Citrus Sinensis ID: 016699

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMAEVF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccEEccccHHHHHHHcHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEEEEccccccEEEEcccEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccEEEHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccccEEEccccEEEEEEEcccccEEEEEcccccccccHHEEEccccccccEEEcc
Coil and Loop (DISEMBL)
MEAIRKQATKLREQVARQQQAVFKqfggggyggsdnvvtdeaELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKlsedsrkygsdntctsgnTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISsslkpsqaIEVSKRQAkvretpgnpdlaLKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERqrieaaptaptpsvdtmppppayeevngiyasqthngstdAMGYFLGEvvhpyqaesdveltLSVGDYVVVRKVtnngwaegeckgkagwfpfgyiERRDRVLASKMAEVF
Flexible Loop (DISEMBL)
MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVegyivtgskqveigtklsedsrkygsdntctsgntlSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLvissslkpsqaievskrqakvretpgnpdlaLKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIeaaptaptpsvdtmPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTnngwaegeckgkagwfpfgyIERRDRVLASKMAEVF
Low Complexity Region (SEG)
MEAIRKQATKLREQVARQQQAVFKQFggggyggSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEaaaamaaVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAptpsvdtmppppAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMAEVF
Disordered region (IsUnstruct)
************************************************RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEI********************************************LKALGTQVAEPLRAMVLGAPL*********************************************************AEVKLHDLKSNMAILGKEAAAAMAAVE**QQRLTLQRLIAMVEAERTYHQRVLQILDQL***********************************GIYAS**HNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL********
Disordered Region (DISOPRED)
****************************************EAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS*********LSKAAL******************ALGTQVAEPLRAMVLGAPLDD************************************************************************************************************************************************************************GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR************
Disordered Region (DISEMBL)
****************RQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQ**************PGNPDLALKLDAAEVKLHDLKSNMAILGKE*************RLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIE**********DTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMAEVF
Disordered Region (DISPRO)
*EAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPS***EV**********PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS*******************************************MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMA**F
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPxxxxxxxxxxxxxxxxxxxxxLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKxxxxxxxxxxxxxxxxxxxxxAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMAEVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
Q99963	347	Endophilin-A3 OS=Homo sap	yes	no	0.330	0.365	0.257	1e-07
Q2KJB5	505	Nostrin OS=Bos taurus GN=	yes	no	0.169	0.128	0.424	8e-07
Q8AXV0	367	Endophilin-A2 OS=Gallus g	yes	no	0.335	0.351	0.24	1e-06
O35180	347	Endophilin-A3 OS=Rattus n	yes	no	0.325	0.360	0.246	5e-06
O35964	368	Endophilin-A2 OS=Rattus n	no	no	0.330	0.345	0.222	6e-06
Q99961	368	Endophilin-A2 OS=Homo sap	no	no	0.330	0.345	0.254	7e-06
Q99962	352	Endophilin-A1 OS=Homo sap	no	no	0.330	0.360	0.240	1e-05
Q4R729	692	SH3 domain-containing pro	N/A	no	0.148	0.082	0.417	1e-05
Q2KJA1	368	Endophilin-A2 OS=Bos taur	no	no	0.325	0.339	0.264	1e-05
Q62421	347	Endophilin-A3 OS=Mus musc	yes	no	0.325	0.360	0.253	1e-05

>sp|Q99963|SH3G3_HUMAN Endophilin-A3 OS=Homo sapiens GN=SH3GL3 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVN 300
           + +L   +EA   YH++  +IL +L+ ++   + RI AA + P       P   +  E+N
Sbjct: 212 VSQLAVFIEAALDYHRQSTEILQELQSKL---QMRISAASSVPRREYKPRPVKRSSSELN 268

Query: 301 GIYASQT--HNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK 358
           G+  +      GS   M       ++ ++ E+  EL    GD + +    +  W EG   
Sbjct: 269 GVSTTSVVKTTGSNIPMDQPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIH 328

Query: 359 GKAGWFPFGYIE 370
           G++G+FP  Y+E
Sbjct: 329 GESGFFPINYVE 340

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.
Homo sapiens (taxid: 9606)

>sp|Q2KJB5|NOSTN_BOVIN Nostrin OS=Bos taurus GN=NOSTRIN PE=1 SV=1

 Score = 55.1 bits (131), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 305 SQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWF 364
           S T +G T  +G  L + ++P+QA  D EL L  GD V + K  + GW  G  KGK G F
Sbjct: 428 SSTASGVTQ-LGNGLCKALYPFQARQDDELDLEKGDIVTIHKKKDEGWWFGSLKGKKGHF 486

Query: 365 PFGYIE 370
           P  Y+E
Sbjct: 487 PAAYVE 492

Multivalent adapter protein which may decrease NOS3 activity by inducing its translocation away from the plasma membrane.

Bos taurus (taxid: 9913)

>sp|Q8AXV0|SH3G1_CHICK Endophilin-A2 OS=Gallus gallus GN=SH3GL1 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 21/150 (14%)

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEM------LSERQRIEAAPTAPTPSVD------ 288
           + +L A+V+A+  YH++ +QILD+L  ++       S R R E  P  P  + D      
Sbjct: 212 VSQLSALVDAQLDYHRQAVQILDELAEKLKRRMREASSRPRREYKP-KPRETYDFGESDQ 270

Query: 289 -----TMPPPPAYEEVNGIYASQTHNGSTDAMGYF---LGEVVHPYQAESDVELTLSVGD 340
                +  P P     +   + +    S  ++ +      + ++ ++ E+D EL    GD
Sbjct: 271 SNGGFSCTPTPKVSASSSFRSDKPFRTSVRSIPHLDQPCCKALYDFEPENDGELGFKEGD 330

Query: 341 YVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            + +    +  W EG   G++G+FP  Y+E
Sbjct: 331 IITLTNQIDENWYEGMINGQSGFFPLNYVE 360

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.

Gallus gallus (taxid: 9031)

>sp|O35180|SH3G3_RAT Endophilin-A3 OS=Rattus norvegicus GN=Sh3gl3 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPP--PAYEE 298
           + +L   VEA   YH++  +IL +L+ ++      +  A  +  P  D MP P   +   
Sbjct: 212 VSQLAVFVEAALDYHRQSTEILQELQNKL-----ELRIALASQVPRRDYMPKPVNTSSTN 266

Query: 299 VNGIYASQTH--NGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE 356
            NG+  S +    G+           ++ ++ E++ EL    GD + +    +  W EG 
Sbjct: 267 ANGVEPSSSSKLTGTDIPSDQPCCRGLYDFEPENEGELGFKEGDIITLTNQIDENWYEGM 326

Query: 357 CKGKAGWFPFGYIE 370
            +G++G+FP  Y+E
Sbjct: 327 LRGESGFFPINYVE 340

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.

Rattus norvegicus (taxid: 10116)

>sp|O35964|SH3G1_RAT Endophilin-A2 OS=Rattus norvegicus GN=Sh3gl1 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 26/153 (16%)

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPP----AY 296
           + +L A+V+A+  YH++ +QIL++L  ++   ++R+  A + P       P  P      
Sbjct: 212 VSQLSALVDAQLDYHRQAVQILEELADKL---KRRVREASSRPRREFKPRPQEPFELGEL 268

Query: 297 EEVNGIYASQTHNGSTDAMGYFLGE-------------------VVHPYQAESDVELTLS 337
           E+ NG +   +    T +  +  G+                    ++ ++ E+D EL   
Sbjct: 269 EQPNGGFPCASAPKITASSSFRSGDKPTRTPSKSMPPLDQPSCKALYDFEPENDGELGFR 328

Query: 338 VGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            GD + +    +  W EG   G++G+FP  Y++
Sbjct: 329 EGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQ 361

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.

Rattus norvegicus (taxid: 10116)

>sp|Q99961|SH3G1_HUMAN Endophilin-A2 OS=Homo sapiens GN=SH3GL1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 26/153 (16%)

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPP----AY 296
           + +L A+V+A+  YH++ +QILD+L  ++   ++R+  A + P       P  P      
Sbjct: 212 VSQLSALVDAQLDYHRQAVQILDELAEKL---KRRMREASSRPKREYKPKPREPFDLGEP 268

Query: 297 EEVNG---------IYAS----------QTHNGSTDAMGYFLGEVVHPYQAESDVELTLS 337
           E+ NG         I AS          +T + S   +     + ++ ++ E+D EL   
Sbjct: 269 EQSNGGFPCTTAPKIAASSSFRSSDKPIRTPSRSMPPLDQPSCKALYDFEPENDGELGFH 328

Query: 338 VGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            GD + +    +  W EG   G++G+FP  Y+E
Sbjct: 329 EGDVITLTNQIDENWYEGMLDGQSGFFPLSYVE 361

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.

Homo sapiens (taxid: 9606)

>sp|Q99962|SH3G2_HUMAN Endophilin-A1 OS=Homo sapiens GN=SH3GL2 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 10/137 (7%)

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPT---APTPSVDTMPPPPAYE 297
           + +L A+V+A+  YH++ +QIL Q+   +    ++  + P     P P +    P     
Sbjct: 212 VSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQASSQPRREYQPKPRMSLEFPTGDST 271

Query: 298 EVNGIYASQTHNGSTDAMGYFLGE----VVHPYQAESDVELTLSVGDYVVVRKVTNNGWA 353
           + NG     +H G+    G  + +     ++ ++ E++ EL    GD + +    +  W 
Sbjct: 272 QPNG---GLSHTGTPKPSGVQMDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWY 328

Query: 354 EGECKGKAGWFPFGYIE 370
           EG   G +G+FP  Y+E
Sbjct: 329 EGMLHGHSGFFPINYVE 345

Implicated in synaptic vesicle endocytosis. May recruit other proteins to membranes with high curvature.

Homo sapiens (taxid: 9606)

>sp|Q4R729|SH321_MACFA SH3 domain-containing protein 21 OS=Macaca fascicularis GN=SH3D21 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 10/67 (14%)

Query: 313 DAMGYFLGEVVHP--------YQAESDVELTLSVGDYV-VVRKVT-NNGWAEGECKGKAG 362
           D+   +L  V HP        YQ E+  ELTL  GD V V+ K T + GW EGEC+G+ G
Sbjct: 55  DSPPDYLQTVSHPEAYRVLFDYQPEAPDELTLRRGDVVKVLSKTTEDKGWWEGECQGRRG 114

Query: 363 WFPFGYI 369
            FP  ++
Sbjct: 115 VFPDNFV 121

Macaca fascicularis (taxid: 9541)

>sp|Q2KJA1|SH3G1_BOVIN Endophilin-A2 OS=Bos taurus GN=SH3GL1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 30/155 (19%)

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEM------LSERQRIEAAPTAPTPSVDTMPPPP 294
           + +L A+V+A+  YH++ +QILD+L  ++       S R + E  P  P   +D   P  
Sbjct: 212 VSQLSALVDAQLDYHRQAVQILDELADKLKRRMREASSRPKREYKPK-PRELLDLGEP-- 268

Query: 295 AYEEVNG---------IYAS----------QTHNGSTDAMGYFLGEVVHPYQAESDVELT 335
             E+ NG         I AS          +T + S   +     + ++ ++ E+D EL 
Sbjct: 269 --EQSNGGFPCAAAPKITASSSFRSSDKPVRTPSRSMPPLDQPSCKALYDFEPENDGELG 326

Query: 336 LSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
              GD + +    +  W EG   G++G+FP  Y+E
Sbjct: 327 FHEGDIITLTNQIDENWYEGMLDGQSGFFPLSYVE 361

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.

Bos taurus (taxid: 9913)

>sp|Q62421|SH3G3_MOUSE Endophilin-A3 OS=Mus musculus GN=Sh3gl3 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPP--AYEE 298
           + +L   VEA   YH++  +IL +L+ ++     RI  A  +  P  + MP P   +  +
Sbjct: 212 VSQLAVFVEAALDYHRQSTEILQELQSKL---ELRISLA--SKVPKREFMPKPVNMSSTD 266

Query: 299 VNGIYASQTHN--GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE 356
            NG+  S +    G+           ++ ++ E++ EL    GD + +    +  W EG 
Sbjct: 267 ANGVGPSSSSKTPGTDTPADQPCCRGLYDFEPENEGELGFKEGDIITLTNQIDENWYEGM 326

Query: 357 CKGKAGWFPFGYIE 370
            +G++G+FP  Y+E
Sbjct: 327 LRGESGFFPINYVE 340

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
255543841	371	clathrin binding protein, putative [Rici	0.963	0.997	0.851	0.0
449464848	375	PREDICTED: uncharacterized protein LOC10	0.971	0.994	0.844	0.0
357467415	371	Neutrophil cytosol factor [Medicago trun	0.963	0.997	0.833	0.0
224080426	372	predicted protein [Populus trichocarpa]	0.963	0.994	0.836	0.0
356508236	371	PREDICTED: uncharacterized protein LOC10	0.963	0.997	0.838	1e-180
224103333	371	predicted protein [Populus trichocarpa]	0.963	0.997	0.851	1e-179
363808378	365	uncharacterized protein LOC100783004 [Gl	0.947	0.997	0.841	1e-177
225458099	368	PREDICTED: uncharacterized protein LOC10	0.955	0.997	0.778	1e-173
225427740	371	PREDICTED: uncharacterized protein LOC10	0.966	1.0	0.817	1e-172
357473515	372	Rho guanine nucleotide exchange factor [	0.963	0.994	0.823	1e-171

>gi|255543841|ref|XP_002512983.1| clathrin binding protein, putative [Ricinus communis] gi|223547994|gb|EEF49486.1| clathrin binding protein, putative [Ricinus communis]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/385 (85%), Positives = 354/385 (91%), Gaps = 15/385 (3%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATKLREQVARQQQAV KQFG  GYGG+D V+TDEAELHQHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQATKLREQVARQQQAVLKQFGASGYGGADGVITDEAELHQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEGYIVTG+KQVEIGTKLSED RKYG++NTCTSGNTLSKAAL+Y RARAQ
Sbjct: 61  KHFQRDIVRGVEGYIVTGAKQVEIGTKLSEDCRKYGAENTCTSGNTLSKAALNYERARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQ 180
           MEKERGNLLKALGTQVAEPLRAMV+G PL+DARHLAQRYDRMRQEAEA           Q
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGTPLEDARHLAQRYDRMRQEAEA-----------Q 169

Query: 181 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240
           AIEVSKRQAKVRE PG+P+LA+KL+AAE KL DLKSNMA+LGKEAAAAMAAVE+QQQRLT
Sbjct: 170 AIEVSKRQAKVREMPGSPELAMKLEAAESKLQDLKSNMAVLGKEAAAAMAAVEAQQQRLT 229

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSV-DTMPPPPAYEEV 299
           LQRLIAMVEAER YHQRVLQILDQLE EM+SERQRIEA    P PSV ++MPPPP+YEEV
Sbjct: 230 LQRLIAMVEAERAYHQRVLQILDQLESEMISERQRIEA---PPPPSVENSMPPPPSYEEV 286

Query: 300 NGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG 359
           NG+YASQ+HNGSTD MGYFLGEV+H YQAES+VELTLSVGDYVVVRKVTNNGWAEGECKG
Sbjct: 287 NGVYASQSHNGSTDGMGYFLGEVIHSYQAESNVELTLSVGDYVVVRKVTNNGWAEGECKG 346

Query: 360 KAGWFPFGYIERRDRVLASKMAEVF 384
           KAGWFPFGYIERR+RVLASK+AEVF
Sbjct: 347 KAGWFPFGYIERRERVLASKIAEVF 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464848|ref|XP_004150141.1| PREDICTED: uncharacterized protein LOC101205534 [Cucumis sativus] gi|449520605|ref|XP_004167324.1| PREDICTED: uncharacterized protein LOC101227373 [Cucumis sativus]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/386 (84%), Positives = 355/386 (91%), Gaps = 13/386 (3%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           M+AIRKQATKLREQVARQQQAV KQFG GGYGGSDN++TDEAELHQHQ+LE+LYISTRAG
Sbjct: 1   MDAIRKQATKLREQVARQQQAVLKQFGAGGYGGSDNIITDEAELHQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYG++NTCTSG+TLSKAAL+YGRARAQ
Sbjct: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGSTLSKAALNYGRARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQ 180
           MEKERGN+LKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEA           Q
Sbjct: 121 MEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEA-----------Q 169

Query: 181 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240
           AIEV KRQA+VRE PGN ++ +KL+AAE KLHDLKSNMA +GKEAAAAMAAVE+QQQRLT
Sbjct: 170 AIEVFKRQARVREAPGNAEITVKLEAAEAKLHDLKSNMATMGKEAAAAMAAVEAQQQRLT 229

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEA-APTAPTPSVD-TMPPPPAYEE 298
           LQRLIAMVEAER YHQRVLQILDQLEGEM+ ERQRIEA     P PS+D +MPPPP+YEE
Sbjct: 230 LQRLIAMVEAERAYHQRVLQILDQLEGEMILERQRIEAPPTPPPGPSIDNSMPPPPSYEE 289

Query: 299 VNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK 358
           VNG++ASQ HNGSTDAMGYFLGEV+HPY AESDVEL LSVGDYVVVRKV+NNGWAEGECK
Sbjct: 290 VNGVFASQAHNGSTDAMGYFLGEVMHPYLAESDVELNLSVGDYVVVRKVSNNGWAEGECK 349

Query: 359 GKAGWFPFGYIERRDRVLASKMAEVF 384
           GKAGWFPFGYIERR+RVLASK+AEVF
Sbjct: 350 GKAGWFPFGYIERRERVLASKVAEVF 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467415|ref|XP_003603992.1| Neutrophil cytosol factor [Medicago truncatula] gi|355493040|gb|AES74243.1| Neutrophil cytosol factor [Medicago truncatula]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/385 (83%), Positives = 349/385 (90%), Gaps = 15/385 (3%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KLREQVARQQQAV KQFG GGYGGSDN+VTDE EL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS+NTCTSG+TLS+AAL+Y  ARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTSGSTLSRAALNYAHARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQ 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQ+AEA           Q
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQDAEA-----------Q 169

Query: 181 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240
           AIEVSKRQAKVRETPGN +  +KL+AAE KL DLKSNMAILGKEAAAAM AVE+QQQRLT
Sbjct: 170 AIEVSKRQAKVRETPGNAENTMKLEAAETKLQDLKSNMAILGKEAAAAMTAVEAQQQRLT 229

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEV 299
           LQRLIAMVEAER YHQRVLQILD LEGEM+SERQRIEA    PTPSVD +MPPPP YEEV
Sbjct: 230 LQRLIAMVEAERAYHQRVLQILDHLEGEMISERQRIEA---PPTPSVDNSMPPPPPYEEV 286

Query: 300 NGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG 359
           NG+YASQ HNG TD+MGYFLGEV+ PY AES+VEL LSVGDY+V+RKV+NNGWAEGECKG
Sbjct: 287 NGVYASQEHNGITDSMGYFLGEVLFPYHAESEVELNLSVGDYIVIRKVSNNGWAEGECKG 346

Query: 360 KAGWFPFGYIERRDRVLASKMAEVF 384
           KAGWFPFGY+ERRD+VLASK+AEVF
Sbjct: 347 KAGWFPFGYVERRDQVLASKVAEVF 371

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080426|ref|XP_002306133.1| predicted protein [Populus trichocarpa] gi|222849097|gb|EEE86644.1| predicted protein [Populus trichocarpa]

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/386 (83%), Positives = 352/386 (91%), Gaps = 16/386 (4%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATKLREQVA+QQQAV KQFG GGYGGSD V+TDEAELHQHQ+LERLYISTRAG
Sbjct: 1   MEAIRKQATKLREQVAKQQQAVLKQFGAGGYGGSDTVITDEAELHQHQKLERLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRD+VRGVEGYIVTGSKQVEIGT+ SEDSRKYG++NTCTSGNTLSKAA++Y  ARAQ
Sbjct: 61  KHFQRDVVRGVEGYIVTGSKQVEIGTRFSEDSRKYGAENTCTSGNTLSKAAVNYANARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQ 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEA           Q
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEA-----------Q 169

Query: 181 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240
           AIEV+KRQAKVRE PGN +LA+KL++AE KL DLKSNMAILGKEAAAAMAAVE+QQQRLT
Sbjct: 170 AIEVAKRQAKVREMPGNSELAMKLESAETKLQDLKSNMAILGKEAAAAMAAVEAQQQRLT 229

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEV 299
           LQRLIAMVEAER YHQ VLQILDQLEGEM SERQRIEA    PTPS + +MPPPP+YEEV
Sbjct: 230 LQRLIAMVEAERAYHQTVLQILDQLEGEMASERQRIEA---PPTPSAESSMPPPPSYEEV 286

Query: 300 NGIYASQT-HNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK 358
           NG+YASQ  HNG+TD+MGYFLGEV+H YQ +SDVELTLS+GD+VVVRKVTNNGWAEGECK
Sbjct: 287 NGVYASQAHHNGTTDSMGYFLGEVMHSYQGQSDVELTLSIGDFVVVRKVTNNGWAEGECK 346

Query: 359 GKAGWFPFGYIERRDRVLASKMAEVF 384
           GKAGWFP+GYIERRDRVLASK+AEVF
Sbjct: 347 GKAGWFPYGYIERRDRVLASKIAEVF 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508236|ref|XP_003522865.1| PREDICTED: uncharacterized protein LOC100810746 isoform 1 [Glycine max]

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 323/385 (83%), Positives = 351/385 (91%), Gaps = 15/385 (3%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KLREQVARQQQAV KQFG GGYGGSDN+VTDE EL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIVTGSKQVEIGTKLSED+RKYG+DNTCTSG+TLS+AAL+Y  ARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDNRKYGADNTCTSGSTLSRAALNYAHARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQ 180
           MEKERG+LLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEA           Q
Sbjct: 121 MEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEA-----------Q 169

Query: 181 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240
           AIEVSKRQAKVRETPGN + A+KL+AAE KL DLK+NMAILGKEAAAAMAAVE+QQQRLT
Sbjct: 170 AIEVSKRQAKVRETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLT 229

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEV 299
           LQRLIAMVEAE  YHQRVLQILDQLEGEM+SERQRIEA    PTPSVD +M PPP+YEEV
Sbjct: 230 LQRLIAMVEAEHAYHQRVLQILDQLEGEMISERQRIEA---PPTPSVDSSMTPPPSYEEV 286

Query: 300 NGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG 359
           NG+ ASQ HNGSTD+MGYFLGEV+ PY AES+VEL LSVGDY+VVRKVTNNGWAEGECKG
Sbjct: 287 NGVCASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTNNGWAEGECKG 346

Query: 360 KAGWFPFGYIERRDRVLASKMAEVF 384
           KAGWFPFGYIERR+RVLASK+AEVF
Sbjct: 347 KAGWFPFGYIERRERVLASKVAEVF 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103333|ref|XP_002313015.1| predicted protein [Populus trichocarpa] gi|222849423|gb|EEE86970.1| predicted protein [Populus trichocarpa]

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 328/385 (85%), Positives = 356/385 (92%), Gaps = 15/385 (3%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATKLREQVA+QQQAV KQFGGGGYGGSD +VTDEAELHQHQ+LERLYISTRAG
Sbjct: 1   MEAIRKQATKLREQVAKQQQAVLKQFGGGGYGGSDTLVTDEAELHQHQKLERLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEGYIVTGSKQVEIGTK SEDSRKYG++NTCTSGNTLSKAA++YGRARAQ
Sbjct: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKFSEDSRKYGAENTCTSGNTLSKAAVNYGRARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQ 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEA           Q
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEA-----------Q 169

Query: 181 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240
           AIEVSKRQAKVRE PG+P+LA+KL++AE KL DLKSNM+ILGKEAAAAMAAVE+QQQRLT
Sbjct: 170 AIEVSKRQAKVREMPGSPELAMKLESAETKLQDLKSNMSILGKEAAAAMAAVEAQQQRLT 229

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSV-DTMPPPPAYEEV 299
           LQRLIAMVEAER YHQRVLQILDQLEGEM SERQRIEA    PTPS  ++MPPPP+YEEV
Sbjct: 230 LQRLIAMVEAERAYHQRVLQILDQLEGEMTSERQRIEA---PPTPSAENSMPPPPSYEEV 286

Query: 300 NGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG 359
           NG+YASQ HNG+TD++ YFLGEV+H YQ +SDVELTLS+GDYVVVRKVTNNGWAEGECKG
Sbjct: 287 NGMYASQAHNGTTDSISYFLGEVMHSYQGQSDVELTLSIGDYVVVRKVTNNGWAEGECKG 346

Query: 360 KAGWFPFGYIERRDRVLASKMAEVF 384
           KAGWFP+GYIERRDRVLASK+AEVF
Sbjct: 347 KAGWFPYGYIERRDRVLASKIAEVF 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808378|ref|NP_001242513.1| uncharacterized protein LOC100783004 [Glycine max] gi|255635032|gb|ACU17874.1| unknown [Glycine max]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 319/379 (84%), Positives = 346/379 (91%), Gaps = 15/379 (3%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KL EQVARQQQAV KQFG GGYGGSDN+VTDE EL QHQ+LE LYISTRAG
Sbjct: 1   MEAIRKQASKLLEQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEELYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYG+DNTCTSG+TLS+AAL+Y RARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGADNTCTSGSTLSRAALNYARARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQ 180
           MEKERG+LLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEA           +
Sbjct: 121 MEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEA-----------R 169

Query: 181 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240
           AIEVSKRQAKVRETPGN + A+KL+AAE KL DLK+NMAILGKEAAAAMAAVE+QQQRLT
Sbjct: 170 AIEVSKRQAKVRETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLT 229

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEV 299
           LQRLIAMVEAER YHQRVLQILDQLEGEM+SERQRIEA    PTPSVD +M PPP+YEEV
Sbjct: 230 LQRLIAMVEAERAYHQRVLQILDQLEGEMISERQRIEA---PPTPSVDSSMTPPPSYEEV 286

Query: 300 NGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG 359
           NG+YASQ HNGSTD+MGYFLGEV+ PY AES+VEL LSVGDY+V+RKVTNNGWAEGECKG
Sbjct: 287 NGVYASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVIRKVTNNGWAEGECKG 346

Query: 360 KAGWFPFGYIERRDRVLAS 378
           KAGWFPFGYIERR+RVLAS
Sbjct: 347 KAGWFPFGYIERRERVLAS 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458099|ref|XP_002279562.1| PREDICTED: uncharacterized protein LOC100264255 isoform 1 [Vitis vinifera] gi|302142592|emb|CBI19795.3| unnamed protein product [Vitis vinifera]

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/380 (77%), Positives = 337/380 (88%), Gaps = 13/380 (3%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATK+ +QVA+QQQAV KQF GGGYGG DNV+TDE+EL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQATKIIDQVAKQQQAVLKQFSGGGYGGPDNVLTDESELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEG+IVTGSKQVEIGTKLSEDSRKYG +NTCTSG+TLSKAALS+ RARAQ
Sbjct: 61  KHFQRDIVRGVEGFIVTGSKQVEIGTKLSEDSRKYGVENTCTSGSTLSKAALSFARARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQ 180
           MEKERGNLLKALGT+V EPLRAMV+GAPL+DARHLAQRY+RMR EAEA           Q
Sbjct: 121 MEKERGNLLKALGTKVGEPLRAMVMGAPLEDARHLAQRYERMRMEAEA-----------Q 169

Query: 181 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240
           AIEVSKRQ K RE+ GNPD  LKL+AAE KLH+LKSN AILGKEA +AMAAVE QQQRLT
Sbjct: 170 AIEVSKRQIKARESMGNPDNVLKLEAAEAKLHELKSNTAILGKEAVSAMAAVEGQQQRLT 229

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVN 300
           LQR+IAMVE+ER+YHQ VLQILDQLE EML+ERQRIEA P+ PT + + MPPPP+Y+EVN
Sbjct: 230 LQRIIAMVESERSYHQSVLQILDQLESEMLAERQRIEAFPS-PTAN-NAMPPPPSYDEVN 287

Query: 301 GIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGK 360
            ++ASQT+  ST +MGYFLGEV+H +QAESDVEL LSVGD+VV+RKV+N+GWAEGEC+GK
Sbjct: 288 NVFASQTYGESTGSMGYFLGEVMHSFQAESDVELNLSVGDHVVIRKVSNSGWAEGECRGK 347

Query: 361 AGWFPFGYIERRDRVLASKM 380
           AGWFP GYIERR+RVLASK+
Sbjct: 348 AGWFPVGYIERRERVLASKL 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427740|ref|XP_002266234.1| PREDICTED: uncharacterized protein LOC100260580 isoform 1 [Vitis vinifera] gi|147864615|emb|CAN81938.1| hypothetical protein VITISV_028002 [Vitis vinifera] gi|297744745|emb|CBI38007.3| unnamed protein product [Vitis vinifera]

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 314/384 (81%), Positives = 347/384 (90%), Gaps = 13/384 (3%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+K REQVA+QQQAV KQFGGGGYGGSDNV+TDEAEL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQASKFREQVAKQQQAVLKQFGGGGYGGSDNVITDEAELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEG+IVTGSKQVEIGTKLSED RKYG +NTCTSGNTLSKAAL+YGRARAQ
Sbjct: 61  KHFQRDIVRGVEGFIVTGSKQVEIGTKLSEDCRKYGVENTCTSGNTLSKAALNYGRARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQ 180
           +EKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRY+RMRQEAEA           Q
Sbjct: 121 IEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYERMRQEAEA-----------Q 169

Query: 181 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240
           AIEVSKRQAK+RE  GN D  LKL+AAE KLHDLKSNMAILGKEAAAAMAAVE+QQQRLT
Sbjct: 170 AIEVSKRQAKMREATGNADNTLKLEAAEAKLHDLKSNMAILGKEAAAAMAAVEAQQQRLT 229

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVN 300
           LQRLIA VE+ER YHQRVLQIL+ LE EM+SERQRIEA P+ P    +  PPPP+YEEVN
Sbjct: 230 LQRLIATVESERAYHQRVLQILELLETEMISERQRIEAPPSPPVE--NNTPPPPSYEEVN 287

Query: 301 GIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGK 360
           G++ASQTHNGS+D++ YFLGEV+H YQAESDVEL LS+GD+VVVRKV+NNGWAEGECKGK
Sbjct: 288 GVFASQTHNGSSDSISYFLGEVMHSYQAESDVELNLSIGDFVVVRKVSNNGWAEGECKGK 347

Query: 361 AGWFPFGYIERRDRVLASKMAEVF 384
           AGWFPFGY+E+R+RVLASKMAEVF
Sbjct: 348 AGWFPFGYVEKRERVLASKMAEVF 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473515|ref|XP_003607042.1| Rho guanine nucleotide exchange factor [Medicago truncatula] gi|355508097|gb|AES89239.1| Rho guanine nucleotide exchange factor [Medicago truncatula]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 318/386 (82%), Positives = 351/386 (90%), Gaps = 16/386 (4%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           M+AIRKQA+KLREQVARQQQAV KQFGGGGYGGSDN+VTDE ELH HQ+LE+LYISTRAG
Sbjct: 1   MDAIRKQASKLREQVARQQQAVLKQFGGGGYGGSDNMVTDERELHLHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRD+VRGVEGYIVTGSKQVEIGTKLSEDSRKYG++NTCTSG TL +AALSY RARAQ
Sbjct: 61  KHYQRDVVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGGTLCRAALSYSRARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQ 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQ+AEA           Q
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVVGAPLEDARHLAQRYDRMRQDAEA-----------Q 169

Query: 181 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240
           AIEVSKRQAKVRE PGN ++A+KL+AAE KL DLKSNM ILG+EAAAA+AAVE+QQQRLT
Sbjct: 170 AIEVSKRQAKVRELPGNSEIAMKLEAAEAKLQDLKSNMNILGREAAAALAAVEAQQQRLT 229

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEV 299
           LQRLIAMVEAER+YHQ VLQILDQLEGEM+SERQRIEA    PTPS+D +MPPPP YEEV
Sbjct: 230 LQRLIAMVEAERSYHQVVLQILDQLEGEMISERQRIEA---PPTPSMDNSMPPPPPYEEV 286

Query: 300 NGIYASQ-THNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK 358
           NG+YASQ THNGSTD+MGYFLGEV+ PY A S+VEL LSVGDY+V+RKVTNNGWAEGECK
Sbjct: 287 NGVYASQTTHNGSTDSMGYFLGEVLFPYSAVSEVELNLSVGDYIVIRKVTNNGWAEGECK 346

Query: 359 GKAGWFPFGYIERRDRVLASKMAEVF 384
           G+AGWFPF YIERR+RVLASK+AEVF
Sbjct: 347 GRAGWFPFSYIERRERVLASKVAEVF 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2139554	368	AT4G34660 "AT4G34660" [Arabido	0.958	1.0	0.723	1.1e-142
TAIR|locus:2206174	439	AT1G31440 [Arabidopsis thalian	0.687	0.601	0.498	6.5e-83
TAIR|locus:2117666	351	AT4G18060 "AT4G18060" [Arabido	0.703	0.769	0.519	6.3e-69
TAIR|locus:2120257	169	AT4G39020 "AT4G39020" [Arabido	0.226	0.514	0.704	3.8e-30
UNIPROTKB|F1PG25	312	SH3GL3 "Uncharacterized protei	0.330	0.407	0.265	1.9e-06
UNIPROTKB|E1BY30	351	SH3GL1 "Endophilin-A2" [Gallus	0.330	0.361	0.276	3.5e-06
UNIPROTKB|E5RH58	135	SORBS3 "Vinexin" [Homo sapiens	0.117	0.333	0.466	1e-05
UNIPROTKB|E5RIA0	94	SORBS3 "Vinexin" [Homo sapiens	0.117	0.478	0.466	1e-05
FB|FBgn0023388	1097	Dap160 "Dynamin associated pro	0.135	0.047	0.385	1.6e-05
UNIPROTKB|F1MKH2	505	NOSTRIN "Nostrin" [Bos taurus	0.169	0.128	0.424	2.2e-05

TAIR|locus:2139554 AT4G34660 "AT4G34660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
 Identities = 278/384 (72%), Positives = 320/384 (83%)

Query:     1 MEAIRKQATKLREQVARQQQAVFKQFXXXXXXXSDNVVTDEAELHQHQRLERLYISTRAG 60
             M+AIRKQA++LREQVARQQQAVFKQF           + DEAEL+QHQ+LE+LYISTRA 
Sbjct:     1 MDAIRKQASRLREQVARQQQAVFKQFGGGGYGSG---LADEAELNQHQKLEKLYISTRAA 57

Query:    61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
             KH+QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS+NTCT+GN L++AAL+YGRARAQ
Sbjct:    58 KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTNGNVLTRAALNYGRARAQ 117

Query:   121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQ 180
             MEKERGN+LKALGTQVAEPLRAMVLGAPL+DARHLAQRYDRMRQEAEAQ           
Sbjct:   118 MEKERGNMLKALGTQVAEPLRAMVLGAPLEDARHLAQRYDRMRQEAEAQ----------- 166

Query:   181 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEXXXXXXXVESQQQRLT 240
             A EV++RQAK RE+ GNPD+ +KL++AE KLHDLKSNM ILGKE       VE QQQ+LT
Sbjct:   167 ATEVARRQAKARESQGNPDILMKLESAEAKLHDLKSNMTILGKEAASALASVEDQQQKLT 226

Query:   241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAXXXXXXXXXXXXAYEEVN 300
             L+RL++MVE+ER YHQRVLQILDQLEGEM+SERQRIEA  T             +YEE N
Sbjct:   227 LERLLSMVESERAYHQRVLQILDQLEGEMVSERQRIEAPSTPSSADSMPPPP--SYEEAN 284

Query:   301 GIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGK 360
             G++ASQ H+ STD+MGYFLGEV+ PY   +DVEL+LS G+YVVVRKVT +GWAEGECKGK
Sbjct:   285 GVFASQMHDTSTDSMGYFLGEVLFPYHGVTDVELSLSTGEYVVVRKVTGSGWAEGECKGK 344

Query:   361 AGWFPFGYIERRDRVLASKMAEVF 384
             AGWFP+GYIERR+RVLASK++EVF
Sbjct:   345 AGWFPYGYIERRERVLASKVSEVF 368

GO:0008150 "biological_process" evidence=ND

GO:0030276 "clathrin binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2206174 AT1G31440 [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
 Identities = 140/281 (49%), Positives = 184/281 (65%)

Query:     1 MEAIRKQATKLREQVARQQQAVFKQFXXXXXXXSDNVVTDEAELHQHQRLERLYISTRAG 60
             MEAIRKQA KLREQVARQQQAV K         +D VV DE ELH HQ+L+ LY ST+A 
Sbjct:     1 MEAIRKQAAKLREQVARQQQAVLKHLGHVN---ADAVVVDEEELHCHQKLQDLYSSTKAA 57

Query:    61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNT-LSKAALSYGRARA 119
             K  QR+IVRG+EG+I TG+K VEIG K +ED +KYG +N     NT LS+ A  +G +  
Sbjct:    58 KRLQRNIVRGLEGFIATGTKVVEIGLKFAEDFKKYGDENP--DANTPLSRVAHHFGTSYK 115

Query:   120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPS 179
              +E ER  LL  L  QV EP+R M+  APL+DARHL   YDR+RQE EAQ          
Sbjct:   116 SVEGERETLLGVLSEQVCEPIRTMIYSAPLEDARHLVNHYDRLRQEVEAQ---------- 165

Query:   180 QAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEXXXXXXXVESQQQRL 239
              A +V +R++K++E+  + +  +KL  +E +L +LKS+M  LGKE       V+ QQQ +
Sbjct:   166 -ATDVLRRRSKLKESDISEEAYIKLKNSESRLAELKSSMKTLGKEATKAMLEVDDQQQNV 224

Query:   240 TLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAP 280
             T QRL A+VEAER+YH+  L ILD+L  EM++E + I ++P
Sbjct:   225 TSQRLRALVEAERSYHRNALDILDKLHSEMIAEEEAIGSSP 265

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0012505 "endomembrane system" evidence=IDA

GO:0030276 "clathrin binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2117666 AT4G18060 "AT4G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 147/283 (51%), Positives = 192/283 (67%)

Query:     1 MEAIRKQATKLREQVARQQQAVFKQFXXXXXXXSDNVVTDEAELHQHQRLERLYISTRAG 60
             M+A R+QA+KLR+QVA+QQ AV KQF       SD +V DE E+ +H +L++LY STR+ 
Sbjct:     1 MDAFRRQASKLRDQVAKQQLAVIKQFSGTGYESSDVMVIDELEMQRHHQLDKLYRSTRSA 60

Query:    61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCT-SGNTLSKAALSYGRARA 119
             K FQRDIV+  E +   G + +E GTKLSED  +YG++N+     N L+KAA  YG AR 
Sbjct:    61 KEFQRDIVKAAEAFTTIGLRHIEAGTKLSEDCCRYGNENSQNIDENILAKAAAIYGDARK 120

Query:   120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPS 179
              ++KE+ +  K L +QV +PLRAMV G+PL+DARHLAQRY RMRQEAE           +
Sbjct:   121 HVDKEQEDFNKLLASQVLDPLRAMVAGSPLEDARHLAQRYSRMRQEAE-----------T 169

Query:   180 QAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEXXXXXXXVESQQQRL 239
              A EVS+RQA+VRE P  P+   KL  AE K+ +LK+NMA+LGKE       VESQQ RL
Sbjct:   170 HATEVSRRQARVREAP-IPENVAKLQLAEAKMQELKANMAVLGKEATAALAAVESQQHRL 228

Query:   240 TLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTA 282
             T QRL+AMVE E+ YH R+  IL  +E EM++E+Q  E+AP A
Sbjct:   229 TFQRLVAMVEGEKNYHLRIAAILSDIEAEMVTEKQHKESAPPA 271

GO:0030276 "clathrin binding" evidence=ISS

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2120257 AT4G39020 "AT4G39020" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 62/88 (70%), Positives = 75/88 (85%)

Query:   298 EVN-GIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE 356
             E N G+ ASQ HNG++DAMGYFLGEV+ PYQA+SD EL+LSVGDYVV+R+V ++ WAEGE
Sbjct:    82 EANDGVNASQMHNGTSDAMGYFLGEVMFPYQADSDFELSLSVGDYVVIREVVSSVWAEGE 141

Query:   357 CKGKAGWFPFGYIERRDRVLASKMAEVF 384
             CKG AGWF + YIERRDRV A+K+ EVF
Sbjct:   142 CKGNAGWFTYIYIERRDRVFATKVIEVF 169

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1PG25 SH3GL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 136 (52.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 35/132 (26%), Positives = 62/132 (46%)

Query:   241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAXXXXXXXXXXXXAYEEVN 300
             + +L   +EA   YH++  +IL +L+ ++   + RI AA +             +  E+N
Sbjct:   177 VSQLAVFIEAALDYHKQSTEILQELQSKL---QMRISAASSVPKREYKPRPIKRSPSELN 233

Query:   301 GIY--ASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK 358
             G+   AS    GS  AM       ++ ++ E+  EL    GD + +    +  W EG   
Sbjct:   234 GVSTTASAKTTGSNVAMDQPCCRGLYDFEPENQGELGFKEGDVITLTNQIDENWYEGMLH 293

Query:   359 GKAGWFPFGYIE 370
             G++G+FP  Y+E
Sbjct:   294 GESGFFPINYVE 305

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1BY30 SH3GL1 "Endophilin-A2" [Gallus gallus (taxid:9031)]

 Score = 130 (50.8 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
 Identities = 37/134 (27%), Positives = 65/134 (48%)

Query:   241 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAXXXXXXXXXXXXAY---E 297
             + +L A+V+A+  YH++ +QILD+L  E L  R R EA+                +   +
Sbjct:   214 VSQLSALVDAQLDYHRQAVQILDEL-AEKLKRRMR-EASSRPRREYKPKPRETYDFGESD 271

Query:   298 EVNGIYASQTHNGSTDA-MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE 356
             + NG + S T      A +     + ++ ++ E+D EL    GD + +    +  W EG 
Sbjct:   272 QSNGGF-SCTPTPKVSAHLDQPCCKALYDFEPENDGELGFKEGDIITLTNQIDENWYEGM 330

Query:   357 CKGKAGWFPFGYIE 370
               G++G+FP  Y+E
Sbjct:   331 INGQSGFFPLNYVE 344

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E5RH58 SORBS3 "Vinexin" [Homo sapiens (taxid:9606)]

 Score = 110 (43.8 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query:   326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             +QA+S  ELTL  GD V + K  +  W EGE  G+ G FP  Y+E
Sbjct:    49 FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 93

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0031589 "cell-substrate adhesion" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

UNIPROTKB|E5RIA0 SORBS3 "Vinexin" [Homo sapiens (taxid:9606)]

 Score = 110 (43.8 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query:   326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             +QA+S  ELTL  GD V + K  +  W EGE  G+ G FP  Y+E
Sbjct:    49 FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 93

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0031589 "cell-substrate adhesion" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

FB|FBgn0023388 Dap160 "Dynamin associated protein 160" [Drosophila melanogaster (taxid:7227)]

 Score = 120 (47.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
 Identities = 22/57 (38%), Positives = 37/57 (64%)

Query:   319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA-----GWFPFGYIE 370
             + +V+ PY+A S  +L+L+ G  +++RK T++GW EGE + K      GWFP  Y++
Sbjct:   945 IAQVIAPYEATSTEQLSLTRGQLIMIRKKTDSGWWEGELQAKGRRRQIGWFPATYVK 1001

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045179 "apical cortex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IMP

GO:0045860 "positive regulation of protein kinase activity" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1MKH2 NOSTRIN "Nostrin" [Bos taurus (taxid:9913)]

 Score = 130 (50.8 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 28/66 (42%), Positives = 37/66 (56%)

Query:   305 SQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWF 364
             S T +G T  +G  L + ++P+QA  D EL L  GD V + K  + GW  G  KGK G F
Sbjct:   428 SSTASGVTQ-LGNGLCKALYPFQARQDDELDLEKGDIVTIHKKKDEGWWFGSLKGKKGHF 486

Query:   365 PFGYIE 370
             P  Y+E
Sbjct:   487 PAAYVE 492

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
cd07607	209	cd07607, BAR_SH3P_plant, The Bin/Amphiphysin/Rvs (	1e-110
cd07307	194	cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain	4e-17
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	8e-16
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	2e-11
smart00326	56	smart00326, SH3, Src homology 3 domains	4e-11
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	7e-11
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	4e-10
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	3e-09
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	4e-09
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	4e-09
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	5e-09
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	9e-09
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	6e-08
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	7e-08
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	1e-07
cd11987	55	cd11987, SH3_Intersectin1_1, First Src homology 3	1e-07
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	3e-07
cd11982	52	cd11982, SH3_Shank1, Src homology 3 domain of SH3	3e-07
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	5e-07
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	6e-07
cd11759	57	cd11759, SH3_CRK_C, C-terminal Src Homology 3 doma	6e-07
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	6e-07
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	8e-07
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	8e-07
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	9e-07
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	1e-06
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	1e-06
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	1e-06
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	1e-06
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	2e-06
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	2e-06
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	2e-06
pfam00018	47	pfam00018, SH3_1, SH3 domain	2e-06
cd11791	59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	3e-06
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	4e-06
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	5e-06
cd11993	65	cd11993, SH3_Intersectin1_4, Fourth Src homology 3	5e-06
cd12021	53	cd12021, SH3_p47phox_1, First or N-terminal Src ho	6e-06
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	7e-06
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	7e-06
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	7e-06
cd11832	50	cd11832, SH3_Shank, Src homology 3 domain of SH3 a	7e-06
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	8e-06
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	8e-06
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	9e-06
cd11983	52	cd11983, SH3_Shank2, Src homology 3 domain of SH3	1e-05
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	1e-05
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	1e-05
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	2e-05
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	2e-05
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	2e-05
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	3e-05
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	3e-05
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	3e-05
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	5e-05
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	5e-05
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	6e-05
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	6e-05
cd11940	55	cd11940, SH3_ARHGEF5_19, Src homology 3 domain of	7e-05
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	8e-05
cd11780	55	cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Ho	8e-05
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	9e-05
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	1e-04
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	1e-04
cd11984	52	cd11984, SH3_Shank3, Src homology 3 domain of SH3	2e-04
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	2e-04
cd11939	55	cd11939, SH3_ephexin1, Src homology 3 domain of th	3e-04
cd11938	55	cd11938, SH3_ARHGEF16_26, Src homology 3 domain of	4e-04
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	5e-04
cd12051	56	cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of C	6e-04
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	7e-04
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	7e-04
cd11872	56	cd11872, SH3_DOCK_AB, Src Homology 3 domain of Cla	0.001
cd12047	53	cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 do	0.001
cd12076	54	cd12076, SH3_Tks4_2, Second Src homology 3 domain	0.001
cd11990	52	cd11990, SH3_Intersectin2_2, Second Src homology 3	0.001
cd11989	52	cd11989, SH3_Intersectin1_2, Second Src homology 3	0.001
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	0.001
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	0.001
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	0.001
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	0.002
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	0.002
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	0.002
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	0.002
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	0.003
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	0.003
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	0.003
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	0.003
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	0.004
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	0.004
cd12016	54	cd12016, SH3_Tks_2, Second Src homology 3 domain o	0.004
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	0.004

>gnl|CDD|153291 cd07607, BAR_SH3P_plant, The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins

 Score =  321 bits (824), Expect = e-110
 Identities = 144/221 (65%), Positives = 170/221 (76%), Gaps = 12/221 (5%)

Query: 48  QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTL 107
           Q+LERLY STRA KHFQRDIVRGVEG+I TGSKQ+EIGTKL+ED +KYGS+N   +   L
Sbjct: 1   QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENPSVNTA-L 59

Query: 108 SKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE 167
           S+A+L YG AR QMEKER NL + L  QVAEPLRAMV GAPL+DARHL QRYDR+RQE E
Sbjct: 60  SRASLHYGSARNQMEKERENLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVE 119

Query: 168 AQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAA 227
           AQ           A EV++R++K +E+ GNPD A KL +AE KL +LKS+M  LGKEA +
Sbjct: 120 AQ-----------AAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSMNTLGKEATS 168

Query: 228 AMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE 268
           AM AVE QQQ++TLQRL+AMVEAER YHQR   ILD+L  E
Sbjct: 169 AMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHDE 209

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 209

>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

 Score = 78.6 bits (194), Expect = 4e-17
 Identities = 43/206 (20%), Positives = 94/206 (45%), Gaps = 19/206 (9%)

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           +   + +++  +  + +  +      KLSE  ++ G +    S   L +A   +G+ + +
Sbjct: 6   EKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKE 65

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQ 180
           +E+ R  L + L  +V EPL+  +    L + +   ++ D+ R + +A            
Sbjct: 66  LEEFRDQLEQKLENKVIEPLKEYLKKD-LKEIKKRRKKLDKARLDYDAAR---------- 114

Query: 181 AIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240
                ++  K+R+   +     KL  AE +L + K     L +E    +  +E +++ L 
Sbjct: 115 -----EKLKKLRKKKKDSS---KLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELF 166

Query: 241 LQRLIAMVEAERTYHQRVLQILDQLE 266
           L  L++ +EA+  + + VL+IL+QL 
Sbjct: 167 LSLLLSFIEAQSEFFKEVLKILEQLL 192

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-BAR domain and is present in Pombe/Cdc15 homology (PCH) family proteins, which include Fes/Fes tyrosine kinases, PACSIN or syndapin, CIP4-like proteins, and srGAPs, among others. The Inverse (I)-BAR or IRSp53/MIM homology Domain (IMD) is found in multi-domain proteins, such as IRSp53 and MIM, that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The I-BAR domain induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. BAR domains that also serve as protein interaction domains include those of arfaptin and OPHN1-like proteins, among others, which bind to Rac and Rho GAP domains, respectively. Length = 194

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 70.8 bits (174), Expect = 8e-16
 Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 5/57 (8%)

Query: 319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGK-----AGWFPFGYIE 370
           + +V+ P+ A ++ +L+L+VG  V+VRK + +GW EGE + +      GWFP  Y++
Sbjct: 1   IAQVIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVK 57

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           L      ++  ++ EL+   GD + V +V   GW EG   GK GWFP  Y++
Sbjct: 1   LVRAKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 57.5 bits (140), Expect = 4e-11
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIE 370
                  ++ Y A+   EL+   GD + V + +++GW +G    GK G FP  Y+E
Sbjct: 1   EGPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 56.7 bits (138), Expect = 7e-11
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGY 368
            ++ Y+A+ D EL+   GD + V +  ++GW EGE   G+ G FP  Y
Sbjct: 4   ALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
           Y+A+ + EL+L  GD V+V + +++GW  GEC G+ GWFP  Y+  
Sbjct: 8   YEAQREDELSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYVTE 53

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 321 EVVHPYQAESDVELTLSVGDYV-VVRKVT-NNGWAEGECKGKAGWFPFGYIE 370
            V+  Y   +  EL L  GD + V+ K T + GW EGE  G+ G+FP  ++ 
Sbjct: 3   RVLFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVM 54

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIE 370
           + VH Y A+   ELTL  GD V V +   +GW EGE    G+ GWFP  Y E
Sbjct: 3   QCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYTE 54

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNN--GWAEGECKGKAGWFPFGYIER 371
            ++ ++A +  E++   GD + V +      GW  GE KGK GWFP  Y+E+
Sbjct: 4   ALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYVEK 55

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRK--VTNNGWAEGECKGKAGWFPFGYIE 370
           V+  Y+AE++ ELTL  GD V +      + GW +GE  GK G FP  ++E
Sbjct: 4   VLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVE 54

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 50.7 bits (122), Expect = 9e-09
 Identities = 21/44 (47%), Positives = 22/44 (50%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 365
           V   Y AE   ELTL VGD +   K    GW EG   GK G FP
Sbjct: 4   VEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLNGKRGMFP 47

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 48.3 bits (115), Expect = 6e-08
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 321 EVVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGY 368
           E ++ Y+A+ D E+++ VGD + V+R    +GW  GE  G  G FP  Y
Sbjct: 3   EALYDYEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEINGVKGLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 48.2 bits (116), Expect = 7e-08
 Identities = 20/45 (44%), Positives = 24/45 (53%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           Y A    EL+L  GD V V    +NGW EGE  G+ G  P  Y+E
Sbjct: 8   YVATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVE 52

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            ++ Y A+ D EL+   GD + V K  ++GW EG   G  G FP  Y+E
Sbjct: 4   ALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212920 cd11987, SH3_Intersectin1_1, First Src homology 3 domain (or SH3A) of Intersectin-1

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 323 VHPYQAESDVELTLSVGDYVVVR--KVTNNGWAEGECKGKAGWFPFGYIER 371
           ++P++A S  E+T+  GD V+V   +    GW  GE KGK GWFP  Y E+
Sbjct: 5   LYPFEARSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEK 55

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + Y A  + EL+L  GD + V +  ++GW  GE  GK G FP  Y+E
Sbjct: 6   YSYTANREDELSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212915 cd11982, SH3_Shank1, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 1

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 19/43 (44%), Positives = 30/43 (69%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 365
           V PYQ++++ E++LS G+ + V  V   G+ EG+ KG+ GWFP
Sbjct: 6   VKPYQSQAEGEISLSKGEKIKVLSVGEGGFWEGQVKGRVGWFP 48

Shank1, also called SSTRIP (Somatostatin receptor-interacting protein), is a brain-specific protein that plays a role in the construction of postsynaptic density (PSD) and the maturation of dendritic spines. Mice deficient in Shank1 show altered PSD composition, thinner PSDs, smaller dendritic spines, and weaker basal synaptic transmission, although synaptic plasticity is normal. They show increased anxiety and impaired fear memory, but also show better spatial learning. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 45.8 bits (108), Expect = 5e-07
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 333 ELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           EL+L  GD V +  K++ NGW  GE  G+ GWFP  Y+E
Sbjct: 16  ELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVE 54

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            ++P++A+S  EL+L  GD + +R+  +  W EGE  G+ G FP  Y+E
Sbjct: 4   ALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212693 cd11759, SH3_CRK_C, C-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 334 LTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           L L VGD V V K+  +G  EGE  GK G FPF ++E
Sbjct: 20  LALEVGDLVKVTKINVSGQWEGELNGKVGHFPFTHVE 56

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The C-terminal SH3 domain of CRK has not been shown to bind any target protein; it acts as a negative regulator of CRK function by stabilizing a structure that inhibits the access by target proteins to the N-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 19/44 (43%), Positives = 29/44 (65%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           Y+A+ + ELT++VGD +   K  + GW EGE KG+ G FP  ++
Sbjct: 8   YKAQHEDELTITVGDIITKIKKDDGGWWEGEIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 45.7 bits (108), Expect = 8e-07
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYIE 370
           +V+ PY+A+++ ELT+  GD V +  +   + GW EGE  G+ G FP  +++
Sbjct: 3   KVLFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFPDNFVK 54

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 45.4 bits (108), Expect = 8e-07
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 327 QAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
            A+ D EL L  GD V +  + + GW  GE  G+ G FP G++
Sbjct: 9   SAQLDEELDLREGDVVTITGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           +V+  Y  +++ EL L VGD + V      GW EG+  GK G FP  +++
Sbjct: 3   KVLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFVK 52

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             +  Y+A    +L    GD ++V    N  W EG+CKGK G FP  ++E
Sbjct: 3   VALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           ++  ++ EL++  GD + V +V   GW EG   GK GWFP  Y+ 
Sbjct: 10  FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGKTGWFPSNYVR 54

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+
Sbjct: 8   FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
           V+ ++A++  EL+   GD V + +  +  W EGE  G+ G FP  Y+E+
Sbjct: 6   VYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEK 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           Y AE + EL+L  G  V V +  ++GW  G   G+ GWFP  Y+
Sbjct: 9   YVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEG--ECKGKAGWFPFGYIE 370
           V+ PY  +S+ EL L  GD V V K   +GW +G  +  GK G FP  ++E
Sbjct: 4   VIVPYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVE 54

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           +QA+S  ELTL  GD V + K  +  W EGE  G+ G FP  Y+E
Sbjct: 9   FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRVGIFPANYVE 53

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFP 365
           + Y A    EL+   GD ++V + +++GW +G  K GK G  P
Sbjct: 4   YDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIP 46

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVR-KVTNN---GWAEGEC--KGKAGWFPFGYIER 371
           V++PY  + + EL L  GDY+ V  +  ++   GW EG     G +G  P  Y E+
Sbjct: 4   VLYPYTPQEEDELELVPGDYIYVSPEELDSSSDGWVEGTSWLTGCSGLLPENYTEK 59

UBASH3 or TULA proteins are also referred to as Suppressor of T cell receptor Signaling (STS) proteins. They contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. In some vertebrates, there are two TULA family proteins, called UBASH3A (also called TULA or STS-2) and UBASH3B (also called TULA-2 or STS-1), which show partly overlapping as well as distinct functions. UBASH3B is widely expressed while UBASH3A is only found in lymphoid cells. UBASH3A facilitates apoptosis induced in T cells through its interaction with the apoptosis-inducing factor AIF. UBASH3B is an active phosphatase while UBASH3A is not. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           Y AE + EL+L  G  V+V +  ++GW  G   G+ GWFP  Y+
Sbjct: 10  YTAEREDELSLVKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIE 370
            ++ YQA  D E++   GD +   +  + GW  G   KG+ G FP  Y+E
Sbjct: 4   ALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212926 cd11993, SH3_Intersectin1_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-1

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA-----GWFPFGYIE 370
           + +V+  Y A    +LTL+ G  +++RK    GW EGE + +      GWFP  Y++
Sbjct: 5   IAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGKKRQIGWFPANYVK 61

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|212954 cd12021, SH3_p47phox_1, First or N-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 43.0 bits (101), Expect = 6e-06
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            +  Y+  S  E+ L  GD V V + + NGW   + K K GW P  Y+E
Sbjct: 4   AIADYEKSSKSEMALKTGDVVEVVEKSENGWWFCQLKAKRGWVPASYLE 52

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the first SH3 domain (or N-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 42.9 bits (101), Expect = 7e-06
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 323 VHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYIER 371
           ++P++A +  E++ + GD + V  + V   GW  G  +G  GWFP  Y+E+
Sbjct: 7   LYPFEARNHDEMSFNAGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEK 57

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           ++ YQ E D E++    + +   ++ + GW +G C G  G FP  Y+E
Sbjct: 6   LYDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCHGHRGLFPANYVE 53

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            + ++ Y+ +   +L+   GD +++RK  +  W  GEC GK G+FP  Y++
Sbjct: 2   AKALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGKQGFFPASYVQ 52

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212766 cd11832, SH3_Shank, Src homology 3 domain of SH3 and multiple ankyrin repeat domains (Shank) proteins

 Score = 42.4 bits (100), Expect = 7e-06
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 365
           V  Y  + + E++L  GD V V  +   G+ EG  +G+ GWFP
Sbjct: 5   VKSYSPQEEGEISLHKGDRVKVLSIGEGGFWEGSVRGRTGWFP 47

Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. They bind a variety of membrane and cytosolic proteins, and exist in alternatively spliced isoforms. They are highly enriched in postsynaptic density (PSD) where they interact with the cytoskeleton and with postsynaptic membrane receptors including NMDA and glutamate receptors. They are crucial in the construction and organization of the PSD and dendritic spines of excitatory synapses. There are three members of this family (Shank1, Shank2, Shank3) which show distinct and cell-type specific patterns of expression. Shank1 is brain-specific; Shank2 is found in neurons, glia, endocrine cells, liver, and kidney; Shank3 is widely expressed. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 42.5 bits (100), Expect = 8e-06
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
           Y A  D EL+    D ++  +  ++ W  GEC G  G FP  Y+E 
Sbjct: 8   YDAAEDNELSFFENDKIINIEFVDDDWWLGECHGSRGLFPSNYVEL 53

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 42.6 bits (100), Expect = 8e-06
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 333 ELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           EL+L  GD V +  K    GW  GE  G+ GWFP  Y+E
Sbjct: 15  ELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYVE 53

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 42.5 bits (100), Expect = 9e-06
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 322 VVHPYQAESDVELTLSVGDYVV-VRKVTNNGWAEGECKGKAGWFPFGYIE 370
           V + Y A  + ELT+ VG+ +  V+K+   GW EGE  G+ G FP  +++
Sbjct: 4   VEYDYDAVHEDELTIRVGEIIRNVKKLEEEGWLEGELNGRRGMFPDNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212916 cd11983, SH3_Shank2, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 2

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 365
           VV  YQ + + E+ L  GD V V  +   G+ EG  +G  GWFP
Sbjct: 5   VVKSYQPQVEGEIPLHKGDRVKVLSIGEGGFWEGSARGHVGWFP 48

Shank2, also called ProSAP1 (Proline-rich synapse-associated protein 1) or CortBP1 (Cortactin-binding protein 1), is found in neurons, glia, endocrine cells, liver, and kidney. It plays a role in regulating dendritic spine volume and branching and postsynaptic clustering. Mutations in the Shank2 gene are associated with autism spectrum disorder and mental retardation. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 326 YQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           ++ E++ EL    GD + +  ++  N W EG   G++G+FP  Y+E
Sbjct: 9   FEPENEGELGFKEGDIITLTNQIDEN-WYEGMVNGQSGFFPVNYVE 53

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           ++ YQA  D E++    D +   ++ + GW  G C+GK G FP  Y+E
Sbjct: 5   LYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCRGKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
             +  Y+A+ D E++L  G+ V V +  ++GW       K GW P  Y+E 
Sbjct: 3   VAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVRKGDKEGWVPASYLEP 53

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           ++ Y  + D EL+   G  + V K  ++GW EG C G  G FP  Y+E
Sbjct: 5   IYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGVTGLFPGNYVE 52

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             +H Y+A+   +L    GD + V    N  W EG   G+ G FP  ++ 
Sbjct: 3   VALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSDGRVGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 326 YQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + A    EL+L  GD + ++ K    GW  GE  G+ GWFP  Y+E
Sbjct: 8   FCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVE 53

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           ++A++  EL L  GD V + K  +  W EGE  G+ G FP  YIE
Sbjct: 9   FKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRSYIE 53

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           ++ E + EL+ S GD + +++     WA+GE  GK G FP  ++
Sbjct: 8   FEGEQEDELSFSEGDVITLKEYVGEEWAKGELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           ++ Y+A+   EL+   GD + +   ++  W +  C GK G  P  Y+E
Sbjct: 5   LYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCGGKTGLIPSNYVE 52

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 15/49 (30%), Positives = 28/49 (57%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           V+H + AE   +L+L+ G+ V + +  +  W  G+CK   G FP  +++
Sbjct: 4   VLHDFPAEHSDDLSLNSGEIVYLLEKIDTEWYRGKCKNTTGIFPANHVK 52

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 40.3 bits (94), Expect = 6e-05
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 320 GEVVHPYQ--AESDVELTLSVGDYVVVRKVTNNGWAEGECKG--KAGWFPFGYIE 370
           GE V  Y   A+++VEL+L  GD VV+ K  +  W EG+  G  + G FP  Y+E
Sbjct: 1   GEAVAKYNFNADTNVELSLRKGDRVVLLKQVDQNWYEGKIPGTNRQGIFPVSYVE 55

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 39.9 bits (93), Expect = 6e-05
 Identities = 14/51 (27%), Positives = 28/51 (54%)

Query: 320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           G+ ++ Y+ +   +L  + GD +++R+  +  W  GE  G  G+ P  YI+
Sbjct: 3   GKALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGELNGCHGFLPASYIQ 53

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212873 cd11940, SH3_ARHGEF5_19, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19

 Score = 39.8 bits (93), Expect = 7e-05
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIE 370
           Y+A+ + ELTL   D ++VR+ +++GW EG     G+ GWFP  ++E
Sbjct: 8   YKAQENDELTLEKADIIMVRQQSSDGWLEGVRLSDGERGWFPQSHVE 54

ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
           ++ Y A+   EL+ + GD + + K   +GW  G  +GK G FP  Y+E+
Sbjct: 5   LYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYVEK 53

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212714 cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIER 371
            ++ Y  +++ EL L  GD V V +  ++GW  G  +  G  G FP  Y+ R
Sbjct: 4   ALYSYTPQNEDELELREGDIVYVMEKCDDGWFVGTSERTGLFGTFPGNYVAR 55

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the third SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 324 HPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYI 369
           + ++ +   +L+   GD + V  R  +   W EG  +G+ G FP  Y+
Sbjct: 6   YSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + PY A+++ EL+   GD + V    +  W  GE  G+ G FP  Y+E
Sbjct: 5   LFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGELNGQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPF 366
           G  ++ +QA    EL   VGD + +     +GW EGE KG+ G FP 
Sbjct: 2   GVALYRFQALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFPH 48

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212917 cd11984, SH3_Shank3, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 3

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 365
            V  Y  + + E+ L+ G+ V V  +   G+ EG  KG+ GWFP
Sbjct: 5   AVKAYSPQGEGEIQLNRGERVKVLSIGEGGFWEGTVKGRTGWFP 48

Shank3, also called ProSAP2 (Proline-rich synapse-associated protein 2), is widely expressed. It plays a role in the formation of dendritic spines and synapses. Haploinsufficiency of the Shank3 gene causes the 22q13 deletion/Phelan-McDermid syndrome, and variants of Shank3 have been implicated in autism spectrum disorder, schizophrenia, and intellectual disability. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 326 YQAESDVELTLSVGDYVV-VRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + A++ VEL+   GD +   R+V  N W EG   G+ G FP  Y++
Sbjct: 8   FNADTGVELSFRKGDVITLTRRVDEN-WYEGRIGGRQGIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212872 cd11939, SH3_ephexin1, Src homology 3 domain of the Rho guanine nucleotide exchange factor, ephexin-1 (also called NGEF or ARHGEF27)

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIE 370
           + VHPY ++   EL+L + D + +   T++GW  GE     + GWFP   +E
Sbjct: 3   QCVHPYVSQEPDELSLELADVLNILDKTDDGWIFGERLHDQERGWFPSSVVE 54

Ephexin-1, also called NGEF (neuronal GEF) or ARHGEF27, activates RhoA, Tac1, and Cdc42 by exchanging bound GDP for free GTP. It is expressed mainly in the brain in a region associated with movement control. It regulates the stability of postsynaptic acetylcholine receptor (AChR) clusters and thus, plays a critical role in the maturation and neurotransmission of neuromuscular junctions. Ephexin-1 directly interacts with the ephrin receptor EphA4 and their coexpression enhances the ability of ephexin-1 to activate RhoA. It is required for normal axon growth and EphA-induced growth cone collapse. Ephexin-1 contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212871 cd11938, SH3_ARHGEF16_26, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF16 and ARHGEF26

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFP 365
           E++  Y A+   EL+L   D V+V +  ++GW  GE    G+ GWFP
Sbjct: 3   EIIKAYTAKQPDELSLQQADVVLVLQTESDGWYYGERLRDGERGWFP 49

ARHGEF16, also called ephexin-4, acts as a GEF for RhoG, activating it by exchanging bound GDP for free GTP. RhoG is a small GTPase that is a crucial regulator of Rac in migrating cells. ARHGEF16 interacts directly with the ephrin receptor EphA2 and mediates cell migration and invasion in breast cancer cells by activating RhoG. ARHGEF26, also called SGEF (SH3 domain-containing guanine exchange factor), also activates RhoG. It is highly expressed in liver and may play a role in regulating membrane dynamics. ARHGEF16 and ARHGEF26 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           +V   Y  +++ EL L VGD + V      GW EG   GK G FP  +I+
Sbjct: 3   QVAFSYLPQNEDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 52

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212984 cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of Class A Dedicator of Cytokinesis proteins 1 and 5

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEG---ECKGKAGWFPFGYI 369
           G  ++ Y A    EL+L +GD V + + T  GW  G     K K G FP  YI
Sbjct: 2   GVAIYNYDARGPDELSLQIGDTVHILE-TYEGWYRGYTLRKKSKKGIFPASYI 53

Dock1, also called Dock180, and Dock5 are class A DOCKs and are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. Dock1 interacts with the scaffold protein Elmo and the resulting complex functions upstream of Rac in many biological events including phagocytosis of apoptotic cells, cell migration and invasion. Dock5 functions upstream of Rac1 to regulate osteoclast function. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. Class A DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus; they are specific GEFs for Rac. The SH3 domain of Dock1 binds to DHR-2 in an autoinhibitory manner; binding of Elmo to the SH3 domain of Dock1 exposes the DHR-2 domain and promotes GEF activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
           +  +   EL    GD + V   ++  W +GE +G+ G FP  Y++ 
Sbjct: 8   FNPQEPGELEFRRGDIITVLDSSDPDWWKGELRGRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 36.7 bits (85), Expect = 7e-04
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 334 LTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           L+   G+ + V +  + GW EGE  G  GWFP  Y+
Sbjct: 17  LSFEAGELIRVLQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212805 cd11872, SH3_DOCK_AB, Src Homology 3 domain of Class A and B Dedicator of Cytokinesis proteins

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEG---ECKGKAGWFPFGYI 369
            G  ++ +Q + + +L+L VGD V + +    GW  G     K   G FP  Y+
Sbjct: 1   YGVAIYNFQGDGEHQLSLQVGDTVQILE-ECEGWYRGFSLRNKSLKGIFPKSYV 53

DOCK proteins are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. They are divided into four classes (A-D) based on sequence similarity and domain architecture: class A includes Dock1, 2 and 5; class B includes Dock3 and 4; class C includes Dock6, 7, and 8; and class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. This subfamily includes only Class A and B DOCKs, which also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus. Class A/B DOCKs are mostly specific GEFs for Rac, except Dock4 which activates the Ras family GTPase Rap1, probably indirectly through interaction with Rap regulatory proteins. The SH3 domain of class A/B DOCKs have been shown to bind Elmo, a scaffold protein that promotes GEF activity of DOCKs by releasing DHR-2 autoinhibition by the intramolecular SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212980 cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 domain of NADPH oxidase activator 1

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 365
           H Y A+   +L  S GD + +    N  W EG C G+ G FP
Sbjct: 6   HDYSAQGPEDLEFSQGDTIDILSEVNQEWLEGHCDGRIGIFP 47

Noxa1 is a homolog of p67phox and is a cytosolic subunit of the nonphagocytic NADPH oxidase complex Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Noxa1 is co-expressed with Nox1 in colon, stomach, uterus, prostate, and vascular smooth muscle cells, consistent with its regulatory role. It does not interact with p40phox, unlike p67phox, making Nox1 activity independent of p40phox, unlike Nox2. Noxa1 contains TPR, PB1, and C-terminal SH3 domains, but lacks the central SH3 domain that is present in p67phox. The TPR domain binds activated GTP-bound Rac. The C-terminal SH3 domain binds the polyproline motif found at the C-terminus of Noxo1, a homolog of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213009 cd12076, SH3_Tks4_2, Second Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
           V++PY A    E+ L  G  V V +    GW +   +GK GW P  Y+++
Sbjct: 5   VIYPYTARDQDEINLEKGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLKK 54

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the second SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212923 cd11990, SH3_Intersectin2_2, Second Src homology 3 domain (or SH3B) of Intersectin-2

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             + +  + A+ D  L  S  D + V +   N W  GE  G  GWFP  Y++
Sbjct: 1   KAQALCSWTAKKDNHLNFSKNDIITVLEQQENWWF-GEVHGGRGWFPKSYVK 51

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212922 cd11989, SH3_Intersectin1_2, Second Src homology 3 domain (or SH3B) of Intersectin-1

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            + ++P++A+ D  L  +  D + V +   + W  GE +G+ GWFP  Y++
Sbjct: 2   AQALYPWRAKKDNHLNFNKNDVITVLE-QQDMWWFGEVQGQKGWFPKSYVK 51

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 323 VHPYQAESDVELTLSVGDYV-VVRKVTNN-GWAEGECKGKAGWFP 365
           +  Y+  ++ EL    G+ + ++ K T   GW +GE  GK G FP
Sbjct: 7   LFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKGELNGKEGVFP 51

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 13/51 (25%), Positives = 28/51 (54%)

Query: 320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            + ++ Y+ +   +L  S GD +++R+  +  W  GE  G  G+FP  +++
Sbjct: 3   AKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFVQ 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           ++PY++    +LT + GD ++V K  +  W  G    + G FP  Y+
Sbjct: 5   LYPYESNEPGDLTFNAGDVILVTK-KDGEWWTGTIGDRTGIFPSNYV 50

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           V++ Y A+ D EL++S GD V V +   +GW   E  G+ G  P  Y+E
Sbjct: 4   VLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVERNGQKGLVPGTYLE 52

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           +V+  Y  +++ EL L VGD + + +    GW  G   GK+G FP  +++
Sbjct: 4   KVLFEYVPQNEDELELKVGDIIDINEEVEEGWWSGTLNGKSGLFPSNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           ++ Y  + + EL+   G  + V K  ++GW EG   G  G FP  Y+E
Sbjct: 8   IYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 55

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 333 ELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYIE 370
           EL+L  GD V +  R   + GW +GE  G+ GWFP  Y+E
Sbjct: 16  ELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 55

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIE 370
           YQA  D E++   GD +   +  + GW  G    G  G FP  Y+E
Sbjct: 8   YQAADDTEISFDPGDIITDIEQIDEGWWRGTGPDGTYGLFPANYVE 53

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGY 368
              ++ +  E++ EL+   GD +   +  +  W  GE +GK+G FP  +
Sbjct: 2   ARALYDFTGENEDELSFKAGDIITELESIDEEWMSGELRGKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           ++ ++A  D EL  + GD + V   +N  W +G   GK G FP  Y+ 
Sbjct: 5   LYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLHGKLGLFPANYVA 52

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYI 369
           +P++A+ +  L+ + GD + V +     W  GE   G+ GWFP  Y+
Sbjct: 6   YPWRAKKENHLSFAKGDIITVLEQQEM-WWFGELEGGEEGWFPKSYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           ++ Y A++D EL  S G  + V    +  W +GE  G+ G FP  Y++
Sbjct: 6   MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGELNGQVGLFPSNYVK 53

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 323 VHPYQAESDVELTLSVGDYVVV----RKVT-NNGWAEGECKGKAGWFPFGYIER 371
           V  Y+A ++ ELTL  GD V V      V+ + GW  G+   + G FP  Y+  
Sbjct: 5   VFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKINDRVGIFPSNYVTS 58

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212949 cd12016, SH3_Tks_2, Second Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
               Y+AE++ E+    G  V V +   +GW +   +GK GW P  Y+++
Sbjct: 5   TTQAYKAENEDEIGFETGVVVEVIQKNLDGWWKIRYQGKEGWAPATYLKK 54

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the second SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 333 ELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           EL    GD + V  +++  W  G  + + GWFP  ++
Sbjct: 15  ELGFKAGDVIEVLDMSDKDWWWGSIRDEEGWFPASFV 51

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
cd07607	209	BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domai	100.0
KOG1118	366	consensus Lysophosphatidic acid acyltransferase en	100.0
KOG3725	375	consensus SH3 domain protein SH3GLB [Signal transd	100.0
cd07617	220	BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do	100.0
cd07616	229	BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do	100.0
cd07613	223	BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do	100.0
cd07594	229	BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom	100.0
cd07615	223	BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do	100.0
cd07614	223	BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do	100.0
cd07592	223	BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom	99.97
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	99.97
cd07619	248	BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of	99.95
cd07595	244	BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR)	99.95
cd07618	246	BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.94
cd07600	242	BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of	99.88
cd07620	257	BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.87
smart00721	239	BAR BAR domain.	99.78
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	99.75
KOG3771	460	consensus Amphiphysin [Intracellular trafficking,	99.73
cd07307	194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	99.68
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.53
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.39
cd07645	226	I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as	99.33
cd07606	202	BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain	99.26
cd07639	200	BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.26
KOG0162	1106	consensus Myosin class I heavy chain [Cytoskeleton	99.25
cd07646	232	I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as th	99.25
KOG2070	661	consensus Guanine nucleotide exchange factor [Nucl	99.25
cd07603	200	BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of	99.24
KOG2199	462	consensus Signal transducing adaptor protein STAM/	99.23
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.21
KOG2856	472	consensus Adaptor protein PACSIN [Signal transduct	99.2
cd07634	207	BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai	99.2
cd07604	215	BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of	99.19
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.18
KOG4226	379	consensus Adaptor protein NCK/Dock, contains SH2 a	99.16
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	99.16
cd07588	211	BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma	99.15
cd07602	207	BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR	99.14
cd07644	215	I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as	99.14
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.13
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	99.13
cd07638	200	BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	99.12
cd07590	225	BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B	99.12
PF10455	289	BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr	99.1
PF08397	219	IMD: IRSp53/MIM homology domain; InterPro: IPR0136	99.1
cd07637	200	BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	99.09
KOG4225	489	consensus Sorbin and SH3 domain-containing protein	99.06
cd07636	207	BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G	99.05
cd07601	215	BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A	99.05
cd07612	211	BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B	99.04
cd07635	207	BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of	99.03
cd07605	223	I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5	98.99
cd07642	215	BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.99
KOG4348	627	consensus Adaptor protein CMS/SETA [Signal transdu	98.96
cd07611	211	BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR)	98.93
KOG4348	627	consensus Adaptor protein CMS/SETA [Signal transdu	98.91
PF06456	229	Arfaptin: Arfaptin-like domain; InterPro: IPR01050	98.87
KOG2996	865	consensus Rho guanine nucleotide exchange factor V	98.86
cd07633	207	BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.86
cd07641	215	BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.86
KOG2546	483	consensus Abl interactor ABI-1, contains SH3 domai	98.83
KOG4225	489	consensus Sorbin and SH3 domain-containing protein	98.79
cd07640	213	BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	98.76
KOG3655	484	consensus Drebrins and related actin binding prote	98.74
cd07591	224	BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o	98.69
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.64
KOG4226	379	consensus Adaptor protein NCK/Dock, contains SH2 a	98.62
cd07643	231	I-BAR_IMD_MIM Inverse (I)-BAR, also known as the I	98.59
cd07598	211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	98.57
cd07631	215	BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.55
cd07632	215	BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.52
KOG4792	293	consensus Crk family adapters [Signal transduction	98.5
cd00011	203	BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do	98.41
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.39
KOG1702	264	consensus Nebulin repeat protein [Cytoskeleton]	98.37
cd07660	201	BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain	98.36
KOG3601	222	consensus Adaptor protein GRB2, contains SH2 and S	98.35
KOG3875	362	consensus Peroxisomal biogenesis protein peroxin [	98.29
cd07659	215	BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.26
KOG4429	421	consensus Uncharacterized conserved protein, conta	98.24
KOG3523	695	consensus Putative guanine nucleotide exchange fac	98.24
KOG4792	293	consensus Crk family adapters [Signal transduction	98.18
KOG1843	473	consensus Uncharacterized conserved protein [Funct	98.14
cd07599	216	BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o	98.07
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	98.05
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	98.02
KOG2222	848	consensus Uncharacterized conserved protein, conta	98.02
cd07624	200	BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o	97.92
cd07589	195	BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of	97.92
cd07664	234	BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.87
cd07623	224	BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of	97.87
PF06730	219	FAM92: FAM92 protein; InterPro: IPR009602 This fam	97.84
cd07625	230	BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of	97.84
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	97.76
KOG2528	490	consensus Sorting nexin SNX9/SH3PX1 and related pr	97.72
cd07627	216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	97.72
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	97.68
KOG4773	386	consensus NADPH oxidase [Energy production and con	97.68
cd07628	185	BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of	97.6
KOG3876	341	consensus Arfaptin and related proteins [Signal tr	97.56
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.5
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.49
cd07665	234	BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.44
cd07622	201	BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.39
cd07629	187	BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of	97.26
cd07667	240	BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of	97.24
KOG4575	874	consensus TGc (transglutaminase/protease-like) dom	97.2
KOG3557	721	consensus Epidermal growth factor receptor kinase	97.17
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	97.15
KOG3632	1335	consensus Peripheral benzodiazepine receptor PRAX-	97.15
KOG3565	640	consensus Cdc42-interacting protein CIP4 [Cytoskel	97.01
cd07630	198	BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain	96.99
cd07621	219	BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of	96.78
KOG3775	482	consensus Mitogen-activated protein kinase scaffol	96.62
cd07661	204	BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of	96.61
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	96.55
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	96.53
KOG3632	1335	consensus Peripheral benzodiazepine receptor PRAX-	96.51
cd07658	239	F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin	96.36
cd07663	218	BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S	96.31
KOG3601	222	consensus Adaptor protein GRB2, contains SH2 and S	96.13
smart00721	239	BAR BAR domain.	96.0
cd07597	246	BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of S	95.94
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	95.58
cd07609	214	BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domai	95.07
cd07648	261	F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am	94.99
cd07610	191	FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or	94.91
cd07662	218	BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S	94.81
cd07673	269	F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A	94.8
KOG0040	2399	consensus Ca2+-binding actin-bundling protein (spe	94.67
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	94.29
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	94.06
cd07657	237	F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin	93.85
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	93.5
cd07594	229	BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom	93.38
cd07647	239	F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/	93.29
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	93.24
cd07615	223	BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do	93.06
cd07674	261	F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A	92.73
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	92.32
cd07626	199	BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain	92.11
cd07592	223	BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom	91.95
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	91.85
cd07675	252	F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/	91.72
cd07681	258	F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin	91.42
KOG3651	429	consensus Protein kinase C, alpha binding protein	91.01
cd07655	258	F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/	90.85
KOG3812	475	consensus L-type voltage-dependent Ca2+ channel, b	90.75
smart00287	63	SH3b Bacterial SH3 domain homologues.	90.38
PRK10884	206	SH3 domain-containing protein; Provisional	89.67
cd07685	237	F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amp	88.96
KOG2996	865	consensus Rho guanine nucleotide exchange factor V	88.15
cd07686	234	F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amp	87.94
cd07649	233	F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am	87.51
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	86.55
cd07676	253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	86.28
KOG3705	580	consensus Glycoprotein 6-alpha-L-fucosyltransferas	83.54
cd07672	240	F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin	81.5
cd07650	228	F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and	81.09
KOG4384	361	consensus Uncharacterized SAM domain protein [Gene	80.43

>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins

Probab=100.00  E-value=2.1e-57  Score=402.06  Aligned_cols=208  Identities=69%  Similarity=0.983  Sum_probs=203.9

Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 016699           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN  127 (384)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~  127 (384)
                      |+|||||.||+++|||||+|||++|||+++|++|+|++++|+++|++||.|++ +.++.+++|.+.||.++++|++++++
T Consensus         1 q~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~-~~~~~LsrAa~~yG~a~~~mEkEre~   79 (209)
T cd07607           1 QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENP-SVNTALSRASLHYGSARNQMEKEREN   79 (209)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCC-CcccHHHHHHHHHhHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999997 57788999999999999999999999


Q ss_pred             HHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHH
Q 016699          128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAA  207 (384)
Q Consensus       128 ~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~a  207 (384)
                      |++.+++++++|||.|+.|+||+|+||+++||||||||.|+           ++.|+.+|+.|.+|..+++++..||+.|
T Consensus        80 l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~-----------qa~eV~RRq~k~res~~~~e~~~KL~~A  148 (209)
T cd07607          80 LHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEA-----------QAAEVARRRSKDKESGGNPDNAAKLQSA  148 (209)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999           9999999999999998999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          208 EVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG  267 (384)
Q Consensus       208 e~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~  267 (384)
                      |.|++|++++|..||+|+..+|..||.|||++|+++|.++|+|+..||++...||++|+.
T Consensus       149 E~Kl~elks~M~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~  208 (209)
T cd07607         149 ESKLDELKSSMNTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHD  208 (209)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999999999999875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i

>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-54  Score=404.72  Aligned_cols=313  Identities=24%  Similarity=0.416  Sum_probs=260.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC--CcccccchHHHh-hhHHHHHHHHHhhhhhhhHH------------HHhhhhcccc
Q 016699           11 LREQVARQQQAVFKQFGGGGYGG--SDNVVTDEAELH-QHQRLERLYISTRAGKHFQR------------DIVRGVEGYI   75 (384)
Q Consensus        11 ~~~~~a~~~q~~~~~~~~~~~~~--~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~------------~i~r~~e~~~   75 (384)
                      ++.||+|.+|-+-.++||.. |.  .|+|.-.|-|+. +..++.+|+++|..   |..            +++..+.|.+
T Consensus         1 m~kqF~ka~Q~~sEK~ggae-~TkLdDdF~eme~~vdvt~~~v~~i~~~tte---ylqpnpa~rakl~~~n~lsKvrG~~   76 (366)
T KOG1118|consen    1 MKKQFNKASQWTSEKVGGAE-GTKLDDDFLEMEKEVDVTSKGVTKILAKTTE---YLQPNPASRAKLAMLNTLSKVRGQV   76 (366)
T ss_pred             CchHHHHHHHHhcccccccc-CCcCChHHHHHHHhHHHHHHHHHHHHHhhHH---hcCCChhhhhHHHHHHHHHHhcccc
Confidence            35688888888888887643 23  899998999988 99999999988876   888            9999999975


Q ss_pred             c-CCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-
Q 016699           76 V-TGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-  153 (384)
Q Consensus        76 ~-~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-  153 (384)
                      . ++|+|.|+  +||++|++||.++|  .+|.||.+|+.+|+++++|+++++.|..++.++||+||.++... ++|++. 
T Consensus        77 k~~~ypq~e~--~Lg~~mik~gkeLg--~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~-elK~i~h  151 (366)
T KOG1118|consen   77 KEKGYPQTEG--LLGDVMIKHGKELG--DDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLK-ELKDIQH  151 (366)
T ss_pred             cCCCCccchh--HHHHHHHHHHHhcC--CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHH-HHHHHHH
Confidence            4 49999999  99999999999999  99999999999999999999999999999999999999999888 999999 


Q ss_pred             HHHHHHHHHHHHHHHhhhhhccCCcccHHHH---HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 016699          154 HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMA  230 (384)
Q Consensus       154 ~~~k~y~~~r~ele~~~~~~~~l~~~rrld~---kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~  230 (384)
                      |++|        ||+           ||||+   ++|+.|.+|+        ++|.|.+||+|+++.       +..+|+
T Consensus       152 h~KK--------LEg-----------RRldyD~kkkk~~K~~dE--------elrqA~eKfEESkE~-------aE~sM~  197 (366)
T KOG1118|consen  152 HRKK--------LEG-----------RRLDYDYKKKKQGKIKDE--------ELRQALEKFEESKEL-------AEDSMF  197 (366)
T ss_pred             HHHH--------hhh-----------hhhHHHHHHHHhccCChH--------HHHHHHHHHHHHHHH-------HHHHHH
Confidence            9998        999           99966   6677887766        999999999999988       888888


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC----CCC----CCCCCCCCCC
Q 016699          231 -----AVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPT----PSV----DTMPPPPAYE  297 (384)
Q Consensus       231 -----~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~e~qr~~s~s~~p~----p~~----~~~pp~~s~~  297 (384)
                           ++|+      +++|.+|++||++||+++..||+.|+..+.+   ++..+++.|.    |.+    ...|.-|+ .
T Consensus       198 nlle~d~eq------vsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~---r~r~a~~~prrey~p~~~~an~f~p~~~p-~  267 (366)
T KOG1118|consen  198 NLLENDVEQ------VSQLSALIQAQLDFHRQSTQILQELQMKLFS---RIRDASSQPRREYVPRSVLANEFAPSGPP-I  267 (366)
T ss_pred             HHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhcCchhhcCCcccccccCCCCCCc-c
Confidence                 4455      9999999999999999999999999999987   5655555442    111    01110000 0


Q ss_pred             CCCCcC----------------CCC---CCCCCCCCCCcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeC
Q 016699          298 EVNGIY----------------ASQ---THNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK  358 (384)
Q Consensus       298 ~~~~~~----------------~~~---s~~~~~~~~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~  358 (384)
                      ..++..                ++.   +|+.+..+...++|+++|||++++++||.|++||+|+|++..|+|||+|+..
T Consensus       268 ~~~g~~s~T~~t~~~ass~~~is~~p~~~p~rs~s~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~  347 (366)
T KOG1118|consen  268 QLNGKLSKTTSTPQSASSPSNISPKPPSTPNRSASQMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKH  347 (366)
T ss_pred             ccCCCCCcCccCccccCCcccCCCCCCCCCCcccCcccchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheec
Confidence            011100                001   1111113567789999999999999999999999999999999999999999


Q ss_pred             CeeeEecCCCeeeccCCC
Q 016699          359 GKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       359 G~~G~fP~~YVe~l~~~p  376 (384)
                      |..|+||.|||+++.|+|
T Consensus       348 g~sG~FPvnYv~vlvpl~  365 (366)
T KOG1118|consen  348 GESGMFPVNYVEVLVPLP  365 (366)
T ss_pred             CccCccccceeEEeccCC
Confidence            999999999999999886

>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-49  Score=364.76  Aligned_cols=322  Identities=18%  Similarity=0.257  Sum_probs=246.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccC-CCccc
Q 016699            4 IRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVT-GSKQV   82 (384)
Q Consensus         4 ~~~~~~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~-~~~~~   82 (384)
                      ++|-||---.=|.|.-|.-=.+||     ..+.+     |  -..|||||+.++++||+|+++|++++|+|++| +..++
T Consensus         5 ~KKlAsDAG~FfsRAvQfTEEkfg-----qAEkT-----E--LDaHfENLL~rAd~Tk~wTekil~qtEvlLQPNP~aR~   72 (375)
T KOG3725|consen    5 FKKLASDAGGFFSRAVQFTEEKFG-----QAEKT-----E--LDAHFENLLQRADKTKDWTEKILSQTEVLLQPNPTARM   72 (375)
T ss_pred             HHHHhhhcchHHHHHHHHhHHHhh-----hhhHh-----h--HHHHHHHHHHHhhhhhHHHHHHHHhhheecCCCcchhH
Confidence            456666666666777666666665     22221     2  35789999999999999999999999999999 55565


Q ss_pred             c----------------hhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcC
Q 016699           83 E----------------IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG  146 (384)
Q Consensus        83 e----------------~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~  146 (384)
                      |                +++.|+++|+.+|.|||  ++++||+||++||++.++|+.+.++|+.....+||.|||+|++|
T Consensus        73 EEf~YEKLdrK~psR~nN~ElL~qyM~dAg~efG--ptTpYG~aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlEG  150 (375)
T KOG3725|consen   73 EEFFYEKLDRKKPSRQNNLELLSQYMTDAGEEFG--PTTPYGSALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLEG  150 (375)
T ss_pred             HHHHHHHHhccCccccCCHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhc
Confidence            4                78899999999999999  99999999999999999999999999999999999999999999


Q ss_pred             CChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHH---HHHhhhhccCC----CC---------CchHHhHHHHHH
Q 016699          147 APLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV---SKRQAKVRETP----GN---------PDLALKLDAAEV  209 (384)
Q Consensus       147 ~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~---kkr~~k~~e~~----~~---------~~~~~kl~~ae~  209 (384)
                       |||+|. +|+.        |++           +|||+   |.|.+|.+...    ++         ..+++++|.|+.
T Consensus       151 -D~KTI~KERkl--------Lqn-----------kRLDLDAcKsRLKKAKaae~q~~rN~~~s~~~~ie~aEqelRvaQ~  210 (375)
T KOG3725|consen  151 -DMKTIQKERKL--------LQN-----------KRLDLDACKSRLKKAKAAELQTVRNSKTSGGFTIEQAEQELRVAQA  210 (375)
T ss_pred             -cHHHHHHHHHH--------Hhh-----------cccChHHHHHHHHHhhhhhhhccccccccCcchHhHHHHHHHHHHH
Confidence             999999 7777        999           99866   44444432211    11         146899999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCC
Q 016699          210 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDT  289 (384)
Q Consensus       210 k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~e~qr~~s~s~~p~p~~~~  289 (384)
                      +|+.+.+++++| .|.+.+. ++.+      |+||..||+||+.||.+|++.|-+|+.+|..    +.+.-.... ...+
T Consensus       211 EFDrQaEiTrLL-LEGIsst-H~nh------LrCL~dFVeaQmtyYAQcyq~MlDLQkqLg~----fps~~~s~~-~~~s  277 (375)
T KOG3725|consen  211 EFDRQAEITRLL-LEGISST-HNNH------LRCLRDFVEAQMTYYAQCYQLMLDLQKQLGG----FPSFRGSSA-ILVS  277 (375)
T ss_pred             HHhHHHHHHHHH-HHhhhhh-hhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----Ccccccccc-cccC
Confidence            999999999988 4555443 4555      9999999999999999999999999999985    322111000 0001


Q ss_pred             CCCCCCCCCC-CCcCCCCCCC----CCC-------CCCCcceeEeeccCCCCCCCCcccCCCCEEEEEee--cCCCeeEE
Q 016699          290 MPPPPAYEEV-NGIYASQTHN----GST-------DAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEG  355 (384)
Q Consensus       290 ~pp~~s~~~~-~~~~~~~s~~----~~~-------~~~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~--~d~gW~~G  355 (384)
                      +.|.|+..+. .+...+..|+    .++       ...+..+++|||||++..+.||++..+|+|+|++.  +|.+|+.|
T Consensus       278 ~sp~ps~~pt~aaa~a~a~pSgl~i~~P~~ls~l~e~sgtrkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmg  357 (375)
T KOG3725|consen  278 NSPDPSNGPTMAAAIAAAKPSGLLITSPDDLSDLKECSGTRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMG  357 (375)
T ss_pred             CCCCCCCCchHHHHHhccCCcceeecCcchhhhHHhhccccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhh
Confidence            1111111100 0000000010    011       13456789999999999999999999999999987  58899999


Q ss_pred             EeCCeeeEecCCCeeec
Q 016699          356 ECKGKAGWFPFGYIERR  372 (384)
Q Consensus       356 ~~~G~~G~fP~~YVe~l  372 (384)
                      +++|++|.+|.+|++.+
T Consensus       358 ErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  358 ERGNKKGKVPVTYLELL  374 (375)
T ss_pred             hhcCCCCCcchhHHHhc
Confidence            99999999999999875

>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2

Probab=100.00  E-value=1.4e-34  Score=268.43  Aligned_cols=193  Identities=17%  Similarity=0.256  Sum_probs=163.9

Q ss_pred             cCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCC-Ccc----------------cchhhHHH
Q 016699           27 GGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG-SKQ----------------VEIGTKLS   89 (384)
Q Consensus        27 ~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~-~~~----------------~e~~~~l~   89 (384)
                      -.+.+|+++.+..|+       +|+.|-..+++||.|+++|++++|.|++|+ ..+                +-..+.||
T Consensus         3 ~~EkiG~AE~Teld~-------df~~l~~~~D~tk~~~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg   75 (220)
T cd07617           3 TEEKLGQAEKTELDA-------HFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLG   75 (220)
T ss_pred             chhhccCccCCcCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHH
Confidence            345556677777655       578888889999999999999999999986 222                22345899


Q ss_pred             HHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHH
Q 016699           90 EDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEA  168 (384)
Q Consensus        90 ~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~  168 (384)
                      ++|++||.+||  ++|+||.||++||+|+++|+.++++|+..+.++||+||++++++ |||+|. +|+|        |++
T Consensus        76 ~~M~~~g~~~g--~~s~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~-dlk~i~k~RKk--------Le~  144 (220)
T cd07617          76 QYMTEAANDFG--PGTPYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEG-DWKTISKERRL--------LQN  144 (220)
T ss_pred             HHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHH
Confidence            99999999999  99999999999999999999999999999999999999999999 999999 8888        999


Q ss_pred             hhhhhccCCcccHHHH--HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHH
Q 016699          169 QLVISSSLKPSQAIEV--SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQQRLTL  241 (384)
Q Consensus       169 ~~~~~~~l~~~rrld~--kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~-----ve~qqq~~~l  241 (384)
                                 +|||+  +|.+.++        ++.+++.|+.||+++++.       +...|..     +++      |
T Consensus       145 -----------rRLd~D~~K~r~~k--------ae~elr~A~~kf~~~~E~-------a~~~M~~il~~~~e~------l  192 (220)
T cd07617         145 -----------RRLDLDACKARLKK--------AEHELRVAQTEFDRQAEV-------TRLLLEGISSTHVNH------L  192 (220)
T ss_pred             -----------HHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH------H
Confidence                       99977  3333222        134999999999999998       5555553     455      9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          242 QRLIAMVEAERTYHQRVLQILDQLEGEM  269 (384)
Q Consensus       242 ~~L~a~veAql~Yh~q~~~iL~qL~~eL  269 (384)
                      ++|.+||+||++||.+|+++|.+|+.+|
T Consensus       193 ~~L~~lv~AQl~Yh~q~~e~L~~l~~~~  220 (220)
T cd07617         193 RCLHEFVEAQATYYAQCYRHMLDLQKQL  220 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999998754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified

>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1

Probab=100.00  E-value=3.2e-34  Score=268.18  Aligned_cols=202  Identities=17%  Similarity=0.275  Sum_probs=169.9

Q ss_pred             hcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCC-Ccccc----------------hhhHH
Q 016699           26 FGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG-SKQVE----------------IGTKL   88 (384)
Q Consensus        26 ~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~-~~~~e----------------~~~~l   88 (384)
                      |-.+.+|+++.+..|+       +|++|-..+++||.|+++|+++++.|++|+ ..+.|                ..+.|
T Consensus         2 ~~~EkiG~AE~Te~d~-------df~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~~~~~~L   74 (229)
T cd07616           2 FTEEKFGQAEKTELDA-------HLENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRMNNPELL   74 (229)
T ss_pred             cchhhccCccCCcccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCCChHHHH
Confidence            3345566777777655       688888899999999999999999999985 22222                34599


Q ss_pred             HHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHH
Q 016699           89 SEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAE  167 (384)
Q Consensus        89 ~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele  167 (384)
                      |++|++||.+||  ++|+||.||++||+|+++|+.++.+|+..+.++|+.||++++++ |||+|. +|++        |+
T Consensus        75 g~~M~~~g~~~g--~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~-dik~i~k~RKk--------Le  143 (229)
T cd07616          75 GQYMIDAGNEFG--PGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEG-DYKTITKERKL--------LQ  143 (229)
T ss_pred             HHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HH
Confidence            999999999999  99999999999999999999999999999999999999999999 999999 8888        99


Q ss_pred             HhhhhhccCCcccHHHH---HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHH
Q 016699          168 AQLVISSSLKPSQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQQRL  239 (384)
Q Consensus       168 ~~~~~~~~l~~~rrld~---kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~-----ve~qqq~~  239 (384)
                      +           +|||+   |.|.+|.+........+.+++.|+.||+++.+.       +...|..     +++     
T Consensus       144 ~-----------rRLdyD~~K~r~~kAk~~~~~~~~e~elr~ae~efees~E~-------a~~~m~~i~~~~~e~-----  200 (229)
T cd07616         144 N-----------KRLDLDAAKTRLKKAKVAEARAAAEQELRITQSEFDRQAEI-------TRLLLEGISSTHAHH-----  200 (229)
T ss_pred             H-----------HHHHHHHHHHHHhcCCcchhhcchHHHHHHHHHHHHHHHHH-------HHHHHHhhhhcChHH-----
Confidence            9           99977   444444433333444578999999999999999       4444443     344     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          240 TLQRLIAMVEAERTYHQRVLQILDQLEGEM  269 (384)
Q Consensus       240 ~l~~L~a~veAql~Yh~q~~~iL~qL~~eL  269 (384)
                       +++|..||+||++||.+|.++|.+|+.+|
T Consensus       201 -~~~L~~lv~AQl~Yh~~~~e~L~~L~~~l  229 (229)
T cd07616         201 -LRCLNDFVEAQMTYYAQCYQYMLDLQKQL  229 (229)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence             99999999999999999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact

>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1

Probab=100.00  E-value=9.9e-34  Score=263.64  Aligned_cols=178  Identities=22%  Similarity=0.298  Sum_probs=158.2

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhhcccccCC------------------------CcccchhhHHHHHHHHhhccCCCCCC
Q 016699           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTG------------------------SKQVEIGTKLSEDSRKYGSDNTCTSG  104 (384)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~------------------------~~~~e~~~~l~~~m~~~g~e~~~~~~  104 (384)
                      +|++|-.++++||.|+++|+++++.|++|+                        ||+++.  .||++|++||.+||  ++
T Consensus         8 ~f~~le~k~D~t~~~~~~i~~~t~~~LQPNpa~r~k~~~~~~~~K~~g~~K~~~~p~~~~--~Lg~~M~~~G~elg--~d   83 (223)
T cd07613           8 DFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEA--LLAEAMLKFGRELG--DE   83 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhccccCCCCCChHh--HHHHHHHHHHhhCC--CC
Confidence            678888899999999999999999999886                        333344  89999999999999  99


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHH
Q 016699          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIE  183 (384)
Q Consensus       105 ~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld  183 (384)
                      |+||.||++||+|+++|+.++++|+..+.++||+||++++++ |+|+|. +|+|        |++           +|||
T Consensus        84 S~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~-dik~i~k~RKk--------Le~-----------rRLd  143 (223)
T cd07613          84 CNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDK-DLREIQHHLKK--------LEG-----------RRLD  143 (223)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHH-----------HHHh
Confidence            999999999999999999999999999999999999999999 999999 8888        999           9997


Q ss_pred             H--HH-HhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          184 V--SK-RQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQQRLTLQRLIAMVEAERTYH  255 (384)
Q Consensus       184 ~--kk-r~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~-----ve~qqq~~~l~~L~a~veAql~Yh  255 (384)
                      +  +| |..|.        ++.+++.|+.||+++++.       +...|..     +++      +++|.+||+||++||
T Consensus       144 ~D~~K~r~~k~--------~eeElr~A~~kFees~E~-------a~~~M~n~l~~e~e~------~~~L~~fveAQl~Yh  202 (223)
T cd07613         144 FDYKKKRQGKI--------PDEELRQALEKFDESKEI-------AESSMFNLLEMDIEQ------VSQLSALVQAQLEYH  202 (223)
T ss_pred             HHHHHHhCCCC--------cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCchH------HHHHHHHHHHHHHHH
Confidence            7  33 33332        245999999999999998       6666663     344      999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 016699          256 QRVLQILDQLEGEMLS  271 (384)
Q Consensus       256 ~q~~~iL~qL~~eL~~  271 (384)
                      ++|..+|.+|...|..
T Consensus       203 ~qa~eiL~~l~~~l~~  218 (223)
T cd07613         203 KQATQILQQVTVKLED  218 (223)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i

>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B

Probab=100.00  E-value=1.1e-33  Score=265.48  Aligned_cols=203  Identities=17%  Similarity=0.291  Sum_probs=172.5

Q ss_pred             HhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCC-Ccc----------------cchhhH
Q 016699           25 QFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG-SKQ----------------VEIGTK   87 (384)
Q Consensus        25 ~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~-~~~----------------~e~~~~   87 (384)
                      ||.++++|+.+.+-.|+       +|+.|-..++.+|.|+++|.+.++.|++|+ ..+                .-..+.
T Consensus         1 Q~~~Ek~G~aEkTe~d~-------df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~   73 (229)
T cd07594           1 QFTEEKLGTAEKTEYDA-------HFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQ   73 (229)
T ss_pred             CcchhhccccccCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHHH
Confidence            68888998888877654       577888889999999999999999999873 111                112348


Q ss_pred             HHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHH
Q 016699           88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEA  166 (384)
Q Consensus        88 l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~el  166 (384)
                      ||++|++||.+||  ++|+||.||++||+|+++|+.++.+|+..+.++||+||++++++ |+|+|. +|++        |
T Consensus        74 Lg~~M~~~g~~lg--~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~-dik~i~k~RKk--------L  142 (229)
T cd07594          74 LGQAMIEAGNDFG--PGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEG-DMKTISKERKL--------L  142 (229)
T ss_pred             HHHHHHHHHhhCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------H
Confidence            9999999999999  99999999999999999999999999999999999999999999 999999 8888        9


Q ss_pred             HHhhhhhccCCcccHHHH---HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHH
Q 016699          167 EAQLVISSSLKPSQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV-----ESQQQR  238 (384)
Q Consensus       167 e~~~~~~~~l~~~rrld~---kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~v-----e~qqq~  238 (384)
                      ++           +|||+   +.|.+|.+.....+..+.+++.|+.||+++.+.       +...|..|     ++    
T Consensus       143 e~-----------rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~E~-------a~~~M~~i~~~~~~~----  200 (229)
T cd07594         143 EN-----------KRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQAEI-------TKLLLEGISSTHANH----  200 (229)
T ss_pred             HH-----------HHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCchH----
Confidence            99           99977   445454332222356788999999999999999       66666633     44    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          239 LTLQRLIAMVEAERTYHQRVLQILDQLEGEM  269 (384)
Q Consensus       239 ~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL  269 (384)
                        +++|.+||+||++||.+|+++|.+|...|
T Consensus       201 --~~~L~~lv~AQl~Yh~q~~e~L~~l~~~l  229 (229)
T cd07594         201 --LRCLRDFVEAQMTYYAQCYQYMDDLQRQL  229 (229)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence              99999999999999999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.

>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3

Probab=100.00  E-value=7.7e-33  Score=257.92  Aligned_cols=178  Identities=21%  Similarity=0.319  Sum_probs=155.1

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhhcccccCC------------------------CcccchhhHHHHHHHHhhccCCCCCC
Q 016699           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTG------------------------SKQVEIGTKLSEDSRKYGSDNTCTSG  104 (384)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~------------------------~~~~e~~~~l~~~m~~~g~e~~~~~~  104 (384)
                      +|++|-..++++|.|+++|++.++.|++|+                        ||+.|.  .||++|++||.+||  ++
T Consensus         8 ~f~~le~~~d~t~~~~~~l~~~t~~~LqpNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~--~Lg~~M~~~G~~lg--~d   83 (223)
T cd07615           8 DFQEMERKIDVTNKVVAELLSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEG--LLGDCMLRYGRELG--EE   83 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCCCCchh--HHHHHHHHHHhhCC--CC
Confidence            566777778888888888888888887753                        555555  89999999999999  99


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHH
Q 016699          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIE  183 (384)
Q Consensus       105 ~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld  183 (384)
                      |+||.||++||+|+++|+.++++|+..+.++||+||++++++ |+|+|. +|+|        |++           +|||
T Consensus        84 S~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~-dik~i~k~RKk--------Le~-----------rRLd  143 (223)
T cd07615          84 STFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDK-DLKEIGHHLKK--------LEG-----------RRLD  143 (223)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHH-----------HHHH
Confidence            999999999999999999999999999999999999999999 999999 8888        999           9997


Q ss_pred             H--H-HHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 016699          184 V--S-KRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV-----ESQQQRLTLQRLIAMVEAERTYH  255 (384)
Q Consensus       184 ~--k-kr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~v-----e~qqq~~~l~~L~a~veAql~Yh  255 (384)
                      +  + +|..|.        ...+++.|+.||+++++.       +...|..+     +.      +++|.+||+||++||
T Consensus       144 ~D~~K~r~~k~--------~~eE~~~A~~kfees~E~-------a~~~M~n~le~e~e~------~~~L~~lv~AQl~Yh  202 (223)
T cd07615         144 FDYKKKRQGKI--------PDEEIRQAVEKFEESKEL-------AERSMFNFLENDVEQ------VSQLSVLIEAALDYH  202 (223)
T ss_pred             HHHHHHcCCCC--------cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcChHH------HHHHHHHHHHHHHHH
Confidence            7  3 233222        245999999999999988       77788743     44      999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 016699          256 QRVLQILDQLEGEMLS  271 (384)
Q Consensus       256 ~q~~~iL~qL~~eL~~  271 (384)
                      ++|..+|.+|...|..
T Consensus       203 ~~a~eiL~~l~~~l~~  218 (223)
T cd07615         203 RQSTEILEDLQSKLQN  218 (223)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e

>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2

Probab=100.00  E-value=1.3e-32  Score=256.66  Aligned_cols=178  Identities=22%  Similarity=0.340  Sum_probs=157.9

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhhcccccCC------------------------CcccchhhHHHHHHHHhhccCCCCCC
Q 016699           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTG------------------------SKQVEIGTKLSEDSRKYGSDNTCTSG  104 (384)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~------------------------~~~~e~~~~l~~~m~~~g~e~~~~~~  104 (384)
                      +|++|-..+++||.|+.+|+++++.|++|+                        ||+++.  .||++|++||.+||  ++
T Consensus         8 ~f~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~--~Lg~~M~~~G~~lg--~d   83 (223)
T cd07614           8 DFKEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEG--LLGETMIRYGKELG--DE   83 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHh--HHHHHHHHHHhhCC--CC
Confidence            677888889999999999999999999975                        444455  89999999999999  99


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHH
Q 016699          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIE  183 (384)
Q Consensus       105 ~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld  183 (384)
                      |+||.||++||+|+++|+.++..|+..+.++||+||++++++ |+|+|. +|+|        |++           +|||
T Consensus        84 S~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~-dik~i~k~RKk--------Le~-----------rRLd  143 (223)
T cd07614          84 SNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDK-DLKEIQHHLKK--------LEG-----------RRLD  143 (223)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHH-----------HHHH
Confidence            999999999999999999999999999999999999999999 999999 8888        999           9997


Q ss_pred             H--HH-HhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          184 V--SK-RQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQQRLTLQRLIAMVEAERTYH  255 (384)
Q Consensus       184 ~--kk-r~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~-----ve~qqq~~~l~~L~a~veAql~Yh  255 (384)
                      +  +| |..|.        .+.+++.|++||+++.+.       +...|..     +++      +++|..||+||++||
T Consensus       144 yD~~K~r~~k~--------~eeelr~a~ekFees~E~-------a~~~M~~il~~e~e~------~~~L~~lveAQl~Yh  202 (223)
T cd07614         144 FDYKKKRQGKI--------PDEELRQAMEKFEESKEV-------AETSMHNLLETDIEQ------VSQLSALVDAQLDYH  202 (223)
T ss_pred             HHHHHHcCCCC--------chHHHHHHHHHHHHHHHH-------HHHHHHHHHhCChHH------HHHHHHHHHHHHHHH
Confidence            7  32 32221        135999999999999999       6666663     344      999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 016699          256 QRVLQILDQLEGEMLS  271 (384)
Q Consensus       256 ~q~~~iL~qL~~eL~~  271 (384)
                      ++|..+|.+|..+|..
T Consensus       203 ~qa~eiL~~l~~~l~~  218 (223)
T cd07614         203 RQAVQILDELAEKLKR  218 (223)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated

>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A

Probab=99.97  E-value=9.1e-31  Score=245.08  Aligned_cols=178  Identities=24%  Similarity=0.334  Sum_probs=147.9

Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhcccccC------------------------CCcccchhhHHHHHHHHhhccCCCCCCC
Q 016699           50 LERLYISTRAGKHFQRDIVRGVEGYIVT------------------------GSKQVEIGTKLSEDSRKYGSDNTCTSGN  105 (384)
Q Consensus        50 ~e~l~~~~~~~k~~~~~i~r~~e~~~~~------------------------~~~~~e~~~~l~~~m~~~g~e~~~~~~~  105 (384)
                      |+.|-..++.++.|+++|++.++.|++|                        +||+++.  .||++|++||.+||  ++|
T Consensus         9 f~~le~~~d~~~~~~~~l~~~~~~~lqpNP~~r~~~~~~~~~~K~~g~~~~~~~p~~~~--~Lg~~M~~~g~elg--~~S   84 (223)
T cd07592           9 FLEMERKTDATSKLVEDLIPKTKEYLQPNPAARAKLAMQNTYSKIRGQAKSTKYPQPEG--LLGEVMLKYGRELG--EDS   84 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccCcccCCCCccc--HHHHHHHHHHhhcC--CCC
Confidence            4445555566666666666666666643                        3677666  89999999999999  999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHH
Q 016699          106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV  184 (384)
Q Consensus       106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~  184 (384)
                      +||.||++||+|+.+|+.++.+|+..+.++|++||++++++ |+++|. +|+|        |++           +|||+
T Consensus        85 ~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~-dik~i~k~RKk--------Le~-----------rRLdy  144 (223)
T cd07592          85 NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDK-DLKEINHHRKK--------LEG-----------RRLDY  144 (223)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHH-----------HHHHH
Confidence            99999999999999999999999999999999999999999 999999 8888        999           99977


Q ss_pred             --HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          185 --SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQQRLTLQRLIAMVEAERTYHQR  257 (384)
Q Consensus       185 --kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~-----ve~qqq~~~l~~L~a~veAql~Yh~q  257 (384)
                        +|++ ..+    .  .+.+++.|+.||+++++.       +...|..     +++      +++|..||+||++||++
T Consensus       145 D~~k~k-~~k----~--~eeEl~~Ae~kfe~s~E~-------a~~~M~~il~~e~e~------~~~L~~lveAQl~Yh~~  204 (223)
T cd07592         145 DYKKRK-QGK----G--PDEELKQAEEKFEESKEL-------AENSMFNLLENDVEQ------VSQLSALVEAQLDYHRQ  204 (223)
T ss_pred             HHHHHh-ccc----C--chHHHHHHHHHHHHHHHH-------HHHHHHHHHhCchHH------HHHHHHHHHHHHHHHHH
Confidence              3322 111    1  246999999999999999       5566653     344      99999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 016699          258 VLQILDQLEGEMLS  271 (384)
Q Consensus       258 ~~~iL~qL~~eL~~  271 (384)
                      |..+|.+|..+|..
T Consensus       205 ~~e~L~~l~~~L~~  218 (223)
T cd07592         205 SAEILEELQSKLQE  218 (223)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=99.97  E-value=9.9e-30  Score=236.76  Aligned_cols=195  Identities=17%  Similarity=0.224  Sum_probs=164.8

Q ss_pred             CcccccchHHHh-hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHH
Q 016699           34 SDNVVTDEAELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAAL  112 (384)
Q Consensus        34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~  112 (384)
                      +|+|+..|.+|. +|.++++|+.+|..   |.++|.|..+.--....+-++  +.||++|+.||.+||  ++|+||.||+
T Consensus         6 ~ddf~~le~~~d~~~~~~~~l~~~~~~---y~~~l~k~~~~g~~k~k~~p~--~~Lg~~M~~~g~~lg--~dS~~G~aL~   78 (215)
T cd07593           6 SEEFLELEKEIELRKEGMERLHRSTEA---YVEYLSKKKPLLDDKDKCLPV--EALGLVMINHGEEFP--QDSEYGSCLS   78 (215)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccCccccccccCChH--HHHHHHHHHHHhhCC--CCChHHHHHH
Confidence            789999999999 99999999999998   999999998521222233344  389999999999999  9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHH---HHHh
Q 016699          113 SYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV---SKRQ  188 (384)
Q Consensus       113 ~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~---kkr~  188 (384)
                      +||+|+.+|+.+++.|+..+.++||+||++++.  |+|+|. +|++        |++           +|||+   +.|.
T Consensus        79 ~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~--~~k~i~k~RKk--------Le~-----------rRLdyD~~ksk~  137 (215)
T cd07593          79 KLGRAHCKIGTLQEEFADRLSDTFLANIERSLA--EMKEYHSARKK--------LES-----------RRLAYDAALTKS  137 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--------HHH-----------HHHHHHHHHHHH
Confidence            999999999999999999999999999999994  899999 8888        999           99977   2233


Q ss_pred             hhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          189 AKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQQRLTLQRLIAMVEAERTYHQRVLQILD  263 (384)
Q Consensus       189 ~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~-----ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~  263 (384)
                      .|.+..  ....+.+++.|+.||+++.+.       +...|..     +++      +++|..||+||++||++|..+|.
T Consensus       138 ~kak~~--~~~~eeElr~Ae~kfees~E~-------a~~~M~~i~~~e~e~------~~~L~~lv~AQl~Yh~q~~e~L~  202 (215)
T cd07593         138 QKAKKE--DSRLEEELRRAKAKYEESSED-------VEARMVAIKESEADQ------YRDLTDLLDAELDYHQQSLDVLR  202 (215)
T ss_pred             Hhcccc--chhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            332222  245678999999999999999       5666663     344      99999999999999999999999


Q ss_pred             HHHHHHHH
Q 016699          264 QLEGEMLS  271 (384)
Q Consensus       264 qL~~eL~~  271 (384)
                      +|...+..
T Consensus       203 ~l~~~~~~  210 (215)
T cd07593         203 EVRQSWPS  210 (215)
T ss_pred             HHHHhccC
Confidence            99987653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2

Probab=99.95  E-value=3e-26  Score=216.45  Aligned_cols=206  Identities=13%  Similarity=0.139  Sum_probs=153.8

Q ss_pred             CCCCccccc-chHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCC-Ccccch------hhHHHHHHHHhhccCCCC
Q 016699           31 YGGSDNVVT-DEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG-SKQVEI------GTKLSEDSRKYGSDNTCT  102 (384)
Q Consensus        31 ~~~~~~~~~-~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~-~~~~e~------~~~l~~~m~~~g~e~~~~  102 (384)
                      +|+++.+-. |+       +|+.|-.+++++|.|+.+|.++++.+++|+ ..+.|.      .+.||++|.+||.++|  
T Consensus         4 ~g~aEkTe~ld~-------~~~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~elg--   74 (248)
T cd07619           4 VGRAEKTEVLSE-------DLLQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVLG--   74 (248)
T ss_pred             cccccccccccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhcC--
Confidence            345666653 43       678888889999999999999999999984 222220      2279999999999999  


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccH
Q 016699          103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQA  181 (384)
Q Consensus       103 ~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rr  181 (384)
                      ++++||.+|.+||+++++|+.++.+|+..+..+||+||++++++ ||++|. ||++        |++           +|
T Consensus        75 ~~s~lg~aL~~~gea~~kla~a~~~~d~~i~~~fl~PL~~~le~-dlk~I~k~RK~--------Le~-----------~R  134 (248)
T cd07619          75 DDSLLGKMLKLCGETEDKLAQELILFELQIERDVVEPLYVLAEV-EIPNIQKQRKH--------LAK-----------LV  134 (248)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHH--------HHh-----------hH
Confidence            99999999999999999999999999999999999999999999 999999 8888        999           99


Q ss_pred             HHH--HH-HhhhhccCCC-------CCchHHhHHHHHHHHHHHHHHHH-HhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 016699          182 IEV--SK-RQAKVRETPG-------NPDLALKLDAAEVKLHDLKSNMA-ILGKEAAAAMAA-VESQQQRLTLQRLIAMVE  249 (384)
Q Consensus       182 ld~--kk-r~~k~~e~~~-------~~~~~~kl~~ae~k~~e~~~~~~-~L~~e~~~~~~~-ve~qqq~~~l~~L~a~ve  249 (384)
                      ||+  +| |.......+.       +...+.+++.+.+++++..+.-. .+-.++...|.. +|.      +..|..||+
T Consensus       135 LD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~------~~~l~~Lv~  208 (248)
T cd07619         135 LDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALREEMEEAANRMEICRDQLSADMYSFVAKEIDY------ANYFQTLIE  208 (248)
T ss_pred             hhHHHHHHHHHhccccccccccccCCCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHH
Confidence            977  33 3321110000       11112344444444444443211 112223333332 233      888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 016699          250 AERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       250 Aql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      ||++||+++.++|+.+...+..
T Consensus       209 AQleYHr~A~eiLe~l~~~i~~  230 (248)
T cd07619         209 VQAEYHRKSLELLQSVLPQIKA  230 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins

Probab=99.95  E-value=4.4e-26  Score=216.55  Aligned_cols=195  Identities=20%  Similarity=0.265  Sum_probs=161.9

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhhcccccCCC---------cccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHH
Q 016699           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGS---------KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARA  119 (384)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~---------~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~  119 (384)
                      +|+.|-..++++|.|..+|+|+++.+++++.         +-++.  .||++|++||.++|  ++++||.||++||++++
T Consensus        16 ~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~rk~p~~--~Lg~~M~~~g~~l~--~~s~lg~~L~~~g~a~~   91 (244)
T cd07595          16 ELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLKKLPEY--GLAQSMLESSKELP--DDSLLGKVLKLCGEAQN   91 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhccCcHH--HHHHHHHHHHHhcC--CCChHHHHHHHHHHHHH
Confidence            3556666789999999999999999888852         22334  89999999999999  99999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHH---HHHhhhhc-cC
Q 016699          120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV---SKRQAKVR-ET  194 (384)
Q Consensus       120 ~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~---kkr~~k~~-e~  194 (384)
                      +|+.++.+|+..+..+|++||++++++ ||++|. +|++        |++           +|||+   ++|..|.+ +.
T Consensus        92 ~ia~~~~~~d~~i~~~fl~pL~~~le~-dik~i~k~RKk--------Le~-----------~RLd~D~~k~r~~ka~k~~  151 (244)
T cd07595          92 TLARELVDHEMNVEEDVLSPLQNILEV-EIPNIQKQKKR--------LSK-----------LVLDMDSARSRYNAAHKSS  151 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------Hhh-----------hhHHHHHHHHHHHhccccc
Confidence            999999999999999999999999999 999999 8877        999           99977   33443332 11


Q ss_pred             C------CCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          195 P------GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV-----ESQQQRLTLQRLIAMVEAERTYHQRVLQILD  263 (384)
Q Consensus       195 ~------~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~v-----e~qqq~~~l~~L~a~veAql~Yh~q~~~iL~  263 (384)
                      +      ..+....+++.|+.||+++++.       +...|..+     +.      +++|..||+||++||+++.++|+
T Consensus       152 ~~~~~~~K~~~l~eE~e~ae~k~e~~~e~-------~~~~M~~~l~~E~e~------~~~l~~lv~aQl~YH~~a~e~L~  218 (244)
T cd07595         152 GGQGAAAKVDALKDEYEEAELKLEQCRDA-------LATDMYEFLAKEAEI------ASYLIDLIEAQREYHRTALSVLE  218 (244)
T ss_pred             cccccccccchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHccHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            1      1223467999999999999988       77778744     33      99999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCC
Q 016699          264 QLEGEMLSERQRIEAAPTAP  283 (384)
Q Consensus       264 qL~~eL~~e~qr~~s~s~~p  283 (384)
                      .+...|..   ++..++++|
T Consensus       219 ~l~~~l~~---~~~~~~~kp  235 (244)
T cd07595         219 AVLPELQE---QIEQSPSKP  235 (244)
T ss_pred             HHHHHHHH---HHHhhccCC
Confidence            99999987   454444433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and

>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1

Probab=99.94  E-value=1.3e-25  Score=212.44  Aligned_cols=202  Identities=13%  Similarity=0.185  Sum_probs=161.1

Q ss_pred             CCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCC---------CcccchhhHHHHHHHHhhccCCC
Q 016699           31 YGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG---------SKQVEIGTKLSEDSRKYGSDNTC  101 (384)
Q Consensus        31 ~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~---------~~~~e~~~~l~~~m~~~g~e~~~  101 (384)
                      +|+++.+-.+.      .+|+.|-.+++++|.|+.+|+|+++.+++|+         .+-++.  .||++|.+||.++| 
T Consensus         4 ~g~aekTe~~~------~~~~~le~r~D~~k~~~~~i~k~~~~~lqpnp~~r~ek~~kk~p~~--~Lgq~M~e~~~~lg-   74 (246)
T cd07618           4 VGRAEKTEVLS------EDLLQIERRLDTVRSVSHNVHKRLIACFQGQVGTDAEKRHKKLPLT--ALAQNMQEGSAQLG-   74 (246)
T ss_pred             cccccCcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccCCHH--HHHHHHHHHHhcCC-
Confidence            34455555333      2677888889999999999999999999885         223444  89999999999999 


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCccc
Q 016699          102 TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQ  180 (384)
Q Consensus       102 ~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~r  180 (384)
                       ++|.||.+|..||++.++|+.++.++...+..+|++||++++++ ||++|. +|++        |++           +
T Consensus        75 -~~s~~g~aL~~~gea~~kla~~~~~~d~~ie~~fl~PL~~~le~-dlk~I~K~Rkk--------Le~-----------~  133 (246)
T cd07618          75 -EESLIGKMLDTCGDAENKLAFELSQHEVLLEKDILDPLNQLAEV-EIPNIQKQRKQ--------LAK-----------L  133 (246)
T ss_pred             -CCccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHH--------HHh-----------H
Confidence             99999999999999999999999999999999999999999999 999999 8887        999           9


Q ss_pred             HHHH---HHHhhhhccCCCC---------CchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 016699          181 AIEV---SKRQAKVRETPGN---------PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMA-AVESQQQRLTLQRLIAM  247 (384)
Q Consensus       181 rld~---kkr~~k~~e~~~~---------~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~-~ve~qqq~~~l~~L~a~  247 (384)
                      |||+   |+|..+....++.         +-...+++.|+.||++++.....   +....|. ++|.      +++|..|
T Consensus       134 RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~---dm~~~l~~e~e~------~~~l~~l  204 (246)
T cd07618         134 VLDWDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQLAA---DMYNFASKEGEY------AKFFVLL  204 (246)
T ss_pred             HhhHHHHHHHHHhccccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCHHH------HHHHHHH
Confidence            9977   3333332211100         11134689999999999977322   2232221 2344      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          248 VEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       248 veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      |+||++||+++.++|+.+...+..
T Consensus       205 v~aQ~eYHr~a~e~Le~~~p~i~~  228 (246)
T cd07618         205 LEAQADYHRKALAVIEKVLPEIQA  228 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.

