999999999999999999999999999999988888888888888888777666544 77777777777777


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCC
Q 016683          171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN  247 (384)
Q Consensus       171 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  247 (384)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.. ..|+||||+|+..|+.+++++|+++|++++
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            77777777777777777777777777777777777777777766655 556677777777777777777777776654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=8.7e-36  Score=264.20  Aligned_cols=205  Identities=20%  Similarity=0.251  Sum_probs=173.8

Q ss_pred             CCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHH----CCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCC
Q 016683           80 KLDVDTQDEDGETPLLHAARQGHTETAKYLFE----HGANPT----IPSNLGATALHHSAGI---GNIELLTYLLSKGAE  148 (384)
Q Consensus        80 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~----~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~  148 (384)
                      ++..+..|..|.||||.|+..|+.++|+.|++    .+++++    ..|..|.||||+|+..   |+.+++++|++.|++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            45566788999999999999999999988886    566665    4588999999999987   999999999999864


Q ss_pred             C-------CC----C-CCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCC--------------CCCCHHHHHHHcCCHH
Q 016683          149 V-------DS----E-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETE--------------DNITPLLSAVAAGSLT  202 (384)
Q Consensus       149 ~-------~~----~-~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~--------------~g~t~l~~A~~~~~~~  202 (384)
                      .       +.    . ..+.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..|+.+
T Consensus        83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  162 (273)
T 2pnn_A           83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA  162 (273)
T ss_dssp             TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred             ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence            2       11    2 2455999999999999999999999999999987              7999999999999999


Q ss_pred             HHHHHHH---cCCCcccc-CCCchHHHHHHhhCC---------HHHHHHHHHCCCCCC-------CCCCCCCcHHHHHHH
Q 016683          203 CLDLLIQ---AGANANIV-AGGATPLHIAADIGS---------TEIIKCLLKAGADPN-------VTDEDGQKPIQVAAA  262 (384)
Q Consensus       203 ~v~~Ll~---~g~~~~~~-~~g~t~L~~A~~~~~---------~~~v~~Ll~~ga~~~-------~~~~~g~t~l~~A~~  262 (384)
                      ++++|++   .|++++.. ..|+||||+|+..|+         .+++++|+++|++++       .+|..|+||||+|+.
T Consensus       163 ~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~  242 (273)
T 2pnn_A          163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS  242 (273)
T ss_dssp             HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHH
Confidence            9999999   99999987 789999999999998         899999999999987       589999999999999


Q ss_pred             cCCHHHHHhhcCCCCCCCCCCC
Q 016683          263 RGNREAVEILFPLTSEDPSIPK  284 (384)
Q Consensus       263 ~~~~~~v~~Ll~~~~~~~~~~~  284 (384)
                      .|+.+++++|++++..++....
T Consensus       243 ~g~~~iv~~Ll~~ga~dp~~~~  264 (273)
T 2pnn_A          243 SGKIGVLAYILQREIHEPECRH  264 (273)
T ss_dssp             TTCHHHHHHHHHHHTC------
T ss_pred             hChHHHHHHHHHCCCCCchhhh
Confidence            9999999999999887665544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=6.2e-34  Score=250.36  Aligned_cols=207  Identities=21%  Similarity=0.206  Sum_probs=141.6

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHH----hCCCCCcCCC----CCCCcHHHHHH---HcCCHHHHHHHHHCCCC------
Q 016683           53 DANKRGALHFAAREGKTDVCKYLLE----ELKLDVDTQD----EDGETPLLHAA---RQGHTETAKYLFEHGAN------  115 (384)
Q Consensus        53 d~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~----~~g~t~L~~A~---~~g~~~~v~~Ll~~g~~------  115 (384)
                      +..|.|+||.|+..|+.+.++.|++    . +.+++..+    ..|.||||+|+   ..|+.++|++|++.|++      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            3467889999999999985554444    5 88888665    67999999998   67999999999988754      


Q ss_pred             -----CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC
Q 016683          116 -----PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNIT  190 (384)
Q Consensus       116 -----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t  190 (384)
                           .+..|..|.||||+|+..|+.+++++|+++|++++..+.+..                  -...+....+..|.|
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~------------------~~~~~~~~~~~~g~t  142 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF------------------FQPKDEGGYFYFGEL  142 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECC------------------CSSSCCCCSCCSCSS
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccc------------------cCcccccccccCCCC
Confidence                 233344677777777777777777777777766665542100                  000111122245667


Q ss_pred             HHHHHHHcCCHHHHHHHHH---cCCCcccc-CCCchHHHHHHhhCC---------HHHHHHHHHCCCCC-------CCCC
Q 016683          191 PLLSAVAAGSLTCLDLLIQ---AGANANIV-AGGATPLHIAADIGS---------TEIIKCLLKAGADP-------NVTD  250 (384)
Q Consensus       191 ~l~~A~~~~~~~~v~~Ll~---~g~~~~~~-~~g~t~L~~A~~~~~---------~~~v~~Ll~~ga~~-------~~~~  250 (384)
                      |||+|+..|+.+++++|++   .|++++.. ..|+||||+|+..++         .+++++|+++|+++       +.+|
T Consensus       143 pL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d  222 (260)
T 3jxi_A          143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN  222 (260)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhccc
Confidence            7777777777777777777   66666665 567777777776665         57777777777776       5677


Q ss_pred             CCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 016683          251 EDGQKPIQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       251 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                      ..|+||||+|+..|+.+++++|++++..
T Consensus       223 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          223 NDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            7777777777777777777777776553

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-35  Score=268.76  Aligned_cols=251  Identities=17%  Similarity=0.108  Sum_probs=192.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCC--------
Q 016683           15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ--------   86 (384)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--------   86 (384)
                      .+....++.....+++++|++.    |.++     +..+..|.|+++     |+.++|++|+++ |++++..        
T Consensus        20 ~~~~~~~~~~~~~dlv~~ll~~----ga~i-----~~~~~~g~~~~~-----g~~~~v~~Ll~~-g~~~~~~~~~~a~~~   84 (327)
T 1sw6_A           20 NDRTAGPIITFTHDLTSDFLSS----PLKI-----MKALPSPVVNDN-----EQKMKLEAFLQR-LLFPEIQEMPTSLNN   84 (327)
T ss_dssp             -----CCEEECCTTCCCSTTTS----SCCC-----EECBCCCCCCCH-----HHHHHHHHHHHH-HHC------------
T ss_pred             ccccccchhhhcCchHHHHhhC----Cccc-----ccCCCCCCcccC-----chhHHHHHHHHh-ccCCccccchHhhhc
Confidence            3444445555666778887776    5554     567788999987     999999999998 8776541        


Q ss_pred             ---------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 016683           87 ---------DEDGETPLLHAARQGHTETAKYLFEHGANPTI-PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG  156 (384)
Q Consensus        87 ---------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  156 (384)
                               .....+.+|+|+..+..+++++|++.|++++. .|..|.||||+|+..|+.+++++|+++|++++..+..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g  164 (327)
T 1sw6_A           85 DSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG  164 (327)
T ss_dssp             -------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTC
T ss_pred             ccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence                     11122345888888889999999999999999 89999999999999999999999999999999877665


Q ss_pred             -CHhHHHHHcCC---HHHHHHHHhCC-CCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHc-----------------
Q 016683          157 -TPLIWAAGHGQ---QEAVKVLLEHH-ANPNAETEDNITPLLSAVA----AGSLTCLDLLIQA-----------------  210 (384)
Q Consensus       157 -~~l~~A~~~~~---~~~~~~Ll~~~-~~~~~~~~~g~t~l~~A~~----~~~~~~v~~Ll~~-----------------  210 (384)
                       ||||+|+..|+   .++++.|++.+ .+++..+..|.||||+|+.    .|+.+++++|++.                 
T Consensus       165 ~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~  244 (327)
T 1sw6_A          165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT  244 (327)
T ss_dssp             CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-
T ss_pred             CCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhh
Confidence             99999999998   67777777776 6789999999999999999    8999999999987                 


Q ss_pred             ---CCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCc
Q 016683          211 ---GANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWT  286 (384)
Q Consensus       211 ---g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  286 (384)
                         |++++.. ..|.||||.|+.      +++|+++  +++.+|..|+||||+|+..|+.+++++|++++... ...+..
T Consensus       245 ~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~-~~~d~~  315 (327)
T 1sw6_A          245 NEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP-FIANKS  315 (327)
T ss_dssp             ---------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             hcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCC
Confidence               7888877 789999999986      8999998  68999999999999999999999999999987653 333333


Q ss_pred             hhh
Q 016683          287 VDG  289 (384)
Q Consensus       287 ~~~  289 (384)
                      +.+
T Consensus       316 G~T  318 (327)
T 1sw6_A          316 GLR  318 (327)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            333

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=5e-34  Score=250.98  Aligned_cols=206  Identities=17%  Similarity=0.222  Sum_probs=158.2

Q ss_pred             CCCCCcHHHHHHHcCCHHH----HHHHHHCCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHhCCCCCCCCCCC
Q 016683           87 DEDGETPLLHAARQGHTET----AKYLFEHGANPTIPS----NLGATALHHSA---GIGNIELLTYLLSKGAEVDSESDA  155 (384)
Q Consensus        87 ~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~----~~g~t~L~~A~---~~~~~~~~~~Ll~~~~~~~~~~~~  155 (384)
                      +..|+|+||.|+..|+.++    +++|++.|++++..+    ..|.||||+|+   ..|+.+++++|++.|++....   
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~---   78 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM---   78 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH---
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch---
Confidence            4578899999999999995    455555899988665    66999999998   679999999999887553210   


Q ss_pred             CCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC---------------CC
Q 016683          156 GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA---------------GG  220 (384)
Q Consensus       156 ~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~---------------~g  220 (384)
                                      ..++  ..+.+..+..|.||||+|+..|+.+++++|+++|++++...               .|
T Consensus        79 ----------------~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g  140 (260)
T 3jxi_A           79 ----------------REFI--NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFG  140 (260)
T ss_dssp             ----------------HHHH--TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSC
T ss_pred             ----------------Hhhh--cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCC
Confidence                            0111  23344455577888888888888888888888888777663               69


Q ss_pred             chHHHHHHhhCCHHHHHHHHH---CCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHhhcCCCCCCC------CC
Q 016683          221 ATPLHIAADIGSTEIIKCLLK---AGADPNVTDEDGQKPIQVAAARGN---------REAVEILFPLTSEDP------SI  282 (384)
Q Consensus       221 ~t~L~~A~~~~~~~~v~~Ll~---~ga~~~~~~~~g~t~l~~A~~~~~---------~~~v~~Ll~~~~~~~------~~  282 (384)
                      .||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..++         .+++++|++.+....      ..
T Consensus       141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~  220 (260)
T 3jxi_A          141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL  220 (260)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhc
Confidence            999999999999999999999   999999999999999999999888         799999998865432      22


Q ss_pred             CCCchhhHHHHHHhhhchhHHHHHhhhhcCCCC
Q 016683          283 PKWTVDGILEYMQSESGKQLEETRNLKENNAPK  315 (384)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (384)
                      .+  ..+.+++..+......+.++.+++.+...
T Consensus       221 ~d--~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          221 LN--NDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             CC--TTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cc--CCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence            33  33445555566677788888887765533

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=5.3e-32  Score=226.90  Aligned_cols=163  Identities=28%  Similarity=0.355  Sum_probs=129.9

Q ss_pred             hhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q 016683           48 VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL  127 (384)
Q Consensus        48 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L  127 (384)
                      +.+.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            3466788899999999999999999999987 888888888899999999999999999999998888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 016683          128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL  206 (384)
Q Consensus       128 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~  206 (384)
                      |+|+..|+.+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||+++|+..|+.+++++
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence            88888888888888888887776655444 77777777777777777777777777777777777777777777777666


Q ss_pred             HHHcC
Q 016683          207 LIQAG  211 (384)
Q Consensus       207 Ll~~g  211 (384)
                      |+++|
T Consensus       186 Ll~~~  190 (192)
T 2rfm_A          186 FTEVR  190 (192)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            66643

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=244.27  Aligned_cols=195  Identities=22%  Similarity=0.287  Sum_probs=145.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCC--CcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHH
Q 016683           55 NKRGALHFAAREGKTDVCKYLLEELKLD--VDTQDEDGETPLLHAARQGHTETAKYLFEHGA-NPTIPSNLGATALHHSA  131 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~  131 (384)
                      ...+++|.|+..|+++.++.+++. +.+  +|..|..|+||||+|+..|+.++|++|++.|+ +++..+..|.||||+|+
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSAR-LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHH-HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHH-HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence            456677777777888777777765 433  67777778888888888888888888888777 77777777777777776


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 016683          132 GIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG  211 (384)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g  211 (384)
                      ...                           +...++.+++++|++.|.+.+..+..|.||||+|+..|+.+++++|+++|
T Consensus       154 ~~~---------------------------~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g  206 (276)
T 4hbd_A          154 LAT---------------------------LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACE  206 (276)
T ss_dssp             GCC---------------------------CCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHH---------------------------hhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            210                           00234555666666666666666677777777777777777777777777


Q ss_pred             CCcccc-CCCchHHHHHHhhCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 016683          212 ANANIV-AGGATPLHIAADIGSTEIIKCLLK-AGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (384)
Q Consensus       212 ~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (384)
                      ++++.. ..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++..
T Consensus       207 ad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          207 ADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            777766 678888888888888888888888 788888888888888888888888888888886543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=6.3e-33  Score=245.99  Aligned_cols=186  Identities=20%  Similarity=0.290  Sum_probs=140.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCC-CCCCCCCCCCCHHHHHH----
Q 016683          125 TALHHSAGIGNIELLTYLLSKGAE--VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA-NPNAETEDNITPLLSAV----  196 (384)
Q Consensus       125 t~L~~A~~~~~~~~~~~Ll~~~~~--~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~A~----  196 (384)
                      +++|.|+..++.+.++.+++.+.+  ++..+..+ ||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            344555555555555555444333  33333333 66666666677777777777776 77888888999999999    


Q ss_pred             -HcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcC
Q 016683          197 -AAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFP  274 (384)
Q Consensus       197 -~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  274 (384)
                       ..++.+++++|++.|.+++.. ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA  237 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence             668899999999999888776 679999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCchhhHHHHHHhhhchhHHHHHhhhhcC
Q 016683          275 LTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENN  312 (384)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  312 (384)
                      ..+.+.+..+..+.+.+.  .+......+..+.+.+..
T Consensus       238 ~~gad~~~~d~~g~TpL~--~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          238 VPSCDISLTDRDGSTALM--VALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             STTCCTTCCCTTSCCHHH--HHHHHTCHHHHHHHHHHC
T ss_pred             cCCCCCcCcCCCCCCHHH--HHHHcCCHHHHHHHHhcc
Confidence            545555555555544444  445556677777666543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.98  E-value=1.3e-31  Score=224.52  Aligned_cols=161  Identities=29%  Similarity=0.348  Sum_probs=116.6

Q ss_pred             CcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHH
Q 016683           83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWA  162 (384)
Q Consensus        83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A  162 (384)
                      +|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++            
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------   95 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN------------   95 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT------------
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC------------
Confidence            46778889999999999999999999999999888888888888888887777777777776665554            


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHH
Q 016683          163 AGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLK  241 (384)
Q Consensus       163 ~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~  241 (384)
                                          ..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|++
T Consensus        96 --------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  155 (192)
T 2rfm_A           96 --------------------TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE  155 (192)
T ss_dssp             --------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             --------------------CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                44445555555565556666666666666555554 456667777777777777777777


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 016683          242 AGADPNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (384)
Q Consensus       242 ~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (384)
                      +|++++.+|..|.||+++|+..|+.+++++|+++
T Consensus       156 ~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          156 LGADISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            7777777777777777777777777777776653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=1.6e-31  Score=219.89  Aligned_cols=169  Identities=26%  Similarity=0.374  Sum_probs=115.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 016683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (384)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  135 (384)
                      +.||||.|+..|+.+++++|++..+..++..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            46788889999999988888887444478888888889998888888888888888888888888888888888777777


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 016683          136 IELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN  215 (384)
Q Consensus       136 ~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~  215 (384)
                      .+++++|+++|++++                                ..+..|.||||+|+..|+.+++++|+++|++++
T Consensus        82 ~~~v~~Ll~~g~~~~--------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  129 (172)
T 3v30_A           82 TDIVGLLLERDVDIN--------------------------------IYDWNGGTPLLYAVRGNHVKCVEALLARGADLT  129 (172)
T ss_dssp             HHHHHHHHTTTCCTT--------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHcCCCCC--------------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            777776666665554                                444455555555555555555555555555555


Q ss_pred             cc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcH
Q 016683          216 IV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP  256 (384)
Q Consensus       216 ~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  256 (384)
                      .. ..|.||||+|+..|+.+++++|+++|+++...+..|.||
T Consensus       130 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          130 TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             ccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            44 446666666666666666666666666666666666555

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=1.2e-31  Score=220.66  Aligned_cols=154  Identities=29%  Similarity=0.453  Sum_probs=120.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCC-CCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 016683          125 TALHHSAGIGNIELLTYLLSKGAE-VDSESDA-GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT  202 (384)
Q Consensus       125 t~L~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~-~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  202 (384)
                      ||||.|+..|+.+++++|++.+.. ++..+.. .||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   83 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD   83 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHH
Confidence            344444444444444444444433 2222222 25555555556666666666667777778888999999999999999


Q ss_pred             HHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 016683          203 CLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       203 ~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                      ++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++..
T Consensus        84 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (172)
T 3v30_A           84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK  160 (172)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence            999999999999987 7899999999999999999999999999999999999999999999999999999987654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=4.8e-31  Score=215.96  Aligned_cols=158  Identities=27%  Similarity=0.392  Sum_probs=127.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 016683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG  134 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  134 (384)
                      .|.||||.|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            578999999999999999999988 8889999999999999999999999999999999999988888889988888888


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 016683          135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN  213 (384)
Q Consensus       135 ~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~  213 (384)
                      +.+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++++.+
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence            8888888888887777655444 777777777777777777777777777777777777777777777777666665543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.98  E-value=5.9e-31  Score=215.90  Aligned_cols=159  Identities=32%  Similarity=0.438  Sum_probs=125.5

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 016683           52 KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA  131 (384)
Q Consensus        52 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  131 (384)
                      ....+.++|+.|+..|+.+++++|++. |++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            345577899999999999999999987 8999999999999999999999999999999999999988888899988888


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 016683          132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (384)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  210 (384)
                      ..|+.+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++.
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            8888888888888887776655444 777777777777777777777777776666666666666666666666666655


Q ss_pred             C
Q 016683          211 G  211 (384)
Q Consensus       211 g  211 (384)
                      |
T Consensus       169 G  169 (169)
T 2y1l_E          169 N  169 (169)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=4.6e-31  Score=214.86  Aligned_cols=155  Identities=29%  Similarity=0.368  Sum_probs=98.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 016683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (384)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  135 (384)
                      ..||||.|+..|+.+++++|++. |++++..+..|.||||+|+. |+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45677777777777777777775 77777777777777777777 77777777777777777777777777777777776


Q ss_pred             HHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 016683          136 IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHAN-PNAETEDNITPLLSAVAAGSLTCLDLLIQAGA  212 (384)
Q Consensus       136 ~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~  212 (384)
                      .+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|+
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            666666666666555444333 555555555555555555555444 24444444444444444444444444444443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=6.1e-31  Score=214.11  Aligned_cols=156  Identities=28%  Similarity=0.346  Sum_probs=116.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCC
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ  167 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~  167 (384)
                      ...||||.|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|+++|++++..+..+ ||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45688999999999999999999999998888888899888888 88888888888888777665444 77777777777