>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins

Probab=99.88  E-value=2.1e-21  Score=184.01  Aligned_cols=147  Identities=20%  Similarity=0.251  Sum_probs=125.5

Q ss_pred             HHHHHHHHhhccCCCCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHH
Q 016699           87 KLSEDSRKYGSDNTCTS-----GNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYD  160 (384)
Q Consensus        87 ~l~~~m~~~g~e~~~~~-----~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~  160 (384)
                      .||++|.++|.++|  +     +++||.||++||+|+.+|+.++.+++..+..+|++||++++++ |+++|. +|+|   
T Consensus        82 aLs~~m~~~~~~l~--~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~-d~k~i~k~RKk---  155 (242)
T cd07600          82 ALSRAALASSLELK--SLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNT-SFQKAHKARKK---  155 (242)
T ss_pred             HHHHHHHHHHHHhC--ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---
Confidence            79999999999999  6     9999999999999999999999999999999999999999999 999999 8877   


Q ss_pred             HHHHHHHHhhhhhccCCcccHHHH---HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----H
Q 016699          161 RMRQEAEAQLVISSSLKPSQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV----E  233 (384)
Q Consensus       161 ~~r~ele~~~~~~~~l~~~rrld~---kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~v----e  233 (384)
                           +++           +|||+   |.+.+|.+..........+++.||.+|.++.+.       +...|..+    +
T Consensus       156 -----le~-----------~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~-------a~~~M~~il~~~e  212 (242)
T cd07600         156 -----VED-----------KRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVSATEE-------AVELMKEVLDNPE  212 (242)
T ss_pred             -----HHH-----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhHHH-------HHHHHHHHHhhhH
Confidence                 999           99966   334444322122334567899999999999988       55555533    4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          234 SQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE  268 (384)
Q Consensus       234 ~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~e  268 (384)
                      .      +++|..||+||+.||.+|.++|.+|...
T Consensus       213 ~------i~~L~~fv~AQl~Yh~~~~e~L~~l~~~  241 (242)
T cd07600         213 P------LQLLKELVKAQLAYHKTAAELLEELLSV  241 (242)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3      9999999999999999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1

Probab=99.87  E-value=1.9e-20  Score=176.35  Aligned_cols=184  Identities=17%  Similarity=0.180  Sum_probs=149.9

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHhhhhcccccCC---------CcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHH
Q 016699           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTG---------SKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRA  117 (384)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~---------~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a  117 (384)
                      ...+||-   ++.+|....+|.+++=.++++.         ++-++.  .||++|.+||.++|  ++|.||.+| .+|.+
T Consensus        17 l~~iEkr---vD~~k~~~~~i~kkl~~~LQpn~~~~aekr~kKlpe~--~Ls~~M~es~keLg--~dS~lg~aL-e~~~~   88 (257)
T cd07620          17 LVLVEQR---VEPAKKAAQLIHKKLQGCLQSQPGLEAEKRMKKLPLM--ALSISMAESFKDFD--AESSIRRVL-EMCCF   88 (257)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccHh--HHHHHHHHHHhhCC--CcchHHHHH-HHHHH
Confidence            4455554   6777789999999998888874         345676  89999999999999  999999999 55555


Q ss_pred             H-HHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHH--HH-Hhhhh-
Q 016699          118 R-AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV--SK-RQAKV-  191 (384)
Q Consensus       118 ~-~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~--kk-r~~k~-  191 (384)
                      . ++|+++..+|...+..+||+||..+++. ||++|. ||++        |+.           +|||+  +| |.-+. 
T Consensus        89 ~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~-dL~~I~k~rKk--------L~k-----------~~LD~D~~K~R~~~a~  148 (257)
T cd07620          89 MQNMLANILADFEMKVEKDVLQPLNKLSEE-DLPEILKNKKQ--------FAK-----------LTTDWNSAKSRSPQAA  148 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hHHHHHHHHHH--------HHh-----------HHhhHHHHHHHHHHhh
Confidence            5 9999999999999999999999999999 999999 8887        999           99977  33 33111 


Q ss_pred             ccCC--C---------------C--CchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 016699          192 RETP--G---------------N--PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV-----ESQQQRLTLQRLIAM  247 (384)
Q Consensus       192 ~e~~--~---------------~--~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~v-----e~qqq~~~l~~L~a~  247 (384)
                      +..+  +               +  .-...+++.|+.||+++++.       +...|..+     +.      +.+|..|
T Consensus       149 k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~-------~~a~Mynfl~kE~e~------a~~l~~l  215 (257)
T cd07620         149 GRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQ-------YSADLYHFATKEDSY------ANYFIRL  215 (257)
T ss_pred             ccccCCccccccccccccccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHH------HHHHHHH
Confidence            1000  0               1  12357899999999999988       66666633     33      8999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          248 VEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       248 veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      +++|++||+++..+|+.+...|..
T Consensus       216 veaQ~~YHrqsl~~Le~~l~~~~~  239 (257)
T cd07620         216 LELQAEYHKNSLEFLDKNITELKE  239 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998876

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>smart00721 BAR BAR domain

Probab=99.78  E-value=3.8e-17  Score=153.40  Aligned_cols=223  Identities=17%  Similarity=0.257  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCc-c------cc
Q 016699           11 LREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSK-Q------VE   83 (384)
Q Consensus        11 ~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~-~------~e   83 (384)
                      |+.++.|..|.|..++|++     +.+..|+       .|+.|-...+.++.+.++|++.++.|++++.. .      ..
T Consensus         2 ~~K~~~R~~q~~~ek~G~~-----e~T~~D~-------~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~   69 (239)
T smart00721        2 FKKQFNRAKQKVGEKVGKA-----EKTKLDE-------DFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKK   69 (239)
T ss_pred             ccchhHHHHHHHHHHhCCC-----CcCcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHH
Confidence            4567999999999999833     4444444       25555566677777999999999999976311 1      11


Q ss_pred             hhhHHHHHHHH--hhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHH
Q 016699           84 IGTKLSEDSRK--YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYD  160 (384)
Q Consensus        84 ~~~~l~~~m~~--~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~  160 (384)
                      ..+.|++.+..  +|.+++  .++.||.+|..+|++...++..+..| ..+..+|+.|+.+++.. +++++. ++++   
T Consensus        70 ~~~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~~~~~~~~kk---  142 (239)
T smart00721       70 LSKSLGEVYEGGDDGEGLG--ADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLLG-EFKEIKKARKK---  142 (239)
T ss_pred             HHHHHHHHhcCCCCccccC--chhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHH-HhHHHHHHHHH---
Confidence            23456777666  678888  88899999999999999999999999 99999999999999988 899999 5554   


Q ss_pred             HHHHHHHHhhhhhccCCcccHHHHHH---HhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016699          161 RMRQEAEAQLVISSSLKPSQAIEVSK---RQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQ  237 (384)
Q Consensus       161 ~~r~ele~~~~~~~~l~~~rrld~kk---r~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq  237 (384)
                           ++.           +|+||-+   +..+.+.....+... ++..++.+|+.+++.+..++.+....|+.+.....
T Consensus       143 -----~~~-----------~~lDyD~~~~kl~~~~~~~~~~~~~-kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~  205 (239)
T smart00721      143 -----LER-----------KLLDYDSARHKLKKAKKSKEKKKDE-KLAKAEEELRKAKQEFEESNAQLVEELPQLVASRV  205 (239)
T ss_pred             -----HHh-----------HHHHHHHHHHHHHHHHHhccCChhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                 555           5555511   111111111111122 77778888888888777777888989988877666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          238 RLTLQRLIAMVEAERTYHQRVLQILDQLEGEM  269 (384)
Q Consensus       238 ~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL  269 (384)
                      .+++.+|.+|+.+|++||.++..+|.++...|
T Consensus       206 ~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l  237 (239)
T smart00721      206 DFFVNCLQALIEAQLNFHRESYKLLQQLQQQL  237 (239)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66799999999999999999999999998766

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=99.75  E-value=3e-16  Score=144.72  Aligned_cols=221  Identities=19%  Similarity=0.350  Sum_probs=156.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchh-----
Q 016699           11 LREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIG-----   85 (384)
Q Consensus        11 ~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~-----   85 (384)
                      |+..+.|..|.|..++|+     ++.+..|+       .|+.+....+..+.+.++|++.++.|+.....-....     
T Consensus         1 ~~K~~~R~~q~~~~k~g~-----~~~t~~D~-------~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   68 (229)
T PF03114_consen    1 FKKKINRAKQRVKQKLGK-----SEKTEIDE-------EFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKS   68 (229)
T ss_dssp             -HHHHHHHHHHHHHHHTS-----HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTH
T ss_pred             CChHHHHHHHHHHHHcCC-----CCCCcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhH
Confidence            567899999999999983     34444444       2444444445555566666666666655433333322     


Q ss_pred             --hHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHH
Q 016699           86 --TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR  163 (384)
Q Consensus        86 --~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r  163 (384)
                        +.||++|..+|.+++  ++..+|.++..+|++...|+..+.++...+...|++||+.++ . +++++....+++++.|
T Consensus        69 ~~~~l~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~-~-~~~~i~~~~kkr~~~~  144 (229)
T PF03114_consen   69 PFEELADALIELGSEFS--DDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL-K-EFKEIKKLIKKREKKR  144 (229)
T ss_dssp             HHHHHHHHHHHHHHCTS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-H-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHhHHHHHHHHHHHHH
Confidence              389999999999999  888899999999999999999999999999999999999999 5 7999995555444444


Q ss_pred             HHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016699          164 QEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR  243 (384)
Q Consensus       164 ~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~  243 (384)
                      ..++.           -    +.+..+.++....+..+.+++.|+.+|+.+...       ....|+.+.+....+...+
T Consensus       145 ldyd~-----------~----~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~-------l~~~l~~l~~~~~~~l~~~  202 (229)
T PF03114_consen  145 LDYDS-----------A----RSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEE-------LKEELPKLFAKRQDILEPC  202 (229)
T ss_dssp             HHHHH-----------H----HHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHH-----------H----HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            44444           2    223333332221221144566666666655544       6666666654444444589


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          244 LIAMVEAERTYHQRVLQILDQLEGEM  269 (384)
Q Consensus       244 L~a~veAql~Yh~q~~~iL~qL~~eL  269 (384)
                      |..|+.++..||.++..+|.++...|
T Consensus       203 l~~~i~~q~~~~~~~~~~l~~l~~~l  228 (229)
T PF03114_consen  203 LQSFIEAQLQYFQQLYQILEELQPQL  228 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998876

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.5e-15  Score=152.63  Aligned_cols=216  Identities=19%  Similarity=0.281  Sum_probs=154.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhH
Q 016699            8 ATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTK   87 (384)
Q Consensus         8 ~~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~   87 (384)
                      |.-+++.+.|.++.|+-++|   +  .|.++ ||   +.-++.-|+......++..|+++.+....+    ....+....
T Consensus         3 ~k~~kKa~sRa~ekvlqk~g---~--~~~Tk-D~---~FE~~~~~f~~~e~e~~kLqkd~k~y~~av----~am~~a~~~   69 (460)
T KOG3771|consen    3 AKGVQKALNRAPEKVLQKLG---K--VDETK-DE---QFEQEERNFNKQEAEGKRLQKDLKNYLDAV----RAMLAASKK   69 (460)
T ss_pred             chhhHHHhccccHHHHhhcC---C--ccccc-ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            34577889999999999998   3  35665 32   122223344444556666777776655543    223333347


Q ss_pred             HHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHH------HH
Q 016699           88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQR------YD  160 (384)
Q Consensus        88 l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~------y~  160 (384)
                      |+++|+..=....  .+..|..+      +.......+.+|.+.+..+++.||..|+..  +.+|. ...||      ||
T Consensus        70 l~e~l~eiy~p~~--~g~~~l~~------v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~--fpdik~~i~KR~~Kl~DyD  139 (460)
T KOG3771|consen   70 LAESLQEIYEPDW--PGRDYLQA------VADNDDLLWKDLDQKLVDQVLLPLDTYLGQ--FPDIKKAIAKRGRKLVDYD  139 (460)
T ss_pred             HHHHHHHhcCccc--ccHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhHHHhhhh--chhHHHHHHhhcchhhhhH
Confidence            8888887554444  44444433      445677889999999999999999999998  67777 44443      89


Q ss_pred             HHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016699          161 RMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT  240 (384)
Q Consensus       161 ~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~  240 (384)
                      ++|+.++.               +.+.++|  +       +.++..||++|+..++.++.|+.+....|+.+..-+..++
T Consensus       140 ~~r~~~~k---------------vq~~k~k--d-------~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~  195 (460)
T KOG3771|consen  140 SARHSFEK---------------LQAKKKK--D-------EAKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFF  195 (460)
T ss_pred             HHHHHHHH---------------HHHhcCC--C-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            99988888               2122111  2       2377889999999999999999999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 016699          241 LQRLIAMVEAERTYHQRV---LQILDQLEGEML  270 (384)
Q Consensus       241 l~~L~a~veAql~Yh~q~---~~iL~qL~~eL~  270 (384)
                      +.-+.+|+..++.||...   +..|.++...|.
T Consensus       196 vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~  228 (460)
T KOG3771|consen  196 VPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLF  228 (460)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999   555555555443

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

Probab=99.68  E-value=6.2e-15  Score=131.65  Aligned_cols=190  Identities=23%  Similarity=0.348  Sum_probs=156.4

Q ss_pred             hhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016699           58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVA  137 (384)
Q Consensus        58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l  137 (384)
                      +.++.+.++|++.+..+.............|++.|.++|..++..++.++|.++..+|++.+.|+..+.++...+...|+
T Consensus         3 ~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~   82 (194)
T cd07307           3 DELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVI   82 (194)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677777777777666555666666899999999999984333459999999999999999999999999999999


Q ss_pred             hHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHH
Q 016699          138 EPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN  217 (384)
Q Consensus       138 ~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~  217 (384)
                      +||+.|+.+ +++.++...++|++.|.+.+.           -+-.+.+.+.+..       ...++..++.++++++..
T Consensus        83 ~pL~~~~~~-~~~~~~~~~k~~~~~~~~yd~-----------~~~k~~~~~~~~~-------~~~~l~~~~~~~~~ar~~  143 (194)
T cd07307          83 EPLKEYLKK-DLKEIKKRRKKLDKARLDYDA-----------AREKLKKLRKKKK-------DSSKLAEAEEELQEAKEK  143 (194)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhccC-------ChhHHHHHHHHHHHHHHH
Confidence            999999987 899999888999999999999           6555543333211       234889999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          218 MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       218 ~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      +..+..+....|..+...........|..|++++..||.++..++.++.
T Consensus       144 y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~  192 (194)
T cd07307         144 YEELREELIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL  192 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            9888888999998887766666789999999999999999999977653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.53  E-value=1.2e-14  Score=104.87  Aligned_cols=49  Identities=33%  Similarity=0.692  Sum_probs=45.4

Q ss_pred             eeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCee
Q 016699          322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE  370 (384)
Q Consensus       322 alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe  370 (384)
                      |+|+|.+.+++||+|.+||+|.|+...++|||.|+++|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            7899999999999999999999999999999999999999999999996

...

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.39  E-value=5.4e-13  Score=98.32  Aligned_cols=54  Identities=35%  Similarity=0.690  Sum_probs=48.5

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEE-eecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVR-KVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~-~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      .++|++||.+.++++|+|.+||+|.|+ ...++|||.|+.+|+.||||.+||+.+
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence            479999999999999999999999999 778889999999999999999999863

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1

Probab=99.33  E-value=1.9e-10  Score=106.18  Aligned_cols=190  Identities=15%  Similarity=0.156  Sum_probs=134.5

Q ss_pred             hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCC-ChhHHHHHHHHHHHHHHHHH
Q 016699           46 QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSG-NTLSKAALSYGRARAQMEKE  124 (384)
Q Consensus        46 ~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~-~~~g~al~~~g~a~~~l~~~  124 (384)
                      -+.+|.+|.   ..+|+|.+.+--.+.           .+....+++.+.|.-...++. -++|.+|+.+.++++++...
T Consensus        18 fnP~lrnLv---~lGk~Y~KA~~a~~~-----------A~~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~   83 (226)
T cd07645          18 FNPGLRNLI---NLGKNYEKAVNAMVL-----------AGKAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDS   83 (226)
T ss_pred             cCHHHHHHH---HHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            356777775   455567765533322           233456777777765443333 57999999999999999999


Q ss_pred             HHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhH
Q 016699          125 RGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKL  204 (384)
Q Consensus       125 ~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl  204 (384)
                      .++.++.++..+|.||...++. |++.+.+..|+|+..++.--.      +|++++. |+||.++|    ++++.+..++
T Consensus        84 le~~lK~Fh~Ell~~LE~k~el-D~kyi~a~~Kkyq~E~k~k~d------sLeK~~s-eLKK~RRK----sqg~kn~~ky  151 (226)
T cd07645          84 LEENFKKFHREIIAELERKTDL-DVKYMTATLKRYQTEHKNKLD------SLEKSQA-DLKKIRRK----SQGRRNASKY  151 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHH-HHHHHHhc----ccCCCCchhh
Confidence            9999999999999999999999 999999777889665553333      3444444 88776666    3344444466


Q ss_pred             HHHHHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          205 DAAEVKLHDLKSN-------------MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEML  270 (384)
Q Consensus       205 ~~ae~k~~e~~~~-------------~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~  270 (384)
                      ..-|.++.+..+.             -++|..|..+.++.||.|         |+|....+.||.+...+|.+--..+.
T Consensus       152 e~Ke~~~~e~~~~~q~el~~f~~~~~k~AL~EErRRycFlvdkh---------C~~~~~~~~yh~k~~~lL~~klp~Wq  221 (226)
T cd07645         152 EHKENEYLETVTSRQSDIQKFIADGCREALLEEKRRFCFLVDKH---------CSFSNHIHYFHQQAAELLNSKLPVWQ  221 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhChHHH
Confidence            6666555544322             446667777777777776         99999999999999999866444343

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of

>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC)

Probab=99.26  E-value=6.7e-10  Score=103.06  Aligned_cols=157  Identities=15%  Similarity=0.210  Sum_probs=115.1

Q ss_pred             hHHHHHHHHhhccCCCCCCChh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHH
Q 016699           86 TKLSEDSRKYGSDNTCTSGNTL----SKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR  161 (384)
Q Consensus        86 ~~l~~~m~~~g~e~~~~~~~~~----g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~  161 (384)
                      ..+++.+.++|.  + +.|...    |.+|.+|+.+.+.|+..++.|...+...++.||.+|+.. |+++++..+|+||+
T Consensus        39 ~~Fa~~L~~f~~--~-~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~pL~~F~k~-Dl~~vKe~kK~FdK  114 (202)
T cd07606          39 SAFAESLEEFGG--G-HDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQVEHMLNDRLAQFADT-DLQEVKDARRRFDK  114 (202)
T ss_pred             HHHHHHHHHhcC--C-CCChHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            378888888884  2 233333    358999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016699          162 MRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTL  241 (384)
Q Consensus       162 ~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l  241 (384)
                      ...++++           -+--+....++.+..        +++.|+..+..++..+.....+-...+..++....=-.|
T Consensus       115 ~s~~yd~-----------al~K~~~l~k~~k~~--------~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~l  175 (202)
T cd07606         115 ASLDYEQ-----------ARSKFLSLTKDAKPE--------ILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFL  175 (202)
T ss_pred             HHHHHHH-----------HHHHHHhccccCchH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999           332222222221221        455666666666665544434444444444433222238


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          242 QRLIAMVEAERTYHQRVLQILDQL  265 (384)
Q Consensus       242 ~~L~a~veAql~Yh~q~~~iL~qL  265 (384)
                      +.|..|+.|+.+|+++.++++.++
T Consensus       176 e~ll~~m~A~~tFF~qG~ell~~l  199 (202)
T cd07606         176 ERLSGSMDAHLAFFKSGYELLRQL  199 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            899999999999999999998776

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1

Probab=99.26  E-value=8.4e-10  Score=102.01  Aligned_cols=181  Identities=13%  Similarity=0.202  Sum_probs=137.2

Q ss_pred             hhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 016699           62 HFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLR  141 (384)
Q Consensus        62 ~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~  141 (384)
                      ...++|+|.+=+++..|.....+...+++.+.++|.++.  .|...|.+|.+|+.+.+.|...+..++.++...+++||.
T Consensus        16 ~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~--~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~   93 (200)
T cd07639          16 TRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGP--KDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQ   93 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566666666777766666666689999999999766  777899999999999999999999999999999999999


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHh-hhhccCCCCCchHHhHHHHHHHHHHHHHHHHH
Q 016699          142 AMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQ-AKVRETPGNPDLALKLDAAEVKLHDLKSNMAI  220 (384)
Q Consensus       142 ~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~-~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~  220 (384)
                      +|+.+ |++.++..+|+||+....+++           -. + |.-+ .|.+        +.+++.|...++-++..+..
T Consensus        94 ~F~k~-dl~~vKe~kK~FdK~s~~~d~-----------al-~-K~~~~~k~k--------~~e~~Ea~~~l~~~R~~F~~  151 (200)
T cd07639          94 LLVKE-DLRGFRDARKEFERGAESLEA-----------AL-Q-HNAETPRRK--------AQEVEEAAAALLGARATFRD  151 (200)
T ss_pred             HHHHh-hhHHHHHHhhhHhhcchhHHH-----------HH-H-HHhhccccc--------hHHHHHHHHHHHHHHHHHHH
Confidence            99999 999999999999999999998           21 1 1111 1111        12566666677766666544


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          221 LGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       221 L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      ...+-...+..++....=-.|+.|.+|+.|+.+|+++.++++.++.
T Consensus       152 ~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~  197 (200)
T cd07639         152 RALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALH  197 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4333444444444432222388999999999999999999998874

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=99.25  E-value=6e-12  Score=131.45  Aligned_cols=56  Identities=27%  Similarity=0.491  Sum_probs=53.3

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeee
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER  371 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~  371 (384)
                      ..+.|.|+|||.+++.+||+|.+||+|.++...++|||.|..+|+.||||.+||..
T Consensus      1050 k~p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1050 KNPVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred             CCcceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence            34789999999999999999999999999999999999999999999999999975

>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53

Probab=99.25  E-value=4.7e-10  Score=104.39  Aligned_cols=190  Identities=18%  Similarity=0.200  Sum_probs=135.3

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCC-ChhHHHHHHHHHHHHHHHHHH
Q 016699           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSG-NTLSKAALSYGRARAQMEKER  125 (384)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~-~~~g~al~~~g~a~~~l~~~~  125 (384)
                      +..+++|..   .+++|++.+.-.+.           .+....+++.+.|.-...+++ -++|.+|+++.++++.|....
T Consensus        21 nP~lrnlv~---~G~~Y~kal~a~~~-----------a~~~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~l   86 (232)
T cd07646          21 NPSLRNFIA---MGKNYEKALASVTF-----------AAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQL   86 (232)
T ss_pred             ChhHHHHHH---HhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            666777753   34446655533222           233456777787775544333 469999999999999999999


Q ss_pred             HHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHH
Q 016699          126 GNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLD  205 (384)
Q Consensus       126 ~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~  205 (384)
                      +.+++.++..+|.||...++. |++.+.+-.|+|+.-++.--.      +|.+|+. |+||.++|    ++++.+..++.
T Consensus        87 e~~lk~Fh~eli~pLE~k~E~-D~k~i~a~~Kky~~e~k~k~~------sleK~qs-eLKKlRrK----sqg~k~~~ky~  154 (232)
T cd07646          87 EEMLKSFHNELLTQLEQKVEL-DSRYLTAALKKYQTEHRSKGE------SLEKCQA-ELKKLRKK----SQGSKNPQKYS  154 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHH-HHHHHHHh----hccCCCchhhH
Confidence            999999999999999999999 999999888889655554433      4555555 77776655    22334455666


Q ss_pred             HHHHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          206 AAEVKLHDLKSN-------------MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       206 ~ae~k~~e~~~~-------------~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      .-|.++.+..+.             -+.|..|..+.++.||.|         |++....+.||.....+|.+--..+..
T Consensus       155 ~ke~q~~~~~~~~q~ele~f~~~~~k~Al~EErRRycflvdk~---------C~~~~~~~~yh~k~~~lL~~kl~~Wqe  224 (232)
T cd07646         155 DKELQYIEAISNKQGELENYVSDGYKTALTEERRRYCFLVEKQ---------CAVAKNSIAYHSKGKELLTQKLPSWQQ  224 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            666665553322             346667777777777665         999999999999999998765555543

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP

>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]

Probab=99.25  E-value=3.1e-12  Score=128.78  Aligned_cols=56  Identities=32%  Similarity=0.717  Sum_probs=53.1

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      -.++|-|.|.+.+.+||+|.+||+|+|....+.|||+|..+|+.||||+|||..+.
T Consensus        18 LvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik   73 (661)
T KOG2070|consen   18 LVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK   73 (661)
T ss_pred             eEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence            45899999999999999999999999999999999999999999999999998763

>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins

Probab=99.24  E-value=1.5e-09  Score=100.65  Aligned_cols=187  Identities=12%  Similarity=0.198  Sum_probs=140.2

Q ss_pred             hhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016699           57 TRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQV  136 (384)
Q Consensus        57 ~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~  136 (384)
                      .+.+.+..++|+|.+-+++..|...+.+...+++.+...|.++.  .|...|.+|.++|.+.+.|...+..++..+...+
T Consensus        11 ~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~--~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i   88 (200)
T cd07603          11 VSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFR--DDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTV   88 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455677788888888888777666666689999999999875  7778999999999999999999999999999999


Q ss_pred             chHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHH
Q 016699          137 AEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKS  216 (384)
Q Consensus       137 l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~  216 (384)
                      ++||++|+.+ ||+.+++.+|+||+.-..+++-+..-.+||            |.+        ..+++.+...+..++.
T Consensus        89 ~~pL~~F~k~-dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~------------K~K--------~~~~~Ea~~~L~~~Rk  147 (200)
T cd07603          89 STQLQNFVKE-DIKKVKESKKHFEKISDDLDNALVKNAQAP------------RSK--------PQEAEEATNILTATRS  147 (200)
T ss_pred             HHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHhccC------------CCC--------HHHHHHHHHHHHHHHH
Confidence            9999999999 999999999999999999999221111111            111        1256666666666666


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          217 NMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       217 ~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      .+.....+-...+..+.....--.|+-|..|+.|+.+|+++..+++.++.
T Consensus       148 ~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~  197 (200)
T cd07603         148 CFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLE  197 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            54433333333333333322222388999999999999999999988764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=99.23  E-value=3.2e-12  Score=126.02  Aligned_cols=59  Identities=22%  Similarity=0.362  Sum_probs=55.0

Q ss_pred             CCcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          315 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       315 ~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ....++||||||++..++||+|++||||+|++..+.+||.|++.+..|+||+|||....
T Consensus       213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL  271 (462)
T ss_pred             ccchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence            34567999999999999999999999999999999999999999999999999998754

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.21  E-value=2e-11  Score=87.37  Aligned_cols=46  Identities=30%  Similarity=0.620  Sum_probs=42.5

Q ss_pred             EeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecC
Q 016699          321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPF  366 (384)
Q Consensus       321 ~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~  366 (384)
                      +|+|||++..++||+|.+||+|.|++..++|||.|+.  +|+.||||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            5899999999999999999999999999999999999  479999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.20  E-value=1e-09  Score=107.47  Aligned_cols=55  Identities=24%  Similarity=0.500  Sum_probs=49.6

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEeC-CeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECK-GKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~~-G~~G~fP~~YVe~l  372 (384)
                      ..++|||||.++..+||+|++||.|.+++.. .-||+.|+.. |+.|+||+|||+.+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            5689999999999999999999999977764 5599999995 99999999999864

>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like

Probab=99.20  E-value=1.6e-09  Score=100.32  Aligned_cols=185  Identities=13%  Similarity=0.193  Sum_probs=134.1

Q ss_pred             hhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCC------hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016699           60 GKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGN------TLSKAALSYGRARAQMEKERGNLLKALG  133 (384)
Q Consensus        60 ~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~------~~g~al~~~g~a~~~l~~~~~~~~~~~~  133 (384)
                      |-.|.++|+|.+=+++..+..-.-.-..+++.+.+.|-++-  +++      ..+.+|.+|+.....|.+.+..|+.++.
T Consensus        14 t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~i--gd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~   91 (207)
T cd07634          14 TNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECI--GDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNAN   91 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33488888888888877754444444477888888876654  333      4999999999999999999999999999


Q ss_pred             hhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHH
Q 016699          134 TQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHD  213 (384)
Q Consensus       134 ~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e  213 (384)
                      ..++.||.+|+.+ |++.++..+|+||+....+++           .+--.....+++++.        +++.|.+.++-
T Consensus        92 ~~l~~pL~~f~k~-dl~~vKe~kK~FDK~se~y~~-----------aleK~l~l~~~kk~~--------~~~ea~~~l~~  151 (207)
T cd07634          92 DVLIAPLEKFRKE-QIGAAKDGKKKFDKESEKYYS-----------ILEKHLNLSAKKKES--------HLQRADTQIDR  151 (207)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHccchhHHHhHHHH-----------HHHHHHhccccCCcc--------HHHHHHHHHHH
Confidence            9999999999999 999999999999999999988           331111122222222        56666666666


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          214 LKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       214 ~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      .+..+.....+-...+..|+...-==.|+.|.+|+.|+.+|+++.++++.++.
T Consensus       152 ~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~  204 (207)
T cd07634         152 EHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFA  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            66554443333333333333322222288999999999999999999988763

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain

>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins

Probab=99.19  E-value=2.8e-09  Score=99.86  Aligned_cols=194  Identities=18%  Similarity=0.265  Sum_probs=134.8

Q ss_pred             chHHHh-hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHH
Q 016699           40 DEAELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRAR  118 (384)
Q Consensus        40 ~e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~  118 (384)
                      .|..+. ....|+||....++              ++..|...+++...+++.+.+.|...-...+...|.+|.+|+.+.
T Consensus         7 lee~l~~~~~~l~Kl~K~~k~--------------~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l   72 (215)
T cd07604           7 LEESLEGDRVGLQKLKKAVKA--------------IHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFT   72 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHH
Confidence            344444 44566666655554              445555555555678888888887654112225999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccC---
Q 016699          119 AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRET---  194 (384)
Q Consensus       119 ~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~---  194 (384)
                      +.|+..+..|..++...++.||.+|+.+ ||+++. ..+|+||+.+..++.           -+  -+.-+.|+++.   
T Consensus        73 ~El~~~~~~L~~~~~~~i~~pL~~f~k~-dL~~~k~e~KK~fdK~s~~ye~-----------~~--~k~~k~Kk~~~~~~  138 (215)
T cd07604          73 KELAALFKNLMQNLNNIIMFPLDSLLKG-DLKGSKGDLKKPFDKAWKDYET-----------KA--SKIEKEKKQLAKEA  138 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH-----------HH--HHHHhccchhhhhh
Confidence            9999999999999999999999999999 999998 999999999999887           32  11111111111   


Q ss_pred             ------CCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          195 ------PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE  268 (384)
Q Consensus       195 ------~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~e  268 (384)
                            ....+.+..+..+...|+...=.+       .-.+..+...+-.=.|+.|..|+.|+.+|+++....++++.--
T Consensus       139 ~~~r~e~~~~e~~~~l~~~R~~F~~~~~~y-------v~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~  211 (215)
T cd07604         139 GMIRTEITGAEIAEEMEKERRMFQLQMCEY-------LIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPY  211 (215)
T ss_pred             hhcchhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                  111344566777777776665332       1122233333333348899999999999999999999887653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate

>smart00326 SH3 Src homology 3 domains

Probab=99.18  E-value=4.5e-11  Score=86.70  Aligned_cols=55  Identities=31%  Similarity=0.561  Sum_probs=51.0

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeC-CeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~-G~~G~fP~~YVe~l  372 (384)
                      ..++|+|+|.+..+++|+|.+||+|.|+...++|||.+++. |+.||||.+||+.+
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~   58 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI   58 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence            46899999999999999999999999999988999999986 99999999999753

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=99.16  E-value=4.9e-11  Score=112.79  Aligned_cols=56  Identities=34%  Similarity=0.663  Sum_probs=52.8

Q ss_pred             eEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       320 a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      |.|-|.|.++.++||+|.+|+.|+|+++..+|||+|..+|+.||||+|||....+.
T Consensus       110 AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds  165 (379)
T KOG4226|consen  110 AVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDS  165 (379)
T ss_pred             eEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccc
Confidence            78899999999999999999999999999999999999999999999999876544

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=2.5e-09  Score=112.69  Aligned_cols=60  Identities=33%  Similarity=0.697  Sum_probs=54.4

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEee--cCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~--~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ...+|+|||.|++.+++|++|.+||||.|-..  ..+||+.|+..|+.||||.|||+.+...
T Consensus       692 ~~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~  753 (1118)
T KOG1029|consen  692 DTVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAV  753 (1118)
T ss_pred             ceEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccC
Confidence            45789999999999999999999999998875  5889999999999999999999987533

>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins

Probab=99.15  E-value=5.1e-09  Score=97.80  Aligned_cols=175  Identities=22%  Similarity=0.273  Sum_probs=134.9

Q ss_pred             hhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHH-hhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016699           58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQV  136 (384)
Q Consensus        58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~-~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~  136 (384)
                      ..+|.+++++.+..+.+...-..++.+    +++|.. |+.+.       .|.  -.+..+...+...+.+|...+...+
T Consensus        26 ~~~~kL~k~~K~Y~~av~~m~~~q~~~----~e~l~~lY~p~~-------~~~--~~~~~v~e~~d~~~~~l~~~l~~~V   92 (211)
T cd07588          26 ASANRLQKDLKNYLNSVRAMKQASKTL----SETLKELYEPDW-------PGR--EHLASIFEQLDLLWNDLEEKLSDQV   92 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCcc-------ccH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455778888888888866555555554    555432 22221       122  3335678888999999999999999


Q ss_pred             chHHHHHhcCCChHHHH-HHHHH------HHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHH
Q 016699          137 AEPLRAMVLGAPLDDAR-HLAQR------YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEV  209 (384)
Q Consensus       137 l~PL~~~~~~~~lk~~~-~~~k~------y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~  209 (384)
                      +.||..|+..  +++|+ ..+||      ||+.|+.++.                  .+.|.+      ..+.+|..||.
T Consensus        93 l~Pl~~~~s~--f~~i~k~I~KR~~KllDYDr~r~~~~k------------------L~~K~~------kde~KL~kae~  146 (211)
T cd07588          93 LGPLTAYQSQ--FPEVKKRIAKRGRKLVDYDSARHNLEA------------------LKAKKK------VDDQKLTKAEE  146 (211)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHhhHHHhHHHHHHHHHH------------------HHhccc------ccHhhHHHHHH
Confidence            9999999998  89988 44443      7777777777                  112211      13459999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          210 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       210 k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      +++.+++.++.|+.+....|+.+-+-+..++...+.+|+.+|..||..+..+..+|...|..
T Consensus       147 el~~Ak~~Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~~  208 (211)
T cd07588         147 ELQQAKKVYEELNTELHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMDG  208 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999888888889999999999999999999999999887754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th

>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins

Probab=99.14  E-value=6.7e-09  Score=96.49  Aligned_cols=185  Identities=13%  Similarity=0.228  Sum_probs=129.2

Q ss_pred             hhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC-CC-CCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016699           62 HFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT-CT-SGN--TLSKAALSYGRARAQMEKERGNLLKALGTQVA  137 (384)
Q Consensus        62 ~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~-~~-~~~--~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l  137 (384)
                      ...++|+|.+=+++..+..-.-.-..+++.+..++-+.- .+ .|.  .+|.+|.+||.+...|+..+..|+..+...++
T Consensus        16 ~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~   95 (207)
T cd07602          16 KAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLENAEEQLI   95 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366677777766766654444444478888888886642 10 222  48999999999999999999999999999999


Q ss_pred             hHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHH
Q 016699          138 EPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN  217 (384)
Q Consensus       138 ~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~  217 (384)
                      .||.+|+.. |+..++..+|+||+....+++           -+--+....+++++.        +++.|+..+.-++..
T Consensus        96 ~pL~~F~k~-dl~~~ke~kk~FdK~se~~~~-----------al~k~~~lsk~kk~~--------~~~ea~~~l~~~r~~  155 (207)
T cd07602          96 EPLEKFRKE-QIGGAKEEKKKFDKETEKFCS-----------SLEKHLNLSTKKKEN--------QLQEADAQLDMERRN  155 (207)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----------HHHHHhccCCCCCch--------HHHHHHHHHHHHHHH
Confidence            999999999 999999999999999999999           221111111121122        455555555555554


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          218 MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       218 ~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      +.....+-...+..|+....=-.|.-|.+|+.|+.+|+++.++++.++.
T Consensus       156 f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~  204 (207)
T cd07602         156 FHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFK  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            4333333333443443322222388999999999999999999988763

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1

>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2

Probab=99.14  E-value=3e-09  Score=97.41  Aligned_cols=165  Identities=8%  Similarity=0.059  Sum_probs=111.6

Q ss_pred             hhhHHHHHHHHhhccCCCCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHH
Q 016699           84 IGTKLSEDSRKYGSDNTCTSGN-TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRM  162 (384)
Q Consensus        84 ~~~~l~~~m~~~g~e~~~~~~~-~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~  162 (384)
                      .++...+.+.+.|+-.-.++++ .+|.+||++.+++++|....++.++.++..+|.||...++. |.+.+..-.|+|+..
T Consensus        42 aa~~Yf~Al~KiGe~A~~s~~s~~LG~vLmqisev~r~i~~~le~~lk~FH~ell~~LEkk~el-D~kyi~~s~KkYq~E  120 (215)
T cd07644          42 AAEVYFSAIAKIGEQALQSLTSQSLGEILIQMSETQRKLSADLEVVFQTFHVDLLQHMDKNTKL-DMQFIEDSRRVYELE  120 (215)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence            4455678888888877666776 59999999999999999999999999999999999999999 999999888889666


Q ss_pred             HHHHHHhhhhhccCCcccHHHHHHHhhhhc-cCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016699          163 RQEAEAQLVISSSLKPSQAIEVSKRQAKVR-ETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTL  241 (384)
Q Consensus       163 r~ele~~~~~~~~l~~~rrld~kkr~~k~~-e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l  241 (384)
                      ++.--.      +|++|++ |+++.++|.. ..-...|..+-++.....|-..- -.+.|..|..         +-++.+
T Consensus       121 ~r~k~d------sleK~~s-elkk~rrk~qkn~~e~kE~~~~lq~~~~~f~~~~-~k~Al~eErR---------Ry~Flv  183 (215)
T cd07644         121 YRHRAA------NLEKCMS-ELWRMERQRDRNVREMKENVNRLRQSMQAFLKES-QRAAELEEKR---------RYRFLA  183 (215)
T ss_pred             HHHhhh------hHHHHHH-HHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---------HHHHHH
Confidence            555444      5666766 6655443321 11001111112211111111100 0123333444         444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          242 QRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       242 ~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      ...+++....+.||.+...++.+--
T Consensus       184 ek~c~~~k~~~~yh~ka~~ll~~kl  208 (215)
T cd07644         184 EKHYLLNNTFLQFQSRARGMLQTRV  208 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5569999999999999999876543

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.13  E-value=1.1e-10  Score=83.75  Aligned_cols=51  Identities=35%  Similarity=0.644  Sum_probs=47.9

Q ss_pred             eEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCC-eeeEecCCCee
Q 016699          320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG-KAGWFPFGYIE  370 (384)
Q Consensus       320 a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G-~~G~fP~~YVe  370 (384)
                      ++|+|+|.+..+++|+|.+||+|.|+...++|||.+++.+ +.||||.+||+
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            6899999999999999999999999999889999999955 99999999986

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=2.7e-11  Score=127.14  Aligned_cols=56  Identities=30%  Similarity=0.552  Sum_probs=52.3

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ..+.++|||.+++++||+|.+||+|.|+.+.+.+||.|+++|..|+||+|||....
T Consensus      1054 ~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~t 1109 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQT 1109 (1118)
T ss_pred             ceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCccccccccc
Confidence            45688999999999999999999999999999999999999999999999996653

>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2

Probab=99.12  E-value=1.1e-08  Score=94.74  Aligned_cols=179  Identities=12%  Similarity=0.231  Sum_probs=122.9

Q ss_pred             HHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHh
Q 016699           65 RDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMV  144 (384)
Q Consensus        65 ~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~  144 (384)
                      .+++|.+=+++..+..-.-....++..+..++...+  .|...|.+|.+|+.+...|+..+..|...+...++.||.+|+
T Consensus        19 ~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~--~De~i~~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~~L~~F~   96 (200)
T cd07638          19 DKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSS--KDAVIETSLTKFSDTLQEMINYHTILFDQAQRSIKAQLQTFV   96 (200)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444333333334478887777776555  777889999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHH
Q 016699          145 LGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKE  224 (384)
Q Consensus       145 ~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e  224 (384)
                      .. |+..++..+|+||+...+.+.      +|.+.-++      .|.++        .+++.|...+.-++..+.....+
T Consensus        97 k~-dl~~vke~kk~FdK~s~~~~~------aL~K~~~~------~k~k~--------~e~eEa~~~l~~~r~~F~~~~ld  155 (200)
T cd07638          97 KE-DLRKFKDAKKQFDKVSEEKEN------ALVKNAQV------QRNKQ--------HEVEEATNILTATRKCFRHIALD  155 (200)
T ss_pred             HH-HhHHHHHHHHHHHHHhHHHHH------HHHHhccC------CcCch--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 999999999999999988888      11111111      11111        14455555555555444333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          225 AAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       225 ~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      -...+..++....=-.|.-|.+|+.|+..|+++.++++.++.
T Consensus       156 Yv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~  197 (200)
T cd07638         156 YVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELG  197 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            344444443332222388999999999999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3

Probab=99.12  E-value=8.5e-09  Score=97.18  Aligned_cols=186  Identities=15%  Similarity=0.221  Sum_probs=140.6

Q ss_pred             HHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016699           55 ISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGT  134 (384)
Q Consensus        55 ~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~  134 (384)
                      .-..+++..+++..+..+.+......+..+    ++++.... +  +.++..+..+.-.+-.+.+.|.+...+++..+..
T Consensus        22 ~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~i----s~~l~~~~-~--~~~~~~~~~~~e~y~~~~~~l~~~~~~~~~~~~~   94 (225)
T cd07590          22 QLESTTKKLYKDMKKYIEAVLALSKAEQRL----SQDLASGP-L--CEDNDELRNLVEALDSVTTQLDKTVQELVNLIQK   94 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHhcc-c--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334566778888888888876555555544    44444422 1  1234456667777888888888888999999999


Q ss_pred             hhchHHHHHhcCCChHHHH-HHHHH------HHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHH
Q 016699          135 QVAEPLRAMVLGAPLDDAR-HLAQR------YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAA  207 (384)
Q Consensus       135 ~~l~PL~~~~~~~~lk~~~-~~~k~------y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~a  207 (384)
                      .|++||..|+..  +++|+ ..+||      ||+.|..++.                  .+.|    +....+..||..|
T Consensus        95 ~vl~Pl~~~~s~--f~~I~~~I~KR~~Kl~DYD~~r~~~~k------------------l~~K----~~k~~~~~KL~ka  150 (225)
T cd07590          95 TFIEPLKRLRSV--FPSVNAAIKRREQSLQEYERLQAKVEK------------------LAEK----EKTGPNLAKLEQA  150 (225)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHH------------------HHhC----ccCChhHHHHHHH
Confidence            999999999998  79988 44443      5555555555                  2222    1111224699999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          208 EVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       208 e~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      |..|+.+++.+..++.+....|+.+.+-+..++...+.+|+..|+.||..+...+.+|+..+..
T Consensus       151 e~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~  214 (225)
T cd07590         151 EKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDN  214 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999988777777888899999999999999999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=99.10  E-value=4.4e-09  Score=102.09  Aligned_cols=154  Identities=19%  Similarity=0.301  Sum_probs=110.5

Q ss_pred             HHHHHHHHhh---ccC--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHH
Q 016699           87 KLSEDSRKYG---SDN--TCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR  161 (384)
Q Consensus        87 ~l~~~m~~~g---~e~--~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~  161 (384)
                      .|+.......   .++  .....++++.+|.+|+.+..+|+..|-+++..+...|..||+..+.. +++.+...+|    
T Consensus       125 ALSraa~~ss~~l~~l~~~~~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~-~~~~a~k~Rk----  199 (289)
T PF10455_consen  125 ALSRAALTSSEILEELKSSDEDEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNT-DFKKANKARK----  199 (289)
T ss_pred             HHHHHHHHhHHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----
Confidence            4666666666   444  11255789999999999999999999999999999999999999998 7888873333    


Q ss_pred             HHHHHHHhhhhhccCCcccHHHH--HHHhhhhccCC-CCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHH
Q 016699          162 MRQEAEAQLVISSSLKPSQAIEV--SKRQAKVRETP-GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV-ESQQQ  237 (384)
Q Consensus       162 ~r~ele~~~~~~~~l~~~rrld~--kkr~~k~~e~~-~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~v-e~qqq  237 (384)
                         ..++           .||++  .|-.-|..+.+ ..+....++..+|.+|...-+.       |..-|..| +... 
T Consensus       200 ---kV~~-----------sRL~~D~~R~~~k~~~~pekee~~r~~lE~aEDeFv~aTee-------Av~~Mk~vl~~~e-  257 (289)
T PF10455_consen  200 ---KVEN-----------SRLQFDAARANLKNKAKPEKEEQLRVELEQAEDEFVSATEE-------AVEVMKEVLDNSE-  257 (289)
T ss_pred             ---HHHH-----------HHHHHHHHHHHhcccCCcccCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcCcc-
Confidence               3666           66533  22222211111 1222345677888888777766       77777755 1110 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          238 RLTLQRLIAMVEAERTYHQRVLQILDQLEGEM  269 (384)
Q Consensus       238 ~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL  269 (384)
                        .+.-|..|+.||+.||..|.+.|..+...|
T Consensus       258 --~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l  287 (289)
T PF10455_consen  258 --PLRLLKELVKAQLEYHKKAAEALSELLKSL  287 (289)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              188999999999999999999999987765

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].

>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family

Probab=99.10  E-value=1.5e-08  Score=95.13  Aligned_cols=196  Identities=16%  Similarity=0.250  Sum_probs=131.5

Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCC-CCChhHHHHHHHHHHHHHHHHHHH
Q 016699           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCT-SGNTLSKAALSYGRARAQMEKERG  126 (384)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~-~~~~~g~al~~~g~a~~~l~~~~~  126 (384)
                      ..+|+|.....   .|++.+--.+..           +..+.+++.+-|.--..+ ...++|.+|+++.++++.|+..++
T Consensus        10 P~~e~lv~~~~---kY~~al~~~~~a-----------~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~   75 (219)
T PF08397_consen   10 PAWENLVSLGK---KYQKALRAMSQA-----------AAAFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELE   75 (219)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHH-----------HHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence            77888875554   466555333222           123444554444321111 234699999999999999999999


Q ss_pred             HHHHHHhhhhchHHHHHhcCCChHHHHHHHHHH----HHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHH
Q 016699          127 NLLKALGTQVAEPLRAMVLGAPLDDARHLAQRY----DRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLAL  202 (384)
Q Consensus       127 ~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y----~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~  202 (384)
                      .+...+...||.||...++. |.|.+....|+|    .+.+.+++.           ..-|++|.++|.+..  ......
T Consensus        76 ~~~~~~~~~li~pLe~~~e~-d~k~i~~~~K~y~ke~k~~~~~l~K-----------~~se~~Kl~KK~~kg--k~~~~~  141 (219)
T PF08397_consen   76 EVFKAFHSELIQPLEKKLEE-DKKYITQLEKDYEKEYKRKRDELKK-----------AESELKKLRKKSRKG--KDDQKY  141 (219)
T ss_dssp             HHHHHHHHHTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHCCCCCC--TSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhcccCC--CccccH
Confidence            99999999999999999999 899888777777    444455554           444666655553321  122233


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          203 KLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       203 kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      .++.+...+.+-...+..+..+..+....-|..+..+.+.+++.|+...+.||.++..+|++.-..+..
T Consensus       142 ~~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~~  210 (219)
T PF08397_consen  142 ELKEALQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQE  210 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            455555555555544444444444433233555667778889999999999999999999888888876

In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.

>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3

Probab=99.09  E-value=1.9e-08  Score=93.35  Aligned_cols=159  Identities=15%  Similarity=0.252  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHH
Q 016699           85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ  164 (384)
Q Consensus        85 ~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~  164 (384)
                      ...++..+..+..++.  .|.....+|.+||++.+.|...+..++..+...+++||++|+.+ ||+.+++.+|+||+...
T Consensus        39 ~~~F~~~l~d~~~~~~--gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~-dL~~~KE~rK~Fdk~se  115 (200)
T cd07637          39 NKLFVSGIRDLSQQCK--KDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKE-DVRKFKETKKQFDKVRE  115 (200)
T ss_pred             HHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence            4467888888888866  88889999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          165 EAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRL  244 (384)
Q Consensus       165 ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L  244 (384)
                      .+++-+.             +.-+.+.++.       .+++.+...+..++..+.....+-...+..++....=-.|+-|
T Consensus       116 ~yd~al~-------------k~~~~k~kk~-------~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~l  175 (200)
T cd07637         116 DLEIALV-------------KNAQAPRHKP-------HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSM  175 (200)
T ss_pred             HHHHHHH-------------HHhhcCCCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988111             1111221111       2566666666666666444433333333344333222238899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 016699          245 IAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       245 ~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      .+|+.|+.+|+++.++++.++.
T Consensus       176 l~~~~a~~tff~qG~el~~~~~  197 (200)
T cd07637         176 LSFMHAQYTFFQQGYSLLHELD  197 (200)
T ss_pred             HHHHHHHHHHHHhHHHHHHhhc
Confidence            9999999999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]

Probab=99.06  E-value=2.3e-10  Score=114.21  Aligned_cols=57  Identities=28%  Similarity=0.560  Sum_probs=54.7

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ..++|+|+|.++...||+|.+||+|.|+.+.|.+|++|+++|+.|+||+||||.+.+
T Consensus       231 ~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~  287 (489)
T KOG4225|consen  231 RAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP  287 (489)
T ss_pred             chhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence            348999999999999999999999999999999999999999999999999999876

>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase

Probab=99.05  E-value=1.4e-08  Score=94.32  Aligned_cols=185  Identities=11%  Similarity=0.219  Sum_probs=137.7

Q ss_pred             hhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCC------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699           58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGN------TLSKAALSYGRARAQMEKERGNLLKA  131 (384)
Q Consensus        58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~------~~g~al~~~g~a~~~l~~~~~~~~~~  131 (384)
                      +.+..+.++|+|.+=+++..+..-.-.-..+++.+..++-++-  +++      ....+|.+|+.+...|+..++.|+..
T Consensus        12 e~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~--gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~q   89 (207)
T cd07636          12 DKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCI--GDAETDDEICIARSLQEFAAVLRNLEDERTRMIEN   89 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445688888888888877654444444478888888886543  222      26699999999999999999999999


Q ss_pred             HhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHh--hhhccCCCCCchHHhHHHHHH
Q 016699          132 LGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQ--AKVRETPGNPDLALKLDAAEV  209 (384)
Q Consensus       132 ~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~--~k~~e~~~~~~~~~kl~~ae~  209 (384)
                      +...++.||.+|+.. |++.++..+|+||+....+++           -+  .|..+  +|.|+.        +++.|..
T Consensus        90 a~~~l~~~L~~F~ke-di~~~Ke~kK~FdK~se~~~~-----------al--~k~~~ls~k~K~~--------~~eEA~~  147 (207)
T cd07636          90 ASEVLITPLEKFRKE-QIGAAKEAKKKYDKETEKYCA-----------VL--EKHLNLSSKKKES--------QLHEADS  147 (207)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhhhHhhhhhHHHH-----------HH--HHHhcCcccCCch--------HHHHHHH
Confidence            999999999999999 999999999999999999999           22  12222  122222        6888888


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          210 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       210 k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      .+..++..+.....+-.-.+..|+....==.|..|.+|+.|+..|+++.++++.++.
T Consensus       148 ~L~~~r~~F~~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~  204 (207)
T cd07636         148 QVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFS  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            888777776555444444444443322222288999999999999999999988763

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o

>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins

Probab=99.05  E-value=4.1e-08  Score=91.83  Aligned_cols=188  Identities=13%  Similarity=0.183  Sum_probs=128.5

Q ss_pred             hhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhcc-CC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 016699           61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSD-NT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAE  138 (384)
Q Consensus        61 k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e-~~-~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~  138 (384)
                      ..+.++|+|.+=+++..+..-.-+-..++..+..++.. |+ ++.|...+.+|.+|+.+.+.|+..+..|...+...++.
T Consensus        15 ~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~   94 (215)
T cd07601          15 SSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLH   94 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44666666666666666544444444788888888654 22 24555677899999999999999999999999999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHH
Q 016699          139 PLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM  218 (384)
Q Consensus       139 PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~  218 (384)
                      ||.+|+.+ |+++++..+|+||+.....++-++=..+||+           +.+.+....+++.++..+...|..+.=. 
T Consensus        95 pL~~F~k~-Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k-----------~k~~~~~~~Ea~~~l~~~R~~F~~~~ld-  161 (215)
T cd07601          95 PISQFMES-DLAEIMTLKELFKAASNDHDGVLSKYSRLSK-----------KRENTKVKIEVNDEVYACRKKQHQTAMN-  161 (215)
T ss_pred             HHHHHHHH-HhHHHHHHHHHHHHHhHHHHHHHHHHhhCCc-----------CCCchHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            99999999 9999999999999999999992221122221           1111100013444555555555555432 


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 016699          219 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD-QLEG  267 (384)
Q Consensus       219 ~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~-qL~~  267 (384)
                            -...+..++....==.|+.|.+|+.|+.+|+++.++++. ++..
T Consensus       162 ------Yv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~p  205 (215)
T cd07601         162 ------YYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEE  205 (215)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  222222232222112288999999999999999999987 5544

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2

Probab=99.04  E-value=1.9e-08  Score=93.66  Aligned_cols=177  Identities=15%  Similarity=0.191  Sum_probs=134.8

Q ss_pred             hhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016699           57 TRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQV  136 (384)
Q Consensus        57 ~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~  136 (384)
                      ...++..+++..+..+.+..--..|+.+.+-|.+   -|+.+.|  ..+.+       ..+.......+.+|...+...+
T Consensus        25 e~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e---~Y~~~~~--~~~~~-------~~v~e~~d~~~~~~~~~~~~~v   92 (211)
T cd07612          25 QSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQD---IYEPDWD--GHEDL-------GAIVEGEDLLWNDYEAKLHDQA   92 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCcC--cccHH-------HHHHhccHHHHHHHHHHHHHHH
Confidence            3566778888888888765555556655333433   3555554  33222       2344666679999999999999


Q ss_pred             chHHHHHhcCCChHHHH-HHHHH------HHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHH
Q 016699          137 AEPLRAMVLGAPLDDAR-HLAQR------YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEV  209 (384)
Q Consensus       137 l~PL~~~~~~~~lk~~~-~~~k~------y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~  209 (384)
                      |+||..|+..  +.+|+ ..+||      ||+.|+.++.                  .+.|.+      ..+.||..||+
T Consensus        93 L~pi~~~~s~--f~~i~~~i~KR~~KllDYD~~R~~~~k------------------l~~k~~------kD~~KL~kAe~  146 (211)
T cd07612          93 LRTMESYMAQ--FPDVKERVAKRGRKLVDYDSARHHLEA------------------LQNAKK------KDDAKIAKAEE  146 (211)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHH------------------HHhccc------ccHHHHHHHHH
Confidence            9999999998  78888 44443      7777777776                  111111      12459999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          210 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       210 k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      +++.+++.++.|+.+....|+.+.+-+..++...+.+|+.+|..||..+..+..+|...|..
T Consensus       147 el~~Ak~~ye~lN~~L~~ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~  208 (211)
T cd07612         147 EFNRAQVVFEDINRELREELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKK  208 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999887888889999999999999999999999999887753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (

>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2

Probab=99.03  E-value=4.2e-08  Score=91.11  Aligned_cols=185  Identities=11%  Similarity=0.211  Sum_probs=124.3

Q ss_pred             hhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC---CCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016699           62 HFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT---CTS-GNTLSKAALSYGRARAQMEKERGNLLKALGTQVA  137 (384)
Q Consensus        62 ~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~---~~~-~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l  137 (384)
                      .+.++|+|.+=++++.+..-.-.-..+++.+...+-++-   .+. ....|.+|.+|+.++..|...++.|..++...++
T Consensus        16 k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~   95 (207)
T cd07635          16 RFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALNVTETLI   95 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366777777777776654333333466777777775442   111 1234799999999999999999999999999999


Q ss_pred             hHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHH
Q 016699          138 EPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN  217 (384)
Q Consensus       138 ~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~  217 (384)
                      .||.+|+.. |++.++..+|+||+...++++           -..-+.+.+++.++.        +++.|...+.-++..
T Consensus        96 ~pL~~F~ke-dl~~~Ke~KK~FdK~se~~~~-----------Al~K~~~ls~kkk~~--------e~~EA~~~l~~~r~~  155 (207)
T cd07635          96 KPLERFRKE-QLGAVKEEKKKFDKETEKNYS-----------LLEKHLNLSAKKKEP--------QLQEADVQVEQNRQH  155 (207)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHhhhHHHH-----------HHHHHHhccCCCCcc--------HHHHHHHHHHHHHHH
Confidence            999999999 999999999999999999999           221111232232222        344444444444443


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          218 MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       218 ~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      +.....+-.-.+..|+....=-.|.-|.+|+.|+..|+++.++++.++.
T Consensus       156 F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~  204 (207)
T cd07635         156 FYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFN  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            3222222222222332221112288999999999999999999988763

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote

>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes

Probab=98.99  E-value=7.2e-08  Score=90.79  Aligned_cols=171  Identities=16%  Similarity=0.186  Sum_probs=120.1

Q ss_pred             HHHHHHHHhhccCCCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHH----HH
Q 016699           87 KLSEDSRKYGSDNTCT-SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRY----DR  161 (384)
Q Consensus        87 ~l~~~m~~~g~e~~~~-~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y----~~  161 (384)
                      .+.+++.+-|.-...+ +.-++|.+|+++.+.++.++...+.+...+...+|.||..-++. |.|.+....|+|    .+
T Consensus        45 ~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~-d~k~i~~~~K~y~~E~K~  123 (223)
T cd07605          45 VFFDALAKIGELASQSRGSQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLEL-DQKVINKFEKDYKKEYKQ  123 (223)
T ss_pred             HHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHH
Confidence            5666666666543321 33479999999999999999999999999999999999999999 999999888887    44


Q ss_pred             HHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016699          162 MRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTL  241 (384)
Q Consensus       162 ~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l  241 (384)
                      .|.+++.           ..-|++|.++|.+.. +.+....++..+.+.+.+-...+..+.....+....-|+.+..+.|
T Consensus       124 ~~~~l~K-----------~~sel~Kl~KKs~~~-~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv  191 (223)
T cd07605         124 KREDLDK-----------ARSELKKLQKKSQKS-GTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLV  191 (223)
T ss_pred             HHHHHHH-----------HHHHHHHHHHHHccc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456665           555776666554432 2233344666666655555444444433333332223555666778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          242 QRLIAMVEAERTYHQRVLQILDQLEGEML  270 (384)
Q Consensus       242 ~~L~a~veAql~Yh~q~~~iL~qL~~eL~  270 (384)
                      .+++.|++.+.+||......|++.-..+.
T Consensus       192 ~~~c~v~~~e~~~~~~~~~~L~~~l~~w~  220 (223)
T cd07605         192 DKHCSVAKHEIAYHAKAMTLLSTRLPLWQ  220 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            88999999999999999988876555443

Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me

>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2

Probab=98.99  E-value=7.2e-08  Score=89.50  Aligned_cols=172  Identities=16%  Similarity=0.265  Sum_probs=119.9

Q ss_pred             ccCCCcccchhhHHHHHHHHhhcc--CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHH
Q 016699           75 IVTGSKQVEIGTKLSEDSRKYGSD--NTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDA  152 (384)
Q Consensus        75 ~~~~~~~~e~~~~l~~~m~~~g~e--~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~  152 (384)
                      ...|...+++-..+.+.+.+-|..  +.  ++...|.+|+++|.+.+.|......|..++...+..||.+|+.+ |++.+
T Consensus        29 ~~sG~~yv~~~~~f~~~L~~LG~~~l~~--dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~-dLr~v  105 (215)
T cd07642          29 HTSGLAHVENEEQYTQALEKFGSNCVCR--DDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKG-DLKGV  105 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHh
Confidence            344555555555566666666664  33  67789999999999999999999999999999999999999999 99999


Q ss_pred             H-HHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhh---ccCC------CCCchHHhHHHHHHHHHHHHHHHHHhH
Q 016699          153 R-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKV---RETP------GNPDLALKLDAAEVKLHDLKSNMAILG  222 (384)
Q Consensus       153 ~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~---~e~~------~~~~~~~kl~~ae~k~~e~~~~~~~L~  222 (384)
                      + ..+|.||+.+..+|+           ...  ++-+.+.   |...      .+.|....+..+..-|+...-.+-.- 
T Consensus       106 K~d~KK~fdK~~~dyE~-----------~~~--k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~-  171 (215)
T cd07642         106 KGDLKKPFDKAWKDYET-----------KVT--KIEKEKKEHAKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLK-  171 (215)
T ss_pred             HHHHHHHHHHHHHHHHH-----------HHH--HHHhhhhccCCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence            8 888889999999999           442  2211111   1111      11334445555555555544332111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          223 KEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEM  269 (384)
Q Consensus       223 ~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL  269 (384)
                            +..+...+-.=.|+.+..+..||.+|+++....+++|.--+
T Consensus       172 ------in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~  212 (215)
T cd07642         172 ------VNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSI  212 (215)
T ss_pred             ------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  11222222233388999999999999999999999886544

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i

>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]

Probab=98.96  E-value=3e-10  Score=113.19  Aligned_cols=56  Identities=36%  Similarity=0.582  Sum_probs=52.4

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEee--cCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~--~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      -+|+++|.|++++++||.|++||+|.++.+  ++.|||+|+.+|+.|.||-|||+.+.
T Consensus       262 eycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~  319 (627)
T KOG4348|consen  262 EYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ  319 (627)
T ss_pred             hheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence            479999999999999999999999998887  47899999999999999999998875

>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II

Probab=98.93  E-value=1.2e-07  Score=88.28  Aligned_cols=175  Identities=15%  Similarity=0.202  Sum_probs=131.1

Q ss_pred             hhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHH-hhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016699           58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQV  136 (384)
Q Consensus        58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~-~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~  136 (384)
                      ..++..+++..+..+.+..--..|+.+    +++|.. |+.+.+   |.   ..+..+|   ......+++|...+..++
T Consensus        26 ~~~~kL~Ke~K~Y~dav~~m~~sq~~~----se~l~e~Y~p~~~---g~---~~~~~~~---~~~d~~~~dl~~~lv~~v   92 (211)
T cd07611          26 TEGTRLQRELRAYLAAIKGMQEASKKL----TESLHEVYEPDWY---GR---DDVKTIG---EKCDLLWEDFHQKLVDGA   92 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCccc---cc---chHHHHH---hhHHHHHHHHHHHHHHHH
Confidence            456778888888888866555666665    444443 333321   11   1122222   445568888888898889


Q ss_pred             chHHHHHhcCCChHHHH-HHHHH------HHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHH
Q 016699          137 AEPLRAMVLGAPLDDAR-HLAQR------YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEV  209 (384)
Q Consensus       137 l~PL~~~~~~~~lk~~~-~~~k~------y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~  209 (384)
                      |.|+.+|+..  +.+|+ ..+||      ||+.|+.++.                  .+.|.      ...+.||..||.
T Consensus        93 l~P~~~~~s~--f~~I~~~I~KR~hKllDYD~~r~~~~k------------------L~~k~------~kDe~KL~kAe~  146 (211)
T cd07611          93 LLTLDTYLGQ--FPDIKNRIAKRSRKLVDYDSARHHLEA------------------LQTSK------RKDEGRIAKAEE  146 (211)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHH------------------Hhccc------cccHHHHHHHHH
Confidence            9999999998  78998 55554      7777777777                  22221      113469999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          210 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       210 k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      .++.++..++.|+.+....++.+.+-+..++..++.+|+.+|..||..+..+-.+|...|..
T Consensus       147 el~~Ak~~ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~~  208 (211)
T cd07611         147 EFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMTK  208 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999888888889999999999999999999999888887753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit

>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]

Probab=98.91  E-value=2.6e-10  Score=113.70  Aligned_cols=61  Identities=28%  Similarity=0.505  Sum_probs=56.5

Q ss_pred             CCCcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          314 AMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       314 ~~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ......|.|+|.|.+++++||.|..||+|.|++...+|||.|..+|..|+||+|||..+..
T Consensus        97 q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~  157 (627)
T KOG4348|consen   97 QPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPT  157 (627)
T ss_pred             CccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCC
Confidence            3455789999999999999999999999999999999999999999999999999988753

>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules

Probab=98.87  E-value=5.3e-07  Score=85.38  Aligned_cols=226  Identities=16%  Similarity=0.215  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHh-hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhH
Q 016699            9 TKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTK   87 (384)
Q Consensus         9 ~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~   87 (384)
                      +|++.+.--++|.+.+++|..+   -+-+|+--.|+. +=+.|+....       .-+.+++.++.|...=+.-...-..
T Consensus         3 ~k~~~~~~~tkq~~~e~~g~~~---~~~~it~D~eL~~kle~l~~~~~-------~y~~L~~~~~~~~~~l~~l~q~q~~   72 (229)
T PF06456_consen    3 KKMKSTYKCTKQMVSEKLGKKE---DSRAITVDDELDAKLELLRDTQR-------TYRGLLKHARAYQNRLQALSQTQKE   72 (229)
T ss_dssp             ------------------------------CHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHcCccc---ccchhhcchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777778999999999333   223444334544 4333333333       3334556666554332222222237


Q ss_pred             HHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 016699           88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE  167 (384)
Q Consensus        88 l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele  167 (384)
                      ||+.+...|...+   .-.+|.+...+|++++.+++....++..+ ..|+.-|..|+.. -+.|.....++|+..|-|..
T Consensus        73 lg~~f~~~~~~e~---~~~l~~~f~~~~~~~~~~~~~~~~L~~~l-~~~~~~l~Tf~~k-aI~DT~~Tik~ye~aR~EY~  147 (229)
T PF06456_consen   73 LGDFFAELGVREK---SPALGEEFSANGEAQRSLAKQGETLLKAL-KRFLSDLNTFRNK-AIPDTLLTIKKYEDARFEYD  147 (229)
T ss_dssp             HHHHHHHHHH--H----CCGHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999432   22599999999999999999999998884 6789999999999 59999988899999999999


Q ss_pred             HhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          168 AQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAM  247 (384)
Q Consensus       168 ~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~  247 (384)
                      +           =|++++.....  +.+...-...+++.++..|+++++.++.|-.++..-|.-++..+-++...+|..|
T Consensus       148 a-----------y~~~lke~~~e--~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~  214 (229)
T PF06456_consen  148 A-----------YRLWLKEMSDE--LDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLF  214 (229)
T ss_dssp             H-----------HHHHHHHHH----TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-----------HHHHHHHhhcc--cCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9           88888765433  2233334456899999999999999999987888777777777777778899999


Q ss_pred             HHHHHHHHHHHHHHH
Q 016699          248 VEAERTYHQRVLQIL  262 (384)
Q Consensus       248 veAql~Yh~q~~~iL  262 (384)
                      ..+...||..|...|
T Consensus       215 ~~al~~y~~~~~~~l  229 (229)
T PF06456_consen  215 QNALAAYFSGNAQAL  229 (229)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHhhC
Confidence            999999999998765

The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]

Probab=98.86  E-value=2.1e-09  Score=110.45  Aligned_cols=58  Identities=33%  Similarity=0.574  Sum_probs=51.5

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEeCCeeeEecCCCeeecc
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ....|.+-|||-+.+-.||||+.||+|.++...  |.|||+|+.+|+.||||++||+.-.
T Consensus       804 ~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~  863 (865)
T KOG2996|consen  804 VVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD  863 (865)
T ss_pred             eeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence            445678889999999999999999999999874  5799999999999999999998643

>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1

Probab=98.86  E-value=3.2e-07  Score=84.63  Aligned_cols=180  Identities=11%  Similarity=0.196  Sum_probs=133.3

Q ss_pred             hHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016699           63 FQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNT------LSKAALSYGRARAQMEKERGNLLKALGTQV  136 (384)
Q Consensus        63 ~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~------~g~al~~~g~a~~~l~~~~~~~~~~~~~~~  136 (384)
                      +.++|+|.+=+++..+..-.-+-..++..+...+-++-  ++..      .+.+|-+||.....|++.+..|+..+...+
T Consensus        17 ~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~i--gd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~   94 (207)
T cd07633          17 FIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFI--GDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLL   94 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888888776666666688888888888865  6666      999999999999999999999999999999


Q ss_pred             chHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHh--hhhccCCCCCchHHhHHHHHHHHHHH
Q 016699          137 AEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQ--AKVRETPGNPDLALKLDAAEVKLHDL  214 (384)
Q Consensus       137 l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~--~k~~e~~~~~~~~~kl~~ae~k~~e~  214 (384)
                      +.||.+|+.- |++.++..+|+||+...++++            .|+ +.-+  .|.++        .+++.|...+.-+
T Consensus        95 ~~~L~~F~Ke-di~~~Ke~KK~FdK~se~~~~------------aL~-k~a~~s~k~K~--------~e~eEA~~~L~~~  152 (207)
T cd07633          95 IKPLENFRKE-QIGFTKERKKKFEKDSEKFYS------------LLD-RHVNLSSKKKE--------SQLQEADLQVDKE  152 (207)
T ss_pred             HHHHHHHHHH-HHHHHHHHhhhhhhhhhHHHH------------HHH-HHhcccccCCc--------hHHHHHHHHHHHH
Confidence            9999999999 999999999999999999999            111 2211  12222        2677777776666


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          215 KSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       215 ~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      +..+.....+=.-....|.....==.|.-|.+|+.|+..|+++.+.++.++.
T Consensus       153 r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~  204 (207)
T cd07633         153 RQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFL  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence            6654433222111111221111111177899999999999999999988763

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1

Probab=98.86  E-value=1.6e-07  Score=86.76  Aligned_cols=182  Identities=18%  Similarity=0.279  Sum_probs=122.3

Q ss_pred             HhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcC
Q 016699           67 IVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG  146 (384)
Q Consensus        67 i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~  146 (384)
                      |+|.+-+++..|...+++-+.+.+.+.+.|..+-+.++...|.|+.+|+...+.|......++.++...+..||.+|+.+
T Consensus        21 l~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~dd~~i~~a~~kfs~~~~El~~~~k~L~~~~~~~v~~~L~~flK~  100 (215)
T cd07641          21 VKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFLSRDNPDLGTAFVKFSTLTKELSTLLKNLLQGLSHNVIFTLDSLLKG  100 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444446677777777777777777777777722377789999999999999999999999999999999999999999


Q ss_pred             CChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHH---HHHhhhhccCCC----CCchHHhHHHHHHHHHHHHHHH
Q 016699          147 APLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV---SKRQAKVRETPG----NPDLALKLDAAEVKLHDLKSNM  218 (384)
Q Consensus       147 ~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~---kkr~~k~~e~~~----~~~~~~kl~~ae~k~~e~~~~~  218 (384)
                       |+|.++ ..+|.+|+....+|+           .-.-.   +|...|-.+-.+    +.|....+.....-|+-..=.+
T Consensus       101 -Dlr~~K~d~KK~FdK~~kDye~-----------k~~K~ek~~r~~~K~~e~~r~e~~~~Eaa~~l~~~Rr~Fq~~a~dY  168 (215)
T cd07641         101 -DLKGVKGDLKKPFDKAWKDYET-----------KFTKIEKEKREHAKQHGMIRTEITGAEIAEEMEKERRLFQLQMCEY  168 (215)
T ss_pred             -HhhhhhHHHHhHHHHHHHHHHH-----------HHHHHHhhhhhhcCcccchhccccchhHHHHHHHHHHHHHHHHHHH
Confidence             999999 999999999999999           33111   111122111100    1122222322222222221111


Q ss_pred             HHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          219 AILGKEAAAAMAAVESQQQRL-TLQRLIAMVEAERTYHQRVLQILDQLEGE  268 (384)
Q Consensus       219 ~~L~~e~~~~~~~ve~qqq~~-~l~~L~a~veAql~Yh~q~~~iL~qL~~e  268 (384)
                      -+-.+       .+... +++ .++.|..|+.||.+|+++....+++|..=
T Consensus       169 llqin-------~iq~K-k~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py  211 (215)
T cd07641         169 LIKVN-------EIKTK-KGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQY  211 (215)
T ss_pred             HHHHH-------HHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            10000       11111 122 27899999999999999999999888653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar

>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]

Probab=98.83  E-value=5.1e-09  Score=104.43  Aligned_cols=56  Identities=32%  Similarity=0.514  Sum_probs=53.3

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      -+++++|||++..++||+|.+|-+|.|+.++|+|||+|-.+|..|+||-|||+.+.
T Consensus       424 EkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  424 EKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence            47899999999999999999999999999999999999999999999999998764

>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]

Probab=98.79  E-value=4.2e-09  Score=105.39  Aligned_cols=55  Identities=31%  Similarity=0.542  Sum_probs=51.7

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEE--EeCCeeeEecCCCeee
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEG--ECKGKAGWFPFGYIER  371 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G--~~~G~~G~fP~~YVe~  371 (384)
                      ...++|||.|.+++++||-|..||+|.|++++|+||+.|  ++.|..|.||-|||+.
T Consensus       432 ~l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  432 PLKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             cccceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence            345899999999999999999999999999999999999  7899999999999975

>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3

Probab=98.76  E-value=1.6e-06  Score=79.43  Aligned_cols=174  Identities=18%  Similarity=0.239  Sum_probs=123.8

Q ss_pred             cccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH
Q 016699           74 YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR  153 (384)
Q Consensus        74 ~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~  153 (384)
                      +...|-.++|+.+.+.+.+-+.|+..-+.++.++|.+.++++-..+.+...-.++..++.+-+.=||..|+.+ |+|+.+
T Consensus        28 i~~sg~~hv~ne~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK~-dlr~~K  106 (213)
T cd07640          28 IHNSGLNHVENEEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLKG-QLRDGR  106 (213)
T ss_pred             HHHhhHHHHhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHH-Hhhhhh
Confidence            5567888899888899999999887665566889999999999999999999999999999999999999999 999999


Q ss_pred             -HHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhh---hhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 016699          154 -HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQA---KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAM  229 (384)
Q Consensus       154 -~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~---k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~  229 (384)
                       ..+|.+++....+|+           ...  |..+.   +.++. +-.+  -+...+.+.++..+..+...   +-..+
T Consensus       107 ~D~KK~FeK~skDyE~-----------kl~--K~ak~~r~k~~~~-g~~~--~e~eEaae~l~~eRr~Fql~---acdYl  167 (213)
T cd07640         107 LESKKQMEKAWKDYEA-----------KIG--KLEKERREKQKQH-GLIR--LDMTDTAEDMQRERRNFQLH---MCEYL  167 (213)
T ss_pred             HHHHhHHHHHHHHHHH-----------HHH--HHhccccccchhc-cccc--ccHHHHHHHHHHHHHHHHHH---HHHHH
Confidence             999999999999999           331  11111   11110 0000  12334444444444443322   11111


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          230 A---AVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG  267 (384)
Q Consensus       230 ~---~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~  267 (384)
                      .   .+...+--=.|+.|..|..||.+|+++....++++.-
T Consensus       168 lkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~p  208 (213)
T cd07640         168 LKAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGP  208 (213)
T ss_pred             HHHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1   1111111112889999999999999999999988764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran

>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]

Probab=98.74  E-value=8.9e-09  Score=104.14  Aligned_cols=57  Identities=26%  Similarity=0.496  Sum_probs=53.2

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeec
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR  372 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l  372 (384)
                      ....++|+|||++.++.|++|..+|+|+++...|+|||.|.. .|..|+||+|||+.+
T Consensus       426 ~~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  426 EPQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             cCCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            345789999999999999999999999999999999999998 999999999999875

>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins

Probab=98.69  E-value=3.1e-06  Score=79.93  Aligned_cols=185  Identities=17%  Similarity=0.192  Sum_probs=130.5

Q ss_pred             HHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHH-hhccCCCCCCChhHHHHHHHHHHHHHHH-HHHHHHH
Q 016699           52 RLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQME-KERGNLL  129 (384)
Q Consensus        52 ~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~-~g~e~~~~~~~~~g~al~~~g~a~~~l~-~~~~~~~  129 (384)
                      |+..-..+++.+++++..-.+.+......|..+    ++++.. |+...+  ++  .-...-.++.+.+.|. ....++.
T Consensus        19 ~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i----~~~l~~lY~p~~~--~~--~~~~~~~y~~~v~~l~~~~~~el~   90 (224)
T cd07591          19 RYRTMEKASTKLQKEAKGYLDSLRALTSSQARI----AETISSFYGDAGD--KD--GAMLSQEYKQAVEELDAETVKELD   90 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCC--cc--HhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444566778888888888876555555554    555554 444443  21  1122234555555554 3445566


Q ss_pred             HHHhhhhchHHHHHhcCCChHHHH-HHHHH------HHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHH
Q 016699          130 KALGTQVAEPLRAMVLGAPLDDAR-HLAQR------YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLAL  202 (384)
Q Consensus       130 ~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~------y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~  202 (384)
                      ..+...++.|+..++..  +++++ ..+||      ||+.|+.++.                  .+.|...      .+.
T Consensus        91 ~~~~~~V~~Pl~~~~~~--~~~i~k~IkKR~~KllDYD~~~~k~~k------------------l~~K~~k------d~~  144 (224)
T cd07591          91 GPYRQTVLDPIGRFNSY--FPEINEAIKKRNHKLLDYDAARAKVRK------------------LIDKPSE------DPT  144 (224)
T ss_pred             hHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhhHhhHHHHHHHHHH------------------HHhcccC------CHH
Confidence            66888999999999987  78888 44443      6666666666                  1112111      135


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          203 KLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEML  270 (384)
Q Consensus       203 kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~  270 (384)
                      +|..||.+++++++.+..|+.+....++.+-+-+..+....+.+|+..|+.||.+....|.++..-+.
T Consensus       145 kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~  212 (224)
T cd07591         145 KLPRAEKELDEAKEVYETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLD  212 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            89999999999999999999999999998877777788889999999999999999999988877654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.64  E-value=1.2e-08  Score=108.14  Aligned_cols=59  Identities=24%  Similarity=0.487  Sum_probs=54.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCC-eeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG-KAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G-~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|||||.+..++||+|.+|-+|+++++...|||.|..+| ..||||+|||+.+.+.
T Consensus       774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~  833 (1267)
T KOG1264|consen  774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA  833 (1267)
T ss_pred             chhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence            4679999999999999999999999999999999999999976 5799999999998763

>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=98.62  E-value=1.7e-08  Score=95.69  Aligned_cols=61  Identities=15%  Similarity=0.331  Sum_probs=54.7

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEee--cCCCeeEEEe-CCeeeEecCCCeeeccCCCch
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGEC-KGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~--~d~gW~~G~~-~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      ..+.|||+|++.++.||+|.+||.+.|++.  .|++||.++. .|+.|+||.|||+++.+-|.+
T Consensus       192 ~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~t  255 (379)
T KOG4226|consen  192 HVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPST  255 (379)
T ss_pred             EEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCccc
Confidence            457899999999999999999999999987  5889999998 999999999999999765543

>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis

Probab=98.59  E-value=1e-05  Score=75.62  Aligned_cols=158  Identities=20%  Similarity=0.182  Sum_probs=102.1

Q ss_pred             HHHHHHHHhhccCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHH----HHHH
Q 016699           87 KLSEDSRKYGSDNTCTSG--NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLA----QRYD  160 (384)
Q Consensus        87 ~l~~~m~~~g~e~~~~~~--~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~----k~y~  160 (384)
                      -+.+++.+.|.-...+++  -++|.+|.++...++.|+.-.+.|...+..++|.||..-++- .-|.+..+-    |.|.
T Consensus        47 ~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~-wkk~~~~ldKd~~k~~k  125 (231)
T cd07643          47 AFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEE-WKKVANQLDKDHAKEYK  125 (231)
T ss_pred             HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            456677666654443344  379999999999999999999999999999999999999996 445553444    4589


Q ss_pred             HHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016699          161 RMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT  240 (384)
Q Consensus       161 ~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~  240 (384)
                      ++|+++..           +--|.-|.++|.|...  ......+..|.....+-+...+.+.+.+.+...--|+.+.-.+
T Consensus       126 k~R~elKk-----------~~~dt~klqkk~rKg~--~~~~~~ldsa~~dvn~k~~~lEe~ek~alR~aLiEER~Rfc~F  192 (231)
T cd07643         126 KARQEIKK-----------KSSDTIRLQKKARKGK--GDLQPQLDSAMQDVNDKYLLLEETEKKAVRNALIEERGRFCTF  192 (231)
T ss_pred             HHHHHHHH-----------HhhhHHHHHHHHhccC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999987           6667755555544432  2222345555443333222222222222222212244455556


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 016699          241 LQRLIAMVEAERTYHQRV  258 (384)
Q Consensus       241 l~~L~a~veAql~Yh~q~  258 (384)
                      +++|..+++.+.+-....
T Consensus       193 vs~l~pVl~~e~~ml~E~  210 (231)
T cd07643         193 VSFLKPVLDEEISMLGEV  210 (231)
T ss_pred             HHHHhHHHHHHHHHHhhH
Confidence            778888888777665544

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)

Probab=98.57  E-value=4.3e-05  Score=71.57  Aligned_cols=164  Identities=19%  Similarity=0.225  Sum_probs=110.7

Q ss_pred             hhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHH
Q 016699           85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ  164 (384)
Q Consensus        85 ~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~  164 (384)
                      ++-||..+..||+.    .+..++++|..++++...|+..+..-...+...|++||..|..-  ++-++.-.|.....|.
T Consensus        41 ~~~fak~~~~la~~----E~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l--~k~~k~~~K~~~~ar~  114 (211)
T cd07598          41 GDELAKSINAYADT----ENPSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGTI--CKHARDDLKNTFTARN  114 (211)
T ss_pred             HHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            34678888888874    35679999999999999999999999999999999999999986  7888733343444444


Q ss_pred             HHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          165 EAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRL  244 (384)
Q Consensus       165 ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L  244 (384)
                      .+-.           ++.-+    .|.+..  ++.+..++..||.+++..+..+...++....-|...+.+.-.-.=..|
T Consensus       115 ~~~~-----------~~~~l----eklk~~--~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~K~~l  177 (211)
T cd07598         115 KELK-----------QLKQL----EKLRQK--NPSDRQIISQAESELQKASVDANRSTKELEEQMDNFEKQKIRDIKTIF  177 (211)
T ss_pred             HHHH-----------HHHHH----HHHHhc--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444           33112    111111  112223444556665555555444444455555545443322223478


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          245 IAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       245 ~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      .+|+..++.||.++..++..+...+.+
T Consensus       178 ~~fv~~~m~~~~kale~~~~~~~~~~~  204 (211)
T cd07598         178 SDFVLIEMLFHAKALEVYTAAYQDIQN  204 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            899999999999999999998887764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1

Probab=98.55  E-value=8.7e-06  Score=75.70  Aligned_cols=162  Identities=12%  Similarity=0.161  Sum_probs=110.6

Q ss_pred             HHHHHHHHhhc-cCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHH
Q 016699           87 KLSEDSRKYGS-DNTC-TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ  164 (384)
Q Consensus        87 ~l~~~m~~~g~-e~~~-~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~  164 (384)
                      .++..+..|-. .|+| +.|...+.+|-+|+.+...|+..+..|...+...++.||.+|+.. |++.++..+|+||+...
T Consensus        41 ~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~~q~~~sl~~pL~~F~ke-dL~~~Ke~KK~FdK~Se  119 (215)
T cd07631          41 LTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKER-DLKEILTLKEVFQIASN  119 (215)
T ss_pred             HHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh
Confidence            67888888872 2443 466679999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          165 EAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRL  244 (384)
Q Consensus       165 ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L  244 (384)
                      ++++-++=-.+||+.++           ++.-..+.+..+..+...|....=.+.       -.+..++....=-.|..|
T Consensus       120 ~~d~Al~K~a~lsk~K~-----------~E~~~eea~~~v~~tR~~F~~~aLdYv-------~qLn~lQ~rKKfefLe~l  181 (215)
T cd07631         120 DHDAAINRYSRLSKRRE-----------NEKVKYEVTEDVYTSRKKQHQTMMHYF-------CALNTLQYKKKIALLEPL  181 (215)
T ss_pred             HHHHHHHHHhcCCCCCC-----------chHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            99992222222222211           110001123345556666665442211       111122221111127889


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHH
Q 016699          245 IAMVEAERTYHQRVLQ-ILDQLEG  267 (384)
Q Consensus       245 ~a~veAql~Yh~q~~~-iL~qL~~  267 (384)
                      .+|+.|+..|+++.++ +..++..
T Consensus       182 Ls~m~A~~tFFhqG~e~L~~dl~~  205 (215)
T cd07631         182 LGYMQAQISFFKMGSENLNEQLEE  205 (215)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999 4334443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo

>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2

Probab=98.52  E-value=2e-05  Score=72.92  Aligned_cols=162  Identities=13%  Similarity=0.163  Sum_probs=110.3

Q ss_pred             HHHHHHHHhhcc-CC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHH
Q 016699           87 KLSEDSRKYGSD-NT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ  164 (384)
Q Consensus        87 ~l~~~m~~~g~e-~~-~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~  164 (384)
                      .|+.-+..|... |+ |.+|...+.||.+|+.+...|...+..|+..+...++.||.+|+.. |++.++..+|.||+...
T Consensus        41 ~~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~Ke-Dl~~vKe~KK~FdK~Se  119 (215)
T cd07632          41 QLSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREK-DLTEVSTLKDLFGIASN  119 (215)
T ss_pred             HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhH
Confidence            567777888763 33 3577789999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHhhhhhccCCcccHHHHHHHhhhhccC-CCCCchHHhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 016699          165 EAEAQLVISSSLKPSQAIEVSKRQAKVRET-PGNPDLALKLDAAEVKLHDLKSNMA-ILGKEAAAAMAAVESQQQRLTLQ  242 (384)
Q Consensus       165 ele~~~~~~~~l~~~rrld~kkr~~k~~e~-~~~~~~~~kl~~ae~k~~e~~~~~~-~L~~e~~~~~~~ve~qqq~~~l~  242 (384)
                      ++++-++=-+.||+           | |+. ...+++...+..+..+|....=.+- .|+.=..+.  ..+=      |.
T Consensus       120 ~~d~AL~Knaqlsk-----------k-K~~E~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RK--Kfei------LE  179 (215)
T cd07632         120 EHDLSMAKYSRLPK-----------K-RENEKVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRK--RVAM------LE  179 (215)
T ss_pred             HHHHHHHHHhhCCc-----------C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH------HH
Confidence            99991111111111           1 111 0011122235555555555332211 111001111  1222      77


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          243 RLIAMVEAERTYHQRVLQILDQLEGEM  269 (384)
Q Consensus       243 ~L~a~veAql~Yh~q~~~iL~qL~~eL  269 (384)
                      -|.+|+.|+.+|+++.++++.+-.+..
T Consensus       180 ~mLsym~Aq~TFFhQGyeL~~~~~~~~  206 (215)
T cd07632         180 PMLGYTHGQINFFKKGAELFSKKLDSF  206 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999987654443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac

>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]

Probab=98.50  E-value=3.7e-08  Score=91.29  Aligned_cols=62  Identities=19%  Similarity=0.400  Sum_probs=56.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccCCCch
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      ...++++|||.+.++++|.|++||++.|+.+..+.||..+. .|+.|++|.+||+.+.+..++
T Consensus       124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~  186 (293)
T KOG4792|consen  124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASAS  186 (293)
T ss_pred             hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcc
Confidence            45688999999999999999999999999999999999998 999999999999998765543

>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes

Probab=98.41  E-value=6.9e-05  Score=69.57  Aligned_cols=183  Identities=13%  Similarity=0.174  Sum_probs=141.6

Q ss_pred             hHHHHhhhhcccccCCC--cccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHH
Q 016699           63 FQRDIVRGVEGYIVTGS--KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPL  140 (384)
Q Consensus        63 ~~~~i~r~~e~~~~~~~--~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL  140 (384)
                      .-+.+++.++.|...=+  .|.+.  .||+.+...|...+  +- . |.+...+|++++-+++....++..+. -|+.-|
T Consensus        17 ~y~~Ll~~~~~~~~~~~~l~q~q~--~lG~~f~~l~~~~~--~~-a-~~~f~~~~~a~r~~~k~g~~ll~~l~-~~~~~l   89 (203)
T cd00011          17 KYESVLQLGRALTAHLYSLSQTQH--ALGDAFADLSQKDP--EL-A-GEEFGYNAEAQKLLCKNGETLLGAVN-FFVSSI   89 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCC--cH-H-HHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHH
Confidence            45556666666544322  23444  79999999999876  21 2 89999999999999999999988775 588889


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHH
Q 016699          141 RAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAI  220 (384)
Q Consensus       141 ~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~  220 (384)
                      ..|+.. -+.|.....++|...|-|..+           =|+|++........+  ..-...+++.++..+++.++.++.
T Consensus        90 ~T~~~k-ai~DT~lTI~~ye~aR~EY~a-----------~~l~~ke~~~e~~~~--~~~~~~k~r~~q~~~~~~k~kf~k  155 (203)
T cd00011          90 NTLVTK-AIEDTLLTVKQYEAARLEYDA-----------YRLDLKELSLEPRDD--TAGTRGRLRSAQATFQEHRDKFEK  155 (203)
T ss_pred             HHHHhh-hcchHHHHHHHHHHHHHhHHH-----------HHHHHHHhcccCCcc--cccchHHHHHHHHHHHHHHHHHHH
Confidence            999999 599999888999999999999           888887553332211  111234788888888888888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          221 LGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       221 L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      |-.++..-+--++...-++...+|..|..|...||..|...|++..
T Consensus       156 Lr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~~  201 (203)
T cd00011         156 LRGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQTL  201 (203)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            8777776666667766777788999999999999999999998764

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.39  E-value=2.5e-07  Score=94.71  Aligned_cols=57  Identities=23%  Similarity=0.422  Sum_probs=51.0

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeec---CCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVT---NNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~---d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      .+-|+|||+++.++||+|.+||-++|+.+.   +.+||-++.+|+.|+||.||+-...++
T Consensus       685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPri  744 (752)
T KOG0515|consen  685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPRI  744 (752)
T ss_pred             eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCccc
Confidence            478999999999999999999999999984   447999999999999999999776544

>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]

Probab=98.37  E-value=3e-07  Score=84.09  Aligned_cols=55  Identities=29%  Similarity=0.506  Sum_probs=51.3

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l  372 (384)
                      ...+++|||.+++.+|.+|.-||.|.-+...|+||..|.+  +|..|..|.||||.+
T Consensus       208 ktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  208 KTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             ccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence            5689999999999999999999999999999999999987  999999999999864

>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

Probab=98.36  E-value=7.5e-05  Score=69.14  Aligned_cols=186  Identities=14%  Similarity=0.185  Sum_probs=139.5

Q ss_pred             hhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 016699           60 GKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEP  139 (384)
Q Consensus        60 ~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~P  139 (384)
                      +...-+.|++.++.|...=+.-+..-..||+.+...|...+     .+-.+...+|++++-|+..-..++..+ .-|+.-
T Consensus        14 ~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p-----~l~~af~~~aet~k~l~kng~~Ll~al-~~f~s~   87 (201)
T cd07660          14 TQRKYESVLRLARALASQFYQMLQTQKALGDAFADLSQKSP-----ELQEEFTYNAETQKLLCKNGETLLGAL-NFFVSS   87 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHH
Confidence            33355567777777654433223333379999999999876     467899999999999999988777665 468888


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHH
Q 016699          140 LRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMA  219 (384)
Q Consensus       140 L~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~  219 (384)
                      |..++.. -+.|....-++|+..|-|..+           =|+|+....    .++...+.-.+.+.++.+++++++.++
T Consensus        88 l~T~~~k-ai~DT~lTI~~ye~aR~EYda-----------yr~D~ee~~----~~~~~~~~l~r~~~~q~~~~~~k~kf~  151 (201)
T cd07660          88 LNTLVNK-TMEDTLMTVKQYESARIEYDA-----------YRNDLEALN----LGPRDAATSARLEEAQRRFQAHKDKYE  151 (201)
T ss_pred             HHHHHHh-hccHHHHHHHHHHhhhHhHHH-----------HhccHHHcc----cCCCccchHhhHHHHHHHHHHHHHHHH
Confidence            9999998 588988888899999999999           777765322    223233344467778888888888877


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          220 ILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG  267 (384)
Q Consensus       220 ~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~  267 (384)
                      .|-+.+...|--++...-++...||.-|..|...||..|..+|++.-.
T Consensus       152 KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L~~~~~  199 (201)
T cd07660         152 KLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQLEQTLK  199 (201)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            776667777666666666666779999999999999999999887543

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im

>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=98.35  E-value=3.2e-07  Score=84.44  Aligned_cols=57  Identities=23%  Similarity=0.427  Sum_probs=52.8

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ....+.++|||++..+++|.|..||+|.|+...+..||.|.+.|+.|+||++||...
T Consensus       162 ~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~  218 (222)
T KOG3601|consen  162 TNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS  218 (222)
T ss_pred             cchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence            345689999999999999999999999999999999999999999999999998654

>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=1.5e-07  Score=90.87  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=49.0

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeec-----CCCeeEEEe--CCeeeEecCCCeeeccC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT-----NNGWAEGEC--KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-----d~gW~~G~~--~G~~G~fP~~YVe~l~~  374 (384)
                      ..|+|+|||.+.++.||+|++||++.|..+.     +..||....  +|..||||.|||+.+..
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence            5699999999999999999999999998763     445777765  67889999999998865

>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1

Probab=98.26  E-value=0.00016  Score=66.94  Aligned_cols=190  Identities=13%  Similarity=0.192  Sum_probs=124.6

Q ss_pred             hhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016699           58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVA  137 (384)
Q Consensus        58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l  137 (384)
                      +.|+...+.|++.+..++..=+.-+..-.-||+.+...|.--+   ...+..+...+|++++.|++.-..+++.++ -|+
T Consensus        12 ~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~---~p~l~eeF~~~ae~hR~l~k~G~~ll~ai~-~~~   87 (215)
T cd07659          12 EQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREP---QPAASEAFTKFGEAHRSIEKFGIELLKTLK-PML   87 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---ChhHHHHHHHhHHHHHHHHHhHHHHHHHhH-HHH
Confidence            3344445555555555544333333333468999999888632   235889999999999999999999999875 689


Q ss_pred             hHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHH------
Q 016699          138 EPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKL------  211 (384)
Q Consensus       138 ~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~------  211 (384)
                      .-|.+++.. -+.|..-..++|...|-|..+           =|+|++-....-.+.....+..-.+..+.-.|      
T Consensus        88 s~l~T~l~K-aipDT~lTikkY~~ar~EY~a-----------yc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRc  155 (215)
T cd07659          88 SDLGTYLNK-AIPDTKLTIKKYADVKFEYLS-----------YCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRC  155 (215)
T ss_pred             HHHHHHHHh-hCchHHHHHHHHHHHHHHHHH-----------HHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHH
Confidence            999999999 599999888889999999999           88888644221111000001111222222222      


Q ss_pred             -HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          212 -HDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD  263 (384)
Q Consensus       212 -~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~  263 (384)
                       ++.+..++.|-.++..-|.-+|...-..-..+|..|+.|...||..|..++.
T Consensus       156 rq~~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~  208 (215)
T cd07659         156 RQEARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLK  208 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             4444444444344555555455443334467999999999999999998863

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th

>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]

Probab=98.24  E-value=7.1e-05  Score=72.10  Aligned_cols=56  Identities=23%  Similarity=0.240  Sum_probs=52.5

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ...|.++|+|++..++||....||++++-+...+|||.|+..|..|.||+.||+..
T Consensus       363 k~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  363 KILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA  418 (421)
T ss_pred             HHHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence            35799999999999999999999999999999999999999999999999999864

>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]

Probab=98.24  E-value=1.4e-07  Score=97.95  Aligned_cols=60  Identities=40%  Similarity=0.677  Sum_probs=55.5

Q ss_pred             CCcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccC
Q 016699          315 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       315 ~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~  374 (384)
                      -+.+.+.++..|.+..++||+|..+|++.|+.+.++||++|++  +|..||||..||+.|..
T Consensus       606 ~dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~  667 (695)
T KOG3523|consen  606 WDCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN  667 (695)
T ss_pred             cCCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence            3567789999999999999999999999999999999999998  89999999999998864

>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]

Probab=98.18  E-value=5.6e-06  Score=77.05  Aligned_cols=61  Identities=36%  Similarity=0.413  Sum_probs=53.9

Q ss_pred             CCCcceeEeeccC--CCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          314 AMGYFLGEVVHPY--QAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       314 ~~~~~~a~alydy--~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      +..+.+|+|+++-  .+-+...|.+.+||+|.|...+-+|-|+|+++|+.|.||..||+....
T Consensus       224 ~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~  286 (293)
T KOG4792|consen  224 QNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDV  286 (293)
T ss_pred             cCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeecc
Confidence            4456678999884  567888999999999999999999999999999999999999998754

>KOG1843 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=1.7e-06  Score=86.41  Aligned_cols=53  Identities=25%  Similarity=0.539  Sum_probs=49.3

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEeCCeeeEecCCCeee
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIER  371 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~~G~~G~fP~~YVe~  371 (384)
                      .+.++|+|.++..++|+|.+||+|+++.+.  .++||.|..+|..|+||.|||..
T Consensus       418 ~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  418 IATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             eeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence            799999999999999999999999999885  45899999999999999999964

>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins

Probab=98.07  E-value=0.0011  Score=62.03  Aligned_cols=134  Identities=14%  Similarity=0.148  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHH-------HHHHHHHHHHhhhhhccCCcccH
Q 016699          109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR-------YDRMRQEAEAQLVISSSLKPSQA  181 (384)
Q Consensus       109 ~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~-------y~~~r~ele~~~~~~~~l~~~rr  181 (384)
                      .....+..+.+.|...-..-+..+...++.|+..+..-  ++.++.+.++       ||+.|..++.           . 
T Consensus        71 ~~~~~y~~~~~~l~~~~~~~l~~i~~~V~~P~~~~~~~--~~~i~k~IkKR~~k~lDyd~~~~k~~k-----------~-  136 (216)
T cd07599          71 ARLSRYVKALEELKKELLEELEFFEERVILPAKELKKY--IKKIRKTIKKRDHKKLDYDKLQNKLNK-----------L-  136 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHH-----------H-
Confidence            45566777777776666666778899999999999997  8888844432       4444444433           1 


Q ss_pred             HHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          182 IEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQI  261 (384)
Q Consensus       182 ld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~i  261 (384)
                           .+.| .  ..+.....+|..|+.+|+++++.+..|+.+....++.+-+-...+.-..+.+|+--|++|+...+..
T Consensus       137 -----~~~k-~--~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~  208 (216)
T cd07599         137 -----LQKK-K--ELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHEY  208 (216)
T ss_pred             -----HhcC-C--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 1111 1  1233456799999999999999999999999998887766555566668888999999999888777


Q ss_pred             HHH
Q 016699          262 LDQ  264 (384)
Q Consensus       262 L~q  264 (384)
                      +..
T Consensus       209 l~~  211 (216)
T cd07599         209 LQE  211 (216)
T ss_pred             HHh
Confidence            643

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=98.05  E-value=0.00099  Score=61.20  Aligned_cols=198  Identities=13%  Similarity=0.151  Sum_probs=113.0

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 016699           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERG  126 (384)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~  126 (384)
                      ...+++|........+-...|++...++-.       ....||.++...+..... .+..++.++..+|++...+.....
T Consensus        10 ~~~v~~le~~l~~l~~~~~~~~k~~~~l~~-------~~~elg~~~~~Ls~~e~~-~~~~l~~~~~~~~~~~~~~~~~~~   81 (218)
T cd07596          10 KDYILKLEEQLKKLSKQAQRLVKRRRELGS-------ALGEFGKALIKLAKCEEE-VGGELGEALSKLGKAAEELSSLSE   81 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhccc-cchhhHHHHHHHHHHHHHHHHHHH
Confidence            344445554444433444445555443211       111467777777765430 112599999999999999999999


Q ss_pred             HHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHH-HH--HhhhhccCCC-----CC
Q 016699          127 NLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEV-SK--RQAKVRETPG-----NP  198 (384)
Q Consensus       127 ~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~-kk--r~~k~~e~~~-----~~  198 (384)
                      +........|++||..++.-  +..++....+.+.+...++.           -.-++ ++  +..|.+..+.     ..
T Consensus        82 ~~~~~~~~~~~e~L~~y~~~--~~s~k~~l~~R~~~~~~~~~-----------~~~~l~~k~~~~~kl~~~~~~~~~ki~  148 (218)
T cd07596          82 AQANQELVKLLEPLKEYLRY--CQAVKETLDDRADALLTLQS-----------LKKDLASKKAQLEKLKAAPGIKPAKVE  148 (218)
T ss_pred             HHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhcCCCchhHHH
Confidence            99999999999999999874  66666444443344444433           11122 11  1112111110     11


Q ss_pred             chHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          199 DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL  265 (384)
Q Consensus       199 ~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL  265 (384)
                      ....++..++...+.++..+..+.......+...+.....-.-..|..|++.+..|++.+..++..+
T Consensus       149 ~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~  215 (218)
T cd07596         149 ELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESL  215 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1223444445555555444444433333333333332222234578899999999999999988765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=98.02  E-value=0.0017  Score=60.95  Aligned_cols=159  Identities=14%  Similarity=0.244  Sum_probs=92.8

Q ss_pred             HHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHH------HH
Q 016699           88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQR------YD  160 (384)
Q Consensus        88 l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~------y~  160 (384)
                      ||..+...|.--   .+..++.+|..+|++...+..........-...|.+||+.|+--  +.-++ .+..|      |+
T Consensus        64 ~~~~~~~la~~E---~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~--~~svk~~l~~R~~~~~~~~  138 (236)
T PF09325_consen   64 FGSSFSQLAKSE---EEKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRY--IESVKEALNRRDKKLIEYQ  138 (236)
T ss_pred             HHHHHHHhhccc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            455555555432   34569999999999999999999999999999999999998763  45554 22222      23


Q ss_pred             HHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCC-----CchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016699          161 RMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGN-----PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQ  235 (384)
Q Consensus       161 ~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~-----~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~q  235 (384)
                      .+-..+..           ++....    |....+.+     .....++..++.+.+.++..+..........+...+..
T Consensus       139 ~a~~~l~k-----------kk~~~~----kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~  203 (236)
T PF09325_consen  139 NAEKELQK-----------KKAQLE----KLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKE  203 (236)
T ss_pred             HHHHHHHH-----------HHHHHh----cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333           222221    11111101     11223344444444444444333333333332222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          236 QQRLTLQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       236 qq~~~l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      ...-.-..|..|++.+..|++++..++..+.
T Consensus       204 k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~  234 (236)
T PF09325_consen  204 KVKDFKSMLEEYAESQIEYQKKMLEAWETFL  234 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence            2222345899999999999999999988764

This is the C-terminal dimerisation domain [].

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]

Probab=98.02  E-value=8.4e-07  Score=89.99  Aligned_cols=59  Identities=27%  Similarity=0.471  Sum_probs=54.9

Q ss_pred             CCcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          315 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       315 ~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      .+...++|+.||...+++||.|+++|+|++++..|+-.|.|+.+|-+||||+.||+.++
T Consensus       546 ~~~krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvelld  604 (848)
T KOG2222|consen  546 TGAKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLD  604 (848)
T ss_pred             hhhHHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999875

>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30

Probab=97.92  E-value=0.0013  Score=60.95  Aligned_cols=148  Identities=17%  Similarity=0.210  Sum_probs=94.8

Q ss_pred             HHHHHHHhhccCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 016699           88 LSEDSRKYGSDNTC--TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (384)
Q Consensus        88 l~~~m~~~g~e~~~--~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~e  165 (384)
                      |+.++..||.-+..  ..+..++.+|-.+|.+..++.....++......+|++||+.|+.=  ..-++...++-+..+..
T Consensus        47 l~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y--~~svk~~l~~R~~~q~~  124 (200)
T cd07624          47 YFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLY--SDAVKDVLKRRDQFQIE  124 (200)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            45555555554331  233459999999999999999999999999999999999998764  34444333322333333


Q ss_pred             HHHhhhhhccCCcccHHHH-HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          166 AEAQLVISSSLKPSQAIEV-SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRL  244 (384)
Q Consensus       166 le~~~~~~~~l~~~rrld~-kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L  244 (384)
                      .+.           . .|. .+++.+         ...++..++.+|+.....+   ..|..+.    +...+.=.-..|
T Consensus       125 ~e~-----------~-~e~L~~k~~~---------l~~ev~~a~~~~e~~~~~~---~~E~~rF----~~~K~~d~k~~l  176 (200)
T cd07624         125 YEL-----------S-VEELNKKRLE---------LLKEVEKLQDKLECANADL---KADLERW----KQNKRQDLKKIL  176 (200)
T ss_pred             HHH-----------H-HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHH
Confidence            333           1 122 212111         3446777888888777652   2333322    222222224489


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 016699          245 IAMVEAERTYHQRVLQILDQL  265 (384)
Q Consensus       245 ~a~veAql~Yh~q~~~iL~qL  265 (384)
                      ..|++.+..|++++..++..+
T Consensus       177 ~~~a~~qi~~~~~~~~~We~~  197 (200)
T cd07624         177 LDMAEKQIQYYEQCLAAWEEV  197 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999887664

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein

Probab=97.92  E-value=0.00082  Score=62.19  Aligned_cols=176  Identities=13%  Similarity=0.109  Sum_probs=107.4

Q ss_pred             HHHHHHHHHhhh-hhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHH-HHHHH
Q 016699           48 QRLERLYISTRA-GKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ-MEKER  125 (384)
Q Consensus        48 ~~~e~l~~~~~~-~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~-l~~~~  125 (384)
                      ..+|+-|..... ++.+++++...++.+...-..+...   ....|.-|+.+.+   +. . .+.-.+..+... .....
T Consensus         8 d~~e~rF~~~e~~~~~l~kd~k~Y~~~~~~~~~~~~~~---~~~~~d~y~~~~~---~~-~-~~~~~~~~~~~~~~~~~~   79 (195)
T cd07589           8 DELEKKFGSLEKQVQLVVRNVELYLQHVQESVLVKVLA---LEVVLDLYPSNHP---RL-E-SKWERFRRVVRGISSKAL   79 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccCCCh---hh-H-HHHHHHHHHHHHHHHHHH
Confidence            334444444333 3455555555555432222223332   2333334554433   11 1 123344433333 35578


Q ss_pred             HHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhH
Q 016699          126 GNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKL  204 (384)
Q Consensus       126 ~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl  204 (384)
                      .++...+...++.||..++.-  ++.++ ..+|        =..           +.+||-+-+.+..          ++
T Consensus        80 ~e~~~~i~~~V~~Pl~~~~~~--~~~~~k~I~K--------R~~-----------KllDYdr~~~~~~----------k~  128 (195)
T cd07589          80 PEFKSRVRKLVIEPLSSLLKL--FSGPQKLIQK--------RYD-----------KLLDYERYKEKKE----------RG  128 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHH--------Hhh-----------hhccHHHHHHHHH----------hh
Confidence            899999999999999999987  78888 4444        233           4457744333321          24


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          205 DAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL  262 (384)
Q Consensus       205 ~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL  262 (384)
                      ..++.+++++++.+..|+......++.+-.-...+.-.+|.+|+..|.+||..+...+
T Consensus       129 ~k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~~~  186 (195)
T cd07589         129 GKVDEELEEAANQYEALNAQLKEELPKFNQLTAQLLETCLKSFVELQRDLYDTLLKRA  186 (195)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4577777888888888877788888877665566677799999999999999988765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.