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccc-CCCchHHHHHHhhCCHHHHHHHHHCCCC
Q 016683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA-NIV-AGGATPLHIAADIGSTEIIKCLLKAGAD  245 (384)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~-~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  245 (384)
                      .+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++. +.. ..|.||||+|+..|+.+++++|+++|+|
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            77777777777777777777777777777777777777777776663 444 5566777777777777777777766654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=2e-30  Score=212.68  Aligned_cols=157  Identities=38%  Similarity=0.550  Sum_probs=109.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcC
Q 016683           87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHG  166 (384)
Q Consensus        87 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~  166 (384)
                      ...+.|+|+.|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|+++                 
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------   73 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-----------------   73 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------
Confidence            345567777777777777777777777777777777777777777666666666666655554                 


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCC
Q 016683          167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGAD  245 (384)
Q Consensus       167 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  245 (384)
                                     +..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++
T Consensus        74 ---------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  138 (169)
T 2y1l_E           74 ---------------NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD  138 (169)
T ss_dssp             ---------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ---------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                           444555666666666666666666666666666555 5567777777777777777777777777


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 016683          246 PNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (384)
Q Consensus       246 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (384)
                      ++.+|..|.|||++|+..|+.+++++|+++
T Consensus       139 ~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          139 VNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            777777777777777777777777777765

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=9.6e-31  Score=214.14  Aligned_cols=155  Identities=24%  Similarity=0.329  Sum_probs=101.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCH
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQ  168 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~  168 (384)
                      .|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.                 
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------------   64 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-----------------   64 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----------------
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-----------------
Confidence            467788888888888888888888888777777777777777777777777777666665554                 


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCC
Q 016683          169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN  247 (384)
Q Consensus       169 ~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  247 (384)
                                     .+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++
T Consensus        65 ---------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  129 (167)
T 3v31_A           65 ---------------LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT  129 (167)
T ss_dssp             ---------------CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ---------------cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                           4444555555555555555555555555555544 445566666666666666666666666666


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 016683          248 VTDEDGQKPIQVAAARGNREAVEILFPL  275 (384)
Q Consensus       248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (384)
                      .+|..|.||+|+|+..|+.+++++|+++
T Consensus       130 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A          130 IETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            6666666666666666666666666544

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.4e-30  Score=215.81  Aligned_cols=163  Identities=23%  Similarity=0.290  Sum_probs=124.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q 016683           54 ANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI  133 (384)
Q Consensus        54 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  133 (384)
                      ..+.++||.||..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            35778999999999999999999987888999999999999999999999999999999999999999999999888888


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 016683          134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA  212 (384)
Q Consensus       134 ~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~  212 (384)
                      |+.+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.|||++|+..++.+++++|+++|+
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            88888888888777776655443 66666666666666666666666666666666666666666555666666666665


Q ss_pred             Cccc
Q 016683          213 NANI  216 (384)
Q Consensus       213 ~~~~  216 (384)
                      +++.
T Consensus       163 ~~~~  166 (179)
T 3f6q_A          163 NLNR  166 (179)
T ss_dssp             CCSC
T ss_pred             Cccc
Confidence            5553

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=8e-31  Score=214.16  Aligned_cols=160  Identities=29%  Similarity=0.379  Sum_probs=137.8

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 016683           52 KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA  131 (384)
Q Consensus        52 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  131 (384)
                      .+..|.|+||.|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            46678999999999999999999999778888999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 016683          132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (384)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  210 (384)
                      ..|+.+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++++.++..|.||+|+|+. ++.+++++|+++
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~  162 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD  162 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred             HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence            9999999999999988887766554 88888888888888888888888888888888888887655 777888887776


Q ss_pred             CC
Q 016683          211 GA  212 (384)
Q Consensus       211 g~  212 (384)
                      |+
T Consensus       163 gA  164 (165)
T 3twr_A          163 AA  164 (165)
T ss_dssp             --
T ss_pred             cc
Confidence            64

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2.6e-30  Score=208.42  Aligned_cols=148  Identities=27%  Similarity=0.375  Sum_probs=109.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 016683          125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL  204 (384)
Q Consensus       125 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v  204 (384)
                      |+|+.|+..|+.+++++|++.|.+++....+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   83 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIV   83 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHH
Confidence            44444444444444444444444444333333555555555666666666666666667777788888888888888888


Q ss_pred             HHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhh
Q 016683          205 DLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL  272 (384)
Q Consensus       205 ~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L  272 (384)
                      ++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus        84 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           84 EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            8888888888766 6788999999999999999999999999999999999999999999999999887

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=8.2e-30  Score=205.47  Aligned_cols=150  Identities=27%  Similarity=0.387  Sum_probs=120.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 016683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (384)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  135 (384)
                      +.|+||.|+..|+.+++++|++. |.+++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            45789999999999999999987 77776 57788999999999999999999999999998888888888888888888


Q ss_pred             HHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 016683          136 IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL  207 (384)
Q Consensus       136 ~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  207 (384)
                      .+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            888888888887777665544 777777777777777777777777777777777777777777777776665

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=1.2e-33  Score=259.62  Aligned_cols=235  Identities=16%  Similarity=0.169  Sum_probs=178.4

Q ss_pred             HHHHHHHHHH-cCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCC---CcCCCCC
Q 016683           14 RVQQFLNAAC-TGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLD---VDTQDED   89 (384)
Q Consensus        14 ~~~~l~~A~~-~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~   89 (384)
                      ....++.|.. .++.++++++++.                +.++.||||+|+..|+.++|++|++. |..   .+..+..
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~----------------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~~~~~~~~~~~  127 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKK----------------GIKSEVICFVAAITGCSSALDTLCLL-LTSDEIVKVIQAE  127 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHH----------------TCCHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHc----------------CCCcCCHHHHHHHcCCHHHHHHHHHc-CCcHHHHHHhccC
Confidence            3445555555 4777777777765                34567999999999999999999987 652   2244567


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC--CCC-CCCHhHHHH
Q 016683           90 GETPLLHAARQGHTETAKYLFEHGANP---TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS--ESD-AGTPLIWAA  163 (384)
Q Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~--~~~-~~~~l~~A~  163 (384)
                      |.||||+|+.+|+.++|++|+++|+++   +..+.. .||||+|+..|+.+++++|+++|++++.  .+. +.||||+|+
T Consensus       128 ~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa  206 (376)
T 2aja_A          128 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA  206 (376)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHH
Confidence            889999999999999999999999763   222223 8999999999999999999999998654  333 349999999


Q ss_pred             -HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCchHHHHHHhhC-----------
Q 016683          164 -GHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIG-----------  231 (384)
Q Consensus       164 -~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~-----------  231 (384)
                       ..|+.+++++|++.|+       .|.|||+.|+..|+.+++++|+++|++++..   .++++.|+..|           
T Consensus       207 ~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~---~~~l~~A~~~g~~~vv~~~~~~  276 (376)
T 2aja_A          207 VGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEM---HDAFKLSNPDGVFDLVTKSECL  276 (376)
T ss_dssp             STTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHH---HTTTTTTSSSSCCCCSSHHHHH
T ss_pred             HHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccc---cHHHHHHHHCCChhhhcHHhhh
Confidence             9999999999999774       2789999999999999999999999876542   12333333333           


Q ss_pred             ----------------CHHHHHHHHHCCC-----CCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 016683          232 ----------------STEIIKCLLKAGA-----DPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (384)
Q Consensus       232 ----------------~~~~v~~Ll~~ga-----~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (384)
                                      ..+.+++|++.+.     +.......+.||||+|+..|+.+++++|++.+
T Consensus       277 ~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~  342 (376)
T 2aja_A          277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP  342 (376)
T ss_dssp             HHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             hhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh
Confidence                            3455666665321     11222345679999999999999999999764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.4e-33  Score=243.02  Aligned_cols=197  Identities=22%  Similarity=0.246  Sum_probs=123.5

Q ss_pred             HHHHHhCCCCCcCCC---CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 016683           73 KYLLEELKLDVDTQD---EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV  149 (384)
Q Consensus        73 ~~Ll~~~~~~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  149 (384)
                      +.|+++ +.+++..+   ..|.||||.|+..|+.++|++|++.|++++..|..|.||||+|+..|+.+++++|++.|+++
T Consensus         2 ~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            2 RSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             eehhcc-CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            344444 44443332   33444566666666666666666666666666666666666666666666666666666665


Q ss_pred             CCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHH--HHcCCHHHHHHHHHcCCCcccc-CCCchHH
Q 016683          150 DSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAET-EDNITPLLSA--VAAGSLTCLDLLIQAGANANIV-AGGATPL  224 (384)
Q Consensus       150 ~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L  224 (384)
                      +..+..+ ||||+|+..|+.+++++|++.|++++..+ ..|.||||+|  +..|+.+++++|+++|++++.. ..|.||+
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l  160 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL  160 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence            5544433 66666666666666666666666666654 4677777777  6777777777777777776665 4566676


Q ss_pred             HHHHhhCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHhhc
Q 016683          225 HIAADIGSTEIIKCLLKAGAD--PNVTDEDGQKPIQVAAARGNREAVEILF  273 (384)
Q Consensus       225 ~~A~~~~~~~~v~~Ll~~ga~--~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  273 (384)
                      +.++..+.   .++|++.|++  ++.+|..|+||||+|+.+|+.++|+.++
T Consensus       161 ~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          161 WDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             SCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             HHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            65444432   2567888888  6788999999999999999999886543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=6e-30  Score=211.90  Aligned_cols=166  Identities=22%  Similarity=0.280  Sum_probs=136.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHc
Q 016683           88 EDGETPLLHAARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGH  165 (384)
Q Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~  165 (384)
                      ..+.++||.|+..|+.++|++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            3577889999999999999999987 66788889999999999999999999999999988888766554 888888888


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCC
Q 016683          166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGA  244 (384)
Q Consensus       166 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga  244 (384)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..++.+++++|++.|+
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            8888888888888888888888888888888888888888888888888776 678888888888888888888888888


Q ss_pred             CCCCCCCCC
Q 016683          245 DPNVTDEDG  253 (384)
Q Consensus       245 ~~~~~~~~g  253 (384)
                      +++..+..+
T Consensus       163 ~~~~~~~~~  171 (179)
T 3f6q_A          163 NLNRIPYKD  171 (179)
T ss_dssp             CCSCBCCCC
T ss_pred             CcccCCccc
Confidence            877665443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.3e-33  Score=243.11  Aligned_cols=187  Identities=20%  Similarity=0.185  Sum_probs=169.2

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 016683           50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHH  129 (384)
Q Consensus        50 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  129 (384)
                      +..+.+|.||||.|+..|+.+++++|++. |++++..|..|.||||+|+..|+.++|++|+++|++++..|..|.||||+
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~   93 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHC   93 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            45577888999999999999999999998 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCC--CCCCHhHHH--HHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 016683          130 SAGIGNIELLTYLLSKGAEVDSES--DAGTPLIWA--AGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD  205 (384)
Q Consensus       130 A~~~~~~~~~~~Ll~~~~~~~~~~--~~~~~l~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~  205 (384)
                      |+..|+.+++++|++.|++++..+  .+.|||++|  +..|+.+++++|++.|++++..+..|.++++.++..+.   .+
T Consensus        94 A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---~~  170 (229)
T 2vge_A           94 AASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DE  170 (229)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---TB
T ss_pred             HHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---cc
Confidence            999999999999999999998874  455999999  99999999999999999999999999999986655543   36


Q ss_pred             HHHHcCCCccc--c-CCCchHHHHHHhhCCHHHHHHHH
Q 016683          206 LLIQAGANANI--V-AGGATPLHIAADIGSTEIIKCLL  240 (384)
Q Consensus       206 ~Ll~~g~~~~~--~-~~g~t~L~~A~~~~~~~~v~~Ll  240 (384)
                      +|++.|++++.  . ..|+||||+|+..|+.++|+.++
T Consensus       171 ~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          171 LSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             CCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             cCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            77888988543  3 66999999999999999987643

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=1.5e-29  Score=204.59  Aligned_cols=153  Identities=25%  Similarity=0.370  Sum_probs=129.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 016683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (384)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  135 (384)
                      +.||||.|+..|+.+++++|++..+.+++..+..|.||||+ +..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            45899999999999999999988667889999999999999 88999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 016683          136 IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (384)
Q Consensus       136 ~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  210 (384)
                      .+++++|+++|++++..+..+ ||||+|+..|+.+++++|++. ++++..+..|.||||+|+..|+.+++++|+++
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            988888888888877666544 888888888888888888877 77777777777777777777777777777653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=1.9e-29  Score=205.96  Aligned_cols=162  Identities=31%  Similarity=0.445  Sum_probs=144.4

Q ss_pred             hhhhhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCC
Q 016683            8 ALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD   87 (384)
Q Consensus         8 ~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~   87 (384)
                      +++-++..++|+.|++.|+++++++|++..        +......+..|.||||+|+..|+.+++++|++. |++++..|
T Consensus         2 ~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~--------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~   72 (165)
T 3twr_A            2 AMGNSEADRQLLEAAKAGDVETVKKLCTVQ--------SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKD   72 (165)
T ss_dssp             ----CHHHHHHHHHHHHTCHHHHHHHCCTT--------TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred             CCCcchhhHHHHHHHHhCCHHHHHHHHHcC--------CCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccC
Confidence            456678889999999999999999999751        223355677899999999999999999999998 99999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcC
Q 016683           88 EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG  166 (384)
Q Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~  166 (384)
                      ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..+ ||+++|+. +
T Consensus        73 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~  151 (165)
T 3twr_A           73 KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-G  151 (165)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-T
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-C
Confidence            999999999999999999999999999999999999999999999999999999999999999877666 99999776 9


Q ss_pred             CHHHHHHHHhCCC
Q 016683          167 QQEAVKVLLEHHA  179 (384)
Q Consensus       167 ~~~~~~~Ll~~~~  179 (384)
                      +.+++++|+++|+
T Consensus       152 ~~~i~~~L~~~gA  164 (165)
T 3twr_A          152 DTDIQDLLRGDAA  164 (165)
T ss_dssp             CHHHHHHHHTC--
T ss_pred             ChHHHHHHhhccc
Confidence            9999999999875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=1.2e-33  Score=259.79  Aligned_cols=238  Identities=17%  Similarity=0.163  Sum_probs=168.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCC---cCCCCCC
Q 016683           14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDV---DTQDEDG   90 (384)
Q Consensus        14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~g   90 (384)
                      ..++||.|++.|+.++|++|++...    .  .......+..|.||||+|+..|+.++|++|++. |+++   +..+.+ 
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga----~--~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~~-  163 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLT----S--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAEN-  163 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC------C--CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHH-
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCC----c--HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCC-
Confidence            3489999999999999999998632    1  111123345678899999999999999999998 7652   222233 


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCcHHHHHH-HcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCC
Q 016683           91 ETPLLHAARQGHTETAKYLFEHGANPTI--PSNLGATALHHSA-GIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQ  167 (384)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~-~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~  167 (384)
                      .||||+|+.+|+.++|++|+++|++++.  .|..|.||||+|+ ..|+.+++++|++.|..      +.|||++|+..|+
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~------~~taL~~Aa~~g~  237 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM------LAYAEIHEFEYGE  237 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH------HHHHHHCTTTTTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc------cchHHHHHHHCCC
Confidence            8999999999999999999999999887  8888999999999 99999999999997742      4599999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC---------------------------CHHHHHHHHHc---------C
Q 016683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAG---------------------------SLTCLDLLIQA---------G  211 (384)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~---------------------------~~~~v~~Ll~~---------g  211 (384)
                      .+++++|+++|++++..+.    +++.|+..|                           ..+.+++|++.         |
T Consensus       238 ~evv~lL~~~ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g  313 (376)
T 2aja_A          238 KYVNPFIARHVNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA  313 (376)
T ss_dssp             TTHHHHHHHHHHHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCC
T ss_pred             HHHHHHHHhcCcccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccC
Confidence            9999999998876543321    222222222                           34556666653         3


Q ss_pred             CCccccCCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 016683          212 ANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (384)
Q Consensus       212 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (384)
                      ++++   .+.||||+|+..|+.+++++|++.|   ..++..|+|++.+|..+|+.++++.-+++
T Consensus       314 ~~~n---~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (376)
T 2aja_A          314 TIPG---DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVALEH  371 (376)
T ss_dssp             SSTT---CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC----------------------
T ss_pred             CCCC---CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHHHH
Confidence            3333   4789999999999999999999864   56677899999999999999998876544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=8.8e-29  Score=200.01  Aligned_cols=152  Identities=28%  Similarity=0.462  Sum_probs=108.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCH
Q 016683           90 GETPLLHAARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQ  168 (384)
Q Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~  168 (384)
                      +.||||.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+                         
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll-------------------------   55 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELL-------------------------   55 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHH-------------------------
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHH-------------------------
Confidence            34666677777777777666666 23666666666666665 5555555555544                         


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCC
Q 016683          169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN  247 (384)
Q Consensus       169 ~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  247 (384)
                             +.|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|+||||+|+..|+.+++++|++. ++++
T Consensus        56 -------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~  127 (156)
T 1bd8_A           56 -------KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH  127 (156)
T ss_dssp             -------HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT
T ss_pred             -------HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC
Confidence                   555555555666777777777777777777777777777665 5678888888888888888888888 8888


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 016683          248 VTDEDGQKPIQVAAARGNREAVEILFPL  275 (384)
Q Consensus       248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (384)
                      .+|..|.||||+|+..|+.+++++|+++
T Consensus       128 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          128 RRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            8888888888888888888888888754

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.7e-30  Score=225.40  Aligned_cols=184  Identities=20%  Similarity=0.269  Sum_probs=100.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 016683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG  134 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  134 (384)
                      .|.||||.|+..|+.++++.|+++ |++++.. ..|.||||.|+..|+.++|++|++.|++++..|..|.||||+|+.  
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~--   79 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAH-GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC--   79 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH--
T ss_pred             cccccCchhhhhhhHHHHHHHhcc-CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH--
Confidence            355555555555555555555554 5555432 445555555555555555555555555555555555555555554  


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 016683          135 NIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA  214 (384)
Q Consensus       135 ~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~  214 (384)
                                                    .|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus        80 ------------------------------~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  129 (239)
T 1ycs_B           80 ------------------------------AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV  129 (239)
T ss_dssp             ------------------------------HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ------------------------------cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence                                          45555555555555666666667777777777777777777777777777


Q ss_pred             ccc-CCCc-hHHHHH--HhhCCHHHHHHHHHCCCCCCCC---------CCCCCcHHHHHHHcCCHHHHHhhcC
Q 016683          215 NIV-AGGA-TPLHIA--ADIGSTEIIKCLLKAGADPNVT---------DEDGQKPIQVAAARGNREAVEILFP  274 (384)
Q Consensus       215 ~~~-~~g~-t~L~~A--~~~~~~~~v~~Ll~~ga~~~~~---------~~~g~t~l~~A~~~~~~~~v~~Ll~  274 (384)
                      +.. ..|. ||||+|  +..|+.+++++|+++|++++..         +..+.++++++...|.  +++.|..
T Consensus       130 ~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~  200 (239)
T 1ycs_B          130 FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHR  200 (239)
T ss_dssp             TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCC
T ss_pred             ceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEe
Confidence            665 3343 888888  6778888888888888877765         6678899988888886  3444443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=8.2e-30  Score=221.17  Aligned_cols=134  Identities=23%  Similarity=0.277  Sum_probs=117.1

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 016683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (384)
Q Consensus        53 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  132 (384)
                      +..|.||||.|+..|+.+++++|++. |++++..|..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+.
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~  112 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS  112 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHH
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            46789999999999999999999987 99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCC-C-CHhHHH--HHcCCHHHHHHHHhCCCCCCCCCCC
Q 016683          133 IGNIELLTYLLSKGAEVDSESDA-G-TPLIWA--AGHGQQEAVKVLLEHHANPNAETED  187 (384)
Q Consensus       133 ~~~~~~~~~Ll~~~~~~~~~~~~-~-~~l~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~  187 (384)
                      .|+.+++++|+++|++++..+.. + ||+|+|  +..|+.+++++|++.|++++..+..
T Consensus       113 ~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~  171 (239)
T 1ycs_B          113 CNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG  171 (239)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGG
T ss_pred             cCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccc
Confidence            99999999999999888766543 3 888887  6777888888888887777665443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=2.4e-27  Score=186.98  Aligned_cols=133  Identities=23%  Similarity=0.249  Sum_probs=78.7