>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2

Probab=97.87  E-value=0.011  Score=56.26  Aligned_cols=164  Identities=10%  Similarity=0.082  Sum_probs=100.1

Q ss_pred             HHHHHHHHhhc-cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCC-ChHHHH-HHHHH---HH
Q 016699           87 KLSEDSRKYGS-DNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGA-PLDDAR-HLAQR---YD  160 (384)
Q Consensus        87 ~l~~~m~~~g~-e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~-~lk~~~-~~~k~---y~  160 (384)
                      -+|.+|..-|. |.    ++.++++|..+|+++.+|......-...-.-.|.+||+.|+--. .+|.+. .|.+-   |+
T Consensus        61 efa~s~~~L~~~E~----~~~ls~~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~  136 (234)
T cd07664          61 AFAKSAAMLGNSED----HTALSRALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQ  136 (234)
T ss_pred             HHHHHHHHHHcCcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777776666 43    24699999999999999999999999999999999999987630 244444 44443   35


Q ss_pred             HHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016699          161 RMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT  240 (384)
Q Consensus       161 ~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~  240 (384)
                      ..-..|..           +|.-.-|.....+.+ ...+...+++.++.+-++.+..+..++.-....+...+..+..=.
T Consensus       137 ~a~~~L~k-----------kr~~~~Kl~~~~k~d-K~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~df  204 (234)
T cd07664         137 DAQVTLQK-----------KREAEAKLQYANKPD-KLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDF  204 (234)
T ss_pred             HHHHHHHH-----------HHHHHHHHhhcCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555           553322211111111 122344455655555555555544443333333332322222223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          241 LQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       241 l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      -..+..|++.+..|..++...+..+.
T Consensus       205 k~~l~~fles~ie~qke~ie~We~f~  230 (234)
T cd07664         205 KTVIIKYLESLVQTQQQLIKYWEAFL  230 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45788888899999988888877654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2

Probab=97.87  E-value=0.0083  Score=56.66  Aligned_cols=206  Identities=12%  Similarity=0.131  Sum_probs=119.8

Q ss_pred             CCCCcccccchHHHh--hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhH
Q 016699           31 YGGSDNVVTDEAELH--QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLS  108 (384)
Q Consensus        31 ~~~~~~~~~~e~e~~--~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g  108 (384)
                      |.-+|++..++..--  .+.+|=+|+.+.+..-.-.+++.-              ...-+|.++..-|.--   ..+.++
T Consensus         7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~--------------~~~~f~~s~~~L~~~E---~~~~Ls   69 (224)
T cd07623           7 MDETDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELAL--------------NTGSFAKSAAMLSNCE---EHTSLS   69 (224)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcc---cchhHH
Confidence            333566554443322  556666666666652222222221              2224677777777622   234699


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc--CCChHHHH-HHHHH---HHHHHHHHHHhhhhhccCCcccHH
Q 016699          109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL--GAPLDDAR-HLAQR---YDRMRQEAEAQLVISSSLKPSQAI  182 (384)
Q Consensus       109 ~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~--~~~lk~~~-~~~k~---y~~~r~ele~~~~~~~~l~~~rrl  182 (384)
                      ++|..+|++..+|......-...-...|.+||..|+-  + -+|++. .|.+-   |+.+...|..           +|.
T Consensus        70 ~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~-svk~~f~~R~~a~~~~q~a~~~l~k-----------kr~  137 (224)
T cd07623          70 RALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIG-AIKDVFHERVKVWQNWQNAQQTLTK-----------KRE  137 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence            9999999999999999999999999999999999876  3 255555 44433   3555555555           442


Q ss_pred             HHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          183 EVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL  262 (384)
Q Consensus       183 d~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL  262 (384)
                      -.-|.....+.+ ...+...+++.++.+.++.+..+..+..-....+...+..+..=.-..|..|++.+..|..++.+.+
T Consensus       138 ~~~Kl~~~~~~~-K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~W  216 (224)
T cd07623         138 AKAKLELSGRTD-KLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYW  216 (224)
T ss_pred             HHHHHHhcCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211111110000 1122344566666666666555555543333333333222222224478888999999999998887


Q ss_pred             HHHH
Q 016699          263 DQLE  266 (384)
Q Consensus       263 ~qL~  266 (384)
                      ..+.
T Consensus       217 e~~~  220 (224)
T cd07623         217 EAFL  220 (224)
T ss_pred             HHhc
Confidence            7653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh

>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length

Probab=97.84  E-value=0.0055  Score=57.46  Aligned_cols=163  Identities=18%  Similarity=0.288  Sum_probs=104.2

Q ss_pred             hhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHH
Q 016699           85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMR  163 (384)
Q Consensus        85 ~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r  163 (384)
                      ++.|+..+..|++.=.  +  ++-.+|-.|++....+++-++..+..+...++.||..|-..  .|.++ .+++ ..+.|
T Consensus        48 ~D~lak~l~~yA~~E~--~--~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~~--cK~~r~elK~-~~~ar  120 (219)
T PF06730_consen   48 GDELAKQLQDYANTEN--P--NLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYGTI--CKHARDELKK-FNKAR  120 (219)
T ss_pred             hHHHHHHHHHHHhcCC--c--cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHH-HHHHH
Confidence            4588999999988533  3  45669999999999999999999999999999999999875  88888 4544 22222


Q ss_pred             HHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016699          164 QEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR  243 (384)
Q Consensus       164 ~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~  243 (384)
                      ..--.           +.--+-    |.+.  ++|.+.+.+-.|+..+..+.-...--.+.....+-..|.|.-+=.=.-
T Consensus       121 ~kEik-----------q~~~Le----klr~--k~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i  183 (219)
T PF06730_consen  121 NKEIK-----------QLKQLE----KLRQ--KNPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEKQKLKDLKKI  183 (219)
T ss_pred             HHHHH-----------HHHHHH----HHHc--cCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21111           110111    2221  133333345556665555543322222233444444555422112235


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          244 LIAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       244 L~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      |..||..++-||..+.+++..-...+..
T Consensus       184 ~sdFv~iEM~fHaKALEv~T~a~q~i~~  211 (219)
T PF06730_consen  184 FSDFVTIEMVFHAKALEVYTAAYQDIQN  211 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6799999999999999999988887764

Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.

>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p

Probab=97.84  E-value=0.0081  Score=57.07  Aligned_cols=211  Identities=15%  Similarity=0.120  Sum_probs=119.8

Q ss_pred             HHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC
Q 016699           20 QAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN   99 (384)
Q Consensus        20 q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~   99 (384)
                      .+++|||+ --   -|+.-    |++...-+-+.+=.+      .+++...++.+.....--.....-||..+...|..-
T Consensus         4 rk~lkq~~-~p---~d~~~----el~~~rp~vk~~y~~------~~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E   69 (230)
T cd07625           4 RKTLKQFA-PP---YDEYT----ELAEFRPLVKSIYLT------AQDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEE   69 (230)
T ss_pred             HHhhhccC-cC---CCCCH----HHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            36899998 33   37655    888666666554222      235555555543221111112225788887777654


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCc
Q 016699          100 TCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKP  178 (384)
Q Consensus       100 ~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~  178 (384)
                      +   .+.+|+|+.++|++...++.....-...-...|-+||..++.  +.-.+. .+..|+.-+|.-...|-.+.+    
T Consensus        70 ~---~~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~--~~~~vKealtnR~~~~re~~qAq~~~~~----  140 (230)
T cd07625          70 T---HHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISR--DAYVVKEALTNRHLLMRELIQAQQNTKS----  140 (230)
T ss_pred             c---cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            3   346999999999999999999999999999999999999887  355555 444444444433333000000    


Q ss_pred             ccHHHHHHHhhhhccCCC-CCchHHhHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          179 SQAIEVSKRQAKVRETPG-NPDLALKLDAAEVKLHDLKSN-----------MAILGKEAAAAMAAVESQQQRLTLQRLIA  246 (384)
Q Consensus       179 ~rrld~kkr~~k~~e~~~-~~~~~~kl~~ae~k~~e~~~~-----------~~~L~~e~~~~~~~ve~qqq~~~l~~L~a  246 (384)
                       ++.-..    |.+-.+. .++   |+..|...+++....           +..|..|..+........    .-..+..
T Consensus       141 -K~~~~~----rlk~s~~i~~~---KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~d----l~~~l~e  208 (230)
T cd07625         141 -KQEAAR----RLKAKRDINPL---KVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEED----LQSAIRE  208 (230)
T ss_pred             -HHHHHH----HHhcCCCCChH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence             221111    1111111 121   444444444433222           223333444333222221    1337888


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 016699          247 MVEAERTYHQRVLQILDQL  265 (384)
Q Consensus       247 ~veAql~Yh~q~~~iL~qL  265 (384)
                      |+..+..|+++....|+.+
T Consensus       209 y~~~~ie~erk~l~~lE~~  227 (230)
T cd07625         209 YTLRKIEYERKKLSLLERI  227 (230)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999998877654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.76  E-value=2.4e-05  Score=82.42  Aligned_cols=56  Identities=27%  Similarity=0.505  Sum_probs=48.5

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCC-CeeEEEe-CCeeeEecCCCeeeccC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNN-GWAEGEC-KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~-gW~~G~~-~G~~G~fP~~YVe~l~~  374 (384)
                      -...|||||-+..+..|++.+||.+.|+..+.+ .|++.+. +|+ ||||+||+..+..
T Consensus        91 NLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNS  148 (1157)
T KOG4278|consen   91 NLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNS  148 (1157)
T ss_pred             ceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccc
Confidence            468999999999999999999999999998755 4888887 666 9999999987653

>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=1.1e-05  Score=81.34  Aligned_cols=60  Identities=28%  Similarity=0.544  Sum_probs=53.2

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEee-cCCCeeEEEe-CCeeeEecCCCeeeccCCCch
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGEC-KGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~-~d~gW~~G~~-~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      .+|++|||..++.+||++..||++.+... ..+|||+|.+ .|..|.||+.||+++....++
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a~~s   65 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLAVAS   65 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccccch
Confidence            58999999999999999999999998876 4779999998 999999999999998654333

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p

Probab=97.72  E-value=0.025  Score=53.09  Aligned_cols=160  Identities=10%  Similarity=0.136  Sum_probs=100.1

Q ss_pred             HHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH----HHHHH---H
Q 016699           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR----HLAQR---Y  159 (384)
Q Consensus        87 ~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~----~~~k~---y  159 (384)
                      -||.++..-|.--   .+..++.+|..+|++..++..........-...|.+||+.|+--  +--++    .|.+.   |
T Consensus        43 efa~~~~~L~~~E---~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~--~~Svk~~~~~R~~~~~~~  117 (216)
T cd07627          43 EFAETLEALSSLE---LSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIRS--IGSVRAAFAQRQKLWQYW  117 (216)
T ss_pred             HHHHHHHHHHHhh---cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            4677777776532   23579999999999999999999998888888888899998763  44444    22222   3


Q ss_pred             HHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCC-----CCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016699          160 DRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPG-----NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES  234 (384)
Q Consensus       160 ~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~-----~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~  234 (384)
                      +.+-..|..           .|...    .|.....+     ......+++.++.+.+.++..+..+.......+...+.
T Consensus       118 ~~~~~~L~k-----------~~~~~----~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~  182 (216)
T cd07627         118 QSAESELSK-----------KKAQL----EKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFER  182 (216)
T ss_pred             HHHHHHHHH-----------HHHHH----HHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444           33222    11111000     11233455556666666666655555545555544444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          235 QQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       235 qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      .+..-.-..|..|++++..+++.+.+.+..+.
T Consensus       183 ~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~  214 (216)
T cd07627         183 ERVEDFRNSVEIYLESAIESQKELIELWETFY  214 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333355888999999999999988887654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=97.68  E-value=4.3e-05  Score=79.47  Aligned_cols=101  Identities=13%  Similarity=0.232  Sum_probs=74.5

Q ss_pred             hhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCC---CCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016699           60 GKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC---TSG-NTLSKAALSYGRARAQMEKERGNLLKALGTQ  135 (384)
Q Consensus        60 ~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~---~~~-~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~  135 (384)
                      |-.|.+.|.+..-.+|.--..-.....++++.+..+--|.=.   +.| -..+.+|-.||....++++++..|+.++...
T Consensus        32 tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~ve~er~~~v~~Ase~  111 (812)
T KOG1451|consen   32 TNKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQVEDERMRMVGNASES  111 (812)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            345888888888777765444445556777777766444210   111 1278899999999999999999999999999


Q ss_pred             hchHHHHHhcCCChHHHHHHHHHHHH
Q 016699          136 VAEPLRAMVLGAPLDDARHLAQRYDR  161 (384)
Q Consensus       136 ~l~PL~~~~~~~~lk~~~~~~k~y~~  161 (384)
                      +|+||.+|-.- -+-.+.+++|+||+
T Consensus       112 li~PlekFRkE-qIG~~KE~KkKydK  136 (812)
T KOG1451|consen  112 LIEPLEKFRKE-QIGTLKEEKKKYDK  136 (812)
T ss_pred             HHhHHHHHHHH-HhhhhHHHHhhhhh
Confidence            99999998765 46666688888854

>KOG4773 consensus NADPH oxidase [Energy production and conversion]

Probab=97.68  E-value=5.9e-06  Score=81.09  Aligned_cols=62  Identities=21%  Similarity=0.419  Sum_probs=57.2

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCc
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ....+.+++||.+....||.|.+||++.+....+.+||.|...|.+||||.+|+..++..|.
T Consensus       174 ~~q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpe  235 (386)
T KOG4773|consen  174 AAQRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPE  235 (386)
T ss_pred             hhHHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCcc
Confidence            34568899999999999999999999999999999999999999999999999999876665

>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p

Probab=97.60  E-value=0.017  Score=52.95  Aligned_cols=125  Identities=10%  Similarity=0.118  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHH
Q 016699          106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVS  185 (384)
Q Consensus       106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~k  185 (384)
                      ++|.+|-.+|.+...++....++...+..+|++||+.++.=  ...++...+.-+..+-.++.           - .|+.
T Consensus        58 ~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~~~y--~~s~k~~lk~R~~kq~d~e~-----------l-~e~l  123 (185)
T cd07628          58 EITEPFKIFSESLSQFSTSLRVLNKYTDENYLTSLKDLLHY--ILSLKNLIKLRDQKQLDYEE-----------L-SDYL  123 (185)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHH-----------H-HHHH
Confidence            49999999999999999999999999999999999998763  33344333322222222222           0 0111


Q ss_pred             HHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          186 KRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL  265 (384)
Q Consensus       186 kr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL  265 (384)
                                    ...+...|+..++.....       ....+...+....+=.-..|.+|++.+..|++.+...+..+
T Consensus       124 --------------l~~~ve~a~~~~e~f~~~-------~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~  182 (185)
T cd07628         124 --------------LTDEVENAKETSDAFNKE-------VLKEYPNFERIKKQEIKDSLGALADGHIDFYQGLVEDWEKV  182 (185)
T ss_pred             --------------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                          111445555555554433       33333333333222234589999999999999998887665

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]

Probab=97.56  E-value=0.011  Score=56.58  Aligned_cols=218  Identities=17%  Similarity=0.199  Sum_probs=139.0

Q ss_pred             HHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhc
Q 016699           18 QQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS   97 (384)
Q Consensus        18 ~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~   97 (384)
                      ++|-++.++|     -++-++-.|-|.|+    |-|    +-+|+=.+.|++..-.|-..=+-.++.-..||+.+.....
T Consensus       108 tkQillEklG-----k~~rTVD~ElEaQi----e~L----rd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadLs~  174 (341)
T KOG3876|consen  108 TKQILLEKLG-----KGSRTVDLELEAQI----EVL----RDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADLSQ  174 (341)
T ss_pred             HHHHHHHHhc-----CCccccCHHHHHHH----HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566666666     24567766666553    222    2222222333333333211112223333467777766554


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 016699           98 DNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLK  177 (384)
Q Consensus        98 e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~  177 (384)
                      ..+     .+-.-.-.-.++++-+++.-+.++..+ .-||.....++.+ -++|..+..+.|++.|-|.+.         
T Consensus       175 K~~-----elq~eft~nseTqr~l~kngetLl~al-nfFIsSvnTl~nk-Ti~DTL~Ti~qyEsARiEyDa---------  238 (341)
T KOG3876|consen  175 KSP-----ELQEEFTYNSETQRLLGKNGETLLGAL-NFFISSVNTLVNK-TIEDTLMTIKQYESARIEYDA---------  238 (341)
T ss_pred             cCH-----HHHHHhCcCHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHhh-hhHHHHHHHHHhhhhhhhhhh---------
Confidence            333     122222223567777877777776655 5789999999998 799999889999999999999         


Q ss_pred             cccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          178 PSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  257 (384)
Q Consensus       178 ~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q  257 (384)
                        -|-|+...--+-++..    ....+..|+.+|++-++.++.|-.++.--|.-+|..+..+.-.||.-|-.|-..|+.-
T Consensus       239 --yR~Dle~~~l~P~~~~----t~~~le~aq~~~q~hkekYeKlrnDvaiKmkfLeENrIkVmh~QL~llhnAiaAYfsG  312 (341)
T KOG3876|consen  239 --YRTDLEELTLGPRDAL----TKNLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLEENRIKVMHKQLELLHNAIAAYFSG  312 (341)
T ss_pred             --hhhhHHHhcCCccccc----cccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Confidence              8888854333322221    2236888999999999999999888888887776655555566888888888888887


Q ss_pred             HHHHHHHHHHHHH
Q 016699          258 VLQILDQLEGEML  270 (384)
Q Consensus       258 ~~~iL~qL~~eL~  270 (384)
                      ....|++--.++.
T Consensus       313 Nak~LE~tlkqf~  325 (341)
T KOG3876|consen  313 NAKQLEQTLKQFN  325 (341)
T ss_pred             cHHHHHHHHHHhc
Confidence            7777666555443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.50  E-value=0.0027  Score=70.01  Aligned_cols=164  Identities=16%  Similarity=0.262  Sum_probs=107.4

Q ss_pred             CCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHH
Q 016699           77 TGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLA  156 (384)
Q Consensus        77 ~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~  156 (384)
                      .+.--+.+.+.++.-...+....+  .+...|.+|.+|..+...+......+...+...+..||.+|+++ ||+++...+
T Consensus        50 ~~~~~~~~~~~f~~~~~d~~~~~~--~~~~~~~~l~~fs~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~-dl~~v~~~k  126 (785)
T KOG0521|consen   50 AGKEFVQATEQFGKGLKDLFSLGQ--DEEVISETLQKFSKVLRELGTYHTELRSQLAHTLSLPLSQFVKG-DLHEVKELK  126 (785)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcc--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhhhh
Confidence            343334444456666666644433  55568999999999999999999999999999999999999999 999999889


Q ss_pred             HHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016699          157 QRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQ  236 (384)
Q Consensus       157 k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qq  236 (384)
                      +.++++.++.+.           -+.-+.+..++.+ .....+.+.++..+..+|+-+.-.+.       .+...++...
T Consensus       127 k~f~ka~~~~d~-----------a~~k~~~l~k~~~-~~~~~e~~~~l~~~r~~f~~~~~~y~-------~~ln~~q~kk  187 (785)
T KOG0521|consen  127 KLFEKASEEYDL-----------ALVKYSRLPKKRR-SKVKTEVEEELAAARRKFQLTALDYV-------LALNVLQAKK  187 (785)
T ss_pred             HHHHHHHhhHHH-----------HHHHhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHHH-------Hhhhhhhccc
Confidence            999999999999           4432211111111 22233344477777777777765521       1111111112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          237 QRLTLQRLIAMVEAERTYHQRVLQIL  262 (384)
Q Consensus       237 q~~~l~~L~a~veAql~Yh~q~~~iL  262 (384)
                      +-..++-+..|+.|+..|+.+....+
T Consensus       188 ~~~~le~~l~~~~aq~~fF~~g~~l~  213 (785)
T KOG0521|consen  188 QFEILETLLGFMHAQINFFKQGEDLL  213 (785)
T ss_pred             chHHHHHHHHHHHhccchhcccHhHH
Confidence            22225566666666666666655433

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=97.49  E-value=0.056  Score=51.80  Aligned_cols=151  Identities=17%  Similarity=0.189  Sum_probs=93.2

Q ss_pred             HHHHHHhhccCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 016699           89 SEDSRKYGSDNTC--TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (384)
Q Consensus        89 ~~~m~~~g~e~~~--~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~el  166 (384)
                      .+....||.=+..  .....+|.+|-.+|.+..++.....+....+..+|++||+.|+-=  ...++...++-+.+..++
T Consensus        88 ~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y--~~slK~vlk~R~~~Q~~l  165 (243)
T cd07666          88 FEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLY--SETLMGVIKRRDQIQAEL  165 (243)
T ss_pred             HHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            4444555543321  224459999999999999999999999999999999999998874  344443333224444455


Q ss_pred             HHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          167 EAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIA  246 (384)
Q Consensus       167 e~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a  246 (384)
                      +.           .+ |+..+.   +.+ + .....+++..+.+.++....   +..|..    ..+.+.++=.-.-+..
T Consensus       166 e~-----------k~-e~l~k~---~~d-r-~~~~~ev~~~e~kve~a~~~---~k~e~~----Rf~~~k~~D~k~~~~~  221 (243)
T cd07666         166 DS-----------KV-EALANK---KAD-R-DLLKEEIEKLEDKVECANNA---LKADWE----RWKQNMQTDLRSAFTD  221 (243)
T ss_pred             HH-----------HH-HHHHhh---hhh-H-HHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHH
Confidence            55           33 221111   111 0 13445677777777776333   222222    2223322223447889


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 016699          247 MVEAERTYHQRVLQILDQL  265 (384)
Q Consensus       247 ~veAql~Yh~q~~~iL~qL  265 (384)
                      |++.+..|+++|...++.+
T Consensus       222 yae~~i~~~~~~~~~We~f  240 (243)
T cd07666         222 MAENNISYYEECLATWESF  240 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1

Probab=97.44  E-value=0.034  Score=52.96  Aligned_cols=162  Identities=9%  Similarity=0.101  Sum_probs=94.0

Q ss_pred             HHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcC-CChHHHH-HHHHHH---HHH
Q 016699           88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG-APLDDAR-HLAQRY---DRM  162 (384)
Q Consensus        88 l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~-~~lk~~~-~~~k~y---~~~  162 (384)
                      +|.+|..-|.--   .++.++++|..+|+++.+|....+.-...-.-.|-+||..|+-- ..+|.+- .|.+.|   +.+
T Consensus        62 Fa~s~~~L~~~E---~~~~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~  138 (234)
T cd07665          62 FAKSLAMLGSSE---DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDA  138 (234)
T ss_pred             HHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445444444321   34579999999999999999999999999999999999998753 0255555 555554   555


Q ss_pred             HHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016699          163 RQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQ  242 (384)
Q Consensus       163 r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~  242 (384)
                      -.+|..           +|.-..|.....+.+ +...+..+++.++.+.++.+..+..++.-....+...+.....= +.
T Consensus       139 ~~~l~k-----------Kr~~~~Kl~~~~~~d-K~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~D-fk  205 (234)
T cd07665         139 QAMLQK-----------KREAEARLLWANKPD-KLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKD-FK  205 (234)
T ss_pred             HHHHHH-----------HHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            555655           554332222111111 12223445555555555555444433332222222222211111 33


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHH
Q 016699          243 -RLIAMVEAERTYHQRVLQILDQL  265 (384)
Q Consensus       243 -~L~a~veAql~Yh~q~~~iL~qL  265 (384)
                       .+..|++++.....++...+..+
T Consensus       206 ~~v~~fles~ie~qke~ie~We~f  229 (234)
T cd07665         206 NHIIKYLETLLHSQQQLVKYWEAF  229 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence             47777888888888777766554

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4

Probab=97.39  E-value=0.017  Score=53.74  Aligned_cols=151  Identities=13%  Similarity=0.158  Sum_probs=93.4

Q ss_pred             HHHHHHHhhccCC--CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 016699           88 LSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (384)
Q Consensus        88 l~~~m~~~g~e~~--~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~e  165 (384)
                      |+.++..||.-|.  +..+..+|.+|-.+|.+...+...-++.... ..+|++||+.|+.=  ...++...|+.+-.+.+
T Consensus        47 l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~~~~-~~~f~e~LkEy~~y--a~slk~vlk~r~~~q~~  123 (201)
T cd07622          47 VYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNGLED-EELIADQLKEYLFF--ADSLRAVCKKHELLQYD  123 (201)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            5667777776554  2345689999999999999988888887766 48899999998874  44455444433444444


Q ss_pred             HHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          166 AEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLI  245 (384)
Q Consensus       166 le~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~  245 (384)
                      ++.           -- |...++..  +      ...+++.|...+++..       .++.+.+...+.+...=.-..|.
T Consensus       124 ~e~-----------~~-~~L~~k~~--~------l~~~ve~a~~~~e~f~-------~~~~~E~~rF~~~K~~dlk~~l~  176 (201)
T cd07622         124 LEK-----------AE-DALANKKQ--Q------GEEAVKEAKDELNEFV-------KKALEDVERFKKQKVRDLKEILI  176 (201)
T ss_pred             HHH-----------HH-HHHHHHHH--H------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            444           11 33111111  0      2224444444444333       32333333333332222345899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 016699          246 AMVEAERTYHQRVLQILDQLEGE  268 (384)
Q Consensus       246 a~veAql~Yh~q~~~iL~qL~~e  268 (384)
                      +|+..+..|++.+..++..+..-
T Consensus       177 ~~A~~qi~~~~~~~~~W~~~~~~  199 (201)
T cd07622         177 SYAKLQIKLAKKGLQTWTNIKEC  199 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999887653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and

>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p

Probab=97.26  E-value=0.071  Score=49.04  Aligned_cols=144  Identities=17%  Similarity=0.117  Sum_probs=87.6

Q ss_pred             HHHHHHHhhccCCC----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHH
Q 016699           88 LSEDSRKYGSDNTC----TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR  163 (384)
Q Consensus        88 l~~~m~~~g~e~~~----~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r  163 (384)
                      |+.++.++|.-|..    .++..++.+|-++|.+.-.....-+++...+..+|.+||+.++.=  ...++...+.++..+
T Consensus        38 l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~y--~~s~k~vlk~R~~K~  115 (187)
T cd07629          38 LAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQF--AGVVRELLKYRKLKH  115 (187)
T ss_pred             HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            45555555554331    122369999999999999999999999999999999999999884  556665444222222


Q ss_pred             HHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-
Q 016699          164 QEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQ-  242 (384)
Q Consensus       164 ~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~-  242 (384)
                      ...+.                  ...-.         ..++..+..++.+..+.  .+..|..+.-..-..     -+. 
T Consensus       116 ~Q~e~------------------l~~~L---------~e~~~~~~~~~~~~~~~--~~~~el~rF~~ek~~-----dl~~  161 (187)
T cd07629         116 VQYEM------------------TKDSL---------LESALVAASDDLVISST--IKQKDLPRFQREREA-----DLRE  161 (187)
T ss_pred             HHHHH------------------HHHHH---------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHH-----HHHH
Confidence            22222                  00011         11233444455555322  122222222211111     133 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          243 RLIAMVEAERTYHQRVLQILDQLEG  267 (384)
Q Consensus       243 ~L~a~veAql~Yh~q~~~iL~qL~~  267 (384)
                      -|..|+..+..|..+|..++.+++.
T Consensus       162 ~l~~~a~~~~~~a~~~~~~W~~~~~  186 (187)
T cd07629         162 ILKNYSKYHKDWAKQNLEAWKEAKA  186 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6889999999999999999987754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

Probab=97.24  E-value=0.093  Score=50.15  Aligned_cols=151  Identities=13%  Similarity=0.201  Sum_probs=98.2

Q ss_pred             HHHHHHhhccCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 016699           89 SEDSRKYGSDNTC--TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (384)
Q Consensus        89 ~~~m~~~g~e~~~--~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~el  166 (384)
                      ..+...||.-|..  .-...+|..|-.|+.+..+....-+++.......|+.+|+.|+.=  ....+...|+-|-..-++
T Consensus        85 ~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y--~~slk~vlK~RdqkQ~d~  162 (240)
T cd07667          85 LVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILY--SESMKNVLKKRDQVQAEY  162 (240)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            4444555555442  344569999999999999999999999999999999999998873  333335555444444445


Q ss_pred             HHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          167 EAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIA  246 (384)
Q Consensus       167 e~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a  246 (384)
                      |.            .+|+...++.            +++.-+.+.+++...++..+.+..+.+...+...+.=.-..|..
T Consensus       163 E~------------l~E~l~~rre------------~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~  218 (240)
T cd07667         163 EA------------KLEAVALRKE------------ERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMG  218 (240)
T ss_pred             HH------------HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44            1122111111            34444555666655555555555555544444333223558999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 016699          247 MVEAERTYHQRVLQILDQL  265 (384)
Q Consensus       247 ~veAql~Yh~q~~~iL~qL  265 (384)
                      |.+.+..||+.|..+++.+
T Consensus       219 ~Ad~~i~fy~~~~~~We~~  237 (240)
T cd07667         219 MADKNIQYYEKCLTAWESI  237 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG4575 consensus TGc (transglutaminase/protease-like) domain-containing protein involved in cytokinesis [Cell cycle control, cell division, chromosome partitioning]

Probab=97.20  E-value=0.00036  Score=73.23  Aligned_cols=57  Identities=18%  Similarity=0.353  Sum_probs=48.7

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeecc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRD  373 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~  373 (384)
                      +..++|+|.|-++.+++|.|.+||+|.++...+.-||-+.+  ....|+||+|||-.++
T Consensus         8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd   66 (874)
T KOG4575|consen    8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLD   66 (874)
T ss_pred             CceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeecc
Confidence            45789999999999999999999999999987777777766  4567999999996553

>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]

Probab=97.17  E-value=0.0002  Score=75.42  Aligned_cols=58  Identities=21%  Similarity=0.290  Sum_probs=50.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~~  375 (384)
                      ...+.++|||.+.+..||++.+||++.|+.. .-+||.++. .|+.|+||+|-+..+.+.
T Consensus       500 ~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~  558 (721)
T KOG3557|consen  500 KKWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPE  558 (721)
T ss_pred             ceeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCc
Confidence            3478999999999999999999999998876 457999988 899999999988776543

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=97.15  E-value=0.023  Score=59.85  Aligned_cols=54  Identities=26%  Similarity=0.481  Sum_probs=44.9

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEE-EEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVV-VRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~-V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      .+..+|...+....+|+|..|.++. |.+...+||+.|..+|+.|++|+|||+.+
T Consensus       758 k~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l  812 (812)
T KOG1451|consen  758 RVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL  812 (812)
T ss_pred             cccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence            4677888888888889999998887 66677888999999999999999998764

>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]

Probab=97.15  E-value=0.00032  Score=76.66  Aligned_cols=55  Identities=20%  Similarity=0.363  Sum_probs=47.4

Q ss_pred             ceeEeeccCCCC--------CCCCcccCCCCEEEEEee-cCCCeeEEEeCCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAE--------SDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~--------~~~ELsf~~GdiI~V~~~-~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ....|+|||++-        .+.||+|++|+||.|+.. +.+|++.|+++|+.|++|+|+|..+
T Consensus      1139 rifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~ 1202 (1335)
T KOG3632|consen 1139 RIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQ 1202 (1335)
T ss_pred             eeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccc
Confidence            456899999874        456899999999999876 4678999999999999999999765

>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]

Probab=97.01  E-value=0.00043  Score=74.45  Aligned_cols=60  Identities=17%  Similarity=0.478  Sum_probs=52.8

Q ss_pred             CCCcceeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEE--eCCeeeEecCCCeeecc
Q 016699          314 AMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGE--CKGKAGWFPFGYIERRD  373 (384)
Q Consensus       314 ~~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~--~~G~~G~fP~~YVe~l~  373 (384)
                      .+..+.|.++|.|.+.+++++++.+|+++.|++.+ .+||-+++  ++|..|+||.+||+...
T Consensus       575 ~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~  637 (640)
T KOG3565|consen  575 SPPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE  637 (640)
T ss_pred             CCCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence            33456799999999999999999999999998875 77999999  69999999999998754

>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins

Probab=96.99  E-value=0.3  Score=45.39  Aligned_cols=183  Identities=11%  Similarity=0.107  Sum_probs=103.4

Q ss_pred             CcccccchHHHh--hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhc-cCCCCCCChhHHH
Q 016699           34 SDNVVTDEAELH--QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS-DNTCTSGNTLSKA  110 (384)
Q Consensus        34 ~~~~~~~e~e~~--~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~-e~~~~~~~~~g~a  110 (384)
                      +|++..++-...  .|.+|-+++..+...-.-.+++.-..              ..+|.++..-|. |.+  +...++++
T Consensus         2 ~D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~--------------~~fs~al~~L~~~E~~--~~~~l~~~   65 (198)
T cd07630           2 VDEFFQKERDMNTKLSANMKEAAEKFLKIVNTEQRLANAL--------------GHLSSSLQLCVGLDEA--SVVALNRL   65 (198)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhccccc--chHhHHHH
Confidence            355555555443  67777777777765333333222221              235555544444 322  32379999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc--CCChHHHH-HHHHH---HHHHHHHHHHhhhhhccCCcccHHHH
Q 016699          111 ALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL--GAPLDDAR-HLAQR---YDRMRQEAEAQLVISSSLKPSQAIEV  184 (384)
Q Consensus       111 l~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~--~~~lk~~~-~~~k~---y~~~r~ele~~~~~~~~l~~~rrld~  184 (384)
                      |.+++++...|....+....+-...|.+||+.|+-  + -.|++. .|.+.   |++.-+.++.           .    
T Consensus        66 l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~-a~K~~l~~R~~~~~~~~~a~k~l~K-----------a----  129 (198)
T cd07630          66 CTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSE-SEKDMLFRRTCKLIEFENASKALEK-----------A----  129 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----------h----
Confidence            99999999999999999999999999999999765  2 245555 33332   3443333333           1    


Q ss_pred             HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          185 SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD  263 (384)
Q Consensus       185 kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~  263 (384)
                        |..| ++     .++.....|+.+|++..+.       +...+...+..+..-.=.-|..|++.+...-..+..++.
T Consensus       130 --r~~k-~~-----~ae~~~~~a~~~fe~iS~~-------~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~  193 (198)
T cd07630         130 --KPQK-KE-----QAEEAKKKAETEFEEISSL-------AKKELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLT  193 (198)
T ss_pred             --HHhh-HH-----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1111 11     1445666677777776655       222222222211111122566677777666666655543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6

Probab=96.78  E-value=0.48  Score=44.77  Aligned_cols=55  Identities=16%  Similarity=0.220  Sum_probs=44.0

Q ss_pred             HHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc
Q 016699           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (384)
Q Consensus        87 ~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~  145 (384)
                      .+|.++...|+-    .++.++++|.++|++..+|.+........---.|-++|+.|+-
T Consensus        63 ~fs~al~~L~~~----E~t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r  117 (219)
T cd07621          63 KISAALTQLATS----EPTPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMR  117 (219)
T ss_pred             HHHHHHHHhhcc----ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence            455555555542    4468999999999999999999988888888889999999876

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain

>KOG3775 consensus Mitogen-activated protein kinase scaffold protein JIP [Signal transduction mechanisms]

Probab=96.62  E-value=0.001  Score=66.18  Aligned_cols=56  Identities=30%  Similarity=0.445  Sum_probs=51.2

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeecc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRD  373 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~  373 (384)
                      ..=|+++.|-+..++||-|..||.|.|-...++-|++|.+  +|++|+||+.|+-.+.
T Consensus       263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd  320 (482)
T KOG3775|consen  263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVD  320 (482)
T ss_pred             hhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecC
Confidence            4468999999999999999999999999988999999987  9999999999997764

>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa

Probab=96.61  E-value=0.32  Score=45.05  Aligned_cols=182  Identities=13%  Similarity=0.123  Sum_probs=116.2

Q ss_pred             HHHHhhhhcccccC--CCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 016699           64 QRDIVRGVEGYIVT--GSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLR  141 (384)
Q Consensus        64 ~~~i~r~~e~~~~~--~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~  141 (384)
                      -..+.|.+|-|-..  --.|.|+  -||+.+...|....  +-.  |+-....|.+...-++.+..... =-.-|...+.
T Consensus        18 ~~~Llk~i~~yq~~l~~lsq~e~--~LG~fl~e~~~~d~--t~a--g~~m~~t~KaL~~sg~qrl~~r~-pl~~f~~~v~   90 (204)
T cd07661          18 CLELLKIIDNYQERLCILSQEEN--VLGKFLKEQGKIDK--TTA--GKMMAATGKALSFSSQQRLALRV-PLLRLYQEVE   90 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccCh--hhh--ccHHHHHHHHHHHhHHHHHHHHh-hHHHHHHHHH
Confidence            34555555554322  1234555  78999998888765  211  34444444444444444333311 1234555677


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhh-hccCCCCCchHHhHHHHHHHHHHHHHHHHH
Q 016699          142 AMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAK-VRETPGNPDLALKLDAAEVKLHDLKSNMAI  220 (384)
Q Consensus       142 ~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k-~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~  220 (384)
                      .|... -+.|..+..++|+..|-|..+           -|+|++.-... -++...   ...+++.++..+...++.++.
T Consensus        91 Tf~~r-ai~Dtl~Ti~~~E~aR~EY~a-----------~~~~mk~~s~eldP~~~~---~l~kfr~aQ~qvr~~K~kfdk  155 (204)
T cd07661          91 TFRER-AIADTLQTIQRMEKCRTEYRA-----------ALLWMKSVSQELDPDTYK---QLEKFRKAQAQVRSAKERFDK  155 (204)
T ss_pred             HHHHH-HHHHHHHHHHHHHHhhcccHH-----------HHHHHHHHhhhcCCccch---hHHHHHHHHHHHHHHHHHHHH
Confidence            77777 488888888899999999999           88877543321 122222   334788888888888887777


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          221 LGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG  267 (384)
Q Consensus       221 L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~  267 (384)
                      |-.++..-.--++..+-++.-.+|..+-.+.+.|+......|..+..
T Consensus       156 Lk~Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~~~i~~  202 (204)
T cd07661         156 LKMDVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTMATIHE  202 (204)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            75555544444455566666779999999999999999998887764

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=96.55  E-value=0.00086  Score=69.63  Aligned_cols=54  Identities=19%  Similarity=0.355  Sum_probs=45.7

Q ss_pred             ceeEeeccCCCCCCC-------CcccCCCCEEEEEeecCCCeeEEEeC-----CeeeEecCCCeee
Q 016699          318 FLGEVVHPYQAESDV-------ELTLSVGDYVVVRKVTNNGWAEGECK-----GKAGWFPFGYIER  371 (384)
Q Consensus       318 ~~a~alydy~a~~~~-------ELsf~~GdiI~V~~~~d~gW~~G~~~-----G~~G~fP~~YVe~  371 (384)
                      ..++|+|||++..+.       .|+|..|||+.|++..|.+||.+.+.     +..|.+|+...+.
T Consensus       215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe  280 (542)
T KOG0609|consen  215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE  280 (542)
T ss_pred             eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence            568999999988765       58999999999999999999999873     5679999976543

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=96.53  E-value=0.0012  Score=68.34  Aligned_cols=56  Identities=21%  Similarity=0.486  Sum_probs=49.7

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCE-EEEEeecCCCeeEEEe--CCeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDY-VVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~Gdi-I~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l  372 (384)
                      ...+.++|||.+..+.+|+|..||. ..+++..+..||..+.  .|..|++|.|||...
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence            3468999999999999999999999 6677778889999876  789999999999865

>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]

Probab=96.51  E-value=0.0057  Score=67.35  Aligned_cols=58  Identities=24%  Similarity=0.413  Sum_probs=48.6

Q ss_pred             cceeEeeccCCC------CCCCCcccCCCCEEEEEeec-CCCeeEEEe-CCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQA------ESDVELTLSVGDYVVVRKVT-NNGWAEGEC-KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a------~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~-~G~~G~fP~~YVe~l~~  374 (384)
                      ...+.+.|+|++      ..+.||.+.+|++|+|...+ .+|+++|+. .|+.|.+|+|||+.+.+
T Consensus       447 ~q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~d  512 (1335)
T KOG3632|consen  447 AQPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVTD  512 (1335)
T ss_pred             cceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEecc
Confidence            345788888877      34568999999999999876 558999998 99999999999998753

>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN)

Probab=96.36  E-value=0.54  Score=44.84  Aligned_cols=94  Identities=21%  Similarity=0.186  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHhhhhcc--cccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016699           47 HQRLERLYISTRAGKHFQRDIVRGVEG--YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE  124 (384)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~--~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~  124 (384)
                      +-+++.|+..++.+..+.++|+.-..-  -|...|..  ...+|+.-..+.+   +..+ ++|..++..|......++..
T Consensus         4 ~~g~~~l~~~~~~G~~~ckel~~f~kERa~IE~~YAK--~L~kLa~k~~k~~---~~~~-Gtl~~aw~~~~~e~e~~a~~   77 (239)
T cd07658           4 QKGFEELRRYVKQGGDFCKELATVLQERAELELNYAK--GLSKLSGKLSKAS---KSVS-GTLSSAWTCVAEEMESEADI   77 (239)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhh---ccCC-CcHHHHHHHHHHHHHHHHHH
Confidence            457788999999998888888765531  01111211  1113443333233   2224 57999999999999999999


Q ss_pred             HHHHHHHHhhhhchHHHHHhcC
Q 016699          125 RGNLLKALGTQVAEPLRAMVLG  146 (384)
Q Consensus       125 ~~~~~~~~~~~~l~PL~~~~~~  146 (384)
                      +..+...+...+..||+.|+..
T Consensus        78 H~~la~~L~~ev~~~l~~~~~~   99 (239)
T cd07658          78 HRNLGSALTEEAIKPLRQVLDE   99 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999875

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo

>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5

Probab=96.31  E-value=1  Score=42.58  Aligned_cols=97  Identities=12%  Similarity=0.136  Sum_probs=64.5

Q ss_pred             CCCCcccccchHHHh--hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhH
Q 016699           31 YGGSDNVVTDEAELH--QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLS  108 (384)
Q Consensus        31 ~~~~~~~~~~e~e~~--~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g  108 (384)
                      +--+|++.-+|-.-.  .|.+|=+++...+..-.--+.+.-            .-+  .++..|..-+.|    .++.++
T Consensus        18 ~ke~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~------------~~~--~~s~al~~l~~e----e~t~L~   79 (218)
T cd07663          18 VKEVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVAD------------DYI--HISAALNSVAAE----EPTVIK   79 (218)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH--HHHHHHHhhccc----ccchHH
Confidence            334677775554322  777777777766653333332221            111  344444433322    445799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc
Q 016699          109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (384)
Q Consensus       109 ~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~  145 (384)
                      ++|.++|++..+|...+.....+---.|.++|+.|+-
T Consensus        80 kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r  116 (218)
T cd07663          80 KYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYML  116 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence            9999999999999999999988888899999999875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It

>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=96.13  E-value=0.00088  Score=62.06  Aligned_cols=52  Identities=21%  Similarity=0.364  Sum_probs=46.6

Q ss_pred             eEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEeCCeeeEecCCCeee
Q 016699          320 GEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIER  371 (384)
Q Consensus       320 a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~~G~~G~fP~~YVe~  371 (384)
                      +.++|+|.+...+||+|.+||.+.++... +-+|...+..|..|++|.||.+.
T Consensus         3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~   55 (222)
T KOG3601|consen    3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM   55 (222)
T ss_pred             hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence            56789999999999999999999988874 55899999999999999999854

>smart00721 BAR BAR domain

Probab=96.00  E-value=0.43  Score=44.46  Aligned_cols=151  Identities=10%  Similarity=0.144  Sum_probs=90.3

Q ss_pred             CcccccchHHHh-hhHHHHHHHHHhhhhhhhH------HHHhhhhc----c---cccC--CCcccchhhHHHHHHHHhhc
Q 016699           34 SDNVVTDEAELH-QHQRLERLYISTRAGKHFQ------RDIVRGVE----G---YIVT--GSKQVEIGTKLSEDSRKYGS   97 (384)
Q Consensus        34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~------~~i~r~~e----~---~~~~--~~~~~e~~~~l~~~m~~~g~   97 (384)
                      .++|...|..+. .+..+++|+..+..   |.      +.......    .   +..+  .....+....+|.+|.    
T Consensus        26 D~~f~~le~~~~~~~~~~~kl~k~~~~---y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~----   98 (239)
T smart00721       26 DEDFEELERRFDTTEAEIEKLQKDTKL---YLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALD----   98 (239)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHH----
Confidence            456666777777 88888888876665   44      22222111    1   1111  0111111112333333    


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 016699           98 DNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLK  177 (384)
Q Consensus        98 e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~  177 (384)
                              .+|.++..+++++..+.....+++..+..-+..-+.....-  .+.-.++...||+.|.++++         
T Consensus        99 --------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~kk~~~~~lDyD~~~~kl~~---------  159 (239)
T smart00721       99 --------KLGEALKKLLQVEESLSQVKRTFILPLLNFLLGEFKEIKKA--RKKLERKLLDYDSARHKLKK---------  159 (239)
T ss_pred             --------HHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHhHHHHHH--HHHHHhHHHHHHHHHHHHHH---------
Confidence                    36677788888888887778888887777666655555543  33333777889999999998         


Q ss_pred             cccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHH
Q 016699          178 PSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN  217 (384)
Q Consensus       178 ~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~  217 (384)
                            +++...+..+. ...+.+.+++.|+.+|+++...
T Consensus       160 ------~~~~~~~~~~~-kl~~~e~el~~ak~~fe~~~~~  192 (239)
T smart00721      160 ------AKKSKEKKKDE-KLAKAEEELRKAKQEFEESNAQ  192 (239)
T ss_pred             ------HHHhccCChhh-hhhhHHHHHHHHHHHHHHHHHH
Confidence                  22222121111 3455677999999999997654

>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

Probab=95.94  E-value=1.6  Score=41.73  Aligned_cols=193  Identities=16%  Similarity=0.166  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC--------CCCCChhHHHHHHHHHHH
Q 016699           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT--------CTSGNTLSKAALSYGRAR  118 (384)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~--------~~~~~~~g~al~~~g~a~  118 (384)
                      ...+-+|+.+......-.+.++++.++.-   .-.    ..+|..+...|...+        +..-..+..+|..+|.-.
T Consensus        28 r~~I~~l~~~~~~l~~l~er~~kR~~~~A---~d~----~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~s~~~  100 (246)
T cd07597          28 RERIRRLLESWTKLRVLAERYEKRSQQQA---ADR----AEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSLSKHF  100 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555421   111    134555555555432        111156788999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH---HHHHH-----HHHHHHHHHHhhhhhccCCcccHHHHHHHhhh
Q 016699          119 AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR---HLAQR-----YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAK  190 (384)
Q Consensus       119 ~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~---~~~k~-----y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k  190 (384)
                      ..+...-.+-.....+.|++||+.|++-  +--.+   .|.++     |+++.+..+.           .    +++..+
T Consensus       101 ~~~s~~~~~~a~~~~~~vlE~Lk~~~d~--l~S~r~lf~R~~k~~~~~i~~l~~ri~~-----------~----~~kl~~  163 (246)
T cd07597         101 QLLSDLSEDEARAEEDGVLEKLKLQLDL--LVSLRDLFERHEKLSLNNIQRLLKRIEL-----------N----KKKLES  163 (246)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHH--HHHHHHHHHHHHhcccccHHHHHHHHHH-----------H----HHHHHH
Confidence            9999999999999999999999998874  54444   44442     3445444444           1    122222


Q ss_pred             hccCC-CCCchHHhHHHHHHHHHHHHHHHHHh-H-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          191 VRETP-GNPDLALKLDAAEVKLHDLKSNMAIL-G-----KEAAAAMA-AVESQQQRLTLQRLIAMVEAERTYHQRVLQIL  262 (384)
Q Consensus       191 ~~e~~-~~~~~~~kl~~ae~k~~e~~~~~~~L-~-----~e~~~~~~-~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL  262 (384)
                      .+..+ ..+.   ++..-++.....++....+ +     ++....-. -+.+.++ +....|..|+..+..||.....++
T Consensus       164 l~~~~~~~~~---e~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~~~l~~~W  239 (246)
T cd07597         164 LRAKPDVKGA---EVDKLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYHSELANVW  239 (246)
T ss_pred             hhcCCCCchh---HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111 1111   3333333333333222211 1     11111111 1122222 667799999999999999999888


Q ss_pred             HHHHH
Q 016699          263 DQLEG  267 (384)
Q Consensus       263 ~qL~~  267 (384)
                      ..|..
T Consensus       240 ~~L~~  244 (246)
T cd07597         240 ERLVP  244 (246)
T ss_pred             HHhcc
Confidence            77754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=95.58  E-value=2.2  Score=40.41  Aligned_cols=94  Identities=14%  Similarity=0.107  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 016699           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERG  126 (384)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~  126 (384)
                      +.+++-|+.++..+..|.++|..-.--   ....--+-+..|..-..+|....   ..+.|..++..+-.....|+..+.
T Consensus         4 d~G~~~l~~r~~~g~~~~~el~~f~ke---Ra~iE~eYak~L~kLakk~~~~~---~~gsl~~a~~~i~~e~e~~a~~H~   77 (236)
T cd07651           4 DAGFDVIQTRIKDSLRTLEELRSFYKE---RASIEEEYAKRLEKLSRKSLGGS---EEGGLKNSLDTLRLETESMAKSHL   77 (236)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccccCCC---CcchHHHHHHHHHHHHHHHHHHHH
Confidence            567888888888888887777653310   00000112223444444444211   224589999999999999999999


Q ss_pred             HHHHHHhhhhchHHHHHhcC
Q 016699          127 NLLKALGTQVAEPLRAMVLG  146 (384)
Q Consensus       127 ~~~~~~~~~~l~PL~~~~~~  146 (384)
                      .|...+...+.+||..|...
T Consensus        78 ~~a~~L~~~v~~~l~~~~~~   97 (236)
T cd07651          78 KFAKQIRQDLEEKLAAFASS   97 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998774

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3

Probab=95.07  E-value=0.86  Score=42.93  Aligned_cols=65  Identities=14%  Similarity=0.233  Sum_probs=55.2

Q ss_pred             CCChhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 016699          103 SGNTLS-KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEA  168 (384)
Q Consensus       103 ~~~~~g-~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~  168 (384)
                      .|.+|- .||-++|+..+.+-...-+.+......+++||+.|+.. |++-.++.+++|+.....+++
T Consensus        56 idqdYT~~al~~f~~~l~e~~~~ll~~~~~~~~~~~~pL~~f~k~-~i~~~Ke~rk~Fd~~q~kyD~  121 (214)
T cd07609          56 IDQDYTPLALKRFGDGLKDFWGGVLSALKGNDSLILDPLRSFVKS-DIRPYKELRKNFEYYQRKYDS  121 (214)
T ss_pred             hCchhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            334454 59999999999999777777777779999999999999 999999888889988888888

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins

Probab=94.99  E-value=3.6  Score=39.49  Aligned_cols=91  Identities=10%  Similarity=0.157  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccc--hhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016699           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE  124 (384)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~  124 (384)
                      |.|++-|+.+++.+..+.+.|..-.-    - -..+|  -+..|..-..++..-   ...+.|..++..+-.....|+..
T Consensus         4 ~~G~~~L~~r~k~g~~~~~el~~f~k----e-Ra~IEe~Yak~L~kLakk~~~~---~~~gt~~~~w~~i~~~~e~~a~~   75 (261)
T cd07648           4 NNGFDVLYHNMKHGQIAVKELADFLR----E-RATIEETYSKALNKLAKQASNS---SQLGTFAPLWLVLRVSTEKLSEL   75 (261)
T ss_pred             CcChHHHHHHHHhHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHhcCC---CCcCcHHHHHHHHHHHHHHHHHH
Confidence            67788888888888777777765431    0 01112  111223222333221   13456888999999999999999


Q ss_pred             HHHHHHHHhhhhchHHHHHhcC
Q 016699          125 RGNLLKALGTQVAEPLRAMVLG  146 (384)
Q Consensus       125 ~~~~~~~~~~~~l~PL~~~~~~  146 (384)
                      +..|...+. .++.||..+++.
T Consensus        76 H~~l~~~L~-~~~~~l~~~~~~   96 (261)
T cd07648          76 HLQLVQKLQ-ELIKDVQKYGEE   96 (261)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHH
Confidence            999999995 688888887653

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes

Probab=94.91  E-value=2.7  Score=37.80  Aligned_cols=96  Identities=17%  Similarity=0.206  Sum_probs=61.6

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhc--cCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 016699           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS--DNTCTSGNTLSKAALSYGRARAQMEKERG  126 (384)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~--e~~~~~~~~~g~al~~~g~a~~~l~~~~~  126 (384)
                      +++.|+.+++.+..+.++|..-.--   ....--|-+..|..-+.++..  +.|  + +.|..+...+......++..+.
T Consensus         1 g~~~l~~~~~~g~~~~~e~~~f~ke---Ra~iE~eYak~L~kLak~~~~~~~~~--~-~t~~~~w~~~~~e~~~~a~~h~   74 (191)
T cd07610           1 GFELLEKRTELGLDLLKDLREFLKK---RAAIEEEYAKNLQKLAKKFSKKPESG--K-TSLGTSWNSLREETESAATVHE   74 (191)
T ss_pred             CchHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcccCCC--C-CcHHHHHHHHHHHHHHHHHHHH
Confidence            3556777777666666665543311   000001111223333333332  223  3 5799999999999999999999


Q ss_pred             HHHHHHhhhhchHHHHHhcCCChHHH
Q 016699          127 NLLKALGTQVAEPLRAMVLGAPLDDA  152 (384)
Q Consensus       127 ~~~~~~~~~~l~PL~~~~~~~~lk~~  152 (384)
                      .|...+...+.+|++.+...  .+..
T Consensus        75 ~~a~~l~~~i~~~~~~~~~~--~~~~   98 (191)
T cd07610          75 ELSEKLSQLIREPLEKVKED--KEQA   98 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            99999999999999998885  5543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.

>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6

Probab=94.81  E-value=3.7  Score=38.78  Aligned_cols=94  Identities=11%  Similarity=0.138  Sum_probs=61.5

Q ss_pred             CcccccchHH-Hh-hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHH
Q 016699           34 SDNVVTDEAE-LH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAA  111 (384)
Q Consensus        34 ~~~~~~~e~e-~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al  111 (384)
                      +|++.-+|.- |- +|.+|-+|+.+.+..-.--+.+.-..              ..+|.++..-|..    ..+.+.++|
T Consensus        21 ~D~wFe~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~--------------~~~s~sl~~L~~~----e~t~L~~~l   82 (218)
T cd07662          21 VDDFFEHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDY--------------NRIGSSLYTLGTQ----DSTDICKFF   82 (218)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhccc----cchhHHHHH
Confidence            5677655432 22 88889888888887444433332221              1455555555553    345799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc
Q 016699          112 LSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (384)
Q Consensus       112 ~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~  145 (384)
                      .+++++..+|...+.....+=--.+.+-|+.|+-
T Consensus        83 ~~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r  116 (218)
T cd07662          83 LKVSELFDKTRKIEARVAADEDLKLSDLLKYYLR  116 (218)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            9999999999998887766655556666666543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays

>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein

Probab=94.80  E-value=4.3  Score=39.47  Aligned_cols=91  Identities=8%  Similarity=0.145  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccc--hhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016699           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE  124 (384)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~  124 (384)
                      |.|++-|+.++..++...+.+..-.-    - -..+|  -+..|..-+.+++.-   +..+.|..++..+-.....|+..
T Consensus        11 ~~G~~~L~~r~k~g~~~~kel~~f~k----e-Ra~iEe~Yak~L~kLak~~~~~---~~~Gt~~~~~~~~~~e~e~~a~~   82 (269)
T cd07673          11 NSGFDVLYHNMKHGQISTKELSDFIR----E-RATIEEAYSRSMTKLAKSASNY---SQLGTFAPVWDVFKTSTEKLANC   82 (269)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHhhhccC---CCcChHHHHHHHHHHHHHHHHHH
Confidence            66777888888877777766654331    0 01111  112333333343211   13345888899998899999999


Q ss_pred             HHHHHHHHhhhhchHHHHHhcC
Q 016699          125 RGNLLKALGTQVAEPLRAMVLG  146 (384)
Q Consensus       125 ~~~~~~~~~~~~l~PL~~~~~~  146 (384)
                      +..|...+. +.+.+|..|.+.
T Consensus        83 H~~la~~L~-~~~~~l~~~~~~  103 (269)
T cd07673          83 HLELVRKLQ-ELIKEVQKYGEE  103 (269)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHH
Confidence            999999998 488999999864

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]

Probab=94.67  E-value=0.052  Score=62.36  Aligned_cols=60  Identities=27%  Similarity=0.415  Sum_probs=54.8

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      +.-++.++|+|..-++.+.+.++||++++.....-+||..+++-+-|++|+.||+.+.+-
T Consensus       967 g~~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen  967 GKECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence            445788999999999999999999999998888899999999999999999999998764

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=94.29  E-value=5  Score=38.05  Aligned_cols=96  Identities=17%  Similarity=0.163  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC--CCCCCChhHHHHHHHHHHHHHHHHHH
Q 016699           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN--TCTSGNTLSKAALSYGRARAQMEKER  125 (384)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~--~~~~~~~~g~al~~~g~a~~~l~~~~  125 (384)
                      .+++.|+..++.+..|.++|..-.--   ....-.|-+..|..-+.+|..-.  +......+..++-.+-.....++..+
T Consensus         5 d~~~~l~~~~~~g~~~~~~l~~f~ke---Ra~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H   81 (251)
T cd07653           5 DQFDNLEKHTQKGIDFLERYGKFVKE---RAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQH   81 (251)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666655543211   11111112223333333333211  10023457788889988999999999


Q ss_pred             HHHHHHHhhhhchHHHHHhcC
Q 016699          126 GNLLKALGTQVAEPLRAMVLG  146 (384)
Q Consensus       126 ~~~~~~~~~~~l~PL~~~~~~  146 (384)
                      ..+...+..+++.||..|+..
T Consensus        82 ~~~a~~l~~~v~~~l~~~~~~  102 (251)
T cd07653          82 ELIAENLNSNVCKELKTLISE  102 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999873

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=94.06  E-value=0.043  Score=59.43  Aligned_cols=49  Identities=24%  Similarity=0.238  Sum_probs=40.5

Q ss_pred             eeccCCCCCCCCcccCCCCEEEEEeecCC-CeeEEEe--CCeeeEecCCCee
Q 016699          322 VVHPYQAESDVELTLSVGDYVVVRKVTNN-GWAEGEC--KGKAGWFPFGYIE  370 (384)
Q Consensus       322 alydy~a~~~~ELsf~~GdiI~V~~~~d~-gW~~G~~--~G~~G~fP~~YVe  370 (384)
                      +-.+|+...++.|-|..||.|+|++.... -||.|..  +++.|.||.+-|.
T Consensus       379 a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  379 ARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             eeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            33455568889999999999999998654 5999965  8899999998876

>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases

Probab=93.85  E-value=6.3  Score=37.63  Aligned_cols=98  Identities=14%  Similarity=0.075  Sum_probs=59.0

Q ss_pred             HHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC-C-CCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 016699           51 ERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN-T-CTSGNTLSKAALSYGRARAQMEKERGNL  128 (384)
Q Consensus        51 e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~-~-~~~~~~~g~al~~~g~a~~~l~~~~~~~  128 (384)
                      |-|..+++..-.|.++|.+-+=-   ....--|-+..|..-+.+|..-. + .++++....+...+=+--..++..++.+
T Consensus         8 ~~l~~~~~~ei~lLe~i~~F~re---Ra~iE~EYA~~L~~L~kq~~k~~~~~~~~~s~~~~sW~~iL~ete~~A~~~~~~   84 (237)
T cd07657           8 EALLKRQDAELRLLETMKKYMAK---RAKSDREYASTLGSLANQGLKIEAGDDLQGSPISKSWKEIMDSTDQLSKLIKQH   84 (237)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhCcCCCcccCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666666665543210   01011111223333334443321 1 1345666777888888888899999999


Q ss_pred             HHHHhhhhchHHHHHhcCCChHHHH
Q 016699          129 LKALGTQVAEPLRAMVLGAPLDDAR  153 (384)
Q Consensus       129 ~~~~~~~~l~PL~~~~~~~~lk~~~  153 (384)
                      ..++..++++||..++.  |++.++
T Consensus        85 ae~l~~~i~~~l~~l~~--~~~~~r  107 (237)
T cd07657          85 AEALESGTLDKLTLLIK--DKRKAK  107 (237)
T ss_pred             HHHHHhhhhHHHHHHHH--HHHHHH
Confidence            99999999999988887  466655

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=93.50  E-value=0.15  Score=36.69  Aligned_cols=36  Identities=31%  Similarity=0.668  Sum_probs=29.4

Q ss_pred             ccCCCCEEEEEeecCCC-eeEE-EeCCeeeEecCCCee
Q 016699          335 TLSVGDYVVVRKVTNNG-WAEG-ECKGKAGWFPFGYIE  370 (384)
Q Consensus       335 sf~~GdiI~V~~~~d~g-W~~G-~~~G~~G~fP~~YVe  370 (384)
                      .+..|+.|.|+.....+ |++. ..+|..||++..||.
T Consensus        18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            46788999999886655 9999 459999999999984

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B

Probab=93.38  E-value=0.2  Score=47.66  Aligned_cols=140  Identities=12%  Similarity=0.146  Sum_probs=98.1

Q ss_pred             HHHHhcCCC-CCCCcccccchHHHh-hhHHHHHHHHHhhhhhhhHH---------HHhhhhcccccCCCcccc-hhhHHH
Q 016699           22 VFKQFGGGG-YGGSDNVVTDEAELH-QHQRLERLYISTRAGKHFQR---------DIVRGVEGYIVTGSKQVE-IGTKLS   89 (384)
Q Consensus        22 ~~~~~~~~~-~~~~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~---------~i~r~~e~~~~~~~~~~e-~~~~l~   89 (384)
                      +=.++||+. -.=+|+|...|.++. +|...|+|+.+|..   |..         ++.+.++.-..+++++.| .|..+-
T Consensus         3 ~~Ek~G~aEkTe~d~df~~le~~~d~~~~~~e~i~~~~~~---~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~Lg~~M~   79 (229)
T cd07594           3 TEEKLGTAEKTEYDAHFENLLQRADKTKVWTEKILKQTEA---VLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQLGQAMI   79 (229)
T ss_pred             chhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCChhhhHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence            445677653 112899999999999 99999999999977   543         566666654455788766 233444


Q ss_pred             HHHHHhhccCCCCCC---ChhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 016699           90 EDSRKYGSDNTCTSG---NTLSKAALSYGRARAQMEK-ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (384)
Q Consensus        90 ~~m~~~g~e~~~~~~---~~~g~al~~~g~a~~~l~~-~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~e  165 (384)
                      +.-...|.+..  -+   ..||.|..++|+++..... +..+|+.-+..-.-.-++....-  -|-...+...||..|..
T Consensus        80 ~~g~~lg~~S~--~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~--RKkLe~rRLd~D~~k~r  155 (229)
T cd07594          80 EAGNDFGPGTA--YGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKE--RKLLENKRLDLDACKTR  155 (229)
T ss_pred             HHHhhCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            44444444432  22   2588999999999988764 68888888876554466666553  56666778889999998


Q ss_pred             HHH
Q 016699          166 AEA  168 (384)
Q Consensus       166 le~  168 (384)
                      +..
T Consensus       156 ~~k  158 (229)
T cd07594         156 VKK  158 (229)
T ss_pred             Hhh
Confidence            875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.