Q ss_pred             CCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-C-C
Q 016683           80 KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA-G-T  157 (384)
Q Consensus        80 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~-~  157 (384)
                      +++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+. |+.+++++|+++|++++..+.. + |
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            34556666666666666666666666666666666666666666666666666 6666666665555555544433 2 5


Q ss_pred             HhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 016683          158 PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN  213 (384)
Q Consensus       158 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~  213 (384)
                      |||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|+|
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            55555555555555555555555555555555665555555555555555555543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=2.1e-27  Score=191.95  Aligned_cols=143  Identities=22%  Similarity=0.294  Sum_probs=108.2

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc-HHH
Q 016683           50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGAT-ALH  128 (384)
Q Consensus        50 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~  128 (384)
                      ...+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+ .|+.+++++|+++|++++..|..|.| |||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH   83 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            34567789999999999999999999987 8999999999999999985 88999999999999999999999998 999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 016683          129 HSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLS  194 (384)
Q Consensus       129 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  194 (384)
                      +|+..|+.+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||.+.
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence            9999888888888888888887766554 88888888888888888888888888888888777653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=6.4e-27  Score=189.10  Aligned_cols=144  Identities=26%  Similarity=0.416  Sum_probs=88.8

Q ss_pred             cCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHH
Q 016683           84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAA  163 (384)
Q Consensus        84 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~  163 (384)
                      +..+..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+ .                              
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~------------------------------   54 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M------------------------------   54 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T------------------------------
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c------------------------------
Confidence            344556677777777777777777777777776666666666665542 4                              


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHH
Q 016683          164 GHGQQEAVKVLLEHHANPNAETEDNIT-PLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLK  241 (384)
Q Consensus       164 ~~~~~~~~~~Ll~~~~~~~~~~~~g~t-~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~  241 (384)
                        |+.+++++|+++|++++..+..|.| |||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|++
T Consensus        55 --~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~  132 (156)
T 1bi7_B           55 --GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  132 (156)
T ss_dssp             --TCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             --CCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHH
Confidence              4455555555555566666667777 777777777788888888888777766 668888888888888888888888


Q ss_pred             CCCCCCCCCCCCCcHHHHH
Q 016683          242 AGADPNVTDEDGQKPIQVA  260 (384)
Q Consensus       242 ~ga~~~~~~~~g~t~l~~A  260 (384)
                      +|++++.++..|.||.+-+
T Consensus       133 ~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          133 AAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             CC-----------------
T ss_pred             cCCCCCccCcCcCcccccC
Confidence            8888888888888887643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=1.4e-26  Score=182.59  Aligned_cols=119  Identities=34%  Similarity=0.438  Sum_probs=72.6

Q ss_pred             CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CC-CchHHHHHHhhCCHH
Q 016683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AG-GATPLHIAADIGSTE  234 (384)
Q Consensus       157 ~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~-g~t~L~~A~~~~~~~  234 (384)
                      ||||+|+..|+.+++++|++.|++++..+..|.||||+|+. ++.+++++|+++|++++.. .. |+||||+|+..|+.+
T Consensus        14 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~   92 (136)
T 1d9s_A           14 AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD   92 (136)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHH
Confidence            44444555555555555555555555555556666666666 6666666666666666555 34 566666666666666


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 016683          235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (384)
Q Consensus       235 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (384)
                      ++++|+++|++++.+|..|.||||+|+..++.+++++|++++
T Consensus        93 ~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           93 TLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            666666666666666666666666666666666666666543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=2.3e-27  Score=197.05  Aligned_cols=160  Identities=16%  Similarity=0.139  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCH----HHHHHHHHhCCCCCcCCCCC
Q 016683           14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKT----DVCKYLLEELKLDVDTQDED   89 (384)
Q Consensus        14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~   89 (384)
                      ..++|+.||+.|+++.++.++..    +..      ...+..|.||||+|+.+|+.    +++++|++. |+++|.+|..
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~----~~~------~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~   74 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEK----GYE------DKESVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKE   74 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHH----SSS------CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTT
T ss_pred             cccHHHHHHHcCCHHHHHHHHhc----Ccc------cccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCC
Confidence            34578888888888888888765    211      11235688888888888875    488888887 8888888888


Q ss_pred             CCcHHHHHHHcCC------HHHHHHHHHCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHH
Q 016683           90 GETPLLHAARQGH------TETAKYLFEHGANPTIPSNLGA-TALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWA  162 (384)
Q Consensus        90 g~t~L~~A~~~g~------~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A  162 (384)
                      |+||||+|+..|+      .+++++|+++|++++.+|..|. ||||+|+..+..+                         
T Consensus        75 g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~-------------------------  129 (186)
T 3t8k_A           75 GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE-------------------------  129 (186)
T ss_dssp             CCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCH-------------------------
T ss_pred             CCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCCh-------------------------
Confidence            8888888888886      5778888888888888888888 8888887643311                         


Q ss_pred             HHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 016683          163 AGHGQQEAVKVLLE-HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG  211 (384)
Q Consensus       163 ~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g  211 (384)
                        .++.+++++|++ +|++++.+|..|.||||+|+..|+.+++++|.+..
T Consensus       130 --~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          130 --NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             --HHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             --hhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence              122355666666 66666666777777777777777777776666543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=2.9e-27  Score=196.37  Aligned_cols=119  Identities=11%  Similarity=0.145  Sum_probs=86.3

Q ss_pred             CHhHHHHHcCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC------HHHHHHHHHcCCCcccc-CCCc-hHH
Q 016683          157 TPLIWAAGHGQQ----EAVKVLLEHHANPNAETEDNITPLLSAVAAGS------LTCLDLLIQAGANANIV-AGGA-TPL  224 (384)
Q Consensus       157 ~~l~~A~~~~~~----~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~------~~~v~~Ll~~g~~~~~~-~~g~-t~L  224 (384)
                      ||||+|+..++.    +++++|+++|++++.++..|+||||+|+..++      .+++++|+++|++++.. ..|+ |||
T Consensus        40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpL  119 (186)
T 3t8k_A           40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF  119 (186)
T ss_dssp             THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTT
T ss_pred             CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHH
Confidence            444444444442    35666666666666666667777777766665      46677777777777766 5566 777


Q ss_pred             HHHHhh-----CCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 016683          225 HIAADI-----GSTEIIKCLLK-AGADPNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (384)
Q Consensus       225 ~~A~~~-----~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (384)
                      |+|+..     ++.+++++|++ +|++++.+|..|+||||+|+..|+.+++++|.++
T Consensus       120 h~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             GGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            777773     34568899998 8999999999999999999999999999888753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=2.8e-25  Score=172.34  Aligned_cols=124  Identities=46%  Similarity=0.674  Sum_probs=85.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 016683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG  134 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  134 (384)
                      +|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            377788888888888888888776 7777777777788888888888888888888777777777777777777777776


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCC
Q 016683          135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA  179 (384)
Q Consensus       135 ~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~  179 (384)
                      +.+++++|+++|++++..+..+ |||++|+..++.+++++|+++|+
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            6666666666666555443322 55555555555555555555444

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=5.8e-25  Score=170.55  Aligned_cols=125  Identities=43%  Similarity=0.627  Sum_probs=99.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCC
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ  167 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~  167 (384)
                      +|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..+ ||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            48899999999999999999999999999888889999999888888888888888888776655444 77777777777


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 016683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN  213 (384)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~  213 (384)
                      .+++++|+++|++++..+..|.|||++|+..++.+++++|+++|++
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            7777777777777777777777777777777777777777776654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=2.1e-25  Score=175.78  Aligned_cols=120  Identities=42%  Similarity=0.598  Sum_probs=110.9

Q ss_pred             CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHH
Q 016683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEI  235 (384)
Q Consensus       157 ~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~  235 (384)
                      ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.++
T Consensus        16 t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~   95 (136)
T 2jab_A           16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI   95 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHH
Confidence            8899999999999999999999999999999999999999999999999999999998877 779999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 016683          236 IKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (384)
Q Consensus       236 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (384)
                      +++|+++|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus        96 v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           96 AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999998653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=2.9e-25  Score=175.00  Aligned_cols=125  Identities=32%  Similarity=0.499  Sum_probs=99.3

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 016683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (384)
Q Consensus        53 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  132 (384)
                      ...+.||||.|+..|+.+++++|++. |++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            44578889999999999999998887 88888888888999999999999999999999888888888888888888888


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCC
Q 016683          133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH  178 (384)
Q Consensus       133 ~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~  178 (384)
                      .|+.+++++|+++|++++..+..+ |||++|+..|+.+++++|++.|
T Consensus        90 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            888888888887777766555433 6666666666666666666653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=1.6e-25  Score=176.67  Aligned_cols=131  Identities=27%  Similarity=0.339  Sum_probs=104.3

Q ss_pred             CCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHH
Q 016683          147 AEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLH  225 (384)
Q Consensus       147 ~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~  225 (384)
                      +++.....+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||
T Consensus         2 ~d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~   81 (137)
T 3c5r_A            2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLH   81 (137)
T ss_dssp             --CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHH
Confidence            33433333446777777777777777777777777778888888888888888888888888888888876 66899999


Q ss_pred             HHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 016683          226 IAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (384)
Q Consensus       226 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (384)
                      +|+..|+.+++++|+++|++++.+|..|.||+++|+..+..+++++|.+..+
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            9999999999999999999999999999999999999999999988876543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=4.6e-25  Score=174.07  Aligned_cols=122  Identities=25%  Similarity=0.392  Sum_probs=66.7

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 016683           52 KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA  131 (384)
Q Consensus        52 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  131 (384)
                      +|..|.||||+|+..|+.+++++|++. |++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            455556666666666666666666554 5555555555666666666666666666666665555555555555555555


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHH
Q 016683          132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL  174 (384)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~L  174 (384)
                      ..|+.+++++|+++|++++..+..+ ||+++|+..+..+++++|
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence            5555555555555555444433332 444444444444444333

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=1.1e-24  Score=189.35  Aligned_cols=140  Identities=28%  Similarity=0.319  Sum_probs=83.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-C-CCCHhHHHHHcC
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-D-AGTPLIWAAGHG  166 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~-~~~~l~~A~~~~  166 (384)
                      .|.||||+|+..|+.++|++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++..+ . +.||||+|+..|
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            34455555555555555555555 45555555555555555555555555555555555554433 2 225566666666


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCchHHHHHHhhCCHHHHHHHHHCCCC
Q 016683          167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGAD  245 (384)
Q Consensus       167 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  245 (384)
                      +.+++++|+++|++++..+..|.||||+|+..++.                ..+.||||+|+..|+.+++++|++.+.+
T Consensus       123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~----------------~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          123 RPEVVEALVELGADIEVEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT----------------CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc----------------cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            66666666666666666777777777777653222                1267888888888888888888876543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=1.8e-24  Score=179.45  Aligned_cols=111  Identities=33%  Similarity=0.399  Sum_probs=84.6

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH
Q 016683           52 KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHHS  130 (384)
Q Consensus        52 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A  130 (384)
                      .+..|.||||.|+..|+.+++++|++  +.+++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            35578888999988888888888887  88888888888888888888888888888888888888777 6777777777


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHH
Q 016683          131 AGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAG  164 (384)
Q Consensus       131 ~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~  164 (384)
                      +..|+.+++++|+++|++++..+..+ ||||+|+.
T Consensus       118 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  152 (183)
T 3deo_A          118 AGYVRPEVVEALVELGADIEVEDERGLTALELARE  152 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred             HhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence            77777666666666666555444333 55555543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=2.5e-24  Score=178.63  Aligned_cols=139  Identities=28%  Similarity=0.321  Sum_probs=126.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-C-CCCHhHHHHH
Q 016683           87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-D-AGTPLIWAAG  164 (384)
Q Consensus        87 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~-~~~~l~~A~~  164 (384)
                      +..|.||||.|+..|+.+++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++..+ . +.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4578999999999999999999999 99999999999999999999999999999999999998766 4 4499999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCchHHHHHHhhCCHHHHHHHHHC
Q 016683          165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKA  242 (384)
Q Consensus       165 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  242 (384)
                      .|+.+++++|+++|++++.+|..|.||||+|+..++.                ..+.++|++|+..|+.+++++|.++
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~----------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            9999999999999999999999999999999875432                3368999999999999999999864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=5.2e-24  Score=185.07  Aligned_cols=144  Identities=28%  Similarity=0.308  Sum_probs=128.5

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHH
Q 016683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHHSA  131 (384)
Q Consensus        53 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~  131 (384)
                      +..|.||||+|+..|+.+++++|++  +.+++.+|..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4578999999999999999999998  88999999999999999999999999999999999999888 78999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 016683          132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (384)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  210 (384)
                      ..|+.+++++|+++|++++..+..+ ||||+|+..++                 ...+.|||++|+..|+.+++++|++.
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            9999999999999999998877665 99999985222                 24578999999999999999999987


Q ss_pred             CCCcc
Q 016683          211 GANAN  215 (384)
Q Consensus       211 g~~~~  215 (384)
                      +.+..
T Consensus       183 ~~~~~  187 (244)
T 3ui2_A          183 VFEYA  187 (244)
T ss_dssp             HEEEE
T ss_pred             ccccc
Confidence            65543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=2.4e-24  Score=184.51  Aligned_cols=139  Identities=24%  Similarity=0.308  Sum_probs=104.8

Q ss_pred             hhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHH
Q 016683           49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH-GANPTIPSNLGATAL  127 (384)
Q Consensus        49 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L  127 (384)
                      .+..+..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.++|++|+++ |++++..|..|.|||
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL  144 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL  144 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred             ccccccccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence            345567788999999999999999999986 888998899999999999999999999999988 899999998899999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 016683          128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDN  188 (384)
Q Consensus       128 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g  188 (384)
                      |+|+..|+.+++++|+++|++++..+..+ |||++|+..++.++++.|++.++.....+..+
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            98888888888888888888877766554 88888888788888888877777665554443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=8.7e-24  Score=189.09  Aligned_cols=144  Identities=19%  Similarity=0.197  Sum_probs=120.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhc-ccCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCcCCCCCC
Q 016683           15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI-KDANKRGALHFAARE---GKTDVCKYLLEELKLDVDTQDEDG   90 (384)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~-~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g   90 (384)
                      .++|+.|+..|+++.+++|++.    |.++...+... .+..|.||||+|+..   |+.+++++|++. |++++.+|..|
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~----g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G  226 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFAN----GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADG  226 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT----TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTC
T ss_pred             HHHHhhhhhccCHHHHHHHHhc----CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCC
Confidence            4679999999999999999976    44432211111 578999999999997   899999999998 99999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCH
Q 016683           91 ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQ  168 (384)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~  168 (384)
                      +||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|++     .+.||||+|+..|+.
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-----TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----TTSSCCC--------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----CCCChhHHHHhcCCc
Confidence            9999999999999999999999999999999999999999999999999999998875     345888888877753

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=1.2e-23  Score=162.75  Aligned_cols=110  Identities=26%  Similarity=0.332  Sum_probs=90.2

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 016683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (384)
Q Consensus        53 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  132 (384)
                      +..|.||||.|+..|+.+++++|++. |.+++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            45678899999999999999998887 88888888889999999999999999999999998888888888888888888


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHH
Q 016683          133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAA  163 (384)
Q Consensus       133 ~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~  163 (384)
                      .|+.+++++|+++|++++..+..+ ||+++|.
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            888888888888877776665544 7777763

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=1.3e-23  Score=162.40  Aligned_cols=112  Identities=28%  Similarity=0.403  Sum_probs=101.7

Q ss_pred             CCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHH
Q 016683          156 GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE  234 (384)
Q Consensus       156 ~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~  234 (384)
                      .||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|+||||+|+..|+.+
T Consensus         8 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~   87 (123)
T 3aaa_C            8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   87 (123)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHH
Confidence            38899999999999999999999999999999999999999999999999999999999877 78999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 016683          235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE  267 (384)
Q Consensus       235 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  267 (384)
                      ++++|+++|++++.+|..|.||+|+|...+..+
T Consensus        88 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           88 CVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence            999999999999999999999999995433333

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=1.6e-23  Score=187.34  Aligned_cols=143  Identities=23%  Similarity=0.247  Sum_probs=117.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCC
Q 016683           86 QDEDGETPLLHAARQGHTETAKYLFEHGANPTI------PSNLGATALHHSAGI---GNIELLTYLLSKGAEVDSESDAG  156 (384)
Q Consensus        86 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~  156 (384)
                      ......++|+.|+..|+.+.|+.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++..+..+
T Consensus       147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G  226 (301)
T 2b0o_E          147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG  226 (301)
T ss_dssp             CCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTC
T ss_pred             ccCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCC
Confidence            344556789999999999999999999998887      588899999999987   88999999999999888776555


Q ss_pred             -CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCchHHHHHHhhCCH
Q 016683          157 -TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGST  233 (384)
Q Consensus       157 -~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~  233 (384)
                       ||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++|++     .|.||||+|+.+|+.
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-----TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----TTSSCCC--------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----CCCChhHHHHhcCCc
Confidence             999999999999999999999999999999999999999999999999999998876     378999999988864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=1.5e-22  Score=178.97  Aligned_cols=196  Identities=20%  Similarity=0.193  Sum_probs=147.2

Q ss_pred             CCCCcC-----CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 016683           80 KLDVDT-----QDEDGETPLLHAARQGHTETAKYLFEHGANPTI-PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES  153 (384)
Q Consensus        80 ~~~~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  153 (384)
                      |..+..     .|..+.+.++.+...|+..+.+++...-..... ....+....+    ....-..+++...........
T Consensus        51 g~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~  126 (278)
T 1dcq_A           51 GVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHAD  126 (278)
T ss_dssp             CTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSS
T ss_pred             CCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccc
Confidence            665554     567788899999999998877776543222211 1111111111    111111223222211111111


Q ss_pred             -CC-CCHhHHHHHcCCHHHHHHHHhCCCCC------CCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCcccc-CCCc
Q 016683          154 -DA-GTPLIWAAGHGQQEAVKVLLEHHANP------NAETEDNITPLLSAVAA---GSLTCLDLLIQAGANANIV-AGGA  221 (384)
Q Consensus       154 -~~-~~~l~~A~~~~~~~~~~~Ll~~~~~~------~~~~~~g~t~l~~A~~~---~~~~~v~~Ll~~g~~~~~~-~~g~  221 (384)
                       .. .++|+.|+..|+.+.++.+++.|+++      +..+..|.||||+|+..   |+.+++++|+++|++++.. ..|+
T Consensus       127 ~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~  206 (278)
T 1dcq_A          127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS  206 (278)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCC
T ss_pred             cchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCC
Confidence             11 17899999999999999999999984      44578899999999999   8999999999999999987 7899


Q ss_pred             hHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 016683          222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED  279 (384)
Q Consensus       222 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  279 (384)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.++..
T Consensus       207 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999999999999999877643

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=2.6e-22  Score=146.94  Aligned_cols=93  Identities=45%  Similarity=0.659  Sum_probs=87.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 016683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG  134 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  134 (384)
                      +|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            489999999999999999999997 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCC
Q 016683          135 NIELLTYLLSKGAE  148 (384)
Q Consensus       135 ~~~~~~~Ll~~~~~  148 (384)
                      +.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=4e-22  Score=176.29  Aligned_cols=134  Identities=19%  Similarity=0.214  Sum_probs=121.5

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchh-hhcccCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCcCC
Q 016683           11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTV-ADIKDANKRGALHFAARE---GKTDVCKYLLEELKLDVDTQ   86 (384)
Q Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~   86 (384)
                      ......+|+.|+..||++.+++++..    |.++...+ .+..+..|.||||+|+..   |+.+++++|++. |+++|.+
T Consensus       127 ~~~~l~~l~~a~~~~d~~~~~~ll~~----g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~  201 (278)
T 1dcq_A          127 TAAKLHSLCEAVKTRDIFGLLQAYAD----GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQ  201 (278)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHT----TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCC
T ss_pred             cchhhhhhhhHhhhcccHHHHHHHHh----hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCcccc
Confidence            34567899999999999999999987    54444333 566688999999999999   899999999998 9999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 016683           87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV  149 (384)
Q Consensus        87 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  149 (384)
                      |..|+||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|+..
T Consensus       202 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          202 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999999999999999999999999998753

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=5.2e-23  Score=176.13  Aligned_cols=131  Identities=18%  Similarity=0.232  Sum_probs=59.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCH
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQ  168 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~  168 (384)
                      .|.||||+|+..|+.++|++|++.|++++..|..|.||||+|+..|+.+++++|++.                       
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------------------  128 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ-----------------------  128 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTS-----------------------
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcC-----------------------
Confidence            445555555555555555555555555555555555555555444444444444433                       


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCC
Q 016683          169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN  247 (384)
Q Consensus       169 ~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  247 (384)
                              .|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.++++.|++.|++.+
T Consensus       129 --------~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          129 --------PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             --------TTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             --------CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence                    04444444444545555444444444444444444444443 344555555555555555555555554444


Q ss_pred             CCC
Q 016683          248 VTD  250 (384)
Q Consensus       248 ~~~  250 (384)
                      ..+
T Consensus       201 ~~~  203 (222)
T 3ehr_A          201 LSN  203 (222)
T ss_dssp             ---
T ss_pred             ccc
Confidence            433

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=7.8e-22  Score=180.44  Aligned_cols=158  Identities=23%  Similarity=0.245  Sum_probs=67.9

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHHCCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHH
Q 016683           89 DGETPLLHAARQ-GHTETAKYLFEHGANPTIPS--NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAG  164 (384)
Q Consensus        89 ~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~  164 (384)
                      .+.|+||.|+.. |+.+++++|+++|++++..+  ..|.||||+|+..|+.+++++|+++|++++..+..+ ||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            344555555555 55555555555555555544  445555555555555555555555555555444333 55555555


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc---c-CCCchHHHHHHhhCC--HHHHHH
Q 016683          165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI---V-AGGATPLHIAADIGS--TEIIKC  238 (384)
Q Consensus       165 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~---~-~~g~t~L~~A~~~~~--~~~v~~  238 (384)
                      .|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+..+.....   . ..+.|+++++.....  .+-.+.
T Consensus       278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~~~~~~ek  357 (368)
T 3jue_A          278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEK  357 (368)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------------------
T ss_pred             cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhhcCCCHHH
Confidence            5555555555555555555566666666666666666666666655422211   1 335566655544432  233344


Q ss_pred             HHHCCCCC
Q 016683          239 LLKAGADP  246 (384)
Q Consensus       239 Ll~~ga~~  246 (384)
                      |...+.++
T Consensus       358 l~r~~~~~  365 (368)
T 3jue_A          358 LSRRSHDL  365 (368)
T ss_dssp             --------
T ss_pred             HHhcCCCc
Confidence            44444443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=1.9e-21  Score=177.85  Aligned_cols=147  Identities=24%  Similarity=0.280  Sum_probs=107.4

Q ss_pred             CCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCCCC---CCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 016683          119 PSNLGATALHHSAGI-GNIELLTYLLSKGAEVDSES---DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLS  194 (384)
Q Consensus       119 ~~~~g~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~---~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  194 (384)
                      .+..+.|+||.|+.. |+.++++.|++.|++++..+   .+.||||+|+..|+.+++++|+++|++++..|..|.||||+
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~  274 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH  274 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            344567899999988 99999999999998888765   34499999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCC---CCCCCCCCCCCcHHHHHHHcCC
Q 016683          195 AVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAG---ADPNVTDEDGQKPIQVAAARGN  265 (384)
Q Consensus       195 A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~  265 (384)
                      |+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|++.+   ++....+..+.|+++++.....
T Consensus       275 A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             HHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHh
Confidence            99999999999999999998877 77899999999999999999998765   3444566678888888776653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=3.5e-21  Score=140.85  Aligned_cols=90  Identities=42%  Similarity=0.666  Sum_probs=70.9

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q 016683          188 NITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNR  266 (384)
Q Consensus       188 g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  266 (384)
                      |.||||+|+..|+.+++++|++.|++++.. ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            677888888888888888888888777766 6678888888888888888888888888888888888888888888888


Q ss_pred             HHHHhhcCCCC
Q 016683          267 EAVEILFPLTS  277 (384)
Q Consensus       267 ~~v~~Ll~~~~  277 (384)
                      +++++|++.+.
T Consensus        82 ~~~~~Ll~~ga   92 (93)
T 1n0q_A           82 EVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHcCC
Confidence            88888876653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=2.4e-21  Score=147.73  Aligned_cols=104  Identities=35%  Similarity=0.481  Sum_probs=82.8

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 016683           51 IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS  130 (384)
Q Consensus        51 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  130 (384)
                      .+|.+|.||||+|+..|+.+++++|++. |++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            4577788888888888888888888876 888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCCC
Q 016683          131 AGIGNIELLTYLLSKGAEVDSESDA  155 (384)
Q Consensus       131 ~~~~~~~~~~~Ll~~~~~~~~~~~~  155 (384)
                      +..|+.+++++|+++|++++..+..
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~  107 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWG  107 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCC
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCcc
Confidence            8877777777777777776654443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=1.4e-20  Score=143.35  Aligned_cols=107  Identities=38%  Similarity=0.516  Sum_probs=85.8

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHH
Q 016683           85 TQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAA  163 (384)
Q Consensus        85 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~  163 (384)
                      .+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..+ |||++|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            467888999999999999999999999998888888888888888888888888888888888777665544 7777777


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCCH
Q 016683          164 GHGQQEAVKVLLEHHANPNAETEDNITP  191 (384)
Q Consensus       164 ~~~~~~~~~~Ll~~~~~~~~~~~~g~t~  191 (384)
                      ..++.+++++|+++|++++..+..|.+|
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            7777777777777777777777777665

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=4e-19  Score=134.14  Aligned_cols=96  Identities=34%  Similarity=0.437  Sum_probs=85.5

Q ss_pred             chhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Q 016683           46 KTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGAT  125 (384)
Q Consensus        46 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  125 (384)
                      +......|.+|.|+||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.|
T Consensus        14 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t   92 (110)
T 2zgd_A           14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT   92 (110)
T ss_dssp             --------CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCcccccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCc
Confidence            344456688999999999999999999999987 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHH
Q 016683          126 ALHHSAGIGNIELLTYL  142 (384)
Q Consensus       126 ~L~~A~~~~~~~~~~~L  142 (384)
                      |||+|+..|+.+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999986

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=1.5e-18  Score=130.91  Aligned_cols=91  Identities=35%  Similarity=0.501  Sum_probs=81.9

Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 016683          182 NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA  260 (384)
Q Consensus       182 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  260 (384)
                      ...+.+|.|+||+|+..|+.+++++|++.|++++.. ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            345677889999999999999999999999998877 7799999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHhh
Q 016683          261 AARGNREAVEIL  272 (384)
Q Consensus       261 ~~~~~~~~v~~L  272 (384)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            999999999987

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=83.28  E-value=2.4  Score=31.08  Aligned_cols=35  Identities=31%  Similarity=0.425  Sum_probs=30.2

Q ss_pred             HHHHHHHchhhHHhhhhHHHHHHHHHHHHHhccCC
Q 016683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVLC  367 (384)
Q Consensus       333 ~~~~~k~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  367 (384)
                      ..+..+.+|+..+++++|.+|+..|++++..+...
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~   46 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN   46 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            45567889999999999999999999999998543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-43
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-41
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-37
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-37
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-35
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-24
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-34
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-28
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-30
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-28
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-20
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-29
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-27
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-25
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-25
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-25
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-16
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-15
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-23
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-18
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-23
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-19
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-19
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-14
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-13
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-12
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-12
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-11
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	7e-10
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	7e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	9e-09
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (388), Expect = 1e-43
 Identities = 77/268 (28%), Positives = 107/268 (39%), Gaps = 36/268 (13%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
                     LH AA+ GK  V + LLE      +   ++G TPL  A    + +  K L
Sbjct: 126 ACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168
              G +P  P+  G T LH +A    +E+   LL  G   ++ES  G TPL  AA  G  
Sbjct: 185 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 244

Query: 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG--------- 219
           E V +LL   AN N   +  +TPL      G +   D+LI+ G   +             
Sbjct: 245 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 304

Query: 220 -------------------------GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ 254
                                    G +PLH AA  G T+I+  LLK GA PN    DG 
Sbjct: 305 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT 364

Query: 255 KPIQVAAARGNREAVEILFPLTSEDPSI 282
            P+ +A   G     ++L  +T E   +
Sbjct: 365 TPLAIAKRLGYISVTDVLKVVTDETSFV 392

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (369), Expect = 9e-41
 Identities = 72/216 (33%), Positives = 102/216 (47%), Gaps = 3/216 (1%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            LH A+  G   + K LL+      +  +   ETPL  AAR GHTE AKYL ++ A    
Sbjct: 3   PLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEV-DSESDAGTPLIWAAGHGQQEAVKVLLEH 177
            +    T LH +A IG+  ++  LL   A    + +   TPL  AA  G  E V  LLE 
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEII 236
            A+    T+   TPL  A   G +   +LL++  A+ N     G TPLH+A    + +I+
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           K LL  G  P+    +G  P+ +AA +   E    L
Sbjct: 182 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (346), Expect = 1e-37
 Identities = 66/185 (35%), Positives = 98/185 (52%), Gaps = 2/185 (1%)

Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
           TPL  A+  GH    K L + GA+P + +    T LH +A  G+ E+  YLL   A+V++
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 152 ESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210
           ++    TPL  AA  G    VK+LLE++ANPN  T    TPL  A   G +  +  L++ 
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 211 GANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
            A+   +   G TPLH+AA  G   + + LL+  A PN   ++G  P+ VA    N + V
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 270 EILFP 274
           ++L P
Sbjct: 182 KLLLP 186

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (343), Expect = 5e-37
 Identities = 99/358 (27%), Positives = 158/358 (44%), Gaps = 16/358 (4%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A+  G+L ++K + ++             ++ +      LH AAR G T+V KYLL+  K
Sbjct: 7   ASFMGHLPIVKNLLQRGAS---------PNVSNVKVETPLHMAARAGHTEVAKYLLQN-K 56

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
             V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E + 
Sbjct: 57  AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 116

Query: 141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            LL K A     +  G TPL  AA +G+    ++LLE  A+PNA  ++ +TPL  AV   
Sbjct: 117 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 176

Query: 200 SLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
           +L  + LL+  G + +  A  G TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct: 177 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 236

Query: 259 VAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKA 318
           +AA  G+ E V +L     +  +       G+           +     L ++    D A
Sbjct: 237 LAAQEGHAEMVALLLS---KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-A 292

Query: 319 PMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVLCHFDAIFLLI 376
             +                  +     +          Y+ +  ++   H D + LL+
Sbjct: 293 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 7e-19
 Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 189 ITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN 247
           +TPL  A   G L  +  L+Q GA+ N+      TPLH+AA  G TE+ K LL+  A  N
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 248 VTDEDGQKPIQVAAARGNREAVEIL 272
              +D Q P+  AA  G+   V++L
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLL 85

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  131 bits (329), Expect = 1e-35
 Identities = 37/286 (12%), Positives = 68/286 (23%), Gaps = 32/286 (11%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYL- 75
                     + + +        +   +  +D      +       AA  G +     L 
Sbjct: 51  FLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLC 110

Query: 76  -LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI--PSNLGATALHHSAG 132
            L      V     +       AA  GH      L E      +         A   +A 
Sbjct: 111 LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 170

Query: 133 IGNIELLTYLLSKGAEVDSE----SDAGTPLIWAAGHGQQEAVKVLLEHHANPN------ 182
            G++ +L  L        +      +       A G G    +  LL+            
Sbjct: 171 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE 230

Query: 183 -AETEDNITPLLSAVAAGSLTCLDLLIQAGANANI----------VAGGATPLHIAADIG 231
               E  + P ++          D    +  +                    L    D  
Sbjct: 231 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 290

Query: 232 STEIIKCLLKAGADP-----NVTDEDGQKPIQVAAARGNREAVEIL 272
             + I+ LL                D  + +++A   GN+ A  +L
Sbjct: 291 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 99.2 bits (246), Expect = 6e-24
 Identities = 37/253 (14%), Positives = 64/253 (25%), Gaps = 45/253 (17%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE-L 79
           AA TG    L      L    +     +  +  A    A   AA  G   V   L E   
Sbjct: 97  AAITGCSSALD-TLCLLLTSDE-----IVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150

Query: 80  KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP---TIPSNLGATALHHSAGIGNI 136
              +     +       AA  GH      L E         I +         + G G+ 
Sbjct: 151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 210

Query: 137 ELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLE------------HHANPNAE 184
            ++ +LL     +          I    +G++     +                +NP+  
Sbjct: 211 NVINFLLDCPVMLA------YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV 264

Query: 185 TE-----------DNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGA------TPLHIA 227
            +             +  L+       L  +  L+       +             L +A
Sbjct: 265 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 324

Query: 228 ADIGSTEIIKCLL 240
             +G+      LL
Sbjct: 325 LRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 69.5 bits (169), Expect = 9e-14
 Identities = 29/215 (13%), Positives = 50/215 (23%), Gaps = 35/215 (16%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+L +L ++ +    +          +         A   AA  G   V   L E 
Sbjct: 133 AAENGHLHVLNRLCELAPTE---------IMAMIQAENYHAFRLAAENGHLHVLNRLCEL 183

Query: 79  LKLDVD--TQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA----- 131
              +     Q E+       A  +GH     +L +                         
Sbjct: 184 APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIA 243

Query: 132 --GIGNIELLTYLLSKGAEVDSE----------SDAGTPLIWAAGHGQQEAVKVLLEHHA 179
                  E+         +   +                LI        + ++ LL    
Sbjct: 244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPG 303

Query: 180 -----NPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
                       D    L  A+  G+     LL+ 
Sbjct: 304 IKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 62.6 bits (151), Expect = 1e-11
 Identities = 24/165 (14%), Positives = 40/165 (24%), Gaps = 37/165 (22%)

Query: 42  KGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQG 101
              ++  A I+  N       A   G  +V  +LL+                 +H    G
Sbjct: 183 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD--------CPVMLAYAEIHEFEYG 234

Query: 102 HTETAKYLFEHGA-----------------------NPTIPSNLGATALHHSAGIGNIEL 138
                 ++  H                         +  +        L        ++ 
Sbjct: 235 EKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDD 294

Query: 139 LTYLLSKGAEVDSES------DAGTPLIWAAGHGQQEAVKVLLEH 177
           + +LLS               DA   L  A   G Q A  +LL  
Sbjct: 295 IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.0 bits (121), Expect = 8e-08
 Identities = 17/116 (14%), Positives = 26/116 (22%), Gaps = 26/116 (22%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG------------------ALH 61
           +    G       +   +      L +     K +N  G                   L 
Sbjct: 229 HEFEYGEKY----VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI 284

Query: 62  FAAREGKTDVCKYLLE----ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG 113
               E   D  ++LL     +      T   D    L  A R G+      L    
Sbjct: 285 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 1e-34
 Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 3/215 (1%)

Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           +   A  GK +  K  +   K      D+D  T L  A   GHTE  ++L + G      
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
            + G + LH +A  G  E++  LL KGA+V++ +  G TPL +AA   + E   +LLE  
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIK 237
           ANP+A+     T +  A A G+L  + +L+   A+ NI    G TPLH+A D    E  K
Sbjct: 127 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK 186

Query: 238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            L+  GA   + +++ + P+QV A  G    ++ +
Sbjct: 187 LLVSQGASIYIENKEEKTPLQV-AKGGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 2e-28
 Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 12/226 (5%)

Query: 18  FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLE 77
             N A +G L+ LK+    +         ++A   D + R ALH+A   G T++ ++ L 
Sbjct: 7   VCNLAYSGKLEELKES---ILADK-----SLATRTDQDSRTALHWACSAGHTEIVEF-LL 57

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
           +L + V+ +D+ G +PL  AA  G  E  K L   GA     +  G T LH++A     E
Sbjct: 58  QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE 117

Query: 138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAV 196
           +   LL  GA  D++     T +  AA  G  + + +LL + A+ N +  +  TPL  A 
Sbjct: 118 IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 177

Query: 197 AAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLK 241
               +    LL+  GA+  I      TPL +A   G   I+K +++
Sbjct: 178 DEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 3e-16
 Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 9/197 (4%)

Query: 120 SNLGATALHHSAGIGNIELLT-YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
           SNL    + + A  G +E L   +L+  +          T L WA   G  E V+ LL+ 
Sbjct: 3   SNL---MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 59

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEII 236
               N + +   +PL  A +AG    +  L+  GA  N V   G TPLH AA     EI 
Sbjct: 60  GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIA 119

Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQS 296
             LL+ GA+P+  D      +  AAA+GN   ++++  L     S      +G      +
Sbjct: 120 VMLLEGGANPDAKDHYEATAMHRAAAKGN---LKMIHILLYYKASTNIQDTEGNTPLHLA 176

Query: 297 ESGKQLEETRNLKENNA 313
              +++EE + L    A
Sbjct: 177 CDEERVEEAKLLVSQGA 193

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 5e-30
 Identities = 63/276 (22%), Positives = 110/276 (39%), Gaps = 56/276 (20%)

Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD-EDGETPLLHAARQGHTETAK 107
           A ++D +    L  A +    D+ + LLE    +V+ Q+ E G TPL +A +    +  +
Sbjct: 1   AAVEDNH---LLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVE 56

Query: 108 YL---------------------------------FEHGANPTIPSNLGATALHHSAGIG 134
            L                                    GA+       G TA   +A  G
Sbjct: 57  LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116

Query: 135 NIELLTYLLSKGAEVDS-----------ESDAGTPLIWAAGHGQQEAVKVLLEHH-ANPN 182
            ++ L +L  +GA V+                 T L+ AA  G  E +K+LL+   A+ N
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 183 AETEDNITPLLSAVAAGSLTCLD----LLIQAGANANIVAG-GATPLHIAADIGSTEIIK 237
           A        L+ A+ +   + ++    LL+  GA+ N+    G TPL +A +     +++
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236

Query: 238 CLL-KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            LL +   + N TD DG+  + +A     ++  E+L
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 4e-28
 Identities = 68/294 (23%), Positives = 111/294 (37%), Gaps = 64/294 (21%)

Query: 10  AVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI---KDANKRGALHFAARE 66
           A  E     + A    ++D    + +QL + G       A++   ++      LH A + 
Sbjct: 1   AAVEDNHLLIKAVQNEDVD----LVQQLLEGG-------ANVNFQEEEGGWTPLHNAVQM 49

Query: 67  GKTDVCKYLLE--------------------------------ELKLDVDTQDEDGETPL 94
            + D+ + LL                                     DV+  D  G T  
Sbjct: 50  SREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF 109

Query: 95  LHAARQGHTETAKYLFEHGAN----------PTIPSNLGATALHHSAGIGNIELLTYLLS 144
           + AA  G  +  K+L++ GAN                 GATAL  +A  G++E+L  LL 
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169

Query: 145 K-GAEVDSESDAGTPLIWAAGHGQQ-----EAVKVLLEHHANPNAETEDNITPLLSAVAA 198
           + GA+V++  + G   +  A              +LL+H A+ N   E   TPL+ AV  
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229