>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins

Probab=93.29  E-value=7.6  Score=36.85  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccc--hhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016699           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE  124 (384)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~  124 (384)
                      |.|++.|+.++..+..+.+.|..-.    .- ...+|  -+..|..-..+++..   ...+.|..++..+-.....|+..
T Consensus         4 ~~G~~~l~~r~~~g~~~~~el~~f~----ke-Ra~iE~eYak~L~kLak~~~~~---~e~gsl~~aw~~i~~e~e~~a~~   75 (239)
T cd07647           4 TTGFDTLLQRLKEGKKMCKELEDFL----KQ-RAKAEEDYGKALLKLSKSAGPG---DEIGTLKSSWDSLRKETENVANA   75 (239)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhccCCC---CccchHHHHHHHHHHHHHHHHHH
Confidence            6678889988888888887776522    11 11122  122333333333311   13346888999999999999999


Q ss_pred             HHHHHHHHhhhhchHHHHHhc
Q 016699          125 RGNLLKALGTQVAEPLRAMVL  145 (384)
Q Consensus       125 ~~~~~~~~~~~~l~PL~~~~~  145 (384)
                      +..|...+... +..|..|..
T Consensus        76 H~~la~~L~~~-v~~l~~~~~   95 (239)
T cd07647          76 HIQLAQSLREE-AEKLEEFRE   95 (239)
T ss_pred             HHHHHHHHHHH-HHHHHHHHH
Confidence            99999999886 466766654

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=93.24  E-value=0.13  Score=41.46  Aligned_cols=44  Identities=16%  Similarity=0.157  Sum_probs=30.5

Q ss_pred             CCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeec
Q 016699          329 ESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR  372 (384)
Q Consensus       329 ~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l  372 (384)
                      .+.-.|.+.+||++.|+...+.+-|.++. .|+.|+||.+++-..
T Consensus        28 ~G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~   72 (89)
T PF14603_consen   28 WGGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL   72 (89)
T ss_dssp             --TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred             CCcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence            34568999999999999999999889998 999999999998543

>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3

Probab=93.06  E-value=5.3  Score=37.89  Aligned_cols=125  Identities=15%  Similarity=0.218  Sum_probs=83.0

Q ss_pred             CcccccchHHHh-hhHHHHHHHHHhhhhhh-------------hHHHHhhh--hcccccC----CCcccchhhHHHHHHH
Q 016699           34 SDNVVTDEAELH-QHQRLERLYISTRAGKH-------------FQRDIVRG--VEGYIVT----GSKQVEIGTKLSEDSR   93 (384)
Q Consensus        34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~-------------~~~~i~r~--~e~~~~~----~~~~~e~~~~l~~~m~   93 (384)
                      +|+|...|.+|. +|..+|+|+.+|...-.             +..+|-+.  ..+|..+    |...++.|.-||++..
T Consensus         6 d~~f~~le~~~d~t~~~~~~l~~~t~~~LqpNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS~   85 (223)
T cd07615           6 DDDFQEMERKIDVTNKVVAELLSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLRYGRELGEEST   85 (223)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCCCCchhHHHHHHHHHHhhCCCCCh
Confidence            789999999999 99999999999987322             22244223  2345442    4555666555554332


Q ss_pred             HhhccCCCCCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 016699           94 KYGSDNTCTSGNTLSKAALSYGRARAQM-EKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (384)
Q Consensus        94 ~~g~e~~~~~~~~~g~al~~~g~a~~~l-~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~el  166 (384)
                       ||.-+.     .||.|.-++|+++..+ ..+..+|+.-+..-...-++....-  -|-...+...||..+..+
T Consensus        86 -~G~aL~-----~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~--RKkLe~rRLd~D~~K~r~  151 (223)
T cd07615          86 -FGNALL-----DVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHH--LKKLEGRRLDFDYKKKRQ  151 (223)
T ss_pred             -HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcC
Confidence             444443     4788999999998765 4678888888876555556655443  455556777888877655

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e

>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein

Probab=92.73  E-value=9.9  Score=36.64  Aligned_cols=91  Identities=11%  Similarity=0.129  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC-CCCCChhHHHHHHHHHHHHHHHHHH
Q 016699           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT-CTSGNTLSKAALSYGRARAQMEKER  125 (384)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~-~~~~~~~g~al~~~g~a~~~l~~~~  125 (384)
                      |.+++-||.+++.+....+.|..-.    .   .+..|-+.-+..|.+...-.. .+..++|..++..+-....+|+..+
T Consensus         4 ~~G~~~l~~r~k~g~~~~kel~~fl----k---eRa~IEe~Yak~L~klak~~~~~~e~Gtl~~~w~~~~~~~E~~a~~H   76 (261)
T cd07674           4 NAGFDVLYHNMKHGQISTKELADFV----R---ERAAIEETYSKSMSKLSKMASNGSPLGTFAPMWEVFRVSSDKLALCH   76 (261)
T ss_pred             CcChHHHHHHHHhHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHHH
Confidence            6677888888888777777765433    1   111111122222222222111 1123368899999999999999999


Q ss_pred             HHHHHHHhhhhchHHHHHhc
Q 016699          126 GNLLKALGTQVAEPLRAMVL  145 (384)
Q Consensus       126 ~~~~~~~~~~~l~PL~~~~~  145 (384)
                      ..|...+. ..+.|+..|..
T Consensus        77 ~~l~~~L~-~~~~~i~~~~~   95 (261)
T cd07674          77 LELMRKLN-DLIKDINRYGD   95 (261)
T ss_pred             HHHHHHHH-HHHHHHHHHHH
Confidence            99999887 55577776644

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=92.32  E-value=6.3  Score=37.16  Aligned_cols=170  Identities=21%  Similarity=0.227  Sum_probs=99.8

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC-CCCCCChhHHHHHH----------HHHH
Q 016699           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN-TCTSGNTLSKAALS----------YGRA  117 (384)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~-~~~~~~~~g~al~~----------~g~a  117 (384)
                      .|..|-..++.++.+.++|.+.++.|+..-.+..+.           |.+- -..|.+.||.+++.          +|.+
T Consensus         8 df~~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~~-----------g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G~a   76 (215)
T cd07593           8 EFLELEKEIELRKEGMERLHRSTEAYVEYLSKKKPL-----------LDDKDKCLPVEALGLVMINHGEEFPQDSEYGSC   76 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-----------ccccccCChHHHHHHHHHHHHhhCCCCChHHHH
Confidence            344555668888899999999999998752222221           1111 11245567777764          7788


Q ss_pred             HHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCC
Q 016699          118 RAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGN  197 (384)
Q Consensus       118 ~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~  197 (384)
                      ....+.++..+.. +...|..+++.-.-. +|.....-.|       +...           .|   |+ ....      
T Consensus        77 L~~~G~a~~kia~-~q~~f~~~~~~~~l~-pL~~~l~~~k-------~i~k-----------~R---Kk-Le~r------  126 (215)
T cd07593          77 LSKLGRAHCKIGT-LQEEFADRLSDTFLA-NIERSLAEMK-------EYHS-----------AR---KK-LESR------  126 (215)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHH-------HHHH-----------HH---HH-HHHH------
Confidence            8899999988877 578888888864333 5655542111       2233           22   11 1111      


Q ss_pred             CchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          198 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD  263 (384)
Q Consensus       198 ~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~  263 (384)
                         -..+..+.+++...+..-..+..|...+....+. +.-.+...+..|.+.+.++..+....++
T Consensus       127 ---RLdyD~~ksk~~kak~~~~~~eeElr~Ae~kfee-s~E~a~~~M~~i~~~e~e~~~~L~~lv~  188 (215)
T cd07593         127 ---RLAYDAALTKSQKAKKEDSRLEEELRRAKAKYEE-SSEDVEARMVAIKESEADQYRDLTDLLD  188 (215)
T ss_pred             ---HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence               1245666666655543323344445444444443 2344567888888887777777766643

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins

Probab=92.11  E-value=10  Score=35.35  Aligned_cols=66  Identities=14%  Similarity=0.071  Sum_probs=47.9

Q ss_pred             HHHHHHHHhhccCCC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc--CCChHHHH
Q 016699           87 KLSEDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL--GAPLDDAR  153 (384)
Q Consensus        87 ~l~~~m~~~g~e~~~---~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~--~~~lk~~~  153 (384)
                      ++|..+...|.-|..   ...+.|.+||...|++...|+....+--+.=-..|.+=|..|+-  + -++++-
T Consensus        44 k~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~Ig~l~~eQa~~D~~~l~E~L~eY~gll~-~~pdi~  114 (199)
T cd07626          44 KIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEIGELFAEQPKHDLIPLLDGLHEYKGLLS-TFPDII  114 (199)
T ss_pred             HHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHhHHH-hhhHHH
Confidence            677777777754441   24467999999999999999999888777776777776666543  2 256666

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for

>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A

Probab=91.95  E-value=7.3  Score=36.92  Aligned_cols=126  Identities=17%  Similarity=0.222  Sum_probs=84.8

Q ss_pred             CcccccchHHHh-hhHHHHHHHHHhhhhh-------------hhHHHHhhhh--cccccC----CCcccchhhHHHHHHH
Q 016699           34 SDNVVTDEAELH-QHQRLERLYISTRAGK-------------HFQRDIVRGV--EGYIVT----GSKQVEIGTKLSEDSR   93 (384)
Q Consensus        34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k-------------~~~~~i~r~~--e~~~~~----~~~~~e~~~~l~~~m~   93 (384)
                      +|+|...|.++. +|...|+|+.+|..--             .+..+|-...  .+|-.+    |-..++.|.-||++- 
T Consensus         6 d~df~~le~~~d~~~~~~~~l~~~~~~~lqpNP~~r~~~~~~~~~~K~~g~~~~~~~p~~~~~Lg~~M~~~g~elg~~S-   84 (223)
T cd07592           6 DDEFLEMERKTDATSKLVEDLIPKTKEYLQPNPAARAKLAMQNTYSKIRGQAKSTKYPQPEGLLGEVMLKYGRELGEDS-   84 (223)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccCcccCCCCcccHHHHHHHHHHhhcCCCC-
Confidence            789999999999 9999999999998733             2223441111  124322    455556655555543 


Q ss_pred             HhhccCCCCCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 016699           94 KYGSDNTCTSGNTLSKAALSYGRARAQME-KERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE  167 (384)
Q Consensus        94 ~~g~e~~~~~~~~~g~al~~~g~a~~~l~-~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele  167 (384)
                      .||.-+-     .+|.|..++|++..... .+..+|+.-+..-...-++....-  -|-...+...||..|..+.
T Consensus        85 ~~G~aL~-----~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~--RKkLe~rRLdyD~~k~k~~  152 (223)
T cd07592          85 NFGQALV-----EVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHH--RKKLEGRRLDYDYKKRKQG  152 (223)
T ss_pred             hHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcc
Confidence            3554443     58899999999987765 578888888886655555555553  5556667788998887653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=91.85  E-value=9.6  Score=34.49  Aligned_cols=65  Identities=9%  Similarity=0.240  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccC
Q 016699          117 ARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRET  194 (384)
Q Consensus       117 a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~  194 (384)
                      +...++.....+ ..+...+...++..+-. |++......+.+..+++.++.           .++|+-+.+.+....
T Consensus        93 ~l~~~~~~~~~i-~~~~~~~~~~~~~~vi~-pl~~~~~~~~~i~~~~kkr~~-----------~~ldyd~~~~k~~k~  157 (229)
T PF03114_consen   93 ALEKFGEAMQEI-EEARKELESQIESTVID-PLKEFLKEFKEIKKLIKKREK-----------KRLDYDSARSKLEKL  157 (229)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            344455555544 44445556666665544 566666555556666666666           666666666664433

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like

Probab=91.72  E-value=13  Score=35.87  Aligned_cols=101  Identities=15%  Similarity=0.112  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC---CCCCChhHHHHHHHHHHHHHHHHH
Q 016699           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT---CTSGNTLSKAALSYGRARAQMEKE  124 (384)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~---~~~~~~~g~al~~~g~a~~~l~~~  124 (384)
                      .+|+.|..-+..+..|.++|.+-.-   .....-.|-+.+|-.-+-+|+.--.   ..|..+...+...+=.....++..
T Consensus         5 Dqf~~~~k~~~~Gi~~l~~~~~F~k---eRa~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~~~s~~~~L~~~~~~a~q   81 (252)
T cd07675           5 DQFDNLDKHTQWGIDFLERYAKFVK---ERLEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCLSFYNILNELNDYAGQ   81 (252)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666666554321   1111122333455555566643221   112111223444555667778899


Q ss_pred             HHHHHHHHhhhhchHHHHHhcCCChHHHH
Q 016699          125 RGNLLKALGTQVAEPLRAMVLGAPLDDAR  153 (384)
Q Consensus       125 ~~~~~~~~~~~~l~PL~~~~~~~~lk~~~  153 (384)
                      ++.|..++..+++.||..+..  +++..|
T Consensus        82 ~e~~a~~l~~~v~~~l~~~~~--~l~~~r  108 (252)
T cd07675          82 REVVAEEMGHRVYGELMRYSH--DLKGER  108 (252)
T ss_pred             HHHHHHHHHHHHhHHHHHHHH--HHHHHH
Confidence            999999999999999999886  577776

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

Probab=91.42  E-value=14  Score=35.73  Aligned_cols=38  Identities=26%  Similarity=0.219  Sum_probs=33.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Q 016699          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRA  142 (384)
Q Consensus       105 ~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~  142 (384)
                      +++..++--|-.-...|+..+..+-..+....++|++.
T Consensus        60 GTL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~   97 (258)
T cd07681          60 GTLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRA   97 (258)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36888888888889999999999999999999999977

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to

>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]

Probab=91.01  E-value=5.9  Score=39.19  Aligned_cols=159  Identities=13%  Similarity=0.138  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 016699           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (384)
Q Consensus        87 ~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~el  166 (384)
                      -+|++++..|..-++   ..-..|..+||+.|+.|++-.-..++.+.- .+.-|..|+.. -+-|.+-..|+|--..-+.
T Consensus       171 ~FGd~F~~i~vhEpQ---q~AsEAF~~Fgd~HR~ieK~g~~~~k~ikp-mlsDL~tYlnk-aiPDTrLTikkYlDvKfeY  245 (429)
T KOG3651|consen  171 EFGDIFCDIAVHEPQ---QTASEAFSSFGDKHRMIEKKGSESAKPIKP-MLSDLQTYLNK-AIPDTRLTIKKYLDVKFEY  245 (429)
T ss_pred             HhhhhhhhhhccCcc---hhHHHHHHHHHHHHHHHHHhccchhhhhhH-HHHHHHHHHhc-cCCcchhhhHHhhhhhHHH
Confidence            568888888877653   235689999999999999988877776654 45668888888 4777775555564444333


Q ss_pred             HHhhhhhccCCcccHHHHHHHhhhhccCCCCCch------------HHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016699          167 EAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDL------------ALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES  234 (384)
Q Consensus       167 e~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~------------~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~  234 (384)
                      -+               |.-+ -|-.++......            .=++|.-.-=-+|++..+..|-..+..-|..+++
T Consensus       246 LS---------------YCLK-vKEMDDEE~~f~AlqEPLYRVeTGNYEYRliLRCRQeaRarF~kmR~DVleKmELLdq  309 (429)
T KOG3651|consen  246 LS---------------YCLK-VKEMDDEEVEFVALQEPLYRVETGNYEYRLILRCRQEARARFMKMRDDVLEKMELLDQ  309 (429)
T ss_pred             HH---------------HHHh-hhhccchhhceeeecCceeEeecCCeeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33               3211 122222111100            0011111111122222222332333344433333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          235 QQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  266 (384)
Q Consensus       235 qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~  266 (384)
                      .--+=...+|..|++....||+.|..+|.+..
T Consensus       310 KHv~Di~~qL~~l~~tmak~~~~c~~~L~~~~  341 (429)
T KOG3651|consen  310 KHVRDIAQQLAILAKTMAKCQQECAEILKERI  341 (429)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            21122256899999999999999999987754

>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

Probab=90.85  E-value=16  Score=35.17  Aligned_cols=89  Identities=17%  Similarity=0.126  Sum_probs=56.0

Q ss_pred             HHHHHHhhhhhhhHHHHhhhhcc--cccCCCcccchhhHHHHHHHHhhccC-CCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 016699           51 ERLYISTRAGKHFQRDIVRGVEG--YIVTGSKQVEIGTKLSEDSRKYGSDN-TCTSGNTLSKAALSYGRARAQMEKERGN  127 (384)
Q Consensus        51 e~l~~~~~~~k~~~~~i~r~~e~--~~~~~~~~~e~~~~l~~~m~~~g~e~-~~~~~~~~g~al~~~g~a~~~l~~~~~~  127 (384)
                      +.+..+++.+..|.++|..-.--  -|...|     +..|..-..+|..-. +....+.+..++..+-.-...++..+..
T Consensus         8 ~~~~kr~~~G~~~~~el~~f~kERa~IE~~Y-----ak~L~kLakk~~~~~~~~~e~gsl~~aw~~~~~e~e~~a~~H~~   82 (258)
T cd07655           8 KRTVKRIEDGHKLCDDLMKMVQERAEIEKAY-----AKKLKEWAKKWRDLIEKGPEYGTLETAWKGLLSEAERLSELHLS   82 (258)
T ss_pred             hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            35666677777777666654311  011111     123333333432211 0012236888999999999999999999


Q ss_pred             HHHHHhhhhchHHHHHh
Q 016699          128 LLKALGTQVAEPLRAMV  144 (384)
Q Consensus       128 ~~~~~~~~~l~PL~~~~  144 (384)
                      +...+...+..||..+.
T Consensus        83 l~~~L~~~v~~~i~~~~   99 (258)
T cd07655          83 IRDKLLNDVVEEVKTWQ   99 (258)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998876

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce

>KOG3812 consensus L-type voltage-dependent Ca2+ channel, beta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=90.75  E-value=0.11  Score=51.48  Aligned_cols=36  Identities=19%  Similarity=0.473  Sum_probs=31.4

Q ss_pred             CCCcccCCCCEEEEEeecCCCeeEEEe---CCeeeEecC
Q 016699          331 DVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPF  366 (384)
Q Consensus       331 ~~ELsf~~GdiI~V~~~~d~gW~~G~~---~G~~G~fP~  366 (384)
                      ...++|...|.|-|-++.+++||.|+.   ++..||+|+
T Consensus        79 g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   79 GHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             CceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence            335789999999999999999999987   667899997

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=90.38  E-value=0.42  Score=35.16  Aligned_cols=35  Identities=34%  Similarity=0.485  Sum_probs=28.8

Q ss_pred             ccCCCCEEEEEeecCCCeeEEEeC-CeeeEecCCCe
Q 016699          335 TLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYI  369 (384)
Q Consensus       335 sf~~GdiI~V~~~~d~gW~~G~~~-G~~G~fP~~YV  369 (384)
                      .+..|+.+.|+...+.+|+..... |..||+|..++
T Consensus        26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            466899999988765599999884 99999987765

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.67  E-value=0.34  Score=45.36  Aligned_cols=38  Identities=26%  Similarity=0.546  Sum_probs=31.8

Q ss_pred             ccCCCCEEEEEeecC-CCeeEEEe-CCeeeEecCCCeeec
Q 016699          335 TLSVGDYVVVRKVTN-NGWAEGEC-KGKAGWFPFGYIERR  372 (384)
Q Consensus       335 sf~~GdiI~V~~~~d-~gW~~G~~-~G~~G~fP~~YVe~l  372 (384)
                      ++..|+.++|+...+ .||...+. +|+.|||+..|+...
T Consensus        49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~   88 (206)
T PRK10884         49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT   88 (206)
T ss_pred             EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence            467899999998765 68999986 899999999998653

>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase

Probab=88.96  E-value=22  Score=34.00  Aligned_cols=148  Identities=18%  Similarity=0.177  Sum_probs=69.5

Q ss_pred             HHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 016699           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (384)
Q Consensus        87 ~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~el  166 (384)
                      .+|..+.+++.|+-..+..-+..-..+.-.+.+.+...+..|...+....            ..++...++.|+.+.+..
T Consensus        80 ~isk~~~~~Aeeln~~~~~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t------------~~eveK~Kk~Y~~~c~~~  147 (237)
T cd07685          80 TLSQVLRKHAEDLNAGPLSKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTT------------QQDIEKLKSQYRSLAKDS  147 (237)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence            36777777777765222233333333444444455555555554444110            124445667777777777


Q ss_pred             HHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          167 EAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIA  246 (384)
Q Consensus       167 e~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a  246 (384)
                      ++           -|    .+-.|   .+    .+.+.+.+.+|+.+.....-.+.++=.-++..+....+..+.+.|-.
T Consensus       148 e~-----------AR----~K~ek---as----~~K~~~K~~EKy~~m~~KL~~~hN~YlL~I~~An~~kdkyy~q~lP~  205 (237)
T cd07685         148 AQ-----------AK----RKYQE---AS----KDKDRDKAKEKYVKSLWKLYALHNEYVLAVRAAQLHHQHHYQRILPG  205 (237)
T ss_pred             HH-----------HH----HHHHh---cc----cchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccHH
Confidence            77           33    11112   11    11245556666665543333333332222222222333344455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 016699          247 MVEAERTYHQRVLQILDQLEGE  268 (384)
Q Consensus       247 ~veAql~Yh~q~~~iL~qL~~e  268 (384)
                      +.+...+-+.....+|..+-.+
T Consensus       206 LLd~lQ~lnE~~v~~Ln~il~e  227 (237)
T cd07685         206 LLESLQSLHEEMVLILKEILQE  227 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555444443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]

Probab=88.15  E-value=0.31  Score=51.62  Aligned_cols=61  Identities=26%  Similarity=0.355  Sum_probs=42.4

Q ss_pred             CcceeEeeccCCCCCC------CCcccCCCCEEEEEeec-CCCeeEEEe--CCeeeEecCCCeeeccCCC
Q 016699          316 GYFLGEVVHPYQAESD------VELTLSVGDYVVVRKVT-NNGWAEGEC--KGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       316 ~~~~a~alydy~a~~~------~ELsf~~GdiI~V~~~~-d~gW~~G~~--~G~~G~fP~~YVe~l~~~p  376 (384)
                      +.++-.++-.|.+..+      .-|.+.+||++.+..-. .+.||.|+.  .+..||||++-|.....+|
T Consensus       603 GLpkm~~vq~ysg~p~Pag~igP~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vp  672 (865)
T KOG2996|consen  603 GLPKMDVVQNYSGIPPPAGSIGPRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVP  672 (865)
T ss_pred             CCcchhhhhccCCCCCCCccCCCceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCC
Confidence            3344455555554333      34778999999876653 567999998  5678999999988655444

>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase

Probab=87.94  E-value=26  Score=33.54  Aligned_cols=78  Identities=18%  Similarity=0.175  Sum_probs=48.0

Q ss_pred             hHHHHHHHHhhccCC--CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHH
Q 016699           86 TKLSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR  163 (384)
Q Consensus        86 ~~l~~~m~~~g~e~~--~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r  163 (384)
                      ..|..-+.+|..-..  ....+....+...|=+--..|+..+..+...+....+..|..++..  .   +..+|.|+..+
T Consensus        40 ~~L~~L~kq~~kk~~~~~~~~s~v~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~~--~---~~~~k~~~~~~  114 (234)
T cd07686          40 STLQNLCNQVDKESTSQLDYVSNVSKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIKD--K---QQVKKSYIGVH  114 (234)
T ss_pred             HHHHHHHHHhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--H---HHHHHHHHHHH
Confidence            345555555533211  0123444456666667777788888888888888888888777652  2   34456666666


Q ss_pred             HHHHH
Q 016699          164 QEAEA  168 (384)
Q Consensus       164 ~ele~  168 (384)
                      ++++.
T Consensus       115 ~kl~~  119 (234)
T cd07686         115 QQIEA  119 (234)
T ss_pred             HHHHH
Confidence            66666

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran

>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7

Probab=87.51  E-value=27  Score=33.28  Aligned_cols=92  Identities=20%  Similarity=0.158  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHhhhhc-c-cccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016699           47 HQRLERLYISTRAGKHFQRDIVRGVE-G-YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE  124 (384)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e-~-~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~  124 (384)
                      |.||+-||.++..++.+.++|..-.- - -|...|.+  ...+|+... .-|.     ..+.|..++-.+-.....|+..
T Consensus         4 ~~Gf~vl~~~~k~g~~~~~el~~fl~ERa~IEe~Yak--~L~klak~~-~~~~-----e~Gtl~~sw~~~~~e~E~~a~~   75 (233)
T cd07649           4 VTGFEILLQKQLKGKQMQKEMAEFIRERIKIEEEYAK--NLSKLSQSS-LAAQ-----EEGTLGEAWAQVKKSLADEAEV   75 (233)
T ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhh-cCCC-----CCChHHHHHHHHHHHHHHHHHH
Confidence            56788888888888887777765431 1 00111111  111343211 1122     3347999999999999999999


Q ss_pred             HHHHHHHHhhhhchHHHHHhcC
Q 016699          125 RGNLLKALGTQVAEPLRAMVLG  146 (384)
Q Consensus       125 ~~~~~~~~~~~~l~PL~~~~~~  146 (384)
                      +..|...+...+..||+.|..+
T Consensus        76 H~~la~~L~~ev~~~l~~f~~~   97 (233)
T cd07649          76 HLKFSSKLQSEVEKPLLNFREN   97 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999885

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=86.55  E-value=1.3  Score=32.04  Aligned_cols=34  Identities=26%  Similarity=0.558  Sum_probs=27.8

Q ss_pred             ccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCe
Q 016699          335 TLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI  369 (384)
Q Consensus       335 sf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YV  369 (384)
                      .+..|.++.|+. ...+|.+.+.+|..||++.+.|
T Consensus        20 ~l~~g~~v~v~~-~~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   20 RLEPGVPVRVIE-CRGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EECCCCEEEEEE-ccCCeEEEEECCeEEeEEeeec
Confidence            466788888874 4778999999999999998765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

Probab=86.28  E-value=33  Score=33.06  Aligned_cols=101  Identities=17%  Similarity=0.161  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC--C--CCCChhHHHHHHHHHHHHHHHH
Q 016699           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT--C--TSGNTLSKAALSYGRARAQMEK  123 (384)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~--~--~~~~~~g~al~~~g~a~~~l~~  123 (384)
                      .+++.|..-+..+..|.++|..-.=-   ....--|-+.+|..-+.+|..--.  .  .|...+=.|..-+=.-...++.
T Consensus         5 D~~~~l~k~~~~Gi~~~~~i~~f~kE---Ra~IEkeYakkL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~   81 (253)
T cd07676           5 DQFDNLEKHTQWGIEVLEKYIKFVKE---RTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAG   81 (253)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHH
Confidence            34555665566666666555543310   011111122345555555543311  0  0111122233333344448899


Q ss_pred             HHHHHHHHHhhhhchHHHHHhcCCChHHHH
Q 016699          124 ERGNLLKALGTQVAEPLRAMVLGAPLDDAR  153 (384)
Q Consensus       124 ~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~  153 (384)
                      .++.|-.++..++++||..++..  ++.-+
T Consensus        82 ~H~~~~~~L~~~v~~~l~~~~~~--~k~~r  109 (253)
T cd07676          82 QHEVISENLASQIIVELTRYVQE--LKQER  109 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            99999999999999999988873  44444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.54  E-value=0.91  Score=46.27  Aligned_cols=53  Identities=26%  Similarity=0.318  Sum_probs=43.4

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeee
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIER  371 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~  371 (384)
                      -..|+++..+....|+.+++||+|.|-.--=+|...|.+  .++.|+||+-=|+.
T Consensus       511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre  565 (580)
T KOG3705|consen  511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE  565 (580)
T ss_pred             ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence            368999999999999999999999887655556667765  78999999966654

>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2

Probab=81.50  E-value=51  Score=31.50  Aligned_cols=92  Identities=11%  Similarity=0.117  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC--CCCCCChhHHHHHHHHHHHHHHHHH
Q 016699           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN--TCTSGNTLSKAALSYGRARAQMEKE  124 (384)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~--~~~~~~~~g~al~~~g~a~~~l~~~  124 (384)
                      +.+++.|+.+++.++.+.+.|..-.=       -+..|-+.-+..|.+...-.  |....+.+-.++..+-.-...|+..
T Consensus         4 ~~Gy~~l~~r~~~g~~~~~el~~f~k-------ERA~IE~~YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a~~   76 (240)
T cd07672           4 TGGYDCIIQHLNDGRKNCKEFEDFLK-------ERASIEEKYGKELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVGQS   76 (240)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHH
Confidence            56788999999988888887766441       12222223333333322211  2123347889999999999999999


Q ss_pred             HHHHHHHHhhhhchHHHHHhcC
Q 016699          125 RGNLLKALGTQVAEPLRAMVLG  146 (384)
Q Consensus       125 ~~~~~~~~~~~~l~PL~~~~~~  146 (384)
                      +..|...+... +.||..|.+.
T Consensus        77 H~~la~~L~~~-~~~~~~f~~~   97 (240)
T cd07672          77 HIQLAQTLRDE-AKKMEDFRER   97 (240)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHH
Confidence            99999999986 5588888553

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca

>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein

Probab=81.09  E-value=50  Score=31.17  Aligned_cols=90  Identities=18%  Similarity=0.218  Sum_probs=58.0

Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC---CCCCCChhHHHHHHHHHHHHHHHHHHH
Q 016699           50 LERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN---TCTSGNTLSKAALSYGRARAQMEKERG  126 (384)
Q Consensus        50 ~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~---~~~~~~~~g~al~~~g~a~~~l~~~~~  126 (384)
                      .+=|..+++.+|.+.++|..-.=       -+.+|-+.-+.-+.+.....   +.+..+.+..+...+-..-..++..+.
T Consensus         7 ~~~l~~Rl~~~~~~~~el~~~~k-------ERa~IE~~Yak~L~kLakk~~~~~~~e~g~~~~~w~~i~~e~e~~a~~H~   79 (228)
T cd07650           7 TEILRIRLSQIKLVNTELADWLQ-------ERRRLERQYVQGLRKLARRNEPLNKSLLGVFQNPWLTIESETEFIAASHG   79 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677777766666655431       11222222344444444332   111222445788888888899999999


Q ss_pred             HHHHHHhhhhchHHHHHhcC
Q 016699          127 NLLKALGTQVAEPLRAMVLG  146 (384)
Q Consensus       127 ~~~~~~~~~~l~PL~~~~~~  146 (384)
                      .+...+...+..||+.|...
T Consensus        80 ~la~~l~~~ve~~l~~~~~~   99 (228)
T cd07650          80 ELAQRIETDVEEPLRDFATS   99 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999987

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]

Probab=80.43  E-value=3  Score=41.87  Aligned_cols=56  Identities=20%  Similarity=0.199  Sum_probs=48.2

Q ss_pred             ceeEeeccCC--CCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          318 FLGEVVHPYQ--AESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       318 ~~a~alydy~--a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ..+++.-+|.  +.+.++|-+..||+|.+++....|-|.|-++++.|-|+.-||..+.
T Consensus       137 ~~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s  194 (361)
T KOG4384|consen  137 GRARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVIS  194 (361)
T ss_pred             ccccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceecccc
Confidence            3456666665  5788899999999999999999999999999999999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		2e-05
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		3e-05
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		4e-05
2da9_A	70	Solution Structure Of The Third Sh3 Domain Of Sh3-D		4e-05
1uff_A	93	Solution Structure Of The First Sh3 Domain Of Human		5e-05
2dlm_A	68	Solution Structure Of The First Sh3 Domain Of Human		6e-05
2nwm_A	65	Solution Structure Of The First Sh3 Domain Of Human		7e-05
2ydl_A	69	Crystal Structure Of Sh3c From Cin85 Length = 69		7e-05
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		7e-05
2k6d_A	62	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		7e-05
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		8e-05
2a28_A	54	Atomic-Resolution Crystal Structure Of The Second S		8e-05
2d1x_A	66	The Crystal Structure Of The Cortactin-Sh3 Domain A		9e-05
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		9e-05
1x69_A	79	Solution Structures Of The Sh3 Domain Of Human Src		1e-04
3ulr_B	65	Lysozyme Contamination Facilitates Crystallization		1e-04
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		1e-04
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		1e-04
2cub_A	88	Solution Structure Of The Sh3 Domain Of The Human C		3e-04
2js0_A	61	Solution Structure Of Second Sh3 Domain Of Adaptor		3e-04
4e6r_A	58	Crystal Structure Of A Cytoplasmic Protein Nck2 (Nc		3e-04
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		4e-04
2bz8_A	58	N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Pepti		5e-04
2frw_A	57	Solution Structure Of The Second Sh3 Domain Of Huma		8e-04

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + ++ Y A++  ELT   GD ++V +    GW EGE  GK GW P  Y++
Sbjct: 7   KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + ++ Y A++  ELT   GD ++V +    GW EGE  GK GW P  Y++
Sbjct: 8   KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 57

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 319 LGEVVHP---YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           LG VV     +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+
Sbjct: 3   LGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56

>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 (Regulator Of Ubiquitous Kinase, Ruk) Length = 70

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFG 367
           GS+ + G +  +V+ PY+A++D ELT+  GD V +  +   + GW EGE  G+ G FP  
Sbjct: 1   GSSGSSGDYC-KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDN 59
Query: 368 YIE 370
           +++
Sbjct: 60  FVK 62

>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Intersectin2 (Kiaa1256) Length = 93

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFG 367
           GS+ + GY     ++P++A +  E++ + GD + V  + V   GW  G  +G  GWFP  
Sbjct: 1   GSSGSSGY---RALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCN 57
Query: 368 YIER 371
           Y+E+
Sbjct: 58  YVEK 61

>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin Length = 68

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           +QA+S  ELTL  GD V + K  +  W EGE  G+ G FP  Y+E
Sbjct: 16  FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 60

>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin And Its Interaction With The Peptides From Vinculin Length = 65

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           +QA+S  ELTL  GD V + K  +  W EGE  G+ G FP  Y+E
Sbjct: 10  FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54

>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85 Length = 69

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 321 EVVHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYIE 370
           +V+ PY+A++D ELT+  GD V +  +   + GW EGE  G+ G FP  +++
Sbjct: 6   KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 321 EVVHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYIE 370
           +V+ PY+A++D ELT+  GD V +  +   + GW EGE  G+ G FP  +++
Sbjct: 13  KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64

>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 62

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 321 EVVHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYIE 370
           +V+ PY+A++D ELT+  GD V +  +   + GW EGE  G+ G FP  +++
Sbjct: 7   KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 58

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+
Sbjct: 17  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV 60

>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3 Domain Of Yeast Bzz1 Determined From A Pseudomerohedrally Twinned Crystal Length = 54

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 321 EVVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGY 368
           E ++ Y+A+ D E+++  GD + V+R    +GW  GEC G  G FP  Y
Sbjct: 4   EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSY 52

>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Peptide Complex Length = 66

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           GS + +G      ++ YQA  D E++    D +   ++ ++GW  G CKG+ G FP  Y+
Sbjct: 4   GSENDLG-ITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 62
Query: 370 ERR 372
           E R
Sbjct: 63  ELR 65

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+
Sbjct: 15  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src Substrate Cortactin Length = 79

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 372
           ++ YQA  D E++    D +   ++ ++GW  G CKG+ G FP  Y+E R
Sbjct: 23  LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 72

>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A Hetero- Trimericcortactin:arg:lysozyme Complex Length = 65

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 372
           ++ YQA  D E++    D +   ++ ++GW  G CKG+ G FP  Y+E R
Sbjct: 15  LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+
Sbjct: 15  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           GS+ + G  L + ++ +QA  D EL L  GD V++ +    GW  G   GK G FP  Y+
Sbjct: 1   GSSGSSGR-LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59
Query: 370 E 370
           E
Sbjct: 60  E 60

>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Cytoplasmic Protein Nck1 Length = 88

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           Y AE + EL+L  G  V+V +  ++GW  G   G+ GWFP  Y+
Sbjct: 26  YMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69

>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck Length = 61

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           Y AE + EL+L  G  V+V +  ++GW  G   G+ GWFP  Y+
Sbjct: 13  YMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56

>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2) From Homo Sapiens At 2.20 A Resolution Length = 58

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           V   Y AE + EL+L  G  V V +  ++GW  G   G+ GWFP  Y+
Sbjct: 6   VXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           ++  ++ EL++  GD + V +V   GW EG   G+ GWFP  Y+
Sbjct: 19  FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide Length = 58

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           YQA+ D ELT+SVG+ +   +  + GW EG+  G+ G FP  ++
Sbjct: 10  YQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53

>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Adaptor Protein Nck2 Length = 57

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           Y AE + EL+L  G  V V +  ++GW  G   G+ GWFP  Y+
Sbjct: 9   YVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	3e-14
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	4e-13
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	9e-13
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	2e-12
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	3e-12
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	4e-12
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	6e-12
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	7e-12
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	7e-12
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	1e-11
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	2e-09
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-11
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-06
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	1e-11
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	1e-11
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	1e-11
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	1e-11
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	1e-11
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	2e-11
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	2e-11
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	2e-11
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	2e-11
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	3e-11
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	3e-11
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	3e-11
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	4e-11
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	4e-11
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	4e-11
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	5e-11
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	5e-11
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	6e-11
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	6e-11
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	8e-11
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	8e-11
3u23_A	65	CD2-associated protein; structural genomics, struc	8e-11
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	8e-11
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	9e-11
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	1e-10
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	1e-10
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	2e-10
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	2e-10
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	2e-10
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	2e-10
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	2e-10
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	2e-10
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	2e-10
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	3e-10
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	3e-10
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	3e-10
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	1e-05
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	3e-10
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	3e-10
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	4e-10
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	4e-10
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	4e-10
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	4e-10
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	5e-10
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	5e-10
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	5e-10
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	5e-10
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	5e-10
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	6e-10
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	6e-10
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	7e-10
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	7e-10
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	7e-10
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	8e-10
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	8e-10
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	8e-10
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	8e-10
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	1e-09
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	1e-09
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	1e-09
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	1e-09
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	1e-09
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	2e-09
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	2e-09
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	4e-08
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	2e-09
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	2e-09
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-09
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	2e-09
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	3e-09
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	3e-09
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	3e-09
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	3e-09
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	4e-09
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	5e-09
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	6e-09
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	7e-09
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	8e-09
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	8e-09
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	9e-09
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	1e-08
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	1e-08
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-08
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	1e-08
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	2e-08
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	2e-08
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	2e-08
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	2e-08
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	2e-08
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-08
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	2e-08
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	2e-08
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	3e-08
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	3e-08
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	3e-08
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	3e-08
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-08
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	4e-08
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	5e-08
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	5e-08
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	6e-08
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	6e-08
1wxb_A	68	Epidermal growth factor receptor pathway substrate	6e-08
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	7e-08
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	7e-08
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	9e-08
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	9e-08
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-07
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	2e-07
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	2e-07
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	2e-07
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	2e-07
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	3e-07
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	4e-07
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	4e-07
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	5e-07
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	5e-07
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	7e-07
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	8e-07
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	9e-07
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	1e-06
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	1e-06
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	1e-06
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	1e-06
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-06
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	1e-06
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	1e-06
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	2e-06
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	2e-06
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	2e-06
1awj_A	77	ITK; transferase, regulatory intramolecular comple	2e-06
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	2e-06
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	3e-06
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	4e-06
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	4e-06
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	4e-06
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	5e-06
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	7e-06
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	1e-05
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	1e-05
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	1e-05
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	1e-05
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-05
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	2e-05
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	3e-05
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	4e-05
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	4e-05
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	4e-05
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	4e-05
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	4e-05
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	4e-05
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	4e-05
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	7e-05
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	7e-05
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	7e-05
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	9e-05
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	9e-05
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-04
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	2e-04
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	2e-04
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	3e-04
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	4e-04
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	4e-04
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	4e-04
1i07_A	60	Epidermal growth factor receptor kinase substrate	5e-04
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	6e-04

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 66.2 bits (162), Expect = 3e-14
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 319 LGEVVHPY--QAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             + +      A     L L VGD V V ++  NG  EGE  G+ G FPF +++
Sbjct: 3   FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 56

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 63.7 bits (155), Expect = 4e-13
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 24/93 (25%)

Query: 278 AAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLS 337
           +  + P PS       P + +                             A     L L 
Sbjct: 3   SGSSGPLPST---QNGPVFAKAIQKR---------------------VPCAYDKTALALE 38

Query: 338 VGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           VGD V V ++  NG  EGE  G+ G FPF +++
Sbjct: 39  VGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 71

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 61.9 bits (151), Expect = 9e-13
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 316 GYFLGEVVHPY--QAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           G     V+      A     L L VG+ V V K+  +G  EGEC GK G FPF ++ 
Sbjct: 5   GPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVR 61

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           V   Y AE + EL+L  G  V+V +  ++GW  G   G+ GWFP  Y+ 
Sbjct: 22  VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 70

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 20/69 (28%), Positives = 34/69 (49%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           GS+ + G     VV  Y+ + + EL+L  G+ V V +   +GW       + GW P  Y+
Sbjct: 1   GSSGSSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYL 60

Query: 370 ERRDRVLAS 378
           E ++   +S
Sbjct: 61  EAQNSGPSS 69

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
               ++  ++ EL++  GD + V +V   GW EG   G+ GWFP  Y+ 
Sbjct: 15  ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVR 63

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 59.6 bits (145), Expect = 6e-12
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           GS+ + G      ++ Y A++  EL LS GD + V     +GW   E  G+ G+ P  Y+
Sbjct: 1   GSSGSSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYL 60

Query: 370 E 370
           E
Sbjct: 61  E 61

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 59.1 bits (144), Expect = 7e-12
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           +   +QA+S  ELTL  GD V + K  +  W EGE  G+ G FP  Y+E
Sbjct: 6   LKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 59.7 bits (145), Expect = 7e-12
 Identities = 14/62 (22%), Positives = 20/62 (32%)

Query: 309 NGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGY 368
           +GS+   G                 L L  GD + +      G   G    K G F F Y
Sbjct: 3   SGSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIY 62

Query: 369 IE 370
           ++
Sbjct: 63  VD 64

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 62.3 bits (151), Expect = 1e-11
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           GS + +       +  Y+  S  E+ LS GD V V + + +GW   + K K GW P  ++
Sbjct: 4   GSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 63

Query: 370 E 370
           E
Sbjct: 64  E 64

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 293 PPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGW 352
           P ++  +  + +                  +  Y A    E++L  G+ V V     +GW
Sbjct: 59  PASF--LEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGW 116

Query: 353 AEGECKGKAGWFPFGYIERRDRVLAS 378
                    G+FP  Y+++  + ++ 
Sbjct: 117 WVIRKDDVTGYFPSMYLQKSGQDVSQ 142

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 64.2 bits (155), Expect = 1e-11
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 279 APTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSV 338
             + P P     P P A   VN    +  +      +            A     L L V
Sbjct: 206 EGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQK-----RVPNAYDKTALALEV 260

Query: 339 GDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           G+ V V K+  +G  EGEC GK G FPF ++ 
Sbjct: 261 GELVKVTKINVSGQWEGECNGKRGHFPFTHVR 292

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 49.2 bits (116), Expect = 1e-06
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIE 370
             +  +    + +L    GD + +R      W   E  +GK G  P  Y+E
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 188

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA-----GWFPFGYIE 370
           +V   Y A    +L+L+ G  +++ K   +GW +GE + +      GWFP  +++
Sbjct: 11  QVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 322 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           V + Y A  D ELT+ VG+ +  V+K+   GW EGE  G+ G FP  +++
Sbjct: 6   VEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVK 55

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             Y+ ++  +L  + GD +++R+  +  W +GE  G +G FP   +E
Sbjct: 14  CNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVE 60

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 16/69 (23%), Positives = 24/69 (34%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           GS+ + G         YQ   D E++   G  V V +   +GW         GW P  Y+
Sbjct: 1   GSSGSSGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYL 60

Query: 370 ERRDRVLAS 378
              +     
Sbjct: 61  VLDENEQPD 69

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 57.9 bits (141), Expect = 1e-11
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 321 EVVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           E ++ Y+A+ D E+++  GD + V+R    +GW  GEC G  G FP  Y +
Sbjct: 4   EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 305 SQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWF 364
              H+   D M     E +  +   S +EL    GD + +    N  W EG  +G  G F
Sbjct: 6   HHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIF 65

Query: 365 PFGYIE 370
           P  +++
Sbjct: 66  PLSFVK 71

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
               +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+ 
Sbjct: 9   AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             ++A++  EL L  GD V + K  +  W EGE  G+ G FP  YIE
Sbjct: 14  FDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             Y+A    +L    GD ++V    N  W EGE KGK G FP  ++E
Sbjct: 12  FSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
               +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+ 
Sbjct: 11  AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
           V+  +  E+  EL +  G+ V V K  N+ WA     G+ G  P  Y+E 
Sbjct: 12  VLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEP 61

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 57.1 bits (139), Expect = 3e-11
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             +   S +EL    GD + +    N  W EG  +G  G FP  +++
Sbjct: 11  FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 57.2 bits (139), Expect = 4e-11
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIER 371
            +  +    + EL L V D ++V     + W E      G  G FP  Y   
Sbjct: 8   AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 59

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + ++ E+D EL    GD + +    +  W EG   G++G+FP  Y++
Sbjct: 20  YDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQ 66

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
            V PY ++S  E+    G  V V +    GW      GK GW P  Y+++
Sbjct: 13  TVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKK 62

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 56.9 bits (138), Expect = 5e-11
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + ++ E+  EL    GD + +    +  W EG   G++G+FP  Y+E
Sbjct: 10  YDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVE 56

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 56.8 bits (138), Expect = 5e-11
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           V   YQA+ D ELT+SVG+ +   +  + GW EG+  G+ G FP  ++ 
Sbjct: 6   VEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVR 54

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 311 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           S  +           Y   +  EL+   G  +++ +  ++ W EG   G  G  P  YI 
Sbjct: 3   SGSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIV 62

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 57.0 bits (138), Expect = 6e-11
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 310 GSTDAMGYFLGEVV--HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFG 367
           GS+ + G  + E V    Y   +  EL+   GD + + +  ++ W  GE  G  G  P  
Sbjct: 1   GSSGSSGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHK 60

Query: 368 YIE 370
           YI 
Sbjct: 61  YIT 63

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 20/49 (40%), Positives = 25/49 (51%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           V   Y  ++D EL L VGD + V      GW EG   GK G FP  +I+
Sbjct: 12  VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 60

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + ++ E++ EL    GD + +    +  W EG   G +G+FP  Y+E
Sbjct: 14  YDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVE 60

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           V+  Y  +++ EL L VGD + + +    GW  G    K G FP  +++
Sbjct: 12  VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 60

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIERRDR 374
            +  +    + EL L V D ++V     + W E      G  G FP  Y     +
Sbjct: 11  AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 65

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 56.6 bits (137), Expect = 9e-11
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            ++ +QA  D EL L  GD V++ +    GW  G   GK G FP  Y+E
Sbjct: 12  ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVE 60

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            ++ Y  + + EL+   G  + V K  ++GW EG   G  G FP  Y+E
Sbjct: 22  AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 70

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 373
           + YQ +S  ELT+  GD + +   TN  W + E  G+ G+ P  Y+++ D
Sbjct: 13  YDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKLD 62

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 13/47 (27%), Positives = 18/47 (38%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             Y   S  EL+   G  +++    +  W EG   G  G  P  YI 
Sbjct: 13  FDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGD--YVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           V+ PY+A++D ELT+  GD   ++ +   + GW EGE  G+ G FP  +++
Sbjct: 14  VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 372
           + ++  +  EL    GD + +  +++  W +G  KG+ G  P  Y+  +
Sbjct: 10  YTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + Y A++  ELT   GD ++V +    GW EGE  GK GW P  Y++
Sbjct: 10  YDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             +  +   EL    GD + +    +  W EG+   + G FP  Y+ 
Sbjct: 9   FDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 20/49 (40%), Positives = 25/49 (51%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           V   Y  ++D EL L VGD + V      GW EG   GK G FP  +I+
Sbjct: 23  VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 71

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + Y A ++ EL+ S G  + V    +  W +GE  G  G FP  Y++
Sbjct: 41  YDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 87

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 301 GIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECK 358
           G   S   N   ++       V++ Y A +  EL+L   + + V  V   ++ W  GE  
Sbjct: 1   GSSGSSGLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERG 60

Query: 359 GKAGWFPFGYIE 370
            + G  P  Y+E
Sbjct: 61  NQKGKVPITYLE 72

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + +  + D +L L  GD V + +  +  W +G C G+ G FP  Y++
Sbjct: 9   YQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 59.6 bits (143), Expect = 3e-10
 Identities = 27/123 (21%), Positives = 37/123 (30%), Gaps = 8/123 (6%)

Query: 248 VEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQT 307
           VE                    + E     A P   TP       P A            
Sbjct: 178 VEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAA--------ITP 229

Query: 308 HNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFG 367
              + +   +          A     L L VGD V V ++  NG  EGE  G+ G FPF 
Sbjct: 230 LPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFT 289

Query: 368 YIE 370
           +++
Sbjct: 290 HVK 292

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 1/88 (1%)

Query: 288 DTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKV 347
            T+  P        + +    N  T          ++ +      +L    G+ +V+ + 
Sbjct: 96  TTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEK 155

Query: 348 TNNGWAEGECK-GKAGWFPFGYIERRDR 374
               W     K G+ G  P  Y+E+  R
Sbjct: 156 PEEQWWSARNKDGRVGMIPVPYVEKLVR 183

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           V+  Y  +++ EL L VGD + + +    GW  G    K G FP  +++
Sbjct: 6   VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            ++ Y A+   EL+ +  D + + K   +GW  G  +GK G FP  Y+ 
Sbjct: 10  ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVT 58

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 18/68 (26%), Positives = 34/68 (50%)

Query: 304 ASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGW 363
           +   H+  +D  G  L   ++ YQ +S  E+T+  GD + +   TN  W + E   + G+
Sbjct: 4   SHHHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGF 63

Query: 364 FPFGYIER 371
            P  Y+++
Sbjct: 64  VPAAYVKK 71

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 55.2 bits (133), Expect = 4e-10
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGD--YVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            ++P++A +  E++ + GD   V  + V   GW  G  +G  GWFP  Y+E
Sbjct: 10  ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGD--YVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            + PY   ++ ELT   G+  +++ ++    GW +GE  GK G FP  +  
Sbjct: 11  TLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAV 61

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 54.7 bits (132), Expect = 5e-10
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 305 SQTHNGSTDAMGYFLGEVV---HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA 361
           S   +G+ D     LG      + YQA  D E++    D +   ++ ++GW  G CKG+ 
Sbjct: 2   SSGSSGTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRY 61

Query: 362 GWFPFGYIE 370
           G FP  Y+E
Sbjct: 62  GLFPANYVE 70

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 55.2 bits (133), Expect = 5e-10
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKV----TNNGWAEGECK--GKAGWFPFGYIERRDR 374
           V++PY  ++D EL L  GD++ +  +    T+ GW  G     G +G  P  YI + D 
Sbjct: 21  VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADE 79

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYV-VVRKVTN-NGWAEGECKGKAGWFPFGYIE 370
             + + A    EL+L  GD V +  ++    GW +GE  G+ GWFP  Y+E
Sbjct: 12  ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGD--YVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           V+ PY+A++D ELT+  GD   ++ +   + GW EGE  G+ G FP  +++
Sbjct: 7   VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
           + YQ +S  E+T+  GD + +   TN  W + E   + G+ P  Y+++
Sbjct: 12  YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 59

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 9/47 (19%), Positives = 27/47 (57%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + +  + + +L +  GD + + + +N  W +G+ + + G+FP  +++
Sbjct: 14  YKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQ 60

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 54.1 bits (131), Expect = 6e-10
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + ++  +  EL    GD + +  +++  W +G  KG+ G  P  Y+ 
Sbjct: 14  YTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 60

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 55.5 bits (133), Expect = 7e-10
 Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 17/103 (16%)

Query: 286 SVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVV--HPYQAESDVELTLSVGDYVV 343
           S   +P       VNG     T  G  D    F+ +V   H Y A    EL L  GD V+
Sbjct: 11  SSGLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVL 70

Query: 344 VRKVTNN-----GWAEG----------ECKGKAGWFPFGYIER 371
           V    N      GW  G          E +   G FP  + ER
Sbjct: 71  VIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTER 113

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 54.3 bits (131), Expect = 7e-10
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIE 370
           E+   + A+   E+TL   D V+V +   +GW  GE    G+ GWFP  +  
Sbjct: 21  EITKAFFAKQADEVTLQQADVVLVLQ-QEDGWLYGERLRDGETGWFPEDFAR 71

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 53.3 bits (128), Expect = 7e-10
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           V   Y AE + EL+L  G  V V +  ++GW  G   G+ GWFP  Y+ 
Sbjct: 6   VXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVL 54

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 324 HPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             Y       L     D + +  K   N W  G+  GK G FP  ++E
Sbjct: 17  KDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 53.3 bits (129), Expect = 8e-10
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             +  + D EL    GD++ V   ++  W +G C G+ G FP  Y+ 
Sbjct: 9   FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 55

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 55.1 bits (132), Expect = 8e-10
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 277 EAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTL 336
           +A P  P    +     P+        +  + +  +       G  ++ +Q     +L+L
Sbjct: 19  DAPPPIPKEPSNYDFSGPSSGIEGRGSSGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSL 78

Query: 337 SVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIERRD 373
            +GD V +++ T   W  G     K   G FP  +I  ++
Sbjct: 79  QIGDVVRIQE-TCGDWYRGYLIKHKMLQGIFPKSFIHIKE 117

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             ++   D EL     D + +    +     GE  G  GWFP  ++E
Sbjct: 14  LDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVE 60

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 324 HPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + ++A +D EL+   GD + V+ +  +  W + E  GK G+ P  YIE
Sbjct: 16  YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 63

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 315 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIER 371
           +G     V++ ++AE   ELT  VG+ + +    N  W   +     G  G  P G++  
Sbjct: 3   LGSLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSI 62

Query: 372 RD 373
            D
Sbjct: 63  ID 64

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           YQA  D E++    D +   ++ ++GW  G CKG+ G FP  Y+E
Sbjct: 18  YQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 62

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 310 GSTDAMGYFLGEV--VHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPF 366
           GS+ + G    +   ++  +AE D EL+ + G     V      GW EG   GK G  P 
Sbjct: 1   GSSGSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPE 60

Query: 367 GYIE 370
            Y+E
Sbjct: 61  NYVE 64

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN--NGWAEGECKGKAGWFPFG 367
           GS+ + G      +  Y  ++   L+   GD + +  V     GW  G   G++G FP  
Sbjct: 1   GSSGSSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPAD 60

Query: 368 YIE 370
            ++
Sbjct: 61  IVQ 63

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIER 371
            ++ Y+ +++ EL L  GD V V +  ++GW  G  +   K G FP  Y+  
Sbjct: 12  AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 15/86 (17%), Positives = 25/86 (29%)

Query: 285 PSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVV 344
            S        A    +   +S                      A    +L +  G  V+V
Sbjct: 217 QSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLV 276

Query: 345 RKVTNNGWAEGECKGKAGWFPFGYIE 370
            +  +NG  + E  G+ G  P  Y+ 
Sbjct: 277 TQKMSNGMYKAELDGQIGSVPHTYLR 302

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 9/124 (7%)

Query: 249 EAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTH 308
           E     H  +    +  E    +   +I        P++          E + + A +  
Sbjct: 87  EGNAVCHYLIE-RGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKP 145

Query: 309 NGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFG 367
                     +      +  E + +L    G+ + +   TN  W E     G  G  P  
Sbjct: 146 I-------IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPAN 198

Query: 368 YIER 371
           Y++ 
Sbjct: 199 YVQI 202

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 325 PYQAESDVELTLSVGD--YVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           PY+A++D ELT+  GD   ++ +   + GW EGE  G+ G FP  +++
Sbjct: 15  PYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 62

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 322 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIER 371
             + + A    EL+L  GD + ++ K    GW  GE  G+ GWFP  Y+E 
Sbjct: 10  ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEE 60

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYV-VVRKVTNN--GWAEGECKGKAGWFPF 366
           GS+ + G    + ++ Y+ ++D EL+   G  + ++ K   +  G+ EGE  G+ G FP 
Sbjct: 1   GSSGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPS 60

Query: 367 GYIE 370
             +E
Sbjct: 61  VLVE 64

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 328 AESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIER 371
            +    L L  GD V V   + + G+  GE  G  G  P   ++ 
Sbjct: 25  GQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDH 69

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGW--AEGECKGKAGWFPFGYIE 370
            ++ ++ E+D EL L+ GD V +      GW  AE E   K G  P  ++ 
Sbjct: 6   ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             +   ++ EL    GD + V   +N  W  G+   + GWFP  ++ 
Sbjct: 17  WDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVR 63

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + ++A  D ELT   G+ ++V   ++  W +GE     G FP  ++ 
Sbjct: 24  YDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVT 70

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + ++A  + EL    G+ V V   +N  W  G    K G FP  Y+ 
Sbjct: 8   YDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 60/393 (15%), Positives = 118/393 (30%), Gaps = 115/393 (29%)

Query: 13  EQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQ-RLERLYISTRAGKHFQRD--IVR 69
           E V    Q +  Q        SD+    +  +H  Q  L RL  S    K ++    ++ 
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS----KPYENCLLVLL 251

Query: 70  GV------EGY------IVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRA 117
            V        +      ++T ++  ++   LS  +  + S +  +   T  +        
Sbjct: 252 NVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEV------- 303

Query: 118 RAQMEKERGNLLKALGTQVAE---------PLRAMVLGAPLDDARHLAQRYDRMRQEAEA 168
                  +  LLK L  +  +         P R  ++   + D       +  +  +   
Sbjct: 304 -------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 169 QLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVK--LHDLKSNMAILGKEA- 225
             +I SSL                           L+ AE +     L    ++    A 
Sbjct: 357 T-IIESSLN-------------------------VLEPAEYRKMFDRL----SVFPPSAH 386