Query: 199 GSLTCLDLLI-QAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD 250
             L  +  L+ Q     N   + G T L +A ++   +I + L K GA  +  D
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (217), Expect = 2e-20
 Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 14/199 (7%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSN-LGATALHHSAGIGNIELLTYLLSKGA 147
           +    L+ A +    +  + L E GAN        G T LH++  +   +++  LL  GA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 148 EVDSESDAGTPLIW-AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL 206
           +       G      AA  G  + +K+ L   A+ N       T  + A   G +  L  
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 207 LIQAGANANIV-----------AGGATPLHIAADIGSTEIIKCLL-KAGADPNVTDEDGQ 254
           L + GAN N+             GGAT L  AA+ G  E++K LL + GAD N  D  G+
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 255 KPIQVAAARGNREAVEILF 273
             +  A    +   VE + 
Sbjct: 184 NALIHALLSSDDSDVEAIT 202

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  112 bits (280), Expect = 3e-29
 Identities = 57/278 (20%), Positives = 102/278 (36%), Gaps = 34/278 (12%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE 78
           L+    G+  + + I            ++V  I   + R  LH+ A     +  + L+  
Sbjct: 6   LHTEAAGSYAITEPI----------TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVH 55

Query: 79  LKL-------DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA 131
                     DV+  D D  TPL+ A          YL + GA+PTI +    +ALH +A
Sbjct: 56  EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAA 115

Query: 132 GIGNIELLTYLLSKGAEVDSE---------------SDAGTPLIWAAGHGQQEAVKVLLE 176
              +  ++ Y+L+                        + G   + +A    ++  KV  +
Sbjct: 116 ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 175

Query: 177 HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG--GATPLHIAADIGSTE 234
             A  ++E     T L  A    ++  +  L+    +        G TP+ +AA  G  E
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           ++  L++ GA     D       Q+A A  +   V+I 
Sbjct: 236 VVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.9 bits (172), Expect = 2e-14
 Identities = 29/94 (30%), Positives = 46/94 (48%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D +    R ALH+AA+     + KYL+ E   + D QDEDG+TP++ AA++G  E   YL
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
            + GA+         TA   +    +  ++    
Sbjct: 241 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 48/241 (19%), Positives = 81/241 (33%), Gaps = 60/241 (24%)

Query: 91  ETPL-LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL------ 143
           E+P+ LH    G     + +     N  I      T LH  A   + E    L+      
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 144 --SKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS 200
             + GA+V++      TPL+ A    ++  V  L++  A+P    +   + L  A A   
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRD 119

Query: 201 LTCLDLLIQAGANANIVAG----------------------------------------- 219
              +  ++ +      +                                           
Sbjct: 120 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 179

Query: 220 -------GATPLHIAADIGSTEIIK-CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                  G T LH AA + +  I+K  + + G++ +  DEDG+ PI +AA  G  E V  
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 272 L 272
           L
Sbjct: 240 L 240

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.3 bits (147), Expect = 3e-11
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 112 HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQE 169
             A        G TALH++A + N+ ++ YL+ +      + D    TP++ AA  G+ E
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210
            V  L++  A+  A    + T    A A      +D+  + 
Sbjct: 236 VVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 5e-27
 Identities = 59/240 (24%), Positives = 89/240 (37%), Gaps = 19/240 (7%)

Query: 52  KDANKRGALHFAAREGKTDVCKYLLEE--LKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
              +   ALH A          +LL        +D Q++ G+T L  AA  G   T + L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA---------------EVDSESD 154
           +  GA   +    G TALH +  +        LL                   +   ++ 
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 155 AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA 214
                + +  + + E      +      AE  D  TPL  AV       + LL  AGA+ 
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184

Query: 215 NIVAGGA--TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           N        TPLH+A +  +  +++ LLKAGADP      G+ P+  A  R N     +L
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (149), Expect = 1e-11
 Identities = 25/156 (16%), Positives = 41/156 (26%), Gaps = 34/156 (21%)

Query: 29  LLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDE 88
           LL+       D          D             ++    +  +   E+ +L ++ ++ 
Sbjct: 97  LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156

Query: 89  DG----------------------------------ETPLLHAARQGHTETAKYLFEHGA 114
           DG                                   TPL  A         + L + GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD 150
           +PT     G T L  +    N  L   L + GA   
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 1e-09
 Identities = 42/210 (20%), Positives = 66/210 (31%), Gaps = 21/210 (10%)

Query: 185 TEDNITPLLSAVAAGSLTCLDLLIQAGANANIV----AGGATPLHIAADIGSTEIIKCLL 240
           TED  T L  AV       LD L+   A    +      G T LH+AA +G    ++ L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQ----- 295
            AGA   V +  G   + +A          +L       PS P+   D  L   Q     
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLL---QPRPSHPRDASDTYLTQSQDCTPD 122

Query: 296 ---------SESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFK 346
                    S+   + EE    ++     +         +   +  K AE      +A  
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 347 QKDYLMAVDAYTQVCYSSVLCHFDAIFLLI 376
             +        T +  +        + LL+
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLL 212

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (254), Expect = 2e-25
 Identities = 52/273 (19%), Positives = 95/273 (34%), Gaps = 31/273 (11%)

Query: 12  RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDV 71
           + +++ FL       +   +++   L++     +          +  +     +E     
Sbjct: 36  KMKLEAFLQRLLFPEI---QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQE----- 87

Query: 72  CKYLLEELKLDVDTQ-DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130
                   +L+++   DE G TPL       + E  K+L +HG+N     N+G + L  +
Sbjct: 88  VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 147

Query: 131 AGIGNI-------ELLTYLLSKGAEVDS----------ESDAGTPLIWAAGHGQQEAVKV 173
               N         LL YL       DS           +   T    AA +     +  
Sbjct: 148 VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW 207

Query: 174 LLEHHANPNAETEDNITPLLSAVAAGSLTC----LDLLIQAGANANIV-AGGATPLHIAA 228
           +++    P     +      +             LDL        N   + G T L+IAA
Sbjct: 208 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 267

Query: 229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
            +G+  I+  LL  GADP + ++ G +P+   A
Sbjct: 268 RLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.1 bits (183), Expect = 8e-16
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 2/116 (1%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLL-- 76
           + +  TG     K     L                  K    +    E K  + + L   
Sbjct: 186 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 245

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG 132
             +   ++ QD +G+T L  AAR G+      L ++GA+P I +  G   +   AG
Sbjct: 246 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 301

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 3/105 (2%)

Query: 171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN--IVAGGATPLHIAA 228
           +K L     N N +       L   +          L    +N N    +      H++ 
Sbjct: 22  MKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF 81

Query: 229 DIGSTEIIKCLLKAGADPNV-TDEDGQKPIQVAAARGNREAVEIL 272
           D    E+         + N+  DE G  P+    +  N E V+ L
Sbjct: 82  DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL 126

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (247), Expect = 4e-25
 Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 10/221 (4%)

Query: 59  ALHFAAREGKTDVCKYLLEELK---LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGAN 115
            LH A  +G       L+   +    ++D  +   +TPL  A         + L   GA+
Sbjct: 6   PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 65

Query: 116 PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-----DAGTPLIWAAGHGQQEA 170
           P      G TA H +    +   L  LL   A    +      D  T L  A     QE 
Sbjct: 66  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 125

Query: 171 VKVLLEHHANPNAETE-DNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAA 228
           V++LLE  A+ +A       +PL+ AV   SL+ + LL+Q GAN N     G++ LH A+
Sbjct: 126 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 185

Query: 229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
             G   +++ L+++GAD ++ +     P+ VA +R   + +
Sbjct: 186 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 5e-08
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK 107
           +   ALH A+  G   + + L+     D   ++   +TPL+ A  +   +  +
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  100 bits (250), Expect = 5e-25
 Identities = 68/261 (26%), Positives = 98/261 (37%), Gaps = 30/261 (11%)

Query: 30  LKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDED 89
           LK+      D    + K        +       A   G T+    LLE    D++  + D
Sbjct: 14  LKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVD 72

Query: 90  GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
           G T L  A    + +  K+L E+GAN   P N G   LH +A  G +++  YL+S+GA V
Sbjct: 73  GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 150 DSESDAGTPLIW----------------------------AAGHGQQEAVKVLLEHHANP 181
            + +  G   +                                   ++A + L   H N 
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192

Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLL 240
               +   T L  A A G    L LLIQA  + NI    G TPLH AA  G  E  + L+
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252

Query: 241 KAGADPNVTDEDGQKPIQVAA 261
           +   D    ++ GQ    VA 
Sbjct: 253 ENLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 77.1 bits (188), Expect = 1e-16
 Identities = 60/253 (23%), Positives = 93/253 (36%), Gaps = 33/253 (13%)

Query: 50  DIKDANKRGALHFAAREGK-TDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
            + DA ++         G  TD+   +++  K  V     D     L A   G TE    
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVK---FDDGAVFLAACSSGDTEEVLR 58

Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQ 168
           L E GA+    +  G TALH +    N++++ +L+  GA ++   + G   + AA     
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118

Query: 169 EAVKVLL---------------------------EHHANPNAETEDNITPLLSAVAAGSL 201
             +   L                           E   N       +I           L
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178

Query: 202 TCLDLLIQAGANANIVAG--GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
                 + +G   ++     G T LH+AA  G TE++K L++A  D N+ D DG  P+  
Sbjct: 179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHA 238

Query: 260 AAARGNREAVEIL 272
           AA  G  EA  IL
Sbjct: 239 AAHWGKEEACRIL 251

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 74.0 bits (180), Expect = 2e-15
 Identities = 59/262 (22%), Positives = 102/262 (38%), Gaps = 47/262 (17%)

Query: 18  FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYL 75
           FL A  +G+ +       +L ++G       ADI   + +   ALH A  +   D+ K+L
Sbjct: 44  FLAACSSGDTE----EVLRLLERG-------ADINYANVDGLTALHQACIDDNVDMVKFL 92

Query: 76  LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
           +E    +++  D +G  PL  AA  G+ + A+YL   GA+    ++ G T L  +     
Sbjct: 93  VENGA-NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM 151

Query: 136 IE---------------------------LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167
            E                              +L S        + +G T L  AA  G 
Sbjct: 152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211

Query: 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHI 226
            E +K+L++   + N +  D  TPL +A   G      +L++   +   V   G T   +
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271

Query: 227 AADIGSTEIIKCLLKAGADPNV 248
           A +    +I+  L +     N+
Sbjct: 272 ADE----DILGYLEELQKKQNL 289

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 94.9 bits (234), Expect = 2e-23
 Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 5/206 (2%)

Query: 71  VCKYLLEELKLDVD-TQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS--NLGATAL 127
           V   LL +   +++ T D+ GET L  AAR    + AK L + GA+              
Sbjct: 4   VISDLLAQ-GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 128 HHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETED 187
             +A    +  +              D  TPLI AA    +  V+ L+   A+ NA    
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 188 NITPLLSAVAAGSLTCLDLLIQAGANANIVAGGA-TPLHIAADIGSTEIIKCLLKAGADP 246
             T L  A A  +   +++L+   AN +       TPL +AA  GS E  K LL   A+ 
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 247 NVTDEDGQKPIQVAAARGNREAVEIL 272
            +TD   + P  VA+ R + + V +L
Sbjct: 183 EITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 79.8 bits (195), Expect = 5e-18
 Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 12/214 (5%)

Query: 31  KKIAKQLDDQGKGLSKTVADI---KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD 87
            ++   L  QG       A++    D     +LH AAR  + D  K LL+         +
Sbjct: 2   AQVISDLLAQG-------AELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDN 54

Query: 88  EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
                     A          L     N     + G T L  +A +    ++  L++  A
Sbjct: 55  TGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA 114

Query: 148 EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL 206
           ++++  ++G T L WAA     EAV +LL HHAN +A+ + + TPL  A   GS      
Sbjct: 115 DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA 174

Query: 207 LIQAGANANIV-AGGATPLHIAADIGSTEIIKCL 239
           L+   AN  I       P  +A++    +I++ L
Sbjct: 175 LLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 232 STEIIKCLLKAGADPNVT-DEDGQKPIQVAAARGNREAVEILF 273
           + ++I  LL  GA+ N T D+ G+  + +AA     +A + L 
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLL 43

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.9 bits (234), Expect = 3e-23
 Identities = 51/223 (22%), Positives = 79/223 (35%), Gaps = 12/223 (5%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG----- 113
            LH A  E +    + LL      +  +D+DG  PL  +      E   +L         
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 114 -ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVK 172
              P                +  ++ L     K       +   T L  A G    E  +
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 173 VLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA--GGATPLHIAADI 230
            L+E+ A+   + + N  PL  A + GSL  ++LL   G +A       G TPL  A   
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 231 GSTEIIKCLL-KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           G  +    L+ K GA+ ++ D  G K   VA    N +  +  
Sbjct: 183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 2e-10
 Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 19/233 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A        ++++   L  +      ++   KD + R  LH++      ++  +LL +++
Sbjct: 7   ACMENEFFKVQEL---LHSKP-----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 58

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG----ATALHHSAGIGNI 136
                   D                      +        N       T LH + G    
Sbjct: 59  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 118

Query: 137 ELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH-HANPNAETEDNITPLLS 194
           E+  +L+  GA V  +      PL  AA  G  + +++L     +  N + +   TPL  
Sbjct: 119 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 178

Query: 195 AVAAGSLTCLDLLI-QAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGAD 245
           A+A G      LL+ + GA  ++V   GA    +A +    ++ K  L    D
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 4e-08
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 222 TPLHIAADIGSTEIIKCLLKA-GADPNVTDEDGQKPIQVAAARGN 265
            PLH A        ++ LL +  +     D+DG+ P+  + +   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 6e-07
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG 211
            PL  A    +   V+ LL    +    + +D   PL  +V+  +      L+   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 7e-19
 Identities = 50/204 (24%), Positives = 76/204 (37%), Gaps = 13/204 (6%)

Query: 89  DGETPLLHAARQGHTETA----KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLS 144
           DG++ L  A             + +    A     +NL  T LH +      E+   LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 145 KGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA-------NPNAETEDNITPLLSAVA 197
            G + +     G   +  A      A   +L              A   +  T L  A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 198 AGSLTCLDLLIQAGAN--ANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQK 255
            G L  ++LL+  GA+  A     G T LH+A D+ + +++  LLK GAD N     G  
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 256 PIQVAAARGNREAVEILFPLTSED 279
           P Q+   R +    + L  LT E+
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLEN 204

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 8e-19
 Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 17/213 (7%)

Query: 59  ALHFAAREGKTDVCKYLLEELKL---DVDTQDEDGETPLLHAARQGHTETAKYLFEHGAN 115
            LH A    +  +   ++ ++K     ++ Q+   +TPL  A      E A+ L   G +
Sbjct: 5   FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 64

Query: 116 PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-------DAGTPLIWAAGHGQQ 168
           P +    G T LH +   G +  +  L          S       +  T L  A+ HG  
Sbjct: 65  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 124

Query: 169 EAVKVLLEHHANPNAETEDN-ITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHI 226
             V++L+   A+ NA+   N  T L  AV   +   + LL++ GA+ N V   G +P  +
Sbjct: 125 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 184

Query: 227 AADIGSTEIIKCLLKAGAD-----PNVTDEDGQ 254
                ST I + L +   +     P   DE+  
Sbjct: 185 TWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 217

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 4e-09
 Identities = 17/94 (18%), Positives = 32/94 (34%)

Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
           N    LH A+  G   + + L+         +  +G T L  A    + +    L + GA
Sbjct: 110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 169

Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           +    +  G +    + G  +  +   L     E
Sbjct: 170 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
           N R ALH A      D+   LL+    DV+     G +P      +  T   + L +   
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 202

Query: 115 NP 116
             
Sbjct: 203 EN 204

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLL----EELKLDVDTQDEDG 90
           +                  T + + L     E L++  +++DE+ 
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 216

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.8 bits (161), Expect = 6e-14
 Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 1/152 (0%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           D    LL AAR G  +  + L  +GA  T      +     +           L +  + 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 149 VDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI 208
                   TPL  AA  G    V+VLL+H A+ NA+    +T L  A        ++LLI
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 209 QAGANANIV-AGGATPLHIAADIGSTEIIKCL 239
           + GA+ +       T   I+ D G+ ++ + L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.9 bits (156), Expect = 3e-13
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAE 184
             L  +A  G  + +  L++ GA   ++    +PL  AA +G     +VLL    + +A 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 185 TEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAG 243
           T+ + TPL  A + G    +++L++ GA+ N       T LH A +    E+++ L+K G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           AD +   +  +    ++   GN +  EIL
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.1 bits (128), Expect = 1e-09
 Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 53  DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH 112
           D  K+  L  AAR G+ D  + L+        T    G +PL  AA+ GH  T + L   
Sbjct: 1   DLGKK--LLEAARAGQDDEVRILMAN-GAPFTTDW-LGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 113 GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTP-LIWAAGHGQQEAV 171
           G +    + +  T LH +A  G+  ++  LL  GA+V+++       L WA  H  QE V
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 172 KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207
           ++L+++ A+ + +++   T    ++  G+    ++L
Sbjct: 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 3e-12
 Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 1/151 (0%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            L  AA  G     + LL    +  D  +  G+T  L     G T  A  L + GA+P +
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQVMMFGSTAIALELLKQGASPNV 63

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHH 178
               G + +H +A  G ++ L  L+  GA+V+     G   I  A      AV   L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
           ++ +      +TPL  A+  G+   +D+L  
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 1e-09
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 1/151 (0%)

Query: 123 GATALHHSAGIGNIELLTYLL-SKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANP 181
               L  +A  G+++ +  LL  +    D+ +  G   +     G       LL+  A+P
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLK 241
           N +     +P+  A   G L  L +L++ GA+ N+  G        A       +   L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 242 AGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           A +D +  D  G  P+++A  RG ++ V+IL
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-07
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           ++ D      +H A +EG T V  +L    + D+  +D  G TPL  A ++G  +    L
Sbjct: 95  NVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 110 FEH 112
             H
Sbjct: 153 QGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 7/30 (23%), Positives = 11/30 (36%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEEL 79
             +DA     L  A + G  D+   L   +
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQGHM 156

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.1 bits (147), Expect = 5e-12
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 53  DANKRGALHFAAREGKTDVCKYLLEE-----LKLDVDTQDEDGETPLLHAAR---QGHTE 104
            A K  +L  A +            +      K+ +    E  ET L  A R   +    
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 105 TAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAA 163
              +L ++  N    +  G+TALH+     N E L  LL   A ++  +++G TPL  A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 164 GHGQQEAVKVLLEHHANP 181
               +   ++L +  +  
Sbjct: 123 RLKHEHCEELLTQALSGR 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.9 bits (136), Expect = 2e-10
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSE-------SDAGTPLIWAA---GHGQQEAVKVL 174
            +L  +    +I  L    + G ++  +           T L  A           V  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 175 LEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGST 233
           +++  N + +T    T L       +  CL LL++  A+  I    G TPL IA  +   
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 234 EIIKCLLKAGADP 246
              + L +A +  
Sbjct: 128 HCEELLTQALSGR 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 21/133 (15%), Positives = 37/133 (27%), Gaps = 43/133 (32%)

Query: 183 AETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-------GATPLHIAA---DIGS 232
           A+T   +  L  AV    +  L      G +               T LH+A    D  S
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 233 TEIIKCLLKAGADP---------------------------------NVTDEDGQKPIQV 259
             I+  L++   +                                   + +E G+ P+ +
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 260 AAARGNREAVEIL 272
           A    +    E+L
Sbjct: 121 AKRLKHEHCEELL 133

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 22/141 (15%), Positives = 38/141 (26%), Gaps = 38/141 (26%)

Query: 12  RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAR---EGK 68
             ++     A  T ++  L +      D  +   K            ALH A R      
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTE---KIPLANGHEPDETALHLAVRSVDRTS 60

Query: 69  TDVCKYLLE--------------------------------ELKLDVDTQDEDGETPLLH 96
             +  +L++                                  K  ++  +E GETPL  
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 97  AARQGHTETAKYLFEHGANPT 117
           A R  H    + L +  +   
Sbjct: 121 AKRLKHEHCEELLTQALSGRF 141

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 2e-11
 Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 2/154 (1%)

Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
             L  AA +G  E    L ++  N    +  G TAL              LL        
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 152 ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG 211
           +      +  AA  G  + ++ LLE  A+ N E  +   PL  A   G L  ++ L++  
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 212 ANANIVAG--GATPLHIAADIGSTEIIKCLLKAG 243
           A+        G T   +A   G  E++  +   G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 9e-09
 Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 4/155 (2%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            L  AA  G  +    LL+   ++V+ Q+  G T  L   + G+ E A+ L   GANP +
Sbjct: 4   ELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTA-LQVMKLGNPEIARRLLLRGANPDL 61

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHH 178
               G   +H +A  G ++ L  LL   A+V+ E + G   +  A       V   L  H
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 179 ANP--NAETEDNITPLLSAVAAGSLTCLDLLIQAG 211
                        T    A   G    + L+   G
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 2e-08
 Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 2/150 (1%)

Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAE 184
             L  +A  G++E LT LL     V++++  G   +     G  E  + LL   ANP+ +
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 185 TEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGA 244
                  +  A  AG L  L  L++  A+ NI           A       +   L    
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 245 DP--NVTDEDGQKPIQVAAARGNREAVEIL 272
                  +  G     +A   G  E V ++
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 4/28 (14%), Positives = 9/28 (32%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLE 77
             ++     A   A   G+ +V   +  
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 7e-10
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
             LL ++ +G  +  + +     +P++P++ G TALH++   G+ E++ +L+  G  V++
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 152 ESDAGTPLIWAAGHGQQEAV-KVLLEHHANPNAETEDNI---TPLLSAVAAGSLTCLDLL 207
               G   +  A       V K L+E  A   A T  ++         +  G   C   L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 208 IQAGAN 213
                 
Sbjct: 123 YGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 7e-09
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           L  ++ EG+ D+ + ++ E   D    +++G T L +A   GHTE  K+L + G N    
Sbjct: 5   LLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 63

Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG----TPLIWAAGHGQQEAVKVLL 175
            + G T LH +A   N+++  +L+  GA V + + +              G  +  + L 
Sbjct: 64  DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

Query: 176 EHHAN 180
                
Sbjct: 124 GVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 9e-09
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA-N 215
             L+ ++  G+ + V+ ++    +P+   ++ IT L +AV AG    +  L+Q G N   
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 216 IVAGGATPLHIAADIGSTEIIKCLLKAGADPN-VTDEDGQKPIQVAAA--RGNREAVEIL 272
             + G TPLH AA   + ++ K L+++GA    +T  D Q           G  +  + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 1e-06
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 2/122 (1%)

Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPN 182
            A  L  +A  G +E +  LL  GA  ++ +  G   I     G     ++LL H A PN
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 183 AETEDNITPLLSAVAAGSLTCLDLLIQAGANAN--IVAGGATPLHIAADIGSTEIIKCLL 240
                 +T  +   A        +++           A G  P+ +A ++G  ++ + L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 241 KA 242
            A
Sbjct: 123 AA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-05
 Identities = 28/124 (22%), Positives = 37/124 (29%), Gaps = 1/124 (0%)

Query: 88  EDGETPLLHAARQGHTETAKYLFEHGANP-TIPSNLGATALHHSAGIGNIELLTYLLSKG 146
           E     L  AA +G  E  + L E GANP    S           G   +  L  L    
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 147 AEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL 206
                 +    P+  AA  G  + + VL    A  +        P+  A   G       
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 207 LIQA 210
           L  A
Sbjct: 121 LRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-05
 Identities = 16/118 (13%), Positives = 30/118 (25%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            L  AA  G+ +  + LLE                 +             L     N   
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLE 176
           P+ L       +       L+    +       ++    P+  A   G ++  + L  
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 1e-04
 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 155 AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA 214
           +   L  AA  G+ E V+ LLE  ANPNA       P+   +   +     LL+      
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 215 NIVAGGAT-PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                  T P+H AA  G  + +  L +AGA  +V D  G+ P+ +A   G+R+    L
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 90  GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
            +   + A + G  +  K     G +       G   LH++A  G +E+L +LL KGA++
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 150 DSESDAGTPLIWAAG-HGQQEAVKVLLEHHANPNAETEDNITPLLSA 195
           ++        + +A   G    VK+LL   A+   +  D +T L + 
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	90.93
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	88.04
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	86.92
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	84.08

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-40  Score=306.64  Aligned_cols=279  Identities=31%  Similarity=0.471  Sum_probs=220.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHH
Q 016683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL   95 (384)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   95 (384)
                      +|||.||..|++++|++|++.    |.++     +..|..|.||||+|+..|+.+++++|+++ |++++.++..|.||||
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~----g~~i-----n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~~~~g~t~L~   71 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQR----GASP-----NVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLH   71 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT----TCCS-----CCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTSCCHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHC----CCCC-----CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHH
Confidence            689999999999999999987    5544     56789999999999999999999999998 9999999999999999


Q ss_pred             HHHHcCCHHHHHHHH-----------------------------------------------------------------
Q 016683           96 HAARQGHTETAKYLF-----------------------------------------------------------------  110 (384)
Q Consensus        96 ~A~~~g~~~~v~~Ll-----------------------------------------------------------------  110 (384)
                      +|+..|+.+++++|+                                                                 
T Consensus        72 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~l  151 (408)
T d1n11a_          72 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL  151 (408)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHH
Confidence            999888776666554                                                                 


Q ss_pred             -HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC----------------------------------CC
Q 016683          111 -EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES----------------------------------DA  155 (384)
Q Consensus       111 -~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~----------------------------------~~  155 (384)
                       ++|++++..+..|.+|||+|+..|+.+++++|+++|++++..+                                  .+
T Consensus       152 l~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  231 (408)
T d1n11a_         152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG  231 (408)
T ss_dssp             HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             HHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCC
Confidence             4445555555666666666666666666666666665543221                                  11


Q ss_pred             CCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHH
Q 016683          156 GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE  234 (384)
Q Consensus       156 ~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~  234 (384)
                      .||++.|+..++.++++++...+...+..+..|.||++.|+..++.+++++|+++|++++.. ..+.||||.++..++.+
T Consensus       232 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~  311 (408)
T d1n11a_         232 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK  311 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSH
T ss_pred             CCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcce
Confidence            25566666666666666666666666667778889999999999999999999999999877 67899999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhHHHHHh
Q 016683          235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRN  307 (384)
Q Consensus       235 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (384)
                      +++++++.|++++.+|.+|.||||+|+++|+.++|++|+++++. ++..+..+.+.+.++  ...+..+.++.
T Consensus       312 ~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd-~n~~d~~G~t~L~~A--~~~~~~~iv~~  381 (408)
T d1n11a_         312 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIA--KRLGYISVTDV  381 (408)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCSSSCCHHHHH--HHTTCHHHHHH
T ss_pred             eeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHH--HHcCCHHHHHH
Confidence            99999999999999999999999999999999999999998765 445554555555444  44455555443

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-40  Score=281.04  Aligned_cols=218  Identities=31%  Similarity=0.411  Sum_probs=208.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 016683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (384)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  135 (384)
                      +++.|+.+|..|+++.|+.++...+..++.+|..|+||||+|+..|+.+++++|++.+.+....+..+.++++.++..++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            57899999999999999988888789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 016683          136 IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA  214 (384)
Q Consensus       136 ~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~  214 (384)
                      .+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.++
T Consensus        83 ~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i  162 (223)
T d1uoha_          83 DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST  162 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             cchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcccccee
Confidence            999999999999998877665 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcC
Q 016683          215 NIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFP  274 (384)
Q Consensus       215 ~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  274 (384)
                      +.. ..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+| ..|+.+++++|++
T Consensus       163 ~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         163 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             eeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            987 8899999999999999999999999999999999999999998 5799999999985

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-40  Score=288.27  Aligned_cols=226  Identities=27%  Similarity=0.310  Sum_probs=189.0

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCCC---CcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 016683           52 KDANKRGALHFAAREGKTDVCKYLLEELKLD---VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH  128 (384)
Q Consensus        52 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~  128 (384)
                      .+.+|.||||+||.+|+.+++++|++. |++   ++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~-~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhh
Confidence            467899999999999999999999997 776   6778899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCC--------------CHhHHHHHc-CCHHHHHHHHhCCCCCCCCCCCCCCHHH
Q 016683          129 HSAGIGNIELLTYLLSKGAEVDSESDAG--------------TPLIWAAGH-GQQEAVKVLLEHHANPNAETEDNITPLL  193 (384)
Q Consensus       129 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--------------~~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  193 (384)
                      +|+..++.+++++|++.+..........              .++...... ............+.+++.++..|.||||
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence            9999999999999998775543221111              011111111 1111222222345667888999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCcccc--CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHh
Q 016683          194 SAVAAGSLTCLDLLIQAGANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI  271 (384)
Q Consensus       194 ~A~~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~  271 (384)
                      +|+..++.+++++|++.+++.+..  ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+++.+++++
T Consensus       164 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~  243 (255)
T d1oy3d_         164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL  243 (255)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred             ccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence            999999999999999999998865  679999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCC
Q 016683          272 LFPLTSE  278 (384)
Q Consensus       272 Ll~~~~~  278 (384)
                      |+++|+.
T Consensus       244 Ll~~Ga~  250 (255)
T d1oy3d_         244 LRAHGAP  250 (255)
T ss_dssp             HHHTTCC
T ss_pred             HHHcCCC
Confidence            9999885

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-38  Score=270.83  Aligned_cols=215  Identities=31%  Similarity=0.419  Sum_probs=203.2

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHH
Q 016683           17 QFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLH   96 (384)
Q Consensus        17 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   96 (384)
                      .|+.+|..|+++.|+.++..        .+...+.+|.+|+||||+||..|+.+++++|+.. +......+..+.++++.
T Consensus         6 ~~~~~a~~G~~~~v~~~l~~--------~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~-~~~~~~~~~~~~~~~~~   76 (223)
T d1uoha_           6 MVCNLAYSGKLEELKESILA--------DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHI   76 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH--------CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHh--------CCCcCcCcCCCCCCHHHHHHHhhhhccccccccc-ccccccccccccccccc
Confidence            47889999999999999987        4556788999999999999999999999999998 88888888999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHH
Q 016683           97 AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLL  175 (384)
Q Consensus        97 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll  175 (384)
                      |+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..+ ||||+|+..++.+++++|.
T Consensus        77 ~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~  156 (223)
T d1uoha_          77 AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL  156 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhc
Confidence            999999999999999999999999999999999999999999999999999998777666 9999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHH
Q 016683          176 EHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLK  241 (384)
Q Consensus       176 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~  241 (384)
                      +.+.+++..|..|+||||.|+..|+.+++++|++.|++++.. ..|+||||+| ..|+.+++++|++
T Consensus       157 ~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         157 YYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             cccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            999999999999999999999999999999999999999987 7899999998 5799999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-37  Score=266.89  Aligned_cols=218  Identities=26%  Similarity=0.305  Sum_probs=199.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCCcHHHHHHHc
Q 016683           57 RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPT---IPSNLGATALHHSAGI  133 (384)
Q Consensus        57 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~  133 (384)
                      +||||+||..|+.++++.|++..+.+++.+|.+|+||||+|+..|+.+++++|+++|++++   ..+..|.+|+++++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            5899999999999999999998788999999999999999999999999999999999986   4567799999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCC---CCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 016683          134 GNIELLTYLLSKGAEVDSESD---AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (384)
Q Consensus       134 ~~~~~~~~Ll~~~~~~~~~~~---~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  210 (384)
                      +..++++.++..+...+....   ..++++.++..++.+++++|++.+.+.+..+..|+||||+|+..|+.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence            999999999999876654332   33999999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCcccc-CCCchHHHHHHhhCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 016683          211 G-ANANIV-AGGATPLHIAADIGSTEIIKCLLK-AGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (384)
Q Consensus       211 g-~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (384)
                      + .+++.. ..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+   +.+++++|++++.
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~  227 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV  227 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCC
T ss_pred             ccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCC
Confidence            8 566766 789999999999999999999996 59999999999999999998   4589999998765

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=282.38  Aligned_cols=253  Identities=30%  Similarity=0.404  Sum_probs=235.7

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCC
Q 016683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE   91 (384)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   91 (384)
                      +....+++.|+..++.+++++|++.    +..+     +..+.+|.+|||+|+..|+.+++++|+.. |++++..+..|.
T Consensus       130 ~~~~~~l~~a~~~~~~~~v~~ll~~----~~~~-----~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~  199 (408)
T d1n11a_         130 KKGFTPLHVAAKYGKVRVAELLLER----DAHP-----NAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGY  199 (408)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHT----TCCT-----TCCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCC
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHc----CCCC-----CcCCCcCchHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCC
Confidence            3445679999999999999999987    3332     46678899999999999999999999998 999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHH
Q 016683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA  170 (384)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~  170 (384)
                      ||+|.++...+.++...|+..+......+..|.|||++|+..++.+++++++..+...+..+..+ +|++.|+..++.++
T Consensus       200 t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i  279 (408)
T d1n11a_         200 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV  279 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             CcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHH
Confidence            99999999999999999999999999999999999999999999999999999998887766555 99999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCC
Q 016683          171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVT  249 (384)
Q Consensus       171 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  249 (384)
                      +++|+++|++++..+..+.||||.++..++.++++++++.|++++.. ..|+||||+|++.|+.++|++|+++|++++.+
T Consensus       280 ~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~  359 (408)
T d1n11a_         280 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV  359 (408)
T ss_dssp             HHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            99999999999999999999999999999999999999999999987 78999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHhhcC
Q 016683          250 DEDGQKPIQVAAARGNREAVEILFP  274 (384)
Q Consensus       250 ~~~g~t~l~~A~~~~~~~~v~~Ll~  274 (384)
                      |.+|+||||+|+++|+.++|++|..
T Consensus       360 d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         360 SSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             CSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999987643

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1e-37  Score=277.00  Aligned_cols=217  Identities=31%  Similarity=0.405  Sum_probs=196.4

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 016683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (384)
Q Consensus        53 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  132 (384)
                      +..+.|+|+.||..|++++|++|+++ |+++|.+|.+|.||||+|+.+|+.++|++|+++|++....+..+.+||+.++.
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccc
Confidence            44567999999999999999999998 99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhC---------------------------CCCCCCC
Q 016683          133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH---------------------------HANPNAE  184 (384)
Q Consensus       133 ~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~---------------------------~~~~~~~  184 (384)
                      .++.++++.|+++|...+..+..+ +++++|+..++.+.++.++..                           ..+....
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             ccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            999999999999999887766544 999999999988888887753                           2234556


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q 016683          185 TEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR  263 (384)
Q Consensus       185 ~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  263 (384)
                      +..|.||||.|+..|+.+++++|++.|++++.. ..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|++ 
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e-  274 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE-  274 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS-
T ss_pred             cCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH-
Confidence            778999999999999999999999999999977 789999999999999999999999999999999999999999975 


Q ss_pred             CCHHHHHhhcC
Q 016683          264 GNREAVEILFP  274 (384)
Q Consensus       264 ~~~~~v~~Ll~  274 (384)
                         +++++|.+
T Consensus       275 ---~~~~~L~~  282 (291)
T d1s70b_         275 ---DILGYLEE  282 (291)
T ss_dssp             ---GGGHHHHH
T ss_pred             ---HHHHHHHH
Confidence               45555543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-35  Score=258.51  Aligned_cols=259  Identities=25%  Similarity=0.366  Sum_probs=230.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCc
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   92 (384)
                      ++.+.|+.||+.||+++|++|++.    |.+++    ...+..|.||||+|+..|+.+++++|++. +...+..+..+.+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~----G~din----~~~~~~g~tpL~~A~~~~~~eiv~~L~~~-~~~~~~~~~~~~~   74 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEG----GANVN----FQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGAT   74 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT----TCCTT----CCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCC
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHC----CCCcC----ccCCCCCCCHHHHHHHcCCHHHhhhhccc-cccccccccccch
Confidence            566789999999999999999997    54432    22345799999999999999999999987 8888888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-----------CCCCHhHH
Q 016683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-----------DAGTPLIW  161 (384)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-----------~~~~~l~~  161 (384)
                      |.+.|+..+..+...++++...+....+..+.++++.|+..++...+..++....+.+...           .+.||||+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  154 (285)
T d1wdya_          75 PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD  154 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred             hhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHH
Confidence            9999999999999999999988888889999999999999999999999999877665432           23499999


Q ss_pred             HHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcC----CHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHH
Q 016683          162 AAGHGQQEAVKVLLEH-HANPNAETEDNITPLLSAVAAG----SLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEI  235 (384)
Q Consensus       162 A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~----~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~  235 (384)
                      |+..|+.+++++|+++ |++++..+..|.++++.+...+    ..+++++|+++|++++.. ..|.||||+|+..|+.++
T Consensus       155 A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~  234 (285)
T d1wdya_         155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL  234 (285)
T ss_dssp             HHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHH
Confidence            9999999999999974 8999999999999888776543    457999999999999977 779999999999999999


Q ss_pred             HHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCC
Q 016683          236 IKCLLK-AGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP  280 (384)
Q Consensus       236 v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  280 (384)
                      +++|++ .|++++.+|.+|.||||+|+++|+.+++++|+++|+...
T Consensus       235 v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             HHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            999998 599999999999999999999999999999999987643

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=7.5e-38  Score=275.63  Aligned_cols=221  Identities=25%  Similarity=0.400  Sum_probs=188.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHh-------CCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Q 016683           54 ANKRGALHFAAREGKTDVCKYLLEE-------LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA  126 (384)
Q Consensus        54 ~~g~t~L~~A~~~g~~~~v~~Ll~~-------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  126 (384)
                      .+|+||||+||..|+.++|++|+..       .|+++|.+|.+|+||||+|+..|+.++|++|+++|++++..|..|.||
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~  110 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  110 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccccccccccc
Confidence            5699999999999999998877532       389999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCC---CCCCCCCC-CCHhHHHHHcCCHH---HHHHHHhCCC--------CCCCCCCCCCCH
Q 016683          127 LHHSAGIGNIELLTYLLSKGA---EVDSESDA-GTPLIWAAGHGQQE---AVKVLLEHHA--------NPNAETEDNITP  191 (384)
Q Consensus       127 L~~A~~~~~~~~~~~Ll~~~~---~~~~~~~~-~~~l~~A~~~~~~~---~~~~Ll~~~~--------~~~~~~~~g~t~  191 (384)
                      |++|+..++.+++.++...+.   .++..+.. .++.+.+...+..+   .+..+.+...        ..+..+..|.||
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  190 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  190 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             ccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCc
Confidence            999999999999999887642   33333333 38888888776543   4444444322        235566789999


Q ss_pred             HHHHHHcCCHHHHHHHH-HcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 016683          192 LLSAVAAGSLTCLDLLI-QAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV  269 (384)
Q Consensus       192 l~~A~~~~~~~~v~~Ll-~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v  269 (384)
                      ||.++..++.+++++++ ..+.+.+.. ..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+.+|+.++|
T Consensus       191 L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv  270 (277)
T d2fo1e1         191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV  270 (277)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999998755 566777765 7799999999999999999999999999999999999999999999999999


Q ss_pred             HhhcC
Q 016683          270 EILFP  274 (384)
Q Consensus       270 ~~Ll~  274 (384)
                      ++|++
T Consensus       271 ~lL~~  275 (277)
T d2fo1e1         271 DIFDR  275 (277)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            99975

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-34  Score=247.96  Aligned_cols=218  Identities=25%  Similarity=0.352  Sum_probs=196.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCc---CCCCCCCc
Q 016683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVD---TQDEDGET   92 (384)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~g~t   92 (384)
                      .|||.||..|++++|++|++.        .+...+.+|.+|.||||+|+..|+.+++++|++. |++++   ..+..|.+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~--------~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~   72 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHS--------KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGWT   72 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHH--------CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTT-CTTCCGGGCCCTTSCC
T ss_pred             HhHHHHHHcCCHHHHHHHHHc--------CCCcccccCCCCCCHHHHHHHcCCccccchhhhh-hccccccccccccccc
Confidence            489999999999999999986        3345578899999999999999999999999997 88876   45778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHH
Q 016683           93 PLLHAARQGHTETAKYLFEHGANP--TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQE  169 (384)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~  169 (384)
                      |+|+|+..+..++++.++..+...  ...+..+.|+++.++..++.++++.|++.+...+..+..+ ||||+|+..|+.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~  152 (229)
T d1ixva_          73 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK  152 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccc
Confidence            999999999999999999987754  4567789999999999999999999999999988766655 9999999999999