Query: 226 --AAAMA----AVESQQQRLTLQRLI--AMVE---AERTY--HQRVLQILDQLEGEMLSE 272
                ++     V      + + +L   ++VE    E T       L++  +LE E    
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 273 RQRIEAAPTAPTPSVDTMPPPPA--YEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAES 330
           R  ++      T   D + PP    Y      Y   +H      +G+      H    E 
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQY-----FY---SH------IGH------HLKNIEH 486

Query: 331 DVELTLSVGDYV----VVRKVTNNGWAEGECKG 359
              +TL    ++    + +K+ ++  A      
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 51.4 bits (124), Expect = 3e-09
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 320 GEVVHPYQAESDVELTLSVGDYV-VVRKVTNNGW--AEGECKGKAGWFPFGYIE 370
            +V++ Y  + D E+T++ GD + +V + T +GW     +  G+ G  P  YI 
Sbjct: 4   NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG--KAGWFPFGYIE 370
             +  ++ VE++   G+ + + +  +  W EG   G  + G FP  Y++
Sbjct: 13  FNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + ++A  D ELT   G+ + V   ++  W +GE     G FP  ++ 
Sbjct: 12  YDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGW--AEGECKGKAGWFPFGYIE 370
            ++ ++ E+D EL L+ GD V +      GW  AE E   K G  P  ++ 
Sbjct: 10  ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + ++A  D ELT   G+ + V   ++  W +GE     G FP  ++ 
Sbjct: 24  YDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVT 70

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 50.7 bits (122), Expect = 8e-09
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
           +  Y A  + +L+   G+ +++ + T   W  GE  G  G+ P  ++ +
Sbjct: 13  IADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGK 61

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 50.7 bits (122), Expect = 8e-09
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG--KAGWFPFGYIE 370
             +  ++ VE++   G+ + + +  +  W EG   G  + G FP  Y++
Sbjct: 14  FNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 50.8 bits (122), Expect = 9e-09
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             + A+ D  L  S  D + V +     W  GE  G  GWFP  Y++
Sbjct: 17  CSWTAKKDNHLNFSKHDIITVLE-QQENWWFGEVHGGRGWFPKSYVK 62

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 55.4 bits (132), Expect = 1e-08
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            +  +   S +EL    GD + +    N  W EG  +G  G FP  +++
Sbjct: 179 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 227

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 322 VVHPYQAESDV-ELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIE 370
             + +       EL L  GD + + +   +GW+ G+     K GW P  Y++
Sbjct: 5   AAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 322 VVHPYQA-ESDVELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
            + P+ A  +   L+ + GD + ++     +GW  GE       GWFP  Y +
Sbjct: 11  TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 328 AESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
           A    E+T+  GD + +   TN  W + E   + G+ P  Y+++
Sbjct: 2   AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 45

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
            PY A    E+T+  GD + +   TN  W + E   + G+ P  Y+++
Sbjct: 7   PPYSAGGR-EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 53

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAG-WFPFGYIE 370
            +  Y+A+ + ELT      +   +    GW  G+  GK   WFP  Y+E
Sbjct: 11  ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVE 60

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 324 HPYQAESDVELTLSVGDYV-VVRKVT--NNGWAEGECKGKAGWFPFGYIE 370
           +   AES  EL+   GD + V+ + T   +GW      G+ G  P   ++
Sbjct: 10  YDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLK 59

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGW----AEGECKGKAGWFPFGYIERRDRVLA 377
            +  Y+ + +       G  + V +   NGW         K   GW P  Y+E+++   +
Sbjct: 15  SIADYEGDEE-TAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSGPS 73

Query: 378 S 378
           S
Sbjct: 74  S 74

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 322 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIERRD 373
            ++ + A  D  L+++ G+ + V+    N  W E + K   GW P  YI   +
Sbjct: 10  ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 328 AESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            + + ELT   GD + V  ++  +G+  GE  G+ G  P  ++E
Sbjct: 25  VDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLE 68

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIER 371
            +H Y A    EL L  G+ + V     +GW +G     G+ G FP  Y+  
Sbjct: 12  ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 322 VVHPYQAESDV-ELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
            + P+ A ++   L+ + GD + ++     +GW  GE       GWFP  Y +
Sbjct: 12  TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 322 VVHPYQAE-SDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
             + +    S  EL L  GD V + +   +GW+  +     K GW P  Y+ 
Sbjct: 7   AAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMT 58

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 333 ELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMAEV 383
           E+T+  GD + +   TN  W + E   + G+ P  Y+++ D     ++   
Sbjct: 5   EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLA 55

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTN--NGWAEGECKGKAGWFPFGYIE 370
           + ++ +   +L    GD + V   T+    W EG+ +G+ G FP  Y+ 
Sbjct: 24  YSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVT 72

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 324 HPYQAESDVELTLSVGDYV-VVRKVT--NNGWAEGECKGKAGWFPFGYIE 370
           +    +   EL  S GD + ++ +    + GW +    G+ G  P   ++
Sbjct: 14  YDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQ 63

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           GS+ + G      ++PY +    +LT + G+ ++V +  +  W  G    ++G FP  Y+
Sbjct: 1   GSSGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQ-KDGEWWTGSIGDRSGIFPSNYV 59

Query: 370 ERRD 373
           + +D
Sbjct: 60  KPKD 63

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
           ++ + +VEL+   G+++ + +  N  W EG     G+ G FP  Y++
Sbjct: 26  FKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG---KAGWFPFGYIE 370
            ++  QA++D ELT   G+ ++V    +  W  G  +G   + G FP  ++ 
Sbjct: 15  TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVH 66

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 49.9 bits (119), Expect = 5e-08
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 315 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIER 371
           M       ++ ++AE D EL +S G+ + +    +  W   +     G  G  P  Y+  
Sbjct: 1   MAPLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRI 60

Query: 372 RD 373
            D
Sbjct: 61  ID 62

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 48.0 bits (115), Expect = 6e-08
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAG-WFPFGYIE 370
            +  Y+A+ + ELT +    +   +  + GW  G+  GK   WFP  Y+E
Sbjct: 8   ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 57

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 322 VVHPYQAESDVELTLSVGDYV-VVRKV---TNNGWAEGECKGKAGWFPFGYIERRDRVLA 377
            V+ ++A +  EL++S    + ++       N  W   E  GK G+ P  YI + +   +
Sbjct: 18  AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPS 77

Query: 378 S 378
           S
Sbjct: 78  S 78

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           GS+ + G +  ++++ + A +  EL++   + + V +     W      G+AG+ P   +
Sbjct: 1   GSSGSSGKY-VKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNIL 59

Query: 370 ER 371
             
Sbjct: 60  GE 61

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA-GWFPFGYIE 370
           + Y+A+   ELT   G  +        GW +G+   +   +FP  Y+E
Sbjct: 14  YDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVE 61

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 47.9 bits (115), Expect = 7e-08
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTN--NGWAEGECKGKAGWFPFGYIE 370
           + +  E   +L    GD + + K ++  N W  G   G+ G FP  Y+E
Sbjct: 10  YSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 47.6 bits (114), Expect = 9e-08
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 326 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
           Y A  D ELT    D ++  +  ++ W  GE +  G  G FP  Y+ 
Sbjct: 9   YDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 47.5 bits (114), Expect = 9e-08
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 320 GEVV---HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIER 371
            E V     +    + +L    GD + +R      W   E  +GK G  P  Y+E+
Sbjct: 1   AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 323 VHPYQA-ESDVELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
           +  + A ++   L+   GD + ++     +GW  GE +     GWFPF Y  
Sbjct: 13  IFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTR 64

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 48.1 bits (114), Expect = 2e-07
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 17/75 (22%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVT---------------NNGWAEG--ECKGKAGWF 364
            ++P++ E   +L L  GD +VV +                 + GW  G  E   + G F
Sbjct: 16  ALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDF 75

Query: 365 PFGYIERRDRVLASK 379
           P  Y+E    V  ++
Sbjct: 76  PGTYVEFLGPVALAR 90

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 325 PYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
            Y A+ + E++   GDY+V  +  ++GW  G  +  G+ G  P  YIE
Sbjct: 14  DYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 29/112 (25%), Positives = 38/112 (33%), Gaps = 17/112 (15%)

Query: 277 EAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMG--YFLGEVVHPYQAESDVEL 334
            AA  A + S+  +        VNG     +  G  D      F  +  H Y A    EL
Sbjct: 100 TAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDEL 159

Query: 335 TLSVGDYVVVRKVTN-----NGWAEG----------ECKGKAGWFPFGYIER 371
            L  GD V+V    N      GW  G          + +   G FP  + ER
Sbjct: 160 QLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTER 211

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           GS+ + G    +V++ ++A +  ELT+  G+ + V   +   W      G++G+ P   +
Sbjct: 1   GSSGSSGL-KMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNIL 59

Query: 370 ERRD 373
           E   
Sbjct: 60  EPLS 63

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEG-ECKGKAGWFPFGYIE 370
            V  + A+   +LT   G+ ++V +   +GW    + KG  G  P  Y+E
Sbjct: 15  AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE 64

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIE 370
           + Y A    ELT+  GD + V    N  W  G   KG+ G+FP  ++ 
Sbjct: 13  YDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVA 60

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 326 YQAESDVELTLSVGDY-VVVRKVTNNGWAEGECK-GKAGWFPFGYIE 370
           Y  +   EL+   GD    + +    GW  G    G+ G +P  Y+E
Sbjct: 12  YDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 318 FLGEVVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIER 371
           +    + P    ++ EL    G  + V      +G+  GE   + G  P   +  
Sbjct: 26  YDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSE 80

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 320 GEVV---HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRD 373
            E V     +    + +L    GD + +R      W   E  +GK G  P  Y+E+  
Sbjct: 3   AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYH 60

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 325 PYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG-----KAGWFPFGYIE 370
           PY+++ + +L       ++V  V +  W  GE +        G FP  ++ 
Sbjct: 15  PYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 45.4 bits (108), Expect = 8e-07
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 322 VVHPYQAESDV-ELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
            + PY    D  E++   GD  +V     +GW         + G      +E
Sbjct: 12  AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 63

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 45.4 bits (108), Expect = 9e-07
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGW--AEGECKGKAGWFPFGYIERRDRVLASKMA 381
           + Y+A ++ +L+   G+   +   +   W  A     G+ G+ P  Y+   DR+      
Sbjct: 12  YDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLDYKDDD 71

Query: 382 E 382
           +
Sbjct: 72  D 72

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 305 SQTHNGSTDAMGYFLGEVVHPYQAESDV-ELTLSVGDYVVVRKVTNNGWAEGECKG---- 359
              H+      G      +  +    D   L +  GD + V +   +G  +G        
Sbjct: 6   HHHHSSGLVPRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRG 65

Query: 360 --KAGWFPFGYIE 370
             + G+FP G +E
Sbjct: 66  TDRIGYFPPGIVE 78

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 3/56 (5%)

Query: 323 VHPYQAESDVELTLSVGD-YVVVRKVTNNGW--AEGECKGKAGWFPFGYIERRDRV 375
              +      EL    GD   ++    N  W   +    G+ G    G +  R   
Sbjct: 23  KCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSGP 78

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGE-CKGKAGWFPFGYIE 370
           VV+ Y+A    ELT+   + + V+       W +     G+ G+ P  Y++
Sbjct: 18  VVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQ 68

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 321 EVV--HPYQAESDVELTLSVGD-YVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
           E +  + ++A +D EL+   GD   V+ +  +  W + E  GK G+ P  YIE 
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 55

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 46.6 bits (110), Expect = 4e-06
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR 374
             +  + D EL    GD++ V   ++  W +G C G+ G FP  Y+   +R
Sbjct: 165 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 215

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 27/99 (27%)

Query: 278 AAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLS 337
                      +M   PA      ++                      Y+A  D ELTL 
Sbjct: 11  VDLGTENLYFQSMGTTPAGPVWTAVF---------------------DYEAAGDEELTLR 49

Query: 338 VGDYVVV-----RKVTNNGWAEGECK-GKAGWFPFGYIE 370
            GD V V         + GW  G+   G+ G FP  Y+ 
Sbjct: 50  RGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 2/137 (1%)

Query: 243 RLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGI 302
            + +                      +    Q  ++ P                 E    
Sbjct: 63  IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 122

Query: 303 YASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKA 361
               +          ++   +  +    + +L    GD + +R      W   E  +GK 
Sbjct: 123 SRQGSGVILRQEEAEYV-RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 181

Query: 362 GWFPFGYIERRDRVLAS 378
           G  P  Y+E+     AS
Sbjct: 182 GMIPVPYVEKYRPASAS 198

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 321 EVVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGE-CKGKAGWFPFGYIER 371
                     + EL L+ G Y+ V   +  +G+ EGE   G+ G  P  +++ 
Sbjct: 27  NPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDF 79

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 322 VVHPYQAE-SDVELTLSVGDYV-VVRKVTNNGWAEGE-CKGKAGWFPFGYIE 370
           V++ + AE  + ELT++ G+ + V       GW EG+  KG+ G  P  Y+E
Sbjct: 14  VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVE 65

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIERRD 373
           G  ++ +Q     +L+L +GD V +++ T   W  G     K   G FP  +I  ++
Sbjct: 20  GVAIYNFQGSGAPQLSLQIGDVVRIQE-TCGDWYRGYLIKHKMLQGIFPKSFIHIKE 75

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 23/95 (24%)

Query: 280 PTAPTPSVDTMPPPPAYEE-VNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSV 338
           P  PTP  +        E  V  +Y                      YQ     EL L  
Sbjct: 3   PLPPTPEDNRRSFQEPEETLVIALY---------------------DYQTNDPQELALRC 41

Query: 339 GDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIERR 372
            +   +   +   W   + K G  G+ P  Y+  +
Sbjct: 42  DEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEK 76

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 294 PAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWA 353
             + + +  + S                 ++ +Q  +  E+ +  GD + V     +G++
Sbjct: 419 TLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYS 478

Query: 354 EGECK--GKAGWFPFGYIERR 372
           +G  +  G+ G +P   +  +
Sbjct: 479 KGVNRKLGRTGLYPSYKVREK 499

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 19/81 (23%), Positives = 24/81 (29%)

Query: 294 PAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWA 353
             Y    G       N           E +  +    D EL    GD + V   TN  W 
Sbjct: 7   HHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWW 66

Query: 354 EGECKGKAGWFPFGYIERRDR 374
            G      GWFP  ++  R  
Sbjct: 67  WGRVADGEGWFPASFVRLRVN 87

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 322 VVHPYQAESDV-ELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
            + PY    D  E++   GD  +V     +GW         + G      +E
Sbjct: 10  AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGW--AEGECKGKAGWFPFGYIERRD 373
           + Y+A ++ +L+   G+   +   +   W  A     G+ G+ P  Y+   D
Sbjct: 22  YDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 301 GIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGD--YVVVRKVTNN--GWAEGE 356
           G   S   N ++    + +    + + A SD E++   GD   + +++      GW    
Sbjct: 1   GSSGSSGTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLAS 60

Query: 357 CKGKA-GWFPFGYIE 370
             G+  G  P  Y++
Sbjct: 61  LDGQTTGLIPANYVK 75

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 43.5 bits (102), Expect = 5e-06
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 17/70 (24%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVT---------------NNGWAEG--ECKGKAGWFP 365
           ++ Y+ E + ++ L +GD + V K +                 GW  G  E  G+ G FP
Sbjct: 11  LYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFP 70

Query: 366 FGYIERRDRV 375
             Y+E   R 
Sbjct: 71  GTYVEYIGRK 80

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 42.6 bits (101), Expect = 7e-06
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 324 HPYQAESDVELTLSVGD-YVVVRKVTNNGWAEGECK-GKAGWFPFGYIERRDRV 375
           + +   ++ +L    GD   +V    +  W + + K G+ G  P  Y+++R+ V
Sbjct: 18  YNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGV 71

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 322 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
           V + + AES  ELT+  GD V ++    +  W   +    GK+G  P  +IE
Sbjct: 7   VQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 8/51 (15%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGE-CKGKAGWFPFGYIE 370
            ++ ++  S+  ++++ G+ + ++ +   +GW      +G  G+ P  Y+ 
Sbjct: 12  AIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLR 62

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGW--AEGECKGKAGWFPFGYIERRDRV 375
           + Y A    +L+   G+   + +     W  A     G+ G+ P  Y+   D +
Sbjct: 13  YDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI 66

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 280 PTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVG 339
           P  P P  +++      + +                   +      Y A+ D EL +   
Sbjct: 7   PPVPNPDYNSLKKGSLVKNL-------------HMTEEVIVIAKWDYTAQQDQELDIKKN 53

Query: 340 DYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 372
           + + +   +   W       + G+ P  Y+ER+
Sbjct: 54  ERLWLLDDSKTWWRVRNAANRTGYVPSNYVERK 86

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGW--------AEGECKGKAGWFPFGYIERRD 373
           ++ YQ +S  E+T+  GD + +   TN  W          G+   + G+ P  Y+++ D
Sbjct: 7   LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD 65

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGW-----AEGECKGKAGWFPFGYIERRD 373
           +  +++ +D EL+   GD   V +     W      E       G+ P  Y+  R+
Sbjct: 16  LWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE 71

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 324 HPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGE-CKGKAGWFPFGYIERRDR 374
           +P+ + ++ EL    G+ + V  +   +  W + +  +G+ G  P  Y+     
Sbjct: 13  YPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 66

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 44.8 bits (104), Expect = 4e-05
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 9/112 (8%)

Query: 268 EMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYF-------LG 320
             +SE+   +A   +      + P   + +E N  ++S   NG ++              
Sbjct: 372 STVSEKDDTKAKNVSSYEKTQSYPTDWSDDESNNPFSSTDANGDSNPFDDDATSGTEVRV 431

Query: 321 EVVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECK-GKAGWFPFGYIE 370
             ++ Y+ +   EL+   GD +  +      GW +G    G+ G +P  Y+E
Sbjct: 432 RALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVE 483

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 9/59 (15%)

Query: 321 EVVHPYQA------ESDVELTLSVGDYV-VVRKVTNNGWAEGE--CKGKAGWFPFGYIE 370
           EV   Y             L L+ GD V + +    + W EG      + GWFP   + 
Sbjct: 8   EVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 11/61 (18%), Positives = 24/61 (39%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           G   +         + +QA +  EL++   D + V   +   W   +  G+ G+ P+  +
Sbjct: 1   GPLGSGALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYNIL 60

Query: 370 E 370
            
Sbjct: 61  T 61

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 324 HPYQAESDVELTLSVGD-YVVVRKVTNNGW-AEGECKGKAGWFPFGYIERRDRV 375
           + Y+A +  +L+   G+ + ++     + W A     GK+G+ P  Y+   D +
Sbjct: 34  YDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSI 87

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 19/97 (19%)

Query: 278 AAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLS 337
            +P   + + +T     A  E   + A                  ++ Y+A    +L+  
Sbjct: 4   GSPGPNSHNSNTPGIREAGSEDIIVVA------------------LYDYEAIHHEDLSFQ 45

Query: 338 VGDYVVVRKVTNNGW-AEGECKGKAGWFPFGYIERRD 373
            GD +VV + +   W A      K G+ P  Y+ R D
Sbjct: 46  KGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 82

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 24/94 (25%)

Query: 281 TAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGD 340
           ++ +  +           V  +Y                     P+ + ++ EL    G+
Sbjct: 2   SSGSSGLSNGQGSRVLHVVQTLY---------------------PFSSVTEEELNFEKGE 40

Query: 341 YVVV--RKVTNNGWAEGE-CKGKAGWFPFGYIER 371
            + V  +   +  W + +  +G+ G  P  Y+  
Sbjct: 41  TMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV 74

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIER 371
           + Y   +  +L L  GD   + + +N  W     K G+ G+ P  Y+  
Sbjct: 15  YDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 324 HPYQAESD--VELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           +PY A+ D   E++    + + V  +    W      G+ G  P  Y++
Sbjct: 12  YPYDADDDDAYEISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYVQ 60

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGW---------AEGECKGKAGWFPFGYIER 371
           +  YQA +  +L+   GD + V   ++ GW           G  +   G+ P  Y+  
Sbjct: 13  LFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAE 70

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 322 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
           V + + AES  ELT+  GD V ++    +  W   +    GK+G  P  +IE
Sbjct: 11  VQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 41.7 bits (97), Expect = 9e-05
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 283 PTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYV 342
              S   +P    + ++  +    +   +       +      +  E + +L    G+ +
Sbjct: 85  ANQSFPDIPALLNHFKMRVLT-EASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERL 143

Query: 343 VVRKVTNNGWAEGE-CKGKAGWFPFGYIE 370
            +   TN  W E     G  G  P  Y++
Sbjct: 144 EILSKTNQDWWEARNALGTTGLVPANYVQ 172

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A Length = 256

 Score = 42.5 bits (99), Expect = 9e-05
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 37/196 (18%)

Query: 88  LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGA 147
           L+E   K+G +           A    G A  ++ + + +L   +     +PL+ +    
Sbjct: 93  LAEAMLKFGRE--LGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNL-HDK 149

Query: 148 PLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAA 207
            L + +H  ++ +  R +                        K R+              
Sbjct: 150 DLREIQHHLKKLEGRRLDFGY--------------------KKKRQGK----------IP 179

Query: 208 EVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 267
           + +L           + A ++M  +        + +L A+V+A+  YH++ +QIL Q+  
Sbjct: 180 DEELRQALEKFDESKEIAESSMFNLLEMDIEQ-VSQLSALVQAQLEYHKQAVQILQQVTV 238

Query: 268 EMLSERQRIEAAPTAP 283
            +    +RI  A + P
Sbjct: 239 RL---EERIRQASSQP 251

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIERRD 373
           + +QA    +L L  G   ++ +  +  W     K G  G+ P  Y+  + 
Sbjct: 9   YDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 325 PYQAESDVELTLSVGDYV-VVRKVTNNGWAEG--ECKGKAGWFPFGYIE 370
           P        L L+ GD V + +    + W EG      + GWFP   + 
Sbjct: 26  PPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 74

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGW-AEGECKGKAGWFPFGYIERRDRV 375
           V+  Y +          G+ + V       W A     G+  + P   + R    
Sbjct: 22  VLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVSGP 76

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} Length = 240

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 28/185 (15%), Positives = 62/185 (33%), Gaps = 35/185 (18%)

Query: 99  NTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR 158
                 +T   A +  G +   M + + +L   +     +PL+ +     L +  H  ++
Sbjct: 86  KELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLL-QDKDLKEIGHHLKK 144

Query: 159 YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM 218
            +  R + + +                KR  K                 + ++       
Sbjct: 145 LEGRRLDYDYKK---------------KRVGK---------------IPDEEVRQAVEKF 174

Query: 219 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEA 278
               + A  +M           + +L   +EA   YH++  +IL +L+ ++   + RI A
Sbjct: 175 EESKELAERSMFNFLENDVEQ-VSQLAVFIEAALDYHRQSTEILQELQSKL---QMRISA 230

Query: 279 APTAP 283
           A + P
Sbjct: 231 ASSVP 235

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 324 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIER 371
           + YQ     EL L   +   +   +   W   + + G  G+ P  Y+  
Sbjct: 26  YDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVE 74

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 322 VVHPYQAES-DVELTLSVGDYVVV-----RKVTNNGWAEGECK-GKAGWFPFGYIE 370
            ++ +  E+ ++E+ L  GD + +         ++ W +   K G  G+ P+ YIE
Sbjct: 12  ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 67

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 8/49 (16%), Positives = 19/49 (38%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
             + + A +  EL++   D + +       W      G +G+ P   ++
Sbjct: 6   SKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILD 54

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 365
           ++ Y A++D EL  S G  + V    +  W +GE  G+ G FP
Sbjct: 8   MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFP 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	99.94
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	99.93
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.67
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	99.66
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.65
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.64
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.62
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.62
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.62
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.61
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.6
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.6
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.6
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.6
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.6
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.59
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.59
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.59
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.59
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.59
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.59
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.59
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.59
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.59
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.58
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.58
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	99.58
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.58
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.58
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.58
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.58
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.58
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.58
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.58
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.58
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.57
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.57
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.57
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.57
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.57
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.57
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.57
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.57
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.57
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.56
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.56
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.56
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.56
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.56
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.56
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.56
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.56
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.56
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.56
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.56
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.56
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.56
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.56
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.56
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.55
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.55
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.55
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.55
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.55
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	99.55
3u23_A	65	CD2-associated protein; structural genomics, struc	99.55
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.55
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.55
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.55
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.55
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.55
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.55
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.55
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.55
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.55
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.54
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.54
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.54
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.54
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.54
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.54
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.54
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.54
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.54
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.54
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.53
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.53
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.53
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.53
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.53
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.53
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.53
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.53
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.53
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.53
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.53
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.53
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.53
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.53
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.52
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.52
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.52
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.52
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.52
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.52
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.52
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.52
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.52
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.52
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.52
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.52
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.51
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.51
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.51
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.51
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.51
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.51
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.51
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.51
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.51
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.51
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.51
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.51
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.51
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.51
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.51
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.51
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.51
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.5
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.5
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.5
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.5
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.5
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.5
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.5
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.5
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.49
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.49
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.49
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.49
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.49
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.49
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.49
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.49
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.49
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.49
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.49
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.48
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.48
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.48
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.47
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.47
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.47
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.47
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.46
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.46
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.46
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.46
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.45
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.45
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.45
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.45
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	99.45
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.45
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.44
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.43
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.42
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.41
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.41
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.4
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.39
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.39
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.39
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.34
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.32
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.31
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.3
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.3
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.29
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.29
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.27
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.27
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.26
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.26
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.26
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.24
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.24
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.21
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.16
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.76
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.14
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.13
4avm_A	237	Bridging integrator 2; protein binding, plasma mem	99.13
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.1
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.07
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.07
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.07
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.05
2ykt_A	253	Brain-specific angiogenesis inhibitor 1-associate	99.05
4a3a_A	243	Amphiphysin; structural genomics, invagination, kn	99.04
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	99.02
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.59
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.02
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.01
3ok8_A	222	Brain-specific angiogenesis inhibitor 1-associate	98.98
1u3o_A	82	Huntingtin-associated protein-interacting protein;	98.96
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.92
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	98.84
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.79
2d1l_A	253	Metastasis suppressor protein 1; IRSP53, actin bin	98.79
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.77
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.74
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	98.67
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.53
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.51
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.45
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.44
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	98.44
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.42
1i4d_A	224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	98.4
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.32
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.28
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.19
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.12
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	98.12
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	97.91
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.9
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	96.92
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	96.9
4akv_A	386	Sorting nexin-33; transport protein, organelle bio	96.71
2v0o_A	276	FCHO2, FCH domain only protein 2; lipid-binding pr	96.56
3dyt_A	366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	96.38
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	96.27
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	95.99
3g9g_A	287	Suppressor of yeast profilin deletion; SYP1, BAR d	95.81
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	95.74
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	95.68
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	95.67
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	94.47
3m3w_A	320	Pacsin3, protein kinase C and casein kinase II sub	93.77
2kt8_A	76	Probable surface protein; SH3 family, structural g	93.58
2ke4_A	98	CDC42-interacting protein 4; CIP4, TC10, coiled-co	92.81
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	92.52
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	89.03
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	88.26
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	85.98
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	83.45
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	82.2

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}

Probab=99.94  E-value=1.3e-25  Score=211.78  Aligned_cols=205  Identities=21%  Similarity=0.317  Sum_probs=157.5

Q ss_pred             cCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCC------------------------Cccc
Q 016699           27 GGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG------------------------SKQV   82 (384)
Q Consensus        27 ~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~------------------------~~~~   82 (384)
                      ||+++|+.|.+-.++       .|..|=.+.+.++.|..+|.+.+..|++|+                        ++++
T Consensus         1 ~~Ek~G~~ekTel~~-------d~~~lE~r~d~~~~~~~~l~k~~~~yl~pn~~~r~~~~~~~~i~k~~~~~k~~~~~~~   73 (240)
T 2z0v_A            1 GSSGSSGAEGTKLDD-------EFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQT   73 (240)
T ss_dssp             -------------CH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHTCCCCCCSSCCCCCCSSCCH
T ss_pred             CCCCCCCCccCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHhccccCCCCCCc
Confidence            677888777543222       344555677888889999999998887652                        3344


Q ss_pred             chhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHH
Q 016699           83 EIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDR  161 (384)
Q Consensus        83 e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~  161 (384)
                      +.  .||++|.++|.++|  ++++||.||.+||+++++|+..+.+|+..+..+|++||++|++. |+++|. +|++    
T Consensus        74 ~~--~L~~~m~~~~~~l~--~ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~-d~k~i~~~rKk----  144 (240)
T 2z0v_A           74 EG--LLGDCMLKYGKELG--EDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDK-DLKEIGHHLKK----  144 (240)
T ss_dssp             HH--HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT-HHHHHHHHHHH----
T ss_pred             HH--HHHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----
Confidence            43  79999999999999  99999999999999999999999999999999999999999999 999999 7777    


Q ss_pred             HHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHH
Q 016699          162 MRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV-----ESQQ  236 (384)
Q Consensus       162 ~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~v-----e~qq  236 (384)
                          ++.           +|||+-..+.|.+.     ..+.+++.|+.+|+++.+.       +...|..+     +.  
T Consensus       145 ----le~-----------~rLd~D~ak~k~~k-----~~eeEl~~A~~~fe~~~e~-------~~~~m~~~~~~~~e~--  195 (240)
T 2z0v_A          145 ----LEG-----------RRLDYDYKKKRVGK-----IPDEEVRQAVEKFEESKEL-------AERSMFNFLENDVEQ--  195 (240)
T ss_dssp             ----HHH-----------HHHHHHHHHTTTTS-----SCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHSTHHH--
T ss_pred             ----HHH-----------HHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHH-------HHHHHHHHHhCcHHH--
Confidence                999           99987322222211     1356999999999999988       45555533     44  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 016699          237 QRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAP  283 (384)
Q Consensus       237 q~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~e~qr~~s~s~~p  283 (384)
                          +.+|.+||+||+.||++|.++|.++...|..   ++..++++|
T Consensus       196 ----l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~---~~~~~~~~p  235 (240)
T 2z0v_A          196 ----VSQLAVFIEAALDYHRQSTEILQELQSKLQM---RISAASSVP  235 (240)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTSSC
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCC
Confidence                8999999999999999999999999999987   566666655

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A

Probab=99.93  E-value=2.7e-25  Score=211.48  Aligned_cols=222  Identities=21%  Similarity=0.294  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccC------------
Q 016699           10 KLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVT------------   77 (384)
Q Consensus        10 ~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~------------   77 (384)
                      -|+.+|.|..|.|-.++|+..     .+-.|+       .+..|=.+.+.+|.|.++|.+.+..|+++            
T Consensus         5 g~kK~~~ra~q~~~ek~G~~E-----~Tel~~-------d~~~lE~r~d~~k~~~~kl~k~~~~yl~~np~~r~~~~~~~   72 (256)
T 1zww_A            5 GLKKQFHKATQKVSEKVGGAE-----GTKLDD-------DFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMIN   72 (256)
T ss_dssp             ---------------------------CCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTTC-------
T ss_pred             hHHHHHHHHHHHHHhHhcccc-----ccCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHH
Confidence            367889999888888888443     221122       22333344566666777777777766654            


Q ss_pred             ------------CCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc
Q 016699           78 ------------GSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (384)
Q Consensus        78 ------------~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~  145 (384)
                                  ++|+.+.  .||++|..+|.++|  ++++||.||.+||+++++|+..+..|+..+..+||+||++|++
T Consensus        73 ~i~k~~g~~k~~~~p~~~~--~L~~~m~~~~~~l~--~~s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~  148 (256)
T 1zww_A           73 TMSKIRGQEKGPGYPQAEA--LLAEAMLKFGRELG--DDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHD  148 (256)
T ss_dssp             --------------CCHHH--HHHHHHHHHHHHHC--SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHhhcccccCCCCCcHH--HHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        2344433  79999999999999  9999999999999999999999999999999999999999999


Q ss_pred             CCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHH
Q 016699          146 GAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKE  224 (384)
Q Consensus       146 ~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e  224 (384)
                      + |+++|+ +++|        ++.           +|||+-..+.|.+..     .+.+++.|+.+|+++.+.       
T Consensus       149 ~-~~k~i~k~rkk--------l~~-----------~rLdyD~~k~k~~k~-----~eeEle~A~~~fe~~~e~-------  196 (256)
T 1zww_A          149 K-DLREIQHHLKK--------LEG-----------RRLDFGYKKKRQGKI-----PDEELRQALEKFDESKEI-------  196 (256)
T ss_dssp             T-HHHHHHHHHHH--------HHH-----------HHHHHHHHHHTTTTS-----CHHHHHHHHHHHHHHHHH-------
T ss_pred             H-HHHHHHHHHHH--------HHH-----------HHHHHHHHHHHhccc-----cHHHHHHHHHHHHHHHHH-------
Confidence            9 999999 7777        999           999883322222111     356999999999999988       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 016699          225 AAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAP  283 (384)
Q Consensus       225 ~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~e~qr~~s~s~~p  283 (384)
                      +...|..+-.. ..-++.+|.+|+++|++||.+|+++|.++...|..   ++..++++|
T Consensus       197 ~~~~m~~l~~~-e~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~---~~~~~~~~p  251 (256)
T 1zww_A          197 AESSMFNLLEM-DIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEE---RIRQASSQP  251 (256)
T ss_dssp             HHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHC-----
T ss_pred             HHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcCC
Confidence            55555533110 01118999999999999999999999999999987   566666655

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.67  E-value=4.6e-17  Score=121.45  Aligned_cols=55  Identities=29%  Similarity=0.667  Sum_probs=51.5

Q ss_pred             ceeEeeccCCCCCCCC-cccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVE-LTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~E-Lsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l  372 (384)
                      .+|+|+|||++++++| |+|.+||+|.|++..++|||.|++ +|+.||||+|||+.+
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            4799999999999887 999999999999999999999998 799999999999875

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=99.66  E-value=5.1e-15  Score=139.51  Aligned_cols=218  Identities=12%  Similarity=0.178  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHH
Q 016699            9 TKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKL   88 (384)
Q Consensus         9 ~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l   88 (384)
                      .-|+.++.|.+|.|..++|++.     .++ |+.       ||.+....+....+.++|.+.++.|++.-.........|
T Consensus        26 ~~~~K~~~Ra~q~~~~k~G~~e-----~T~-D~~-------Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l   92 (251)
T 2fic_A           26 SNVQKKLTRAQEKVLQKLGKAD-----ETK-DEQ-------FEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKL   92 (251)
T ss_dssp             --------------------------------CH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHcCCcc-----ccC-CHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457899999999999998443     332 331       223333334444466667777776666544444444579


Q ss_pred             HHHHHH-hhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHH
Q 016699           89 SEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEA  166 (384)
Q Consensus        89 ~~~m~~-~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~el  166 (384)
                      |++|.. |+.+.+      .+.++..+|++..   ....+|...+..+|++||..++.  .+++++ .++|        .
T Consensus        93 ~~~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~d~~~~l~~~vi~Pl~~~~~--~~~~i~~~ikK--------R  153 (251)
T 2fic_A           93 NECLQEVYEPDWP------GRDEANKIAENND---LLWMDYHQKLVDQALLTMDTYLG--QFPDIKSRIAK--------R  153 (251)
T ss_dssp             HHHHHHHCCTTST------THHHHHHHHHHHH---HHHHHHHHHHHHHTHHHHHHHHH--THHHHHHHHHH--------H
T ss_pred             HHHHHHHhCCCcC------CchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHH--------H
Confidence            999987 443333      4677777776654   55667777888999999999995  699999 5555        6


Q ss_pred             HHhhhhhccCCcccHHHH---HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016699          167 EAQLVISSSLKPSQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR  243 (384)
Q Consensus       167 e~~~~~~~~l~~~rrld~---kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~  243 (384)
                      +.           ++|||   +.+..|.++.+.  ..+.++..|+.+++++++.+..++......|+.+......+...+
T Consensus       154 ~~-----------k~lDyD~~~~~l~kl~~k~~--kd~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~  220 (251)
T 2fic_A          154 GR-----------KLVDYDSARHHYESLQTAKK--KDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNT  220 (251)
T ss_dssp             HH-----------HHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-----------HHhhHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66           66666   223333332211  134588899999999999999999999999988877666677789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          244 LIAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       244 L~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      |.+|+.+|+.||.++..++.+|...|..
T Consensus       221 l~~f~~~Q~~f~~~~~~~~~~L~~~l~~  248 (251)
T 2fic_A          221 FQSIAGLEENFHKEMSKLNQNLNDVLVG  248 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998853

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.65  E-value=3.7e-16  Score=118.38  Aligned_cols=57  Identities=30%  Similarity=0.476  Sum_probs=53.2

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeec
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  372 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l  372 (384)
                      ....++|+|||.+.+++||+|.+||+|.|++..++|||.|++  +|+.||||+|||+++
T Consensus         5 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            5 DLFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             SSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             cCEEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            345799999999999999999999999999999999999998  799999999999976

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.64  E-value=4.8e-16  Score=120.05  Aligned_cols=63  Identities=21%  Similarity=0.154  Sum_probs=57.6

Q ss_pred             CcceeEeeccCCCC--CCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCch
Q 016699          316 GYFLGEVVHPYQAE--SDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       316 ~~~~a~alydy~a~--~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      ....|+|+|||.+.  +++||+|.+||+|.|+...++|||.|+++|+.||||+|||+.+...|.+
T Consensus         8 ~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~s   72 (73)
T 2ebp_A            8 FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPSS   72 (73)
T ss_dssp             CSEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEECCCCSCC
T ss_pred             cceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEECCCCCCC
Confidence            34679999999976  9999999999999999999999999999999999999999999877654

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.62  E-value=1.1e-15  Score=120.05  Aligned_cols=63  Identities=25%  Similarity=0.378  Sum_probs=57.8

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEee--cCCCeeEEEeCCeeeEecCCCeeeccCCCch
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGECKGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~--~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      ....|+|+|||++.+++||+|.+||+|.|+..  .++|||.|+++|+.||||++||+.+...|.+
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~s   80 (81)
T 1x43_A           16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSGPSS   80 (81)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECCCCCCC
T ss_pred             CCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECCCCCCC
Confidence            34679999999999999999999999999998  4789999999999999999999999877654

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1.8e-15  Score=118.38  Aligned_cols=62  Identities=31%  Similarity=0.561  Sum_probs=58.0

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCch
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...|.+
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~p~~   78 (79)
T 1x69_A           17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS   78 (79)
T ss_dssp             CCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECCCCCSC
T ss_pred             CeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECCCCCCC
Confidence            45699999999999999999999999999999999999999999999999999999887764

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.62  E-value=3.7e-16  Score=122.86  Aligned_cols=62  Identities=23%  Similarity=0.491  Sum_probs=58.1

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCc
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.++|.
T Consensus        17 ~~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~~~~p~   78 (79)
T 1z9q_A           17 AAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPE   78 (79)
T ss_dssp             SCCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEESSCCCC
T ss_pred             CceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEECCCCCC
Confidence            34569999999999999999999999999999999999999999999999999999988775

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=2.3e-15  Score=120.24  Aligned_cols=59  Identities=32%  Similarity=0.510  Sum_probs=54.4

Q ss_pred             CcceeEeeccCCCC--CCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          316 GYFLGEVVHPYQAE--SDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       316 ~~~~a~alydy~a~--~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ....|+|+|||.+.  +++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+..
T Consensus        15 ~~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   75 (88)
T 2dbk_A           15 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP   75 (88)
T ss_dssp             CCEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEECCS
T ss_pred             CCEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEECCC
Confidence            45679999999955  999999999999999999999999999999999999999999864

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=3.8e-15  Score=116.25  Aligned_cols=60  Identities=27%  Similarity=0.429  Sum_probs=55.6

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (78)
T 2ed0_A           16 YLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISGP   75 (78)
T ss_dssp             CSEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEECSSS
T ss_pred             cCEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEcCCC
Confidence            345799999999999999999999999999999999999999999999999999988643

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=2.1e-15  Score=116.06  Aligned_cols=63  Identities=25%  Similarity=0.443  Sum_probs=57.5

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEee---cCCCeeEEEeCCeeeEecCCCeeeccCCCch
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV---TNNGWAEGECKGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~---~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+..   .++|||.|+++|+.||||++||+.+.+.|.+
T Consensus         7 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   72 (73)
T 2dl7_A            7 GVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGPSS   72 (73)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCSSCCC
T ss_pred             CCEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCCCCCC
Confidence            34679999999999999999999999999998   4789999999999999999999999877654

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.60  E-value=1.6e-15  Score=114.96  Aligned_cols=58  Identities=36%  Similarity=0.614  Sum_probs=53.9

Q ss_pred             CcceeEeeccCCCC--CCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          316 GYFLGEVVHPYQAE--SDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       316 ~~~~a~alydy~a~--~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      +...|+|+|||.+.  +++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.
T Consensus         5 ~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   64 (67)
T 2eyx_A            5 GPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLD   64 (67)
T ss_dssp             CSCBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCBC
T ss_pred             CCEEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEcC
Confidence            34579999999999  99999999999999999999999999999999999999999874

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.60  E-value=1.8e-15  Score=115.63  Aligned_cols=60  Identities=33%  Similarity=0.577  Sum_probs=55.7

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEeCCeeeEecCCCeeeccCCCc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ..|+|+|||++..++||+|.+||+|.|+...  ++|||.|+++|+.||||++||+.+...|+
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~~~~~   64 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEH   64 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECCSCCC
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECCCCcc
Confidence            5799999999999999999999999999985  88999999999999999999999876654

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.60  E-value=1.6e-15  Score=114.87  Aligned_cols=60  Identities=30%  Similarity=0.459  Sum_probs=54.9

Q ss_pred             ceeEeeccCCCC--CCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCc
Q 016699          318 FLGEVVHPYQAE--SDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       318 ~~a~alydy~a~--~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ..|+|+|||.+.  ++++|+|.+||+|.|+...++|||.|.++|+.||||++||+.+.+...
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~~   63 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNP   63 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECCSCC-
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEECCCcCc
Confidence            469999999998  999999999999999999999999999999999999999999865443

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.59  E-value=1.9e-15  Score=116.39  Aligned_cols=61  Identities=23%  Similarity=0.482  Sum_probs=57.6

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ....|+|+|||++.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.++|
T Consensus        12 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~p   72 (73)
T 3c0c_A           12 DQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVPLP   72 (73)
T ss_dssp             CSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCC
T ss_pred             CCeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEECCCCC
Confidence            3467999999999999999999999999999999999999999999999999999998877

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.59  E-value=3.2e-15  Score=113.43  Aligned_cols=60  Identities=22%  Similarity=0.420  Sum_probs=56.1

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISGPS   66 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETTCSCC
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEcCCCC
Confidence            457999999999999999999999999999989999999999999999999999887654

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.59  E-value=1.6e-15  Score=111.49  Aligned_cols=55  Identities=27%  Similarity=0.453  Sum_probs=52.0

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeC--CeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~--G~~G~fP~~YVe~l  372 (384)
                      +.|+|+|||.+.+++||+|.+||+|.|+...++|||.|++.  |+.||||++||+.+
T Consensus         1 p~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            36899999999999999999999999999999999999996  99999999999876

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.59  E-value=2.3e-15  Score=114.69  Aligned_cols=59  Identities=24%  Similarity=0.472  Sum_probs=54.6

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      .+.|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...
T Consensus         3 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   61 (68)
T 2ew3_A            3 QPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPL   61 (68)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEESCC-
T ss_pred             CCEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEcCcc
Confidence            35799999999999999999999999999999999999999999999999999987654

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=3.5e-15  Score=113.34  Aligned_cols=59  Identities=27%  Similarity=0.385  Sum_probs=55.0

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|.++|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSGP   65 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEECCCS
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEECCCC
Confidence            35799999999999999999999999999999999999999999999999999988654

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.59  E-value=2.2e-15  Score=115.93  Aligned_cols=63  Identities=24%  Similarity=0.442  Sum_probs=58.5

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCchh
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASK  379 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa~k  379 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+.++|.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~   69 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHSG   69 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEESSCCSCCS
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEccCCCCCC
Confidence            457999999999999999999999999999989999999999999999999999998877653

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.59  E-value=2.8e-15  Score=110.99  Aligned_cols=56  Identities=27%  Similarity=0.506  Sum_probs=52.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            5 SPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            45799999999999999999999999999999999999999999999999999864

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.59  E-value=2.2e-15  Score=112.34  Aligned_cols=57  Identities=35%  Similarity=0.538  Sum_probs=52.7

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEee-cCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~-~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      .|+|+|||.+.++++|+|.+||+|.|+.. .++|||.|+++|+.||||++||+.+.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   60 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRE   60 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEECC--
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCC
Confidence            58999999999999999999999999999 7899999999999999999999988654

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.59  E-value=2.2e-15  Score=110.79  Aligned_cols=56  Identities=34%  Similarity=0.608  Sum_probs=52.9

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|+...++|||.|+.+|+.||||++||+.+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            2 VEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEEcC
Confidence            35899999999999999999999999999999999999999999999999999874

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.58  E-value=2.9e-15  Score=110.96  Aligned_cols=56  Identities=25%  Similarity=0.584  Sum_probs=53.1

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+.+|+.||||++||+.+
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            4 HMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEEC
Confidence            35699999999999999999999999999999999999999999999999999876

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=5.6e-15  Score=117.91  Aligned_cols=60  Identities=22%  Similarity=0.371  Sum_probs=55.7

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||++.+++||+|.+||+|.|+...++|||.|++.|+.||||.+||+.+...
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (88)
T 1x2q_A           16 VARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNI   75 (88)
T ss_dssp             CCEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESCSSC
T ss_pred             CCeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCc
Confidence            456799999999999999999999999999998999999999999999999999987654

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=99.58  E-value=4.6e-14  Score=131.80  Aligned_cols=222  Identities=14%  Similarity=0.224  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhh
Q 016699            7 QATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGT   86 (384)
Q Consensus         7 ~~~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~   86 (384)
                      -+.-|+.+|.|..|.|..++|+     ++.++ |+       .||.+....+.+..+.++|.+.++.|+..-........
T Consensus         9 ~~~~~~k~~~R~~q~~~~k~G~-----~e~t~-D~-------~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~~~   75 (244)
T 1uru_A            9 LAKSVQKHAGRAKEKILQNLGK-----VDRTA-DE-------IFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASK   75 (244)
T ss_dssp             -----------------CCSSC-----TTCCH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC-----CcccC-CH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556788999999999999883     34443 44       24455555566666788888888887754222223333


Q ss_pred             HHHHHHHH-hhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHH
Q 016699           87 KLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQ  164 (384)
Q Consensus        87 ~l~~~m~~-~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~  164 (384)
                      .||++|.. |+.+.+      .+.++.   .....++..+.+|...+..+|++||..++.  .+++++ +.+|       
T Consensus        76 ~l~~~~~~l~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~vi~Pl~~~~~--~~~~i~~~ikK-------  137 (244)
T 1uru_A           76 TLMDSVCEIYEPQWS------GYDALQ---AQTGASESLWADFAHKLGDQVLIPLNTYTG--QFPEMKKKVEK-------  137 (244)
T ss_dssp             HHHHHHHHHSCTTST------THHHHH---HHHHHHHHHHHHHHHHHHTTTHHHHHHHHH--HHHHHHHHHHH-------
T ss_pred             HHHHHHHHHhCCCCC------CchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-------
Confidence            68899988 433322      223443   344458889999999999999999999995  699999 5555       


Q ss_pred             HHHHhhhhhccCCcccHHHH---HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016699          165 EAEAQLVISSSLKPSQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTL  241 (384)
Q Consensus       165 ele~~~~~~~~l~~~rrld~---kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l  241 (384)
                       .+.           +++|+   +.+..|.++.+.....+.++..|+.+++++++.+..++......++.+......+..
T Consensus       138 -R~~-----------k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~  205 (244)
T 1uru_A          138 -RNR-----------KLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLV  205 (244)
T ss_dssp             -HHH-----------HHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHH-----------HHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence             444           44544   112222221110012234777788888888888888888888888888777777778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          242 QRLIAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       242 ~~L~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      .+|.+|+.+|..||.++..++..|...+..
T Consensus       206 ~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~  235 (244)
T 1uru_A          206 TNLQTLFATEQVFHNETAKIYSELEAIVDK  235 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999998888888776654

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.58  E-value=2.7e-15  Score=110.16  Aligned_cols=56  Identities=25%  Similarity=0.405  Sum_probs=52.9

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ..|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            36899999999999999999999999999989999999999999999999999764

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=4.2e-15  Score=112.89  Aligned_cols=60  Identities=17%  Similarity=0.385  Sum_probs=55.7

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGPS   66 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECCCCC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECCCCC
Confidence            357999999999999999999999999999989999999999999999999999986543

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=5e-15  Score=113.73  Aligned_cols=60  Identities=22%  Similarity=0.380  Sum_probs=55.8

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.+.++++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+...
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (72)
T 2dl8_A            8 EPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTS   67 (72)
T ss_dssp             SCEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEECCSS
T ss_pred             CCEEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEcCCC
Confidence            456799999999999999999999999999998899999999999999999999988654

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.58  E-value=2.4e-15  Score=112.04  Aligned_cols=57  Identities=33%  Similarity=0.546  Sum_probs=53.6

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             CeEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEECC
Confidence            357999999999999999999999999999999999999999999999999998764

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.58  E-value=3.1e-15  Score=112.98  Aligned_cols=58  Identities=36%  Similarity=0.567  Sum_probs=54.1

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||+|||+.+...
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2nwm_A            2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLE   59 (65)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEECCCC
T ss_pred             cEEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEcCCC
Confidence            3689999999999999999999999999999999999999999999999999987643

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=3.2e-15  Score=117.07  Aligned_cols=59  Identities=22%  Similarity=0.439  Sum_probs=54.2

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecC--CCeeEEEeCCeeeEecCCCeeeccC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN--NGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d--~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ....|+|+|||.+..++||+|.+||+|.|+...+  +|||.|+++|+.||||.+||+.+..
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   76 (80)
T 2d8h_A           16 QPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSG   76 (80)
T ss_dssp             SCEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CCEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcCC
Confidence            4567999999999999999999999999999875  8999999999999999999998754

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.58  E-value=4.1e-15  Score=111.41  Aligned_cols=56  Identities=27%  Similarity=0.491  Sum_probs=52.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEeCCeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ...|+|+|||++.+++||+|.+||+|.|+...  ++|||.|+++|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             SEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEEC
Confidence            46799999999999999999999999999875  789999999999999999999876

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.58  E-value=4.4e-15  Score=116.53  Aligned_cols=60  Identities=18%  Similarity=0.264  Sum_probs=55.2

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCC-eeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNG-WAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~g-W~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||++.+++||+|.+||+|.|+...++| ||.|+++|+.||||++||+.+.+.
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   69 (80)
T 2i0n_A            9 FAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSD   69 (80)
T ss_dssp             CCCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESSC
T ss_pred             CCeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCC
Confidence            346799999999999999999999999999998777 999999999999999999998653

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=2.6e-15  Score=114.60  Aligned_cols=62  Identities=27%  Similarity=0.437  Sum_probs=57.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCch
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      ...|+|+|||++..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...|.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~s   69 (70)
T 2ega_A            8 LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGPSS   69 (70)
T ss_dssp             CBCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEESCCCCCC
T ss_pred             CcEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEECCCCCCC
Confidence            45699999999999999999999999999999999999999999999999999998766543

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.57  E-value=4.6e-15  Score=115.98  Aligned_cols=61  Identities=21%  Similarity=0.363  Sum_probs=55.7

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecC----CCeeEEEeCCeeeEecCCCeeeccCCCc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN----NGWAEGECKGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d----~gW~~G~~~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...+    +|||.|+++|+.||||++||+.+...|.
T Consensus        13 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   77 (79)
T 1uhc_A           13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPS   77 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSSCC
T ss_pred             CeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCCCCC
Confidence            346999999999999999999999999999876    8999999999999999999999876554

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.57  E-value=4.8e-15  Score=111.14  Aligned_cols=56  Identities=32%  Similarity=0.655  Sum_probs=52.9

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|++..++|||.|+.+|+.||||++||+.++
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   65 (65)
T 3ulr_B           10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ   65 (65)
T ss_dssp             SCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEECC
Confidence            46999999999999999999999999999999999999999999999999998763

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.57  E-value=2e-15  Score=114.11  Aligned_cols=57  Identities=26%  Similarity=0.525  Sum_probs=53.6

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+..
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   58 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEL   58 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBCCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEcCC
Confidence            468999999999999999999999999999999999999999999999999998753

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.57  E-value=4.6e-15  Score=109.39  Aligned_cols=55  Identities=33%  Similarity=0.692  Sum_probs=52.2

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            5 SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            4699999999999999999999999999999999999999999999999999864

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.57  E-value=4e-15  Score=115.51  Aligned_cols=60  Identities=23%  Similarity=0.400  Sum_probs=55.1

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCC---eeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG---KAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G---~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|++.|   +.||||++||+.+...
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~   71 (76)
T 2ed1_A            9 KVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDS   71 (76)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCCC
T ss_pred             CCeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCCC
Confidence            35679999999999999999999999999998899999999866   9999999999998654

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.57  E-value=4.6e-15  Score=111.13  Aligned_cols=58  Identities=31%  Similarity=0.672  Sum_probs=54.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||.+.++++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             CEEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            3579999999999999999999999999999899999999999999999999998754

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.57  E-value=4.7e-15  Score=108.98  Aligned_cols=55  Identities=27%  Similarity=0.557  Sum_probs=52.3

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            4699999999999999999999999999999999999999999999999999864

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.57  E-value=4.9e-15  Score=108.73  Aligned_cols=55  Identities=20%  Similarity=0.436  Sum_probs=52.5

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ..|+|+|||.+.++++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEC
Confidence            4699999999999999999999999999999999999999999999999999875

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.56  E-value=2.3e-15  Score=114.50  Aligned_cols=60  Identities=23%  Similarity=0.288  Sum_probs=55.5

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeec---CCCeeEEEeCCeeeEecCCCeeeccCCCc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT---NNGWAEGECKGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~---d~gW~~G~~~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|+...   ++|||.|+++|+.||||++||+.+.+.+.
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   66 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYD   66 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEEEEEE
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECCCCCC
Confidence            4699999999999999999999999999987   79999999999999999999999876544

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=7e-15  Score=111.52  Aligned_cols=59  Identities=19%  Similarity=0.317  Sum_probs=54.8

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECCCCS
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEECCCC
Confidence            35699999999999999999999999999999999999999999999999999987544

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=7.6e-15  Score=114.81  Aligned_cols=60  Identities=28%  Similarity=0.473  Sum_probs=55.0

Q ss_pred             CCcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccCC
Q 016699          315 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       315 ~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~~  375 (384)
                      .....|+|+|||.+..++||+|.+||+|.|+.. ++|||.|++  +|+.||||++||+.+...
T Consensus        15 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~~   76 (79)
T 1x6b_A           15 GDLPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISGP   76 (79)
T ss_dssp             SSCCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEESS
T ss_pred             CCCCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCCC
Confidence            345689999999999999999999999999999 999999999  999999999999987543

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.56  E-value=4.9e-15  Score=108.71  Aligned_cols=55  Identities=25%  Similarity=0.599  Sum_probs=52.5

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ..|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEEC
Confidence            5699999999999999999999999999998999999999999999999999876

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.56  E-value=7.8e-15  Score=111.18  Aligned_cols=60  Identities=32%  Similarity=0.448  Sum_probs=55.6

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+...+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSGPS   66 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEECCSCC
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEECCCCC
Confidence            457999999999999999999999999999989999999999999999999999886543

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.56  E-value=8.3e-15  Score=112.63  Aligned_cols=59  Identities=34%  Similarity=0.587  Sum_probs=54.5

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...  ++|||.|+++|+.||||++||+.+.+
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   68 (73)
T 2k9g_A            8 SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP   68 (73)
T ss_dssp             SCEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             CccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECCc
Confidence            346799999999999999999999999999985  89999999999999999999998754

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.56  E-value=4.4e-15  Score=109.99  Aligned_cols=55  Identities=24%  Similarity=0.373  Sum_probs=52.0

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeee
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER  371 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~  371 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   60 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV   60 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEC
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEEC
Confidence            4679999999999999999999999999999889999999999999999999973

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=5.8e-15  Score=114.64  Aligned_cols=60  Identities=22%  Similarity=0.388  Sum_probs=55.7

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ...|+|+|||++..++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+.+..
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   69 (76)
T 2epd_A           10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTE   69 (76)
T ss_dssp             CEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECCSSCS
T ss_pred             CEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCCC
Confidence            467999999999999999999999999999988999999999999999999999886543

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=6.6e-15  Score=112.42  Aligned_cols=60  Identities=18%  Similarity=0.271  Sum_probs=55.6

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec---CCCeeEEEeCCeeeEecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT---NNGWAEGECKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~---d~gW~~G~~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+...   ++|||.|+++|+.||||++||+.+.+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   69 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSGPS   69 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCCST
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCCCC
Confidence            46799999999999999999999999999987   8999999999999999999999986654

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=1e-14  Score=114.35  Aligned_cols=61  Identities=21%  Similarity=0.276  Sum_probs=56.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...++
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~   68 (80)
T 2ekh_A            8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQP   68 (80)
T ss_dssp             CEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECCCCCCC
T ss_pred             CCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEECCCCCC
Confidence            3579999999999999999999999999999999999999999999999999999876543

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=7.4e-15  Score=114.58  Aligned_cols=62  Identities=23%  Similarity=0.331  Sum_probs=55.8

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecC-CCeeEEEeC-CeeeEecCCCeeeccCCCc
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN-NGWAEGECK-GKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d-~gW~~G~~~-G~~G~fP~~YVe~l~~~pa  377 (384)
                      ....|+|+|||.+..++||+|.+||+|.|+...+ +|||.|++. |+.||||.+||+.+...++
T Consensus        12 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   75 (78)
T 2dl5_A           12 YPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSSGP   75 (78)
T ss_dssp             SSEEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSCCCCS
T ss_pred             CCcEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECCCCCC
Confidence            4567999999999999999999999999999975 899999995 9999999999999875543

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.56  E-value=3.2e-15  Score=113.41  Aligned_cols=60  Identities=33%  Similarity=0.496  Sum_probs=55.7

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 1wi7_A            7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGPS   66 (68)
T ss_dssp             CCCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEECCSSC
T ss_pred             CCEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEECCCCC
Confidence            356999999999999999999999999999988999999999999999999999987654

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.56  E-value=3.8e-15  Score=113.56  Aligned_cols=60  Identities=22%  Similarity=0.392  Sum_probs=55.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+.. ++|||.|+++|+.||||++||+.+.+.+.
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   67 (69)
T 1uhf_A            8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPS   67 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCCCC
T ss_pred             CCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEeCCcEEEEchHHeEECCCCCC
Confidence            4579999999999999999999999999998 78999999999999999999999876654

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.56  E-value=6e-15  Score=112.75  Aligned_cols=58  Identities=29%  Similarity=0.579  Sum_probs=54.0