Q ss_pred             HHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCC
Q 016683          170 AVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQ-AGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGAD  245 (384)
Q Consensus       170 ~~~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  245 (384)
                      ++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++ .|++++.. ..|+||||+|+.   .+++++|++.|+|
T Consensus       153 ~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         153 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            999999987 6789999999999999999999999999996 59999988 889999999984   5899999999987

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-35  Score=255.78  Aligned_cols=227  Identities=24%  Similarity=0.205  Sum_probs=178.5

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCC
Q 016683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE   91 (384)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   91 (384)
                      +++.++||.||+.|+.+++++|++..    .+  ....+.+|..|.||||+||..|+.+++++|++. |++++..|..|.
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~----a~--~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~i~~~d~~g~   79 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFS----AG--HEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGH   79 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHH----TT--SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcC----CC--cccccCcCCCCCCccchHHhhcccccccccccc-cccccccccccc
Confidence            55678999999999999999999873    22  234567889999999999999999999999998 999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------CCCcHHHHHHHcCC----HHHHHHHHhCCCCCCCCCCCC-
Q 016683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSN----------LGATALHHSAGIGN----IELLTYLLSKGAEVDSESDAG-  156 (384)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t~L~~A~~~~~----~~~~~~Ll~~~~~~~~~~~~~-  156 (384)
                      ||||+|+..|+.+++++|++.+........          ...+....+.....    ..........+..++..+..+ 
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            999999999999999999987654322111          01111111111111    111111112234445555444 


Q ss_pred             CHhHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHH
Q 016683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAE-TEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE  234 (384)
Q Consensus       157 ~~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~  234 (384)
                      ||||+|+..++.+++++|++.+++.+.. +..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..++.+
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~  239 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI  239 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             ccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            9999999999999999999999998864 578999999999999999999999999999988 77999999999999999


Q ss_pred             HHHHHHHCCCC
Q 016683          235 IIKCLLKAGAD  245 (384)
Q Consensus       235 ~v~~Ll~~ga~  245 (384)
                      ++++|+++||+
T Consensus       240 i~~~Ll~~Ga~  250 (255)
T d1oy3d_         240 LARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHcCCC
Confidence            99999999996

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-34  Score=242.94  Aligned_cols=216  Identities=27%  Similarity=0.367  Sum_probs=194.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH---hCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 016683           55 NKRGALHFAAREGKTDVCKYLLE---ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA  131 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  131 (384)
                      +|.||||+||.+|+.+++++|++   ..|++++.+|..|+||||+|+..|+.+++++|+++|++.+..+..|.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            59999999999999999999986   359999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCC----CCC-CCCCHhHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHH
Q 016683          132 GIGNIELLTYLLSKGAEVD----SES-DAGTPLIWAAGHGQQEAVKVLLEHHANPN-AETEDNITPLLSAVAAGSLTCLD  205 (384)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~----~~~-~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~A~~~~~~~~v~  205 (384)
                      ..++..+++.+........    ... ...++++.+.........+.|.....+.. .....+.++++.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            9999999998877543321    111 23389999999999999999998776644 45567899999999999999999


Q ss_pred             HHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 016683          206 LLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE  270 (384)
Q Consensus       206 ~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~  270 (384)
                      ++++.|.+.+.. ..|.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+++|+.++||
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            999999998877 78999999999999999999999999999999999999999999999999885

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-35  Score=247.61  Aligned_cols=197  Identities=26%  Similarity=0.303  Sum_probs=168.1

Q ss_pred             CCCcHHHHHHHcCCHHHHH----HHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 016683           55 NKRGALHFAAREGKTDVCK----YLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS  130 (384)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~----~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  130 (384)
                      +|.||||+|+..|+.+++.    ++... ++++|.+|..|+||||+|+..|+.+++++|+++|++++..|..|.|||+++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~-~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD-LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC-CCCcccCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            5999999999999965544    44454 889999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 016683          131 AGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (384)
Q Consensus       131 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  210 (384)
                      +..++.++++.|++.+.......                          ........|.||||.|+..++.+++++++..
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~--------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  133 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHS--------------------------ILKATNYNGHTCLHLASIHGYLGIVELLVSL  133 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSC--------------------------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccchhhhhcccccccc--------------------------cccccccccchhhhHHhhcCChhheeeeccc
Confidence            99999999999998876543211                          1223344578899999999999999999999


Q ss_pred             CCCcccc--CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 016683          211 GANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       211 g~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                      |..++..  .+|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+.+++.+++++|.+....
T Consensus       134 ~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         134 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             CcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            8888765  5699999999999999999999999999999999999999999999999999999887543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=2e-33  Score=236.70  Aligned_cols=203  Identities=31%  Similarity=0.377  Sum_probs=187.3

Q ss_pred             HHHHHHHHHhCCCCCcC-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 016683           69 TDVCKYLLEELKLDVDT-QDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA  147 (384)
Q Consensus        69 ~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  147 (384)
                      .++|++|+++ |+++|. .|.+|.||||+||..|+.+++++|++.|++++..+..+.++++.++..++............
T Consensus         2 ~~~v~~Ll~~-g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQ-GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHC-CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence            5899999998 999987 58999999999999999999999999999999999999999999999999988877776654


Q ss_pred             CCCC--CCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHH
Q 016683          148 EVDS--ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPL  224 (384)
Q Consensus       148 ~~~~--~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L  224 (384)
                      ....  ...+.++.+.+.........+.|...+++++..+..|.|||+.++..+..++++.+++.+.+++.. ..|.|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL  160 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL  160 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccccccccccc
Confidence            4332  233448888999999999999999999999999999999999999999999999999999999887 7899999


Q ss_pred             HHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhh
Q 016683          225 HIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL  272 (384)
Q Consensus       225 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L  272 (384)
                      |+|+..|+.+++++|+++|+|++.+|..|+||||+|+++|+.++|++|
T Consensus       161 ~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         161 FLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             chhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999999999999999999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.8e-33  Score=248.15  Aligned_cols=215  Identities=26%  Similarity=0.373  Sum_probs=192.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcH
Q 016683           14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETP   93 (384)
Q Consensus        14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   93 (384)
                      .-++|+.||..|++++|++|++.    |.++     +.+|.+|.||||+|+..|+.+++++|++. +.+.+..+..+.||
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~----Gadv-----n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~~  109 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLER----GADI-----NYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIP  109 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH----CCCT-----TCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHC----CCCC-----CccCCCCCcHHHHHHhcCCceeeeeeccc-cccccccccccccc
Confidence            44689999999999999999987    5554     57899999999999999999999999998 99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-C-------------------------
Q 016683           94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG-A-------------------------  147 (384)
Q Consensus        94 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~-------------------------  147 (384)
                      |+.|+..++.+++++|+++|+..+..+..+.+++++|+..+..++++.++... .                         
T Consensus       110 L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (291)
T d1s70b_         110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH  189 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccc
Confidence            99999999999999999999999999999999999999999998888887531 1                         


Q ss_pred             -C-CCCCCCCCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHH
Q 016683          148 -E-VDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPL  224 (384)
Q Consensus       148 -~-~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L  224 (384)
                       . ......+.|||+.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.++|++|+++|++++.. ..|.|||
T Consensus       190 ~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL  269 (291)
T d1s70b_         190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF  269 (291)
T ss_dssp             CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred             cccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence             1 122233459999999999999999999999999999999999999999999999999999999999988 7899999


Q ss_pred             HHHHhhCCHHHHHHHHHC
Q 016683          225 HIAADIGSTEIIKCLLKA  242 (384)
Q Consensus       225 ~~A~~~~~~~~v~~Ll~~  242 (384)
                      |+|++    +++++|.+.
T Consensus       270 ~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         270 DVADE----DILGYLEEL  283 (291)
T ss_dssp             TSCCS----GGGHHHHHH
T ss_pred             HHHHH----HHHHHHHHH
Confidence            99976    566666653

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-30  Score=229.83  Aligned_cols=259  Identities=28%  Similarity=0.335  Sum_probs=221.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 016683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQD-EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG  134 (384)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  134 (384)
                      +.|+||.|+.+|+.++|++|+++ |+++|.++ ..|.||||+|+..|+.+++++|++.+......+..+.+|.+.+...+
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~-G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            57899999999999999999998 99998775 47999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCC----------CCCCCCHHHHHHHcCCHHH
Q 016683          135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE----------TEDNITPLLSAVAAGSLTC  203 (384)
Q Consensus       135 ~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~----------~~~g~t~l~~A~~~~~~~~  203 (384)
                      ..+...++++...+....+..+ ++++.|+..++...+..++....+++..          ...|.||||+|+..|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence            9999999999877665544444 9999999999999999999987766543          3458999999999999999


Q ss_pred             HHHHHHc-CCCcccc-CCCchHHHHHHhh----CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 016683          204 LDLLIQA-GANANIV-AGGATPLHIAADI----GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (384)
Q Consensus       204 v~~Ll~~-g~~~~~~-~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (384)
                      +++|+++ |++++.. ..|.++++.+...    +..+++++|+++|++++.++..|.||||+|+..|+.+++++|++..+
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g  243 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  243 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCC
Confidence            9999975 7888876 6677776665443    44579999999999999999999999999999999999999998665


Q ss_pred             CCCCCCCCchhhHHHHHHhhhchhHHHHHhhhhcCCCCCC
Q 016683          278 EDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDK  317 (384)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  317 (384)
                      .+....+..+  .+++..+....+.+.++.|++.++.+..
T Consensus       244 ~din~~d~~G--~TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         244 IEINDTDSDG--KTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             CCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             CCCcCCCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            5555444444  4456666777889999999999988754

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=5.6e-31  Score=231.26  Aligned_cols=225  Identities=23%  Similarity=0.277  Sum_probs=190.5

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHhh----hcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCC
Q 016683           12 RERVQQFLNAACTGNLDLLKKIAKQLD----DQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD   87 (384)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~----~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~   87 (384)
                      +.+.++||.||..|+.++|+.|+....    +.|+++     +.+|.+|.||||+|+..|+.+++++|++. |++++.++
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-----n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-Gad~n~~~  104 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-----NAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYN  104 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-----TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-----cccCCCCCeeecccccccccccccccccc-cccccccc
Confidence            456789999999999999999986532    234444     67899999999999999999999999998 99999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCC---CCCCCCCCCCCcHHHHHHHcCCHH---HHHHHHhCCCCC--------CCCC
Q 016683           88 EDGETPLLHAARQGHTETAKYLFEHG---ANPTIPSNLGATALHHSAGIGNIE---LLTYLLSKGAEV--------DSES  153 (384)
Q Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~---~~~~Ll~~~~~~--------~~~~  153 (384)
                      ..|.|||++|+..++.++++++...+   ..++..+..+.++.+.+...+..+   .+..+.+.....        +...
T Consensus       105 ~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (277)
T d2fo1e1         105 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK  184 (277)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSS
T ss_pred             ccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccc
Confidence            99999999999999999999998754   456677888999999998877543   444444443221        1222


Q ss_pred             -CCCCHhHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhh
Q 016683          154 -DAGTPLIWAAGHGQQEAVKVLL-EHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADI  230 (384)
Q Consensus       154 -~~~~~l~~A~~~~~~~~~~~Ll-~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~  230 (384)
                       .+.|||++++..++.+++++++ ..+.+.+.+|..|.||||+|+..|+.+++++|+++|++++.. ..|+||||+|+..
T Consensus       185 ~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~  264 (277)
T d2fo1e1         185 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN  264 (277)
T ss_dssp             CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHT
T ss_pred             cCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHc
Confidence             3349999999999999998754 678899999999999999999999999999999999999987 8899999999999


Q ss_pred             CCHHHHHHHHHC
Q 016683          231 GSTEIIKCLLKA  242 (384)
Q Consensus       231 ~~~~~v~~Ll~~  242 (384)
                      |+.++|++|+++
T Consensus       265 ~~~~iv~lL~~c  276 (277)
T d2fo1e1         265 NHHNIVDIFDRC  276 (277)
T ss_dssp             TCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHh
Confidence            999999999864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-30  Score=218.82  Aligned_cols=219  Identities=25%  Similarity=0.352  Sum_probs=196.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCc
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   92 (384)
                      ++.++||.||..|++++++.|++.+.+.|.++     +.+|..|.||||+|+..|+.+++++|++. |++.+.....|.+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-----n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~   75 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-----DIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQT   75 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-----CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CccCCCCCccceehhcccccccccccccc-ccccccccccccc
Confidence            35679999999999999999999877766665     57889999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCCHhHHHHHcC
Q 016683           93 PLLHAARQGHTETAKYLFEHGAN----PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES--DAGTPLIWAAGHG  166 (384)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~--~~~~~l~~A~~~~  166 (384)
                      +++.|...++.++++.+......    .+.......++|+.+.........+.|.....+.....  .+.++++.|+..+
T Consensus        76 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~  155 (228)
T d1k1aa_          76 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN  155 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             ccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhh
Confidence            99999999999999988775432    34455668899999999999999999998877654333  3349999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHH
Q 016683          167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIK  237 (384)
Q Consensus       167 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~  237 (384)
                      ...+++.+++.+.+.+..+..|.||||+|+..|+.+++++|+++|++++.. ..|+||||+|+++|+.++||
T Consensus       156 ~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         156 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            999999999999999999999999999999999999999999999999987 88999999999999999885

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.9e-29  Score=212.04  Aligned_cols=204  Identities=28%  Similarity=0.402  Sum_probs=182.3

Q ss_pred             hHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHH
Q 016683           27 LDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA  106 (384)
Q Consensus        27 ~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  106 (384)
                      .++|++|+++..+    +    ....|.+|.||||+||..|+.+++++|++. |++++..+..+.++++.++..++....
T Consensus         2 ~~~v~~Ll~~g~d----i----n~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~-g~~~n~~~~~~~~~~~~~~~~~~~~~~   72 (209)
T d1ot8a_           2 AQVISDLLAQGAE----L----NATMDKTGETSLHLAARFARADAAKRLLDA-GADANSQDNTGRTPLHAAVAADAMGVF   72 (209)
T ss_dssp             HHHHHHHHHHHHH----H----HHHHHHHCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHCCCC----c----CcCcCCCCCCHHHHHHHcCCHHHHHHHHhh-ccccccccccccccccccccccccccc
Confidence            4789999998332    2    223578899999999999999999999997 999999999999999999999998887


Q ss_pred             HHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCC
Q 016683          107 KYLFEHGAN-PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE  184 (384)
Q Consensus       107 ~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~  184 (384)
                      ......... .......|.++.+.+.........+.|...+.+++..+..+ |||+.++..+..++++.+++.+.+++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~  152 (209)
T d1ot8a_          73 QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ  152 (209)
T ss_dssp             HHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccc
Confidence            777665433 34455668899999999999999999999999988776655 9999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHH
Q 016683          185 TEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCL  239 (384)
Q Consensus       185 ~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~L  239 (384)
                      |..|.||||+|+..|+.+++++|+++|++++.. ..|+||||+|+++|+.++|++|
T Consensus       153 d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         153 DDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999999877 7899999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.97  E-value=1.6e-32  Score=248.80  Aligned_cols=227  Identities=17%  Similarity=0.141  Sum_probs=174.2

Q ss_pred             hhhcccCCCCcHHHHHHHcCCHHHHHH---HHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--CC
Q 016683           48 VADIKDANKRGALHFAAREGKTDVCKY---LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS--NL  122 (384)
Q Consensus        48 ~~~~~d~~g~t~L~~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--~~  122 (384)
                      ....++..|.||||+||.+|+.+++++   |++. |+++|.+|..|+||||+||.+|+.++|++|+++|++++..+  ..
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~-~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~  160 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE  160 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhC-CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccC
Confidence            345678899999999999999988776   5665 99999999999999999999999999999999999998765  45


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCC---CCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCC-------CCCCCH
Q 016683          123 GATALHHSAGIGNIELLTYLLSKGAEVDS---ESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAET-------EDNITP  191 (384)
Q Consensus       123 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~---~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-------~~g~t~  191 (384)
                      |.||||+|+..|+.+++++|++.|+....   ...++ +|++.|+..|+.+++++|++.|++++..+       ..+.++
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  240 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP  240 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhH
Confidence            99999999999999999999999876532   22333 67788889999999999999987654322       223345


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCccc--c--------CCCchHHHHHHhhCCHHHHHHHHHCCCC-----CCCCCCCCCcH
Q 016683          192 LLSAVAAGSLTCLDLLIQAGANANI--V--------AGGATPLHIAADIGSTEIIKCLLKAGAD-----PNVTDEDGQKP  256 (384)
Q Consensus       192 l~~A~~~~~~~~v~~Ll~~g~~~~~--~--------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~g~t~  256 (384)
                      ++.+...+..+....+.....+...  .        ..+.++|+.|+..++.+++++|++.+..     .+..+.+|.||
T Consensus       241 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~  320 (346)
T d2ajaa1         241 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL  320 (346)
T ss_dssp             HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred             HHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcH
Confidence            5555444444443333333222211  1        1135789999999999999999987753     44556789999


Q ss_pred             HHHHHHcCCHHHHHhhcCC
Q 016683          257 IQVAAARGNREAVEILFPL  275 (384)
Q Consensus       257 l~~A~~~~~~~~v~~Ll~~  275 (384)
                      ||+|++.|+.++|++|++.
T Consensus       321 LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         321 LRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHHcCcHHHHHHHhCC
Confidence            9999999999999999965

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.8e-31  Score=223.18  Aligned_cols=193  Identities=22%  Similarity=0.236  Sum_probs=147.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHH
Q 016683           15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPL   94 (384)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   94 (384)
                      .++||.||..|+.+++++|++.+...+..+     +.+|.+|+||||+|+..|+.+++++|++. |++++..|..|.|||
T Consensus         3 ~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-----n~~d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~~~d~~g~t~l   76 (221)
T d1iknd_           3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFL-----NFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPL   76 (221)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCC-----CCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-----ccCCCCCCccccccccccccccccccccc-ccccccccccccccc
Confidence            468999999999988888877665545444     67899999999999999999999999997 999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC--CCCHhHHHHHcC
Q 016683           95 LHAARQGHTETAKYLFEHGANPT------IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESD--AGTPLIWAAGHG  166 (384)
Q Consensus        95 ~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~--~~~~l~~A~~~~  166 (384)
                      +.|+..|+.+++++|++.+....      .....|.||||.|+..++.+++++|+..|..++....  +.||||+|+..|
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g  156 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  156 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             ccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccc
Confidence            99999999999999999876543      2344577888888888888887777777776654432  336777777777


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 016683          167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN  213 (384)
Q Consensus       167 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~  213 (384)
                      +.+++++|+++|+|++.++..|.||||+|+..++.+++++|++.+.+
T Consensus       157 ~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         157 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            77777777777777766666666666666666666666666665543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-28  Score=196.87  Aligned_cols=152  Identities=30%  Similarity=0.387  Sum_probs=106.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 016683           58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE  137 (384)
Q Consensus        58 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  137 (384)
                      ++||+||..|+.++|++|+++ |++++.+|..|.||||+|+ .|+.+++++|+++|++++..+..|.++++.++..++..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            577888888888888888876 7888888888888887665 67788888888888887777777777777777777777


Q ss_pred             HHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 016683          138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA-NPNAETEDNITPLLSAVAAGSLTCLDLLIQAG  211 (384)
Q Consensus       138 ~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g  211 (384)
                      +++.|++.+.+++..+..+ +|+++|+..++.+++++|++++. +.+.++..|.||||+|+..++.+++++|+++|
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            7777777776665544333 66666666666666666666554 55555555666666666666666665555554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3e-28  Score=194.98  Aligned_cols=151  Identities=28%  Similarity=0.388  Sum_probs=96.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHH
Q 016683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA  170 (384)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~  170 (384)
                      +|||+||..|+.++|++|+++|++++..|..|.||||+|+ .|+.+++++|+++|++++..+..+ ++++.++..++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            6889999999999999999999999888888888888765 677777777777777665544433 56666666666666


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-Ccccc-CCCchHHHHHHhhCCHHHHHHHHHCC
Q 016683          171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA-NANIV-AGGATPLHIAADIGSTEIIKCLLKAG  243 (384)
Q Consensus       171 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~-~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g  243 (384)
                      ++.|++.+.+++..+..|.+|++.|+..++.+++++|+++++ +++.. ..|.||||+|+..|+.+++++|+++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            666666555555555555555555555555555555555443 33332 33445555555555555555554443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.9e-28  Score=191.95  Aligned_cols=151  Identities=26%  Similarity=0.378  Sum_probs=124.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 016683           58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE  137 (384)
Q Consensus        58 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  137 (384)
                      +.|+.||..|++++|++|++..+.+++..|..|+||||+|+ .|+.+++++|++++.+++..+..|.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            35889999999999999998778899999999999999886 48889999999999999988888999999998888888


Q ss_pred             HHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 016683          138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (384)
Q Consensus       138 ~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  210 (384)
                      ++++++++|++++..+..+ ||||+|+..|+.+++++|+ .|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            8888888888777665544 7888888888888777666 5677777777777777777777777777777654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.9e-27  Score=188.53  Aligned_cols=148  Identities=31%  Similarity=0.449  Sum_probs=88.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCHhHHHHHcCCHHHH
Q 016683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAV  171 (384)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~l~~A~~~~~~~~~  171 (384)
                      ||||.|++.|+.++|++|+++|++++ .|..|.||||+|+..++.++++.++.......                     
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~---------------------   61 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD---------------------   61 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT---------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccc---------------------
Confidence            56666666666666666666666554 45556666666665555555555554443332                     


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCC
Q 016683          172 KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD  250 (384)
Q Consensus       172 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  250 (384)
                                 ..+..+.++++.++...+.+++++++.+|++++.. ..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        62 -----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d  130 (153)
T d1awcb_          62 -----------ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS  130 (153)
T ss_dssp             -----------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             -----------ccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccC
Confidence                       22233334444444444444444444444444433 446667777777777777777777777777777


Q ss_pred             CCCCcHHHHHHHcCCHHHHHhh
Q 016683          251 EDGQKPIQVAAARGNREAVEIL  272 (384)
Q Consensus       251 ~~g~t~l~~A~~~~~~~~v~~L  272 (384)
                      ..|.||||+|+.+|+.+++++|
T Consensus       131 ~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         131 KFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHhC
Confidence            7777777777777777777765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.9e-27  Score=187.73  Aligned_cols=149  Identities=26%  Similarity=0.338  Sum_probs=125.4

Q ss_pred             CCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHH
Q 016683          156 GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE  234 (384)
Q Consensus       156 ~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~  234 (384)
                      +|||+.|++.|+.+++++|+++|++++ .+..|+||||+|+..++.++++.++......... ..+.++++.++...+.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            489999999999999999999999877 6889999999999999999999999988776655 67889999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCCchhhHHHHHHhhhchhHHHHHhh
Q 016683          235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNL  308 (384)
Q Consensus       235 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  308 (384)
                      ++++++.+|++++.+|..|.||||+|+..|+.+++++|++.+.. +...+..+.+.+.  .+......+.++.|
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-~~~~d~~g~Tpl~--~A~~~g~~eiv~lL  152 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFD--ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH--HHHHTTCHHHHHHH
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhheeeeccccccC-CcccCCCCCCHHH--HHHHcCCHHHHHhC
Confidence            99999999999999999999999999999999999999998754 3344444444444  44445555555443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.1e-27  Score=186.26  Aligned_cols=151  Identities=27%  Similarity=0.449  Sum_probs=137.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHH
Q 016683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL   95 (384)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   95 (384)
                      .+|+.||..|++++|++|++.        .....+.+|..|.||||+|+ .|+.+++++|++. +.+++..+..|.+|++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~--------~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~   73 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHR--------ELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ-GASPNVQDTSGTSPVH   73 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHT--------TCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHh--------CCCCCCccCCCCCccccccc-ccccccccccccc-cccccccccccccccc
Confidence            469999999999999999986        12234677899999999987 5899999999998 9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CHhHHHHHcCCHHHHHHH
Q 016683           96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL  174 (384)
Q Consensus        96 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~l~~A~~~~~~~~~~~L  174 (384)
                      .|+..++.+++++++++|++++.+|..|.||||+|+..|+.+++++|+ .|++++..+..+ ||||+|+..|+.+++++|
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~L  152 (156)
T d1bd8a_          74 DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL  152 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999887 678888776655 999999999999999999


Q ss_pred             HhC
Q 016683          175 LEH  177 (384)
Q Consensus       175 l~~  177 (384)
                      +++
T Consensus       153 l~h  155 (156)
T d1bd8a_         153 QGH  155 (156)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            975

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=3.5e-29  Score=226.66  Aligned_cols=220  Identities=16%  Similarity=0.128  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHH---HHHhhhcCCCccchhhhcccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCC--
Q 016683           13 ERVQQFLNAACTGNLDLLKKI---AKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD--   87 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~l---l~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--   87 (384)
                      .+.++|+.||..|+.++++.+   ++.    |..     .+.+|.+|.||||+||.+|+.++|++|++. |++++..+  
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~----~~~-----in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~-g~~~~~~~~~  158 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTS----DEI-----VKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQ  158 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--C----CSS-----CC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHS
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhC----CCc-----ccccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccc
Confidence            456789999999999888764   333    433     366788999999999999999999999997 99888765  


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC-----CC--CC-
Q 016683           88 EDGETPLLHAARQGHTETAKYLFEHGANPT---IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE-----SD--AG-  156 (384)
Q Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-----~~--~~-  156 (384)
                      .+|+||||+|+.+|+.++|++|++.|++..   ..+..+.||++.|+.+|+.+++++|++.|++++..     ..  .. 
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  238 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV  238 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTH
T ss_pred             cCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhh
Confidence            469999999999999999999999987753   33455678888899999999999999988654311     11  11 


Q ss_pred             CHhHHHHHcCCHHHHHHHHhCCCCC--CCCCC-------CCCCHHHHHHHcCCHHHHHHHHHcCCCcccc------CCCc
Q 016683          157 TPLIWAAGHGQQEAVKVLLEHHANP--NAETE-------DNITPLLSAVAAGSLTCLDLLIQAGANANIV------AGGA  221 (384)
Q Consensus       157 ~~l~~A~~~~~~~~~~~Ll~~~~~~--~~~~~-------~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~------~~g~  221 (384)
                      ++++.+...+..+....+.....+.  +..+.       .+.++++.++..+..+++++|++.+......      ..|+
T Consensus       239 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~  318 (346)
T d2ajaa1         239 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN  318 (346)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCC
T ss_pred             hHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCC
Confidence            5555555555444444333322221  11111       1346788888899999999999887643321      4589


Q ss_pred             hHHHHHHhhCCHHHHHHHHHC
Q 016683          222 TPLHIAADIGSTEIIKCLLKA  242 (384)
Q Consensus       222 t~L~~A~~~~~~~~v~~Ll~~  242 (384)
                      ||||+||+.|+.++|++|++.
T Consensus       319 T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         319 ELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHTCTTHHHHHTTS
T ss_pred             cHHHHHHHcCcHHHHHHHhCC
Confidence            999999999999999999963

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-26  Score=176.21  Aligned_cols=119  Identities=33%  Similarity=0.426  Sum_probs=110.0

Q ss_pred             CCCHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CC-CchHHHHHHhhCC
Q 016683          155 AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AG-GATPLHIAADIGS  232 (384)
Q Consensus       155 ~~~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~-g~t~L~~A~~~~~  232 (384)
                      ..++||+|+..|+.+++++|+++|++++.++..|.||+|.|+ .|+.+++++|+++|++++.. .. +.||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            348899999999999999999999999999999999999764 79999999999999999877 44 4579999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcC
Q 016683          233 TEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFP  274 (384)
Q Consensus       233 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  274 (384)
                      .+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.8e-25  Score=170.23  Aligned_cols=117  Identities=26%  Similarity=0.305  Sum_probs=61.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC--CHhHHHHHcCCH
Q 016683           91 ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQ  168 (384)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--~~l~~A~~~~~~  168 (384)
                      .++||+|+.+|+.++|++|+++|++++..+..|.||+|.|+ .|+.+++++|+++|++++..+..+  +|||+|+..|+.
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~   82 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL   82 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            34555555555555555555555555555555555555432 345555555555554444333222  355555555555


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 016683          169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI  208 (384)
Q Consensus       169 ~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  208 (384)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        83 ~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          83 DTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             HHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5555555555555555555555555555555555555554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4.2e-25  Score=195.95  Aligned_cols=179  Identities=26%  Similarity=0.337  Sum_probs=119.8

Q ss_pred             CCCCCcCC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC-------HHHHHHHHhCCCCCC
Q 016683           79 LKLDVDTQ-DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN-------IELLTYLLSKGAEVD  150 (384)
Q Consensus        79 ~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~~~~~~  150 (384)
                      .+.++|.. |..|+||||+||..|+.++|++|+++|++++.+|..|+||||.|+..++       .++++++....... 
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~-  173 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE-  173 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE-
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhc-
Confidence            36677765 8889999999999999999999999999999999999999999997664       24555554433222 


Q ss_pred             CCCCCCCHhHHHHHcCC----HH--------HHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHH-----HHHHHcCC
Q 016683          151 SESDAGTPLIWAAGHGQ----QE--------AVKVLLEHHANP-NAETEDNITPLLSAVAAGSLTCL-----DLLIQAGA  212 (384)
Q Consensus       151 ~~~~~~~~l~~A~~~~~----~~--------~~~~Ll~~~~~~-~~~~~~g~t~l~~A~~~~~~~~v-----~~Ll~~g~  212 (384)
                       ...+.||||+++..+.    ..        ++.++...+... ......+.++++.+........+     ..++... 
T Consensus       174 -d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  251 (301)
T d1sw6a_         174 -DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM-  251 (301)
T ss_dssp             -CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT-
T ss_pred             -ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC-
Confidence             2234599998776443    22        334555544332 22333444555554444333222     2333333 


Q ss_pred             Ccccc-CCCchHHHHHHhhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 016683          213 NANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA  261 (384)
Q Consensus       213 ~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  261 (384)
                       +|.. ..|+||||+|++.|+.++|++|+++|++++.+|..|.|||++|+
T Consensus       252 -in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 -LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             -TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             -ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence             3444 67999999999999999999999999999999999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=3.9e-26  Score=173.17  Aligned_cols=113  Identities=29%  Similarity=0.441  Sum_probs=104.8

Q ss_pred             CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHH
Q 016683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEI  235 (384)
Q Consensus       157 ~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~  235 (384)
                      |||++|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|++.|++++.. ..|+||||+|+..|+.++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            7999999999999999999999999999999999999999999999999999999999987 789999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhc
Q 016683          236 IKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF  273 (384)
Q Consensus       236 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  273 (384)
                      +++|+++|+|++.+|..|.||||+|.    .+.++.|+
T Consensus        84 v~~Ll~~Gad~~~~d~~G~t~l~~a~----~~~i~~LL  117 (118)
T d1myoa_          84 VKLLLSKGADKTVKGPDGLTALEATD----NQAIKALL  117 (118)
T ss_dssp             HHHHHTTCCCSSSSSSSTCCCCCTCS----STTTGGGG
T ss_pred             hhhhhcccccceeeCCCCCCHHHHHh----HHHHHHhc
Confidence            99999999999999999999999883    23455554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.3e-24  Score=166.22  Aligned_cols=118  Identities=26%  Similarity=0.383  Sum_probs=108.0

Q ss_pred             CHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHHhhCCHHH
Q 016683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEI  235 (384)
Q Consensus       157 ~~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~  235 (384)
                      ++|+.|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.|++++.. .+|+||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            4688999999999999999999999999999999999999999999999999999999877 789999999999999999


Q ss_pred             HHHHHHCCCCCCCCCC-CCCcHHHHH--HHcCCHHHHHhhcC
Q 016683          236 IKCLLKAGADPNVTDE-DGQKPIQVA--AARGNREAVEILFP  274 (384)
Q Consensus       236 v~~Ll~~ga~~~~~~~-~g~t~l~~A--~~~~~~~~v~~Ll~  274 (384)
                      +++|+++|++++..+. .|+||++++  +..|+.+++++|+.
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            9999999999998774 588887766  56788999999974

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.2e-23  Score=163.29  Aligned_cols=131  Identities=20%  Similarity=0.216  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCcc-chhhhcccCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCcCCCC
Q 016683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLS-KTVADIKDANKRGALHFAARE---GKTDVCKYLLEELKLDVDTQDE   88 (384)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~   88 (384)
                      .....|+.|++.+|+..+.+++..    |.++. +......+..|.||||+|+..   |+.+++++|++. |++++.+|.
T Consensus         5 ~~l~~L~~Av~~~dl~~l~~~~~~----g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~d~   79 (154)
T d1dcqa1           5 AKLHSLCEAVKTRDIFGLLQAYAD----GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTG   79 (154)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT----TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHc----CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhhhh
Confidence            455678999999999999999877    33322 122334567899999999985   688999999998 999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 016683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE  148 (384)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  148 (384)
                      .|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.+..
T Consensus        80 ~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          80 KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             hhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999999999987654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.4e-24  Score=164.10  Aligned_cols=119  Identities=26%  Similarity=0.325  Sum_probs=101.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 016683           58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE  137 (384)
Q Consensus        58 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  137 (384)
                      ++|+.||..|+.++|++|+++ |+++|.+|.+|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            578999999999999999987 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCC--CCCHhHHH--HHcCCHHHHHHHHhC
Q 016683          138 LLTYLLSKGAEVDSESD--AGTPLIWA--AGHGQQEAVKVLLEH  177 (384)
Q Consensus       138 ~~~~Ll~~~~~~~~~~~--~~~~l~~A--~~~~~~~~~~~Ll~~  177 (384)
                      ++++|+++|++++..+.  +.||++.+  +..|+.+++++|++.
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999988875542  33665543  566777888887753

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.4e-24  Score=192.61  Aligned_cols=170  Identities=20%  Similarity=0.273  Sum_probs=122.9

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCC-------HHHHHHHHHCCCCCCCCCCCCCc
Q 016683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGH-------TETAKYLFEHGANPTIPSNLGAT  125 (384)
Q Consensus        53 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~~~~~~g~t  125 (384)
                      |.+|+||||+||..|+.++|++|++. |++++.+|..|+||||.||..++       .+++++|..   .....|..|+|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g~t  179 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRT  179 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcccccCC
Confidence            88999999999999999999999987 99999999999999999998775       245555543   45667888999


Q ss_pred             HHHHHHHcCC----HH--------HHHHHHhCCCCCCCCC--CCCCHhHHHHHcCCHHHH-----HHHHhCCCCCCCCCC
Q 016683          126 ALHHSAGIGN----IE--------LLTYLLSKGAEVDSES--DAGTPLIWAAGHGQQEAV-----KVLLEHHANPNAETE  186 (384)
Q Consensus       126 ~L~~A~~~~~----~~--------~~~~Ll~~~~~~~~~~--~~~~~l~~A~~~~~~~~~-----~~Ll~~~~~~~~~~~  186 (384)
                      |||+++..+.    ..        ++.++.+.+.......  ...++++.+........+     ..++..  .+|.+|.
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~in~~D~  257 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN--MLNAQDS  257 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH--TTTCCCT
T ss_pred             HHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc--CccCCCC
Confidence            9998886544    22        3445555554432211  122444443333322222     222222  3678899


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCchHHHHHH
Q 016683          187 DNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAA  228 (384)
Q Consensus       187 ~g~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~  228 (384)
                      .|+||||+|++.|+.++|++|+++|++++.. ..|.|||++|+
T Consensus       258 ~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         258 NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            9999999999999999999999999999988 78999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=5.8e-25  Score=166.61  Aligned_cols=104  Identities=29%  Similarity=0.371  Sum_probs=74.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 016683           58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE  137 (384)
Q Consensus        58 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  137 (384)
                      |||++|+.+|+.++|++|++. |++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHh-hhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            577777777777777777776 7777777777777777777777777777777777777777777777777777777776


Q ss_pred             HHHHHHhCCCCCCCCCCCC-CHhHHH
Q 016683          138 LLTYLLSKGAEVDSESDAG-TPLIWA  162 (384)
Q Consensus       138 ~~~~Ll~~~~~~~~~~~~~-~~l~~A  162 (384)
                      ++++|+++|++++..+..| |||++|
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHH
Confidence            6666666666665544443 566554

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.3e-22  Score=160.33  Aligned_cols=120  Identities=24%  Similarity=0.282  Sum_probs=101.2

Q ss_pred             hHHHHHcCCHHHHHHHHhCCCCCCCC------CCCCCCHHHHHHHc---CCHHHHHHHHHcCCCcccc-CCCchHHHHHH
Q 016683          159 LIWAAGHGQQEAVKVLLEHHANPNAE------TEDNITPLLSAVAA---GSLTCLDLLIQAGANANIV-AGGATPLHIAA  228 (384)
Q Consensus       159 l~~A~~~~~~~~~~~Ll~~~~~~~~~------~~~g~t~l~~A~~~---~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~  228 (384)
                      |..|+..++...+..++..|.+++..      +..|.||||+|+..   ++.+++++|+++|++++.. ..|+||||+|+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccc
Confidence            44566667776666666666665433      56789999999974   6789999999999999887 77999999999


Q ss_pred             hhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 016683          229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (384)
Q Consensus       229 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (384)
                      ..|+.+++++|+++|++++.+|..|+||||+|+++|+.+++++|++.+..
T Consensus        90 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          90 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999876543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.19  Score=35.03  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=31.5

Q ss_pred             HHHHHHHchhhHHhhhhHHHHHHHHHHHHHhccCCC
Q 016683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVLCH  368 (384)
Q Consensus       333 ~~~~~k~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  368 (384)
                      +.++++.+|+..++.++|.+|+..|++++..++...
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~   37 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH   37 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Confidence            457789999999999999999999999999984443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.04  E-value=0.43  Score=35.03  Aligned_cols=36  Identities=33%  Similarity=0.418  Sum_probs=32.4

Q ss_pred             HHHHHHHHchhhHHhhhhHHHHHHHHHHHHHhccCC
Q 016683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVLC  367 (384)
Q Consensus       332 ~~~~~~k~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  367 (384)
                      ++++.++.+|+..++.++|..|+..|.+++..+...
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~   43 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN   43 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh
Confidence            677889999999999999999999999999998543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.92  E-value=0.6  Score=32.85  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=30.6

Q ss_pred             HHHHHHHHchhhHHhhhhHHHHHHHHHHHHHhccC
Q 016683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQVCYSSVL  366 (384)
Q Consensus       332 ~~~~~~k~~~~~~~~~~~~~~a~~~~~~~~~~~~~  366 (384)
                      +++...|..|+..+..++|..|+..|++++..++-
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~   36 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT   36 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            35566788999999999999999999999999854

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=84.08  E-value=0.64  Score=33.90  Aligned_cols=35  Identities=23%  Similarity=0.240  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHchhhHHhhhhHHHHHHHHHHHHHhc
Q 016683          330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQVCYSS  364 (384)
Q Consensus       330 ~~~~~~~~k~~~~~~~~~~~~~~a~~~~~~~~~~~  364 (384)
                      .-.+...++..|++.|+.++|..|+..|++++..-
T Consensus        13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~   47 (153)
T d2fbna1          13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF   47 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            34455678899999999999999999999998644