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||.+.++++|+|.+||+|.|++..++|||.|+++|+.||||.+||+.+..
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           13 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEEC-
T ss_pred             CeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEECCC
Confidence            4579999999999999999999999999999999999999999999999999998753

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.56  E-value=6.5e-15  Score=111.77  Aligned_cols=57  Identities=21%  Similarity=0.421  Sum_probs=52.4

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCC-----eeeEecCCCeeec
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG-----KAGWFPFGYIERR  372 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G-----~~G~fP~~YVe~l  372 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|++.+     +.||||+|||+.+
T Consensus         6 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            6 VPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             SSEEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             CCEEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            34579999999999999999999999999999999999999855     9999999999865

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.55  E-value=8e-15  Score=111.95  Aligned_cols=61  Identities=30%  Similarity=0.341  Sum_probs=56.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEe--CCeeeEecCCCeeeccCCCc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGEC--KGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~--~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ...|+|+|||.+.++++|+|.+||+|.|+... ++|||.|++  +|+.||||.+||+.+.+...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~   69 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKKH   69 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTTSSC
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCCcCC
Confidence            46799999999999999999999999999987 899999999  99999999999999876554

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.55  E-value=5.3e-15  Score=112.51  Aligned_cols=61  Identities=18%  Similarity=0.289  Sum_probs=51.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccCCCch
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+.. ++|||.|+. +|+.||||+|||+.+.++|.+
T Consensus         4 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~~Ww~~~~~~g~~G~~Psnyv~~~~~~~~~   65 (67)
T 2b86_A            4 EVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVERKLEHHHH   65 (67)
T ss_dssp             CEEEEESSCBCCSSTTSCCBCTTCEEEEEEC-SSSSCEEECTTSCEEECCCCSEEEC------
T ss_pred             CeEEEEeeeECCCCCCccccCCCCEEEEEec-CCCeEEEEeCCCCEEEeChHHEeEcCCCCCC
Confidence            3569999999999999999999999999998 579999995 899999999999999888754

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.55  E-value=7.9e-15  Score=112.06  Aligned_cols=61  Identities=18%  Similarity=0.363  Sum_probs=56.0

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEee--cCCCeeEEE-eCCeeeEecCCCeeeccCCCc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGE-CKGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~--~d~gW~~G~-~~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+..  .++|||.|+ .+|+.||||++||+.+.+.|+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   69 (71)
T 1u5s_A            6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPA   69 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSCC
T ss_pred             cEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCCCCC
Confidence            4579999999999999999999999999998  689999998 599999999999999977665

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=8.8e-15  Score=114.91  Aligned_cols=60  Identities=23%  Similarity=0.443  Sum_probs=55.8

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+...
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (81)
T 2ysq_A            9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQ   68 (81)
T ss_dssp             CCEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEESSCC
T ss_pred             CceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEcCCc
Confidence            356799999999999999999999999999998999999999999999999999998643

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.1e-14  Score=112.94  Aligned_cols=62  Identities=21%  Similarity=0.317  Sum_probs=56.1

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe----CCeeeEecCCCeeeccCCCch
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC----KGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~----~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      ....|+|+|||.+. ++||+|.+||+|.|++..++|||.|++    +|+.||||++||+.+.+.|.+
T Consensus         9 ~~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~~~~s   74 (75)
T 2egc_A            9 LKDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSGPSS   74 (75)
T ss_dssp             CCEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCSCSSC
T ss_pred             CCeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCCCCCC
Confidence            35679999999999 999999999999999999999999998    479999999999999876654

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=99.55  E-value=2.2e-13  Score=140.31  Aligned_cols=56  Identities=23%  Similarity=0.499  Sum_probs=0.0

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEeC-CeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECK-GKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~~-G~~G~fP~~YVe~l  372 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+... ++|||.|++. |+.||||+|||+.+
T Consensus       428 ~~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             ----------------------------------------------------------
T ss_pred             CeEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHceeC
Confidence            34699999999999999999999999999886 4599999996 99999999999875

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.55  E-value=6.1e-15  Score=110.38  Aligned_cols=57  Identities=26%  Similarity=0.526  Sum_probs=53.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ...|+|+|||.+.++++|+|.+||+|.|++..++|||.|+.+|+.||||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEECc
Confidence            457999999999999999999999999999989999999999999999999999864

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.55  E-value=7.2e-15  Score=108.62  Aligned_cols=55  Identities=25%  Similarity=0.506  Sum_probs=51.6

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEeCCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|+...  ++|||.|+++|+.||||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEEC
Confidence            4699999999999999999999999999986  789999999999999999999864

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.55  E-value=7.8e-15  Score=112.61  Aligned_cols=57  Identities=21%  Similarity=0.445  Sum_probs=53.3

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeec
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  372 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l  372 (384)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|++  +|+.||||.+||+.+
T Consensus        14 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           14 GVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             TTCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            345799999999999999999999999999999999999998  899999999999876

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.55  E-value=8.3e-15  Score=107.49  Aligned_cols=55  Identities=35%  Similarity=0.681  Sum_probs=52.2

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ..|+|+|||++.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            4699999999999999999999999999999999999999999999999999864

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.55  E-value=1.3e-14  Score=111.91  Aligned_cols=57  Identities=23%  Similarity=0.413  Sum_probs=53.0

Q ss_pred             CCcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeee
Q 016699          315 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER  371 (384)
Q Consensus       315 ~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~  371 (384)
                      .....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.
T Consensus        15 ~~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           15 HEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             CCCEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             CCCeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            345679999999999999999999999999999899999999999999999999974

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.55  E-value=9.9e-15  Score=106.87  Aligned_cols=55  Identities=35%  Similarity=0.653  Sum_probs=52.1

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      .|+|+|||.+.++++|+|.+||+|.|++..++|||.|..+|+.||||++||+...
T Consensus         3 ~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEECC
Confidence            6899999999999999999999999999999999999999999999999998753

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.55  E-value=8.7e-15  Score=111.63  Aligned_cols=59  Identities=34%  Similarity=0.570  Sum_probs=54.6

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+...  ++|||.|+++|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSGP   67 (70)
T ss_dssp             SEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECCCC
T ss_pred             CcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECCCC
Confidence            46799999999999999999999999999985  889999999999999999999988654

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.55  E-value=8.5e-15  Score=108.65  Aligned_cols=56  Identities=32%  Similarity=0.500  Sum_probs=53.1

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ...|+|+|||.+.++++|+|.+||+|.|+...++|||.|+.+|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            6 KELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEEC
Confidence            45799999999999999999999999999999999999999999999999999876

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.55  E-value=1e-14  Score=110.91  Aligned_cols=59  Identities=29%  Similarity=0.393  Sum_probs=54.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (69)
T 2dil_A            8 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSGP   66 (69)
T ss_dssp             CCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBCCCS
T ss_pred             CcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEcCCC
Confidence            45799999999999999999999999999998999999999999999999999987644

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=116.53  Aligned_cols=62  Identities=18%  Similarity=0.340  Sum_probs=55.7

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEee--cCCCeeEEE-eCCeeeEecCCCeeeccCCCc
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGE-CKGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~--~d~gW~~G~-~~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ....|+|+|||++..++||+|.+||+|.|+..  .++|||.|+ .+|+.||||.+||+.+...++
T Consensus        16 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   80 (91)
T 1wx6_A           16 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPA   80 (91)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEESSS
T ss_pred             ccEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCCcCC
Confidence            45679999999999999999999999999998  688999999 599999999999999865443

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.54  E-value=5.1e-15  Score=113.79  Aligned_cols=59  Identities=27%  Similarity=0.448  Sum_probs=53.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEee-cCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~-~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+.. .++|||.|+++|+.||||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCCC
Confidence            3569999999999999999999999998884 6889999999999999999999988654

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.4e-14  Score=109.99  Aligned_cols=58  Identities=19%  Similarity=0.455  Sum_probs=54.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2k_A            7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSG   64 (68)
T ss_dssp             SEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEECCC
T ss_pred             cEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEcCC
Confidence            4679999999999999999999999999999899999999999999999999998743

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.54  E-value=9.2e-15  Score=108.84  Aligned_cols=56  Identities=23%  Similarity=0.319  Sum_probs=52.2

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEE--eCCeeeEecCCCeeecc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRD  373 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~--~~G~~G~fP~~YVe~l~  373 (384)
                      ..|+|+|||.+..++||+|.+||+|.|+...++|||.|+  .+|+.||||++||+.+.
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            469999999999999999999999999999999999999  48999999999999764

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.54  E-value=1e-14  Score=109.72  Aligned_cols=57  Identities=18%  Similarity=0.272  Sum_probs=52.9

Q ss_pred             cceeEeeccCCC-CCCCCcccCCCCEEEEEeecCCCeeEEE--eCCeeeEecCCCeeecc
Q 016699          317 YFLGEVVHPYQA-ESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRD  373 (384)
Q Consensus       317 ~~~a~alydy~a-~~~~ELsf~~GdiI~V~~~~d~gW~~G~--~~G~~G~fP~~YVe~l~  373 (384)
                      ...++|+|||.+ .+++||+|.+||+|.|+...++|||.|+  .+|+.||||++||+.+.
T Consensus         5 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             TCEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CcEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            356999999999 9999999999999999999999999999  58999999999999764

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.54  E-value=8.2e-15  Score=119.00  Aligned_cols=59  Identities=25%  Similarity=0.474  Sum_probs=54.4

Q ss_pred             CcceeEeeccCCCCC------CCCcccCCCCEEEEE-eecCCCeeEEEe-CCeeeEecCCCeeeccC
Q 016699          316 GYFLGEVVHPYQAES------DVELTLSVGDYVVVR-KVTNNGWAEGEC-KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       316 ~~~~a~alydy~a~~------~~ELsf~~GdiI~V~-~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~  374 (384)
                      ....|+|||||++.+      ++||+|.+||+|.|+ ...++|||.|++ +|+.||||+|||+.+..
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~   82 (96)
T 1wie_A           16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQD   82 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCS
T ss_pred             CCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCC
Confidence            456799999999988      999999999999999 778899999999 99999999999998764

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.54  E-value=1.2e-14  Score=113.25  Aligned_cols=60  Identities=22%  Similarity=0.366  Sum_probs=55.6

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...+++||.|+++|+.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (78)
T 2yuo_A            6 SGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDER   65 (78)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEECCC
T ss_pred             CceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEECCCc
Confidence            346799999999999999999999999999999999999999999999999999988643

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.54  E-value=9.3e-15  Score=111.85  Aligned_cols=59  Identities=22%  Similarity=0.293  Sum_probs=53.5

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEE--eCCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~--~~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|+|.+..++||+|.+||+|.|+...++|||.|+  .+|+.||||++||+.+...
T Consensus         6 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~~   66 (71)
T 2fpf_A            6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKE   66 (71)
T ss_dssp             CCCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC--
T ss_pred             CeEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCCC
Confidence            3569999999999999999999999999999999999999  5899999999999988654

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1e-14  Score=116.89  Aligned_cols=59  Identities=24%  Similarity=0.518  Sum_probs=54.6

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeC--CeeeEecCCCeeeccC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIERRDR  374 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~--G~~G~fP~~YVe~l~~  374 (384)
                      ....|+|+|||++.+++||+|.+||+|.|+...++|||.|++.  |+.||||.+||+.+..
T Consensus        16 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~   76 (90)
T 2yup_A           16 EYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSRE   76 (90)
T ss_dssp             GSEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEEC
T ss_pred             cceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            4567999999999999999999999999999989999999996  9999999999998753

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=115.02  Aligned_cols=59  Identities=22%  Similarity=0.407  Sum_probs=54.8

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEee--cCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~--~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+..  .++|||.|+++|+.||||++||+.+..
T Consensus         7 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   67 (85)
T 2dlp_A            7 GSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAA   67 (85)
T ss_dssp             CCCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCC
T ss_pred             CCEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCC
Confidence            34679999999999999999999999999987  889999999999999999999998854

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.2e-14  Score=114.53  Aligned_cols=61  Identities=31%  Similarity=0.580  Sum_probs=56.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+.+.+.
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~   77 (88)
T 2cub_A           17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPL   77 (88)
T ss_dssp             CEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEECCCCCS
T ss_pred             CCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEECCCccc
Confidence            4579999999999999999999999999999999999999999999999999999865543

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.53  E-value=9.8e-15  Score=111.65  Aligned_cols=58  Identities=16%  Similarity=0.376  Sum_probs=51.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEe-ecCCCeeEEE-eCCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRK-VTNNGWAEGE-CKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~-~~d~gW~~G~-~~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||++.+++||+|.+||+|.|+. ..++|||.|+ .+|+.||||++||+.+..
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   70 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   70 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC---
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEccC
Confidence            356999999999999999999999999999 6789999999 599999999999987643

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.53  E-value=1.3e-14  Score=109.69  Aligned_cols=55  Identities=18%  Similarity=0.349  Sum_probs=52.3

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l  372 (384)
                      ..|+|+|||.+.++++|+|.+||+|.|+...++|||.|++ +|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            4699999999999999999999999999999999999995 999999999999987

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.7e-14  Score=111.38  Aligned_cols=59  Identities=24%  Similarity=0.378  Sum_probs=54.5

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeC--CeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~--G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|++.  |+.||||++||+.+.+.
T Consensus         5 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~~   65 (73)
T 2lcs_A            5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPE   65 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCSS
T ss_pred             CCEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCCC
Confidence            357999999999999999999999999999999999999994  89999999999998654

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.53  E-value=1.4e-14  Score=107.48  Aligned_cols=56  Identities=27%  Similarity=0.526  Sum_probs=52.4

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeee-EecCCCeeecc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAG-WFPFGYIERRD  373 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G-~fP~~YVe~l~  373 (384)
                      ..|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|..| |||++||+.+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEECC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEECC
Confidence            469999999999999999999999999999999999999988886 99999999874

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.53  E-value=1.3e-14  Score=111.40  Aligned_cols=60  Identities=27%  Similarity=0.427  Sum_probs=54.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ...|+|+|||.+.++++|+|.+||+|.|+...++|||.|+.+|+.||||.+||+.+.+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   64 (73)
T 3thk_A            5 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ   64 (73)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCC--
T ss_pred             CEEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEECCCCC
Confidence            457999999999999999999999999999999999999999999999999999987543

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.53  E-value=1.3e-14  Score=114.96  Aligned_cols=59  Identities=27%  Similarity=0.454  Sum_probs=54.6

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|..+|+.||||++||+.+..
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   74 (83)
T 1neg_A           16 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAA   74 (83)
T ss_dssp             -CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCT
T ss_pred             CceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEECCC
Confidence            34679999999999999999999999999999899999999999999999999998854

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.53  E-value=4.5e-14  Score=111.84  Aligned_cols=59  Identities=24%  Similarity=0.443  Sum_probs=54.2

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+... +|||.|++  +|+.||||++||+.+..+
T Consensus        24 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   84 (86)
T 2oi3_A           24 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSL   84 (86)
T ss_dssp             TSEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGGGC
T ss_pred             CCcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEcccC
Confidence            346799999999999999999999999999988 69999999  999999999999988654

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.3e-14  Score=110.87  Aligned_cols=58  Identities=28%  Similarity=0.423  Sum_probs=54.7

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ...++|+|||.+.+++||+|.+||+|.|+...++|||.|++.|+.||||.+||+.+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (71)
T 2dnu_A            8 EEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKD   65 (71)
T ss_dssp             SEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEECCC
T ss_pred             CCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEccC
Confidence            4579999999999999999999999999999899999999999999999999998864

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.53  E-value=2e-14  Score=115.46  Aligned_cols=64  Identities=20%  Similarity=0.398  Sum_probs=55.7

Q ss_pred             CcceeEeeccCCCCCCC-CcccCCCCEEEEEeecCC-----CeeEEEe-CCeeeEecCCCeeeccCCCchh
Q 016699          316 GYFLGEVVHPYQAESDV-ELTLSVGDYVVVRKVTNN-----GWAEGEC-KGKAGWFPFGYIERRDRVLASK  379 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~-ELsf~~GdiI~V~~~~d~-----gW~~G~~-~G~~G~fP~~YVe~l~~~pa~k  379 (384)
                      ....|+|+|||.+.+++ ||+|.+||+|.|+...+.     |||.|++ +|+.||||++||+.+...++..
T Consensus        13 ~~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~~~~~   83 (92)
T 1jqq_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRRKKIE   83 (92)
T ss_dssp             TCEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC----
T ss_pred             cCEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCCCCCc
Confidence            45679999999999999 999999999999999876     9999999 8999999999999987665544

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.7e-14  Score=111.01  Aligned_cols=58  Identities=31%  Similarity=0.532  Sum_probs=53.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...  ++|||.|+++|+.||||.+||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGI   66 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECCC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcCC
Confidence            35699999999999999999999999999987  45999999999999999999998754

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.53  E-value=1.2e-14  Score=109.68  Aligned_cols=57  Identities=21%  Similarity=0.487  Sum_probs=52.8

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEE-eCCeeeEecCCCeeeccC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~-~~G~~G~fP~~YVe~l~~  374 (384)
                      ..|+|+|||.+..++||+|.+||+|.|+...++|||.|+ .+|+.||||++||+...+
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   61 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH   61 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC-
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecCC
Confidence            569999999999999999999999999999899999999 599999999999988754

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.2e-14  Score=105.19  Aligned_cols=52  Identities=35%  Similarity=0.732  Sum_probs=49.3

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeecC-CCeeEEEeCCeeeEecCCCee
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTN-NGWAEGECKGKAGWFPFGYIE  370 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d-~gW~~G~~~G~~G~fP~~YVe  370 (384)
                      +|+|+|||.+.+++||+|.+||+|.|+...+ +|||.|+++|+.||||++||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            5899999999999999999999999999985 799999999999999999985

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.53  E-value=1.3e-14  Score=112.46  Aligned_cols=58  Identities=28%  Similarity=0.663  Sum_probs=54.7

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+.
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (76)
T 1ujy_A            9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIK   66 (76)
T ss_dssp             CCEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECC
T ss_pred             CCEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEECC
Confidence            3467999999999999999999999999999989999999999999999999999885

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.53  E-value=1.6e-14  Score=106.57  Aligned_cols=55  Identities=33%  Similarity=0.419  Sum_probs=51.5

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEee-cCCCeeEEEe--CCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGEC--KGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~-~d~gW~~G~~--~G~~G~fP~~YVe~l  372 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|+.. .++|||.|++  +|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            579999999999999999999999999998 5899999999  999999999999864

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.52  E-value=1.1e-14  Score=106.45  Aligned_cols=54  Identities=22%  Similarity=0.532  Sum_probs=50.4

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEE-eCCeeeEecCCCeeec
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERR  372 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~-~~G~~G~fP~~YVe~l  372 (384)
                      .|+|+|||.+.++++|+|.+||+|.|+...++|||.|+ .+|+.||||++||+.+
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             EEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            58999999999999999999999999999899999999 5999999999999864

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.52  E-value=2.2e-14  Score=110.71  Aligned_cols=59  Identities=25%  Similarity=0.491  Sum_probs=53.9

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.+..++||+|.+||+|.|+.. ++|||.|+++|+.||||.+||+.+...
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (74)
T 1j3t_A            9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CCeEEEECCCCCCCCCCccCCCCCCEEEEEec-CCCEEEEEECCcEEEEchHHeEECCCC
Confidence            34679999999999999999999999999998 579999999999999999999988643

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.8e-14  Score=111.57  Aligned_cols=57  Identities=23%  Similarity=0.330  Sum_probs=52.6

Q ss_pred             cceeEeeccCCCCC-------CCCcccCCCCEEEEEe-ecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          317 YFLGEVVHPYQAES-------DVELTLSVGDYVVVRK-VTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       317 ~~~a~alydy~a~~-------~~ELsf~~GdiI~V~~-~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ...|+|+|||++..       +++|+|.+||+|.|+. ..++|||.|+++|+.||||+|||+.+.
T Consensus         7 ~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   71 (75)
T 2ege_A            7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMS   71 (75)
T ss_dssp             SEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEECC
T ss_pred             CcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEcc
Confidence            45799999999999       9999999999999997 478999999999999999999999873

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.52  E-value=1.6e-14  Score=106.10  Aligned_cols=54  Identities=20%  Similarity=0.507  Sum_probs=51.5

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeee
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER  371 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~  371 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            469999999999999999999999999999899999999999999999999974

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=3e-14  Score=115.85  Aligned_cols=59  Identities=17%  Similarity=0.263  Sum_probs=53.0

Q ss_pred             CcceeEeeccCCCC--------CCCCcccCCCCEEEEEee-cCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          316 GYFLGEVVHPYQAE--------SDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       316 ~~~~a~alydy~a~--------~~~ELsf~~GdiI~V~~~-~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ....|+|+|||++.        .++||+|.+||+|.|+.. .++|||.|+++|+.||||++||+.+..
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   83 (97)
T 2csq_A           16 PARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQA   83 (97)
T ss_dssp             CCEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECCC
T ss_pred             CceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECCC
Confidence            34579999999998        799999999999999965 567899999999999999999998864

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.52  E-value=1.1e-14  Score=115.32  Aligned_cols=59  Identities=20%  Similarity=0.395  Sum_probs=53.3

Q ss_pred             CCcceeEeeccC-CCCCCCCcccCCCCEEEEEeecCCCeeEEEeC------CeeeEecCCCeeecc
Q 016699          315 MGYFLGEVVHPY-QAESDVELTLSVGDYVVVRKVTNNGWAEGECK------GKAGWFPFGYIERRD  373 (384)
Q Consensus       315 ~~~~~a~alydy-~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~------G~~G~fP~~YVe~l~  373 (384)
                      .....|+|+||| .+.+++||+|.+||+|.|+...++|||.|++.      |+.||||+|||+.+.
T Consensus        16 ~~~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           16 RGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             -CCEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             CCCeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            345689999999 79999999999999999999999999999984      799999999999764

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.52  E-value=1.6e-14  Score=110.80  Aligned_cols=60  Identities=23%  Similarity=0.426  Sum_probs=54.2

Q ss_pred             CcceeEeeccCCC-CCCCCcccCCCCEEEEEee-cCCCeeEEEeC--CeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQA-ESDVELTLSVGDYVVVRKV-TNNGWAEGECK--GKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a-~~~~ELsf~~GdiI~V~~~-~d~gW~~G~~~--G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.+ .+++||+|.+||+|.|+.. .++|||.|++.  |+.||||++||+.+...
T Consensus         6 ~~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   69 (72)
T 1spk_A            6 SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             CSCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             CceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCCC
Confidence            3467999999996 9999999999999999987 78999999996  99999999999988653

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.52  E-value=1.8e-14  Score=107.29  Aligned_cols=56  Identities=23%  Similarity=0.413  Sum_probs=52.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|++.|+.||||++||+..
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD   60 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEESC
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEEe
Confidence            35799999999999999999999999999998999999999999999999999853

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.52  E-value=1.3e-14  Score=113.46  Aligned_cols=60  Identities=22%  Similarity=0.442  Sum_probs=53.4

Q ss_pred             CcceeEeeccCCCCCCC-CcccCCCCEEEEEeecCC-----CeeEEEe-CCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDV-ELTLSVGDYVVVRKVTNN-----GWAEGEC-KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~-ELsf~~GdiI~V~~~~d~-----gW~~G~~-~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.+.+++ ||+|.+||+|.|+...+.     |||.|++ +|+.||||++||+.+.+.
T Consensus        13 ~~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   79 (80)
T 2v1r_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRR   79 (80)
T ss_dssp             GCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC---
T ss_pred             cCEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCCC
Confidence            45679999999999999 999999999999999876     9999999 899999999999988643

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.52  E-value=1.8e-14  Score=109.59  Aligned_cols=59  Identities=22%  Similarity=0.349  Sum_probs=53.8

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCee-eEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA-GWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~-G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||++..++||+|.+||+|.|+...++|||.|++.+.. ||||++||+.+.+.
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~~   66 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGP   66 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCSC
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECccC
Confidence            457999999999999999999999999999989999999997766 99999999988654

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.2e-14  Score=111.33  Aligned_cols=57  Identities=18%  Similarity=0.279  Sum_probs=53.2

Q ss_pred             ceeEeeccCCC-CCCCCcccCCCCEEEEEeecCCCeeEEE--eCCeeeEecCCCeeeccC
Q 016699          318 FLGEVVHPYQA-ESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       318 ~~a~alydy~a-~~~~ELsf~~GdiI~V~~~~d~gW~~G~--~~G~~G~fP~~YVe~l~~  374 (384)
                      ..|+|+|||.+ .+++||+|.+||+|.|+...++|||.|+  .+|+.||||+|||+.+..
T Consensus         8 ~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG   67 (71)
T ss_dssp             CCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCC
T ss_pred             CEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            46999999999 9999999999999999999999999999  589999999999998854

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=2.8e-14  Score=111.40  Aligned_cols=59  Identities=34%  Similarity=0.557  Sum_probs=54.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSN   65 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEESSC
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEECCCC
Confidence            45799999999999999999999999999998999999999999999999999988643

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.51  E-value=2.2e-14  Score=115.63  Aligned_cols=59  Identities=29%  Similarity=0.609  Sum_probs=54.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||++.+++||+|.+||+|.|+...  ++|||.|+++|+.||||.+||+.+...
T Consensus         5 ~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   65 (93)
T 1uff_A            5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             CEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCCc
Confidence            45699999999999999999999999999985  789999999999999999999998654

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.51  E-value=2.4e-14  Score=104.85  Aligned_cols=54  Identities=28%  Similarity=0.555  Sum_probs=50.7

Q ss_pred             ceeEeeccC-CCCCCCCcccCCCCEEEEEeecCCCeeEEEeC--CeeeEecCCCeee
Q 016699          318 FLGEVVHPY-QAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIER  371 (384)
Q Consensus       318 ~~a~alydy-~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~--G~~G~fP~~YVe~  371 (384)
                      +.|+|+||| .+..+++|+|.+||+|.|+...++|||.|++.  |+.||||++||+.
T Consensus         1 p~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            1 PMFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             CEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             CEEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            468999999 89999999999999999999999999999996  9999999999974

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.51  E-value=1.8e-14  Score=108.89  Aligned_cols=57  Identities=26%  Similarity=0.548  Sum_probs=50.7

Q ss_pred             CcceeEeeccCCCCCCCC-cccCCCCEEEEEee-cCCCeeEEE--eCCeeeEecCCCeeec
Q 016699          316 GYFLGEVVHPYQAESDVE-LTLSVGDYVVVRKV-TNNGWAEGE--CKGKAGWFPFGYIERR  372 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~E-Lsf~~GdiI~V~~~-~d~gW~~G~--~~G~~G~fP~~YVe~l  372 (384)
                      ....|+|+|||.+.++++ |+|.+||+|.|+.. .++|||.|+  ++|+.||||+|||+.+
T Consensus         6 ~~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            6 GRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CCCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            345799999999988777 99999999999964 688999999  5899999999999876

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.51  E-value=1.1e-14  Score=117.63  Aligned_cols=63  Identities=32%  Similarity=0.478  Sum_probs=57.4

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCch
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||+|||+.+.+.+..
T Consensus        17 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~~~~~~~   79 (92)
T 2o2o_A           17 RRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDE   79 (92)
T ss_dssp             SSCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECCSSCSST
T ss_pred             CCeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEECCCCCcc
Confidence            346799999999999999999999999999998999999999999999999999998765443

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.51  E-value=2.4e-14  Score=106.72  Aligned_cols=55  Identities=29%  Similarity=0.553  Sum_probs=51.8

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l  372 (384)
                      ..|+|+|||.+..++||+|.+||+|.|+...++|||.|++  +|+.||||++||+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             -CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            4699999999999999999999999999999999999999  899999999999876

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.51  E-value=1.1e-13  Score=116.85  Aligned_cols=57  Identities=25%  Similarity=0.444  Sum_probs=52.4

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe---CCeeeEecCCCeeecc
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIERRD  373 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~---~G~~G~fP~~YVe~l~  373 (384)
                      ....|+|+|||++..++||+|.+||+|.|+... +|||+|++   +|+.||||+|||+.+.
T Consensus        58 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           58 KERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CCEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             CceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEec
Confidence            346799999999999999999999999999986 69999999   8999999999998764

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.51  E-value=2.6e-14  Score=106.38  Aligned_cols=55  Identities=20%  Similarity=0.516  Sum_probs=50.2

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEE--eCCeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~--~~G~~G~fP~~YVe~l  372 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+... +|||.|+  .+|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             TCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            45799999999999999999999999999985 5999999  4899999999999853

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.51  E-value=3.3e-14  Score=105.76  Aligned_cols=57  Identities=26%  Similarity=0.442  Sum_probs=51.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEee-cCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~-~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+.. .+.+||.|+++|+.||||++||+.+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TTEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             CEEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEECC
Confidence            4579999999999999999999999999995 46679999999999999999998764

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.51  E-value=1.7e-14  Score=108.04  Aligned_cols=55  Identities=29%  Similarity=0.474  Sum_probs=51.5

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeC--------CeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--------GKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~--------G~~G~fP~~YVe~l  372 (384)
                      ..|+|+|||.+..+++|+|.+||+|.|+...++|||.|++.        |+.||||++||+.+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             cEEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            36899999999999999999999999999999999999986        89999999999876

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.51  E-value=2.9e-14  Score=108.22  Aligned_cols=58  Identities=21%  Similarity=0.296  Sum_probs=53.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEE-eCCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~-~~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+.. ++|||.|+ .+|+.||||++||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDH-SKRWWLVKNEAGRSGYIPSNILEPLSGP   65 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEEC-SSSEEEEECTTSCEEEEEGGGEECCCCS
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEc-CCCEEEEEECCCCEEEEEhHHcEECCCC
Confidence            4579999999999999999999999999998 58999999 6999999999999988654

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.51  E-value=2.3e-14  Score=109.10  Aligned_cols=59  Identities=27%  Similarity=0.426  Sum_probs=54.5

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEE--eCCeeeEecCCCeeeccCCC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~--~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ..|+|+|+|.+..++||+|.+||+|.|+...++|||.|+  .+|+.||||++||+.+...+
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   68 (70)
T 2cuc_A            8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGPS   68 (70)
T ss_dssp             CCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCTT
T ss_pred             cEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcCCC
Confidence            469999999999999999999999999999889999999  59999999999999886544

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.51  E-value=2.2e-14  Score=108.46  Aligned_cols=57  Identities=25%  Similarity=0.490  Sum_probs=52.2

Q ss_pred             cceeEeeccCCC-CCCCCcccCCCCEEEEEee-cCCCeeEEEeC--CeeeEecCCCeeecc
Q 016699          317 YFLGEVVHPYQA-ESDVELTLSVGDYVVVRKV-TNNGWAEGECK--GKAGWFPFGYIERRD  373 (384)
Q Consensus       317 ~~~a~alydy~a-~~~~ELsf~~GdiI~V~~~-~d~gW~~G~~~--G~~G~fP~~YVe~l~  373 (384)
                      ...|+|+|||.+ .+++||+|.+||+|.|+.. .++|||.|++.  |+.||||++||+.+.
T Consensus         6 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             CEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            457999999996 9999999999999999986 78999999996  999999999999764

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.51  E-value=1.9e-14  Score=110.73  Aligned_cols=56  Identities=27%  Similarity=0.504  Sum_probs=52.8

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      .|+|+|||.+ +++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+.
T Consensus         2 ~a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   57 (73)
T 2kxd_A            2 GAPPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   57 (73)
T ss_dssp             CCCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCSS
T ss_pred             eEEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEcCCC
Confidence            4899999998 8999999999999999999999999999999999999999998765

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=5.3e-14  Score=110.11  Aligned_cols=57  Identities=16%  Similarity=0.230  Sum_probs=51.6

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||++..++||+|.+||+|.|+. .+++||.|++  +|+.||||+|||+.+..
T Consensus        17 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~-~~~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           17 SDFLAVLSDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             CCEEEESSCSSCTTTSCCSSCTTCEEEEEE-EETTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             CeEEEEccCCCCCCCCcCCCCCCCEEEEEe-cCCCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            346999999999999999999999999998 5789999997  59999999999998754

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.51  E-value=3.4e-14  Score=108.20  Aligned_cols=59  Identities=19%  Similarity=0.437  Sum_probs=53.7

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCC--eeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG--KAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G--~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|++.+  +.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISGP   67 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSSC
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCCC
Confidence            3469999999999999999999999999999889999999954  9999999999988643

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.51  E-value=3e-14  Score=107.71  Aligned_cols=58  Identities=21%  Similarity=0.499  Sum_probs=53.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCC--eeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG--KAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G--~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||++.+++||+|.+||+|.|+...++|||.|++.+  +.||||++||+.+..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR   65 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEEC
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECCC
Confidence            4579999999999999999999999999999899999999954  999999999998753

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.50  E-value=1.9e-14  Score=105.59  Aligned_cols=53  Identities=26%  Similarity=0.498  Sum_probs=49.9

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeecC-CCeeEEEe--CCeeeEecCCCeee
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTN-NGWAEGEC--KGKAGWFPFGYIER  371 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d-~gW~~G~~--~G~~G~fP~~YVe~  371 (384)
                      .|+|+|||.+.+++||+|.+||+|.|+...+ +|||.|++  +|+.||||++||+.
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~~   58 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   58 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEEC
Confidence            5899999999999999999999999999876 79999999  99999999999973

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.50  E-value=3.7e-14  Score=107.82  Aligned_cols=58  Identities=26%  Similarity=0.454  Sum_probs=53.5

Q ss_pred             ceeEeeccCC-CCCCCCcccCCCCEEEEEeecCCCeeEEEeC--CeeeEecCCCeeeccCC
Q 016699          318 FLGEVVHPYQ-AESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIERRDRV  375 (384)
Q Consensus       318 ~~a~alydy~-a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~--G~~G~fP~~YVe~l~~~  375 (384)
                      +.|+|+|||+ +..++||+|.+||+|.|+...++|||.|++.  |+.||||++||+.+.+.
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~~   63 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDT   63 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCSC
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCCc
Confidence            4699999996 9999999999999999999999999999996  99999999999987643

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.50  E-value=2.4e-14  Score=105.29  Aligned_cols=55  Identities=25%  Similarity=0.425  Sum_probs=51.5

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeC--CeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~--G~~G~fP~~YVe~l  372 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|+...++|||.|+..  |+.||||++||+.+
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            36899999999999999999999999999999999999994  89999999999876

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.50  E-value=3.9e-14  Score=108.77  Aligned_cols=60  Identities=20%  Similarity=0.339  Sum_probs=54.7

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccCCCc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+.. ++|||.|+. +|+.||||++||+.+.++++
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   67 (72)
T 2jw4_A            7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKNSARA   67 (72)
T ss_dssp             CEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEECCCCCS
T ss_pred             CeEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEcCCCcc
Confidence            3579999999999999999999999999997 679999996 99999999999999876654

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.50  E-value=5.8e-14  Score=111.63  Aligned_cols=55  Identities=20%  Similarity=0.350  Sum_probs=50.5

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeee
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIER  371 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~  371 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+.. ++|||.|+. +|+.||||++||+.
T Consensus        30 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           30 EEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             CCEEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             CceEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            34679999999999999999999999999997 789999995 89999999999974

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.50  E-value=3.3e-14  Score=108.02  Aligned_cols=57  Identities=28%  Similarity=0.392  Sum_probs=53.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeecc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRD  373 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~  373 (384)
                      ...|+|+|||.+.++++|+|.+||+|.|+...++|||.|++ +|+.||||++||+...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET   63 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECc
Confidence            45799999999999999999999999999999999999999 9999999999998764

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=3.5e-14  Score=110.23  Aligned_cols=58  Identities=24%  Similarity=0.384  Sum_probs=53.0

Q ss_pred             cceeEeeccCCCCC-------CCCcccCCCCEEEEEeecC-CCeeEEEeCCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAES-------DVELTLSVGDYVVVRKVTN-NGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~-------~~ELsf~~GdiI~V~~~~d-~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||++..       +++|+|.+||+|.|+...+ +|||.|+++|+.||||++||+.+..
T Consensus         7 ~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   72 (76)
T 2csi_A            7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVSG   72 (76)
T ss_dssp             SEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             ccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECCC
Confidence            46799999999998       9999999999999999866 4899999999999999999998754

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.49  E-value=4.7e-14  Score=109.33  Aligned_cols=60  Identities=22%  Similarity=0.376  Sum_probs=55.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeC---Cee------eEecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK---GKA------GWFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~---G~~------G~fP~~YVe~l~~~p  376 (384)
                      ...|+|+|||++..++||+|.+||+|.|+...++|||.|++.   |+.      ||||++||+.+.++.
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~~~   75 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSGPS   75 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCCCC
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCCcC
Confidence            357999999999999999999999999999999999999995   998      999999999987654

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.49  E-value=2.7e-14  Score=108.12  Aligned_cols=57  Identities=25%  Similarity=0.349  Sum_probs=53.0

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEE-eCCeeeEecCCCeeecc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRD  373 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~-~~G~~G~fP~~YVe~l~  373 (384)
                      ...|+|+|||.+..+++|+|.+||+|.|+...++|||.|+ .+|+.||||++||+.+.
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             CEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            3579999999999999999999999999999889999999 59999999999999764

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=6.2e-14  Score=106.67  Aligned_cols=59  Identities=27%  Similarity=0.364  Sum_probs=54.2

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|++  +|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct3_A            7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSGP   67 (70)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTCS
T ss_pred             CcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCCC
Confidence            35799999999999999999999999999999999999998  499999999999987643

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=9e-14  Score=109.31  Aligned_cols=59  Identities=19%  Similarity=0.233  Sum_probs=53.4

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCC-CeeEEEe--CCeeeEecCCCeeeccCCC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNN-GWAEGEC--KGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~-gW~~G~~--~G~~G~fP~~YVe~l~~~p  376 (384)
                      ..|+|+|||++..++||+|.+||+|.|+...++ |||.|++  +|+.||||++||+....++
T Consensus        18 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   79 (81)
T 1x6g_A           18 TQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSGPS   79 (81)
T ss_dssp             CEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECCCSC
T ss_pred             CEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEccccc
Confidence            469999999999999999999999999998766 9999986  7999999999999876554

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.49  E-value=3.5e-14  Score=112.52  Aligned_cols=62  Identities=19%  Similarity=0.367  Sum_probs=56.2

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccCCCch
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      ...|+|+|||.+.++++|+|.+||+|.|+...++|||.|++  +|+.||||++||+.+.+++..
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~e   69 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQGE   69 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTCC--
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCcccc
Confidence            45799999999999999999999999999999999999999  999999999999998776544

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.49  E-value=5.1e-14  Score=106.96  Aligned_cols=57  Identities=18%  Similarity=0.251  Sum_probs=52.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+... +|||.|+. +|+.||||++||+.+..
T Consensus         8 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            45799999999999999999999999999985 89999986 89999999999998754

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.49  E-value=3.4e-14  Score=111.35  Aligned_cols=58  Identities=24%  Similarity=0.490  Sum_probs=52.7

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccCC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~~  375 (384)
                      ..|+|+|||++.+++||+|.+||+|.|+...++|||.|++  +|+.||||++||+.+..+
T Consensus         6 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   65 (79)
T 3cqt_A            6 TLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRL   65 (79)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC---
T ss_pred             cEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCcc
Confidence            4699999999999999999999999999999999999999  999999999999998654

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.49  E-value=2.9e-14  Score=109.15  Aligned_cols=55  Identities=22%  Similarity=0.503  Sum_probs=50.3

Q ss_pred             ceeEeeccCCCCCCC-CcccCCCCEEEEEeecC-----CCeeEEEe-CCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDV-ELTLSVGDYVVVRKVTN-----NGWAEGEC-KGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~-ELsf~~GdiI~V~~~~d-----~gW~~G~~-~G~~G~fP~~YVe~l  372 (384)
                      ..|+|+|+|.+++++ ||+|.+||+|.|++..+     +|||.|++ +|+.||||+|||+.+
T Consensus         8 ~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            8 HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             -CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             eEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            569999999999999 99999999999999875     49999999 899999999999864

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.49  E-value=6.7e-14  Score=108.62  Aligned_cols=60  Identities=30%  Similarity=0.491  Sum_probs=54.6

Q ss_pred             cceeEeeccCCCC-CCCCcccCCCCEEEEEeec-CCCeeEEE-eCCeeeEecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAE-SDVELTLSVGDYVVVRKVT-NNGWAEGE-CKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~-~~~ELsf~~GdiI~V~~~~-d~gW~~G~-~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ...|+|+|||.+. +++||+|.+||+|.|+... ++|||.|+ .+|+.||||.+||+.+...+
T Consensus         9 ~~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~~   71 (77)
T 2enm_A            9 ATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDG   71 (77)
T ss_dssp             CEEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECCCC
T ss_pred             CcEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCCCC
Confidence            4679999999999 9999999999999999985 79999999 69999999999999986543

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=8.4e-14  Score=110.33  Aligned_cols=57  Identities=18%  Similarity=0.290  Sum_probs=52.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeecc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRD  373 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~  373 (384)
                      ...|+|+|||++.+++||+|.+||+|.|+...++|||.|+. +|+.||||++||+.+.
T Consensus        19 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~   76 (85)
T 2yuq_A           19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS   76 (85)
T ss_dssp             SCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECC
T ss_pred             CeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEcc
Confidence            35799999999999999999999999999999899999975 9999999999999864

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.49  E-value=9.8e-14  Score=108.46  Aligned_cols=58  Identities=26%  Similarity=0.548  Sum_probs=53.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeC-----CeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-----GKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~-----G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|++.     |+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~   69 (80)
T 1ue9_A            7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGP   69 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCS
T ss_pred             CeEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCC
Confidence            357999999999999999999999999999989999999985     4999999999999864

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.48  E-value=4.8e-14  Score=113.60  Aligned_cols=64  Identities=20%  Similarity=0.373  Sum_probs=56.3

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecC----CCeeEEEeCCe-eeEecCCCeeeccCCCchh
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN----NGWAEGECKGK-AGWFPFGYIERRDRVLASK  379 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d----~gW~~G~~~G~-~G~fP~~YVe~l~~~pa~k  379 (384)
                      ....|+|||||.+..++||+|.+||+|.|+...+    +|||.|++.|. .||||.+||+.+...+..+
T Consensus        16 ~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~~~~~~   84 (93)
T 1wxu_A           16 DHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRRGRK   84 (93)
T ss_dssp             CBBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCCBCCST
T ss_pred             CCEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCCccccC
Confidence            4567999999999999999999999999999876    69999999777 9999999999987554443

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.48  E-value=3.2e-14  Score=105.04  Aligned_cols=55  Identities=24%  Similarity=0.499  Sum_probs=49.6

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEeC-CeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECK-GKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~~-G~~G~fP~~YVe~l  372 (384)
                      ..++|+|||.+..++||+|.+||+|.|+... ++|||.|++. |+.||||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            4699999999999999999999999999875 4599999996 99999999999864

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.48  E-value=1.6e-14  Score=109.13  Aligned_cols=58  Identities=19%  Similarity=0.327  Sum_probs=53.3

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEE-eCCeeeEecCCCeeecc
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRD  373 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~-~~G~~G~fP~~YVe~l~  373 (384)
                      ....|+|+|||.+..+++|+|.+||+|.|+...++|||.|+ .+|+.||||++||+.+.
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A            7 ELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             CCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             CCeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcC
Confidence            34579999999999999999999999999999899999999 59999999999998764

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.47  E-value=3.6e-14  Score=104.94  Aligned_cols=56  Identities=14%  Similarity=0.239  Sum_probs=51.9

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~  374 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|+.. ++|||.|+. +|+.||||++||+.+.+
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            368999999999999999999999999999 899999985 89999999999998754

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.47  E-value=5e-14  Score=113.06  Aligned_cols=55  Identities=36%  Similarity=0.567  Sum_probs=51.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec-----CCCeeEEEe-CCeeeEecCCCeee
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-----NNGWAEGEC-KGKAGWFPFGYIER  371 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-----d~gW~~G~~-~G~~G~fP~~YVe~  371 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+...     ++|||.|++ +|+.||||++||+.
T Consensus        29 ~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             CcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            45799999999999999999999999999984     899999999 99999999999973

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.47  E-value=3.9e-14  Score=109.39  Aligned_cols=57  Identities=28%  Similarity=0.486  Sum_probs=52.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEeCCeeeEecCCCeeecc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ...|+|+|||++..++||+|.+||+|.|+... +.|||.|+++|+.||||++||+.+.
T Consensus         9 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A            9 SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             -CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             CeEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEcC
Confidence            35699999999999999999999999999987 6799999999999999999999764

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.47  E-value=7.7e-14  Score=106.81  Aligned_cols=56  Identities=23%  Similarity=0.386  Sum_probs=51.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe---CCee---eEecCCCeeecc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKA---GWFPFGYIERRD  373 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~---~G~~---G~fP~~YVe~l~  373 (384)
                      ...|+|+|||.+..++||+|.+||+|.| ...++|||.|++   +|+.   ||||++||+.+.
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            3579999999999999999999999999 888999999999   7999   999999998764

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.46  E-value=6.1e-14  Score=114.06  Aligned_cols=60  Identities=25%  Similarity=0.422  Sum_probs=55.5

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...+
T Consensus        34 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   93 (98)
T 1udl_A           34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCCS
T ss_pred             ceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEcCCCC
Confidence            467999999999999999999999999999988999999999999999999999886543

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.1e-13  Score=104.94  Aligned_cols=56  Identities=16%  Similarity=0.287  Sum_probs=51.7

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~  374 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|+.. ++|||.|+. +|+.||||++||+.+.+
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            8 KYVKILYDFTARNANELSVLKDEVLEVLED-GRQWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             CCEECSSCBCCSSSSBCCBCTTCEEEEEEC-SSSEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEc-CCCEEEEEECCCCEEEEEHHHeEECCC
Confidence            469999999999999999999999999998 489999996 99999999999998764

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.46  E-value=3.1e-14  Score=114.31  Aligned_cols=61  Identities=30%  Similarity=0.437  Sum_probs=52.6

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEee---------------cCCCeeEEEe--CCeeeEecCCCeeeccCCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV---------------TNNGWAEGEC--KGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~---------------~d~gW~~G~~--~G~~G~fP~~YVe~l~~~p  376 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+..               .+.|||.|++  +|+.||||.|||+.+.+..
T Consensus        10 ~~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~~~   87 (90)
T 3o5z_A           10 EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGPVA   87 (90)
T ss_dssp             SEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEEEC
T ss_pred             CCcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecccc
Confidence            45679999999999999999999999999842               2338999987  6999999999999886543

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=111.47  Aligned_cols=59  Identities=32%  Similarity=0.616  Sum_probs=53.4

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEee--cC--CCeeEEE--eCCeeeEecCCCeeeccC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TN--NGWAEGE--CKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~--~d--~gW~~G~--~~G~~G~fP~~YVe~l~~  374 (384)
                      ....|+|+|+|.+.+++||+|.+||+|.|+..  .+  +|||.|+  ++|+.||||.|||+.+..
T Consensus        15 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   79 (94)
T 2e5k_A           15 NHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADE   79 (94)
T ss_dssp             CCEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCS
T ss_pred             CCeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEccc
Confidence            34679999999999999999999999999987  34  8999999  699999999999998753

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.45  E-value=4.6e-13  Score=110.60  Aligned_cols=60  Identities=23%  Similarity=0.479  Sum_probs=55.4

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|++  +|+.||||++||+.+..+
T Consensus        26 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   87 (109)
T 2yt6_A           26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSI   87 (109)
T ss_dssp             SCCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESSSC
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECCcc
Confidence            456799999999999999999999999999998999999996  899999999999988654

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.7e-13  Score=104.43  Aligned_cols=58  Identities=16%  Similarity=0.358  Sum_probs=52.4

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEeC-CeeeEecCCCeeeccCC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECK-GKAGWFPFGYIERRDRV  375 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~~-G~~G~fP~~YVe~l~~~  375 (384)
                      .+|+|+|||.+..++||+|.+||+|.|+... ++|||.|++. |+.||||.+||+.+...
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct4_A            8 GHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSGP   67 (70)
T ss_dssp             CEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCCC
T ss_pred             CEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCCC
Confidence            4699999999999999999999999999986 4679999996 99999999999987543

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.45  E-value=1.2e-14  Score=111.24  Aligned_cols=60  Identities=25%  Similarity=0.447  Sum_probs=54.6

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeee-EecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAG-WFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G-~fP~~YVe~l~~~p  376 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.| |||++||+.+...+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~~~~~   66 (71)
T 1hsq_A            6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPE   66 (71)
T ss_dssp             SSCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSCSCCC
T ss_pred             CeEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEECCCcc
Confidence            3468999999999999999999999999999999999999988887 99999999886544

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.45  E-value=5.2e-14  Score=116.94  Aligned_cols=58  Identities=26%  Similarity=0.399  Sum_probs=53.0

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCee---eEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA---GWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~---G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.   ||||+|||+.+.+
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~   65 (108)
T 2rqv_A            5 SLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDI   65 (108)
T ss_dssp             CCCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCS
T ss_pred             CeEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecC
Confidence            346999999999999999999999999999999999999997666   9999999998754

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A

Probab=99.45  E-value=6.5e-12  Score=119.27  Aligned_cols=199  Identities=12%  Similarity=0.103  Sum_probs=146.6

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC--CCCCCChhHHHHHHHHHHHHHHHHHHH
Q 016699           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN--TCTSGNTLSKAALSYGRARAQMEKERG  126 (384)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~--~~~~~~~~g~al~~~g~a~~~l~~~~~  126 (384)
                      .+..+=...+.++.|.++++|.+..++..+..-......+++.+..++...  +++++..++.+|.+||++.+.|...+.
T Consensus        22 ~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~~~  101 (265)
T 2q12_A           22 LLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHA  101 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444456667779999999999888777666666669999999999852  235788899999999999999999999


Q ss_pred             HHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHH
Q 016699          127 NLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDA  206 (384)
Q Consensus       127 ~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~  206 (384)
                      .++..+...|++||++|+.+ |++.++..+|+||+.+.++++           -.--+... .|.+.      .+..++.
T Consensus       102 ~l~~~~~~~~~~PL~~f~~~-dlk~~ke~kk~fdk~~~~yd~-----------al~k~~~~-~k~k~------~e~~l~E  162 (265)
T 2q12_A          102 VLSTQLADAMMFPITQFKER-DLKEILTLKEVFQIASNDHDA-----------AINRYSRL-SKKRE------NDKVKYE  162 (265)
T ss_dssp             HHHHHHHHHTHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-HTSCC------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----------HHHHHhcC-CCCCc------chhhHHH
Confidence            99999999999999999999 999999888999999999997           22122111 12111      1224566


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 016699          207 AEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD-QLE  266 (384)
Q Consensus       207 ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~-qL~  266 (384)
                      +..++...+..+.....+-...|..+.....--.++.|..|++++.+|++++++.+. ++.
T Consensus       163 a~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~  223 (265)
T 2q12_A          163 VTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLE  223 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777665555455555555554332223499999999999999999999874 443

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.45  E-value=7.7e-14  Score=115.92  Aligned_cols=59  Identities=20%  Similarity=0.340  Sum_probs=52.5

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEee-cCCC--eeEEEeC--------CeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNG--WAEGECK--------GKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~-~d~g--W~~G~~~--------G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||.+.+++||+|++||+|.|+.. .+.|  ||.|++.        |+.||||+|||+.+..+
T Consensus        22 ~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~~   91 (108)
T 1i1j_A           22 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   91 (108)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             eeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEcccc
Confidence            4679999999999999999999999999998 3444  9999986        99999999999987644

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.44  E-value=8.9e-14  Score=116.78  Aligned_cols=58  Identities=33%  Similarity=0.443  Sum_probs=52.6

Q ss_pred             CCcceeEeeccCCCCCCCCcccCCCCEEEEEe-----ecCCCeeEEEeC----------CeeeEecCCCeeec
Q 016699          315 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRK-----VTNNGWAEGECK----------GKAGWFPFGYIERR  372 (384)
Q Consensus       315 ~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~-----~~d~gW~~G~~~----------G~~G~fP~~YVe~l  372 (384)
                      ....+|+|+|||.+.+++||+|.+||+|.|+.     ..++|||.|++.          |+.||||++||+.+
T Consensus        42 ~~~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           42 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             TCCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             CcceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            34567999999999999999999999999999     688999999763          88999999999876

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.43  E-value=9.1e-14  Score=105.98  Aligned_cols=58  Identities=21%  Similarity=0.497  Sum_probs=51.0

Q ss_pred             cceeEeeccCCCCCCC--CcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDV--ELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~--ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|+|.+..++  +|+|.+||+|.|+.. ++|||.|+. +|+.||||++||+.+...
T Consensus         5 ~~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   65 (70)
T 2vkn_A            5 IYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLIDGP   65 (70)
T ss_dssp             EEEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEEEEE
T ss_pred             CEEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEECCCC
Confidence            4579999999998655  999999999999886 789999975 999999999999987543

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.42  E-value=2.1e-13  Score=104.83  Aligned_cols=58  Identities=33%  Similarity=0.558  Sum_probs=52.5

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe---CCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~---~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||.+.++++|+|.+||+|.|++.. +|||.|++   +|+.||||++||+.+...
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~~~   71 (74)
T 2m0y_A           11 EKYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKEAI   71 (74)
T ss_dssp             CSCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECCCC
T ss_pred             CeEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEeccc
Confidence            35699999999999999999999999999985 89999998   799999999999987543

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.41  E-value=3.3e-13  Score=117.34  Aligned_cols=59  Identities=29%  Similarity=0.575  Sum_probs=54.2

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+... ++|||.|+++|+.||||++||+.+..
T Consensus         4 ~~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A            4 TFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             CCCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSC
T ss_pred             cCeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEccc
Confidence            345799999999999999999999999999984 89999999999999999999998753

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.41  E-value=2.8e-13  Score=108.28  Aligned_cols=57  Identities=25%  Similarity=0.413  Sum_probs=52.1

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccCC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~~  375 (384)
                      ..|+|+|||.+.++++|+|.+||+|.|+.. ++|||.|++  +|+.||||++||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   62 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSG   62 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC-
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCCC
Confidence            468999999999999999999999999998 578999998  899999999999988654

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.40  E-value=8.8e-14  Score=109.66  Aligned_cols=58  Identities=29%  Similarity=0.505  Sum_probs=51.1

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEee---------------cCCCeeEEEe--CCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV---------------TNNGWAEGEC--KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~---------------~d~gW~~G~~--~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+..               .++|||.|.+  +|+.||||.+||+.+.+
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            4579999999999999999999999999954               3449999976  79999999999998754

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.39  E-value=3.5e-13  Score=113.89  Aligned_cols=59  Identities=22%  Similarity=0.363  Sum_probs=53.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe---CCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~---~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|++   .|+.||||+|||+.+.+.
T Consensus         3 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~   64 (120)
T 2kym_A            3 PLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLM   64 (120)
T ss_dssp             CCEEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECSS
T ss_pred             CEEEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccCC
Confidence            45799999999999999999999999999999999999985   688999999999988643

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.39  E-value=6.4e-14  Score=108.89  Aligned_cols=55  Identities=20%  Similarity=0.283  Sum_probs=51.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeee
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIER  371 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~  371 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|++ +|+.||||+|||+.
T Consensus        20 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           20 ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   75 (77)
T ss_dssp             SSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCC
T ss_pred             ceEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEE
Confidence            35699999999999999999999999999998899999996 99999999999975

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.39  E-value=9.3e-13  Score=121.69  Aligned_cols=57  Identities=33%  Similarity=0.471  Sum_probs=52.4

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEe-----ecCCCeeEEEe----------CCeeeEecCCCeeec
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRK-----VTNNGWAEGEC----------KGKAGWFPFGYIERR  372 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~-----~~d~gW~~G~~----------~G~~G~fP~~YVe~l  372 (384)
                      ....|+|||+|.+.+.+||+|.+||+|.|+.     ..++|||.|++          +|+.||||.|||+.+
T Consensus       141 ~~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          141 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             CCEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             cceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            4568999999999999999999999999999     67899999996          499999999999876

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.34  E-value=1.8e-12  Score=100.80  Aligned_cols=53  Identities=25%  Similarity=0.380  Sum_probs=44.6

Q ss_pred             eEeeccCCCC---CCCCcccCCCCEEEEEeec-CCCeeEEEe--CCeeeEecCCCeeec
Q 016699          320 GEVVHPYQAE---SDVELTLSVGDYVVVRKVT-NNGWAEGEC--KGKAGWFPFGYIERR  372 (384)
Q Consensus       320 a~alydy~a~---~~~ELsf~~GdiI~V~~~~-d~gW~~G~~--~G~~G~fP~~YVe~l  372 (384)
                      ++++|+|.+.   +++||+|.+||+|.|+... ++|||.|+.  +|+.||||+|||+.+
T Consensus        18 ~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~   76 (78)
T 1k1z_A           18 FQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   76 (78)
T ss_dssp             CSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEES
T ss_pred             EEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            4555666553   2599999999999999995 899999994  899999999999875

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.32  E-value=1.8e-12  Score=98.61  Aligned_cols=49  Identities=29%  Similarity=0.531  Sum_probs=41.0

Q ss_pred             cCCCCCCCCcccCCCCEEEEEee-cCCCeeEEE--eCCeeeEecCCCeeecc
Q 016699          325 PYQAESDVELTLSVGDYVVVRKV-TNNGWAEGE--CKGKAGWFPFGYIERRD  373 (384)
Q Consensus       325 dy~a~~~~ELsf~~GdiI~V~~~-~d~gW~~G~--~~G~~G~fP~~YVe~l~  373 (384)
                      +|.+.+++||+|.+||+|.|+.. .++|||.|+  ++|+.||||+|||+.+.
T Consensus        18 ~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C           18 PPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             CCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEECC
Confidence            33344455999999999999999 688999995  49999999999998753

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.31  E-value=3.1e-12  Score=124.16  Aligned_cols=60  Identities=37%  Similarity=0.586  Sum_probs=55.1

Q ss_pred             CcceeEeeccCC--CCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQ--AESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~--a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.  +.+++||+|.+||+|.|+...++|||.|+++|+.||||+|||+.+...
T Consensus       236 ~~~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~  297 (304)
T 2eyz_A          236 GPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQ  297 (304)
T ss_dssp             CCCCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTTSCCCSSC
T ss_pred             CCEEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHHEEECCCC
Confidence            445799999999  779999999999999999999999999999999999999999998654

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.30  E-value=2.3e-12  Score=122.53  Aligned_cols=59  Identities=27%  Similarity=0.436  Sum_probs=55.2

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|++..++|||.|+.+|+.||||++||+.+...+
T Consensus         3 ~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   61 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMD   61 (283)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEETTEEEEEEGGGEEEGGGSC
T ss_pred             eEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEECCCCCcCCCccccccCccc
Confidence            57999999999999999999999999999999999999999999999999999876543

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.30  E-value=1.4e-12  Score=133.08  Aligned_cols=59  Identities=27%  Similarity=0.471  Sum_probs=55.4

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+
T Consensus        29 ~~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   87 (466)
T 2pz1_A           29 SVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVN   87 (466)
T ss_dssp             CCEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSC
T ss_pred             CccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeeeccC
Confidence            45789999999999999999999999999999999999999999999999999998754

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.29  E-value=1.8e-12  Score=117.81  Aligned_cols=60  Identities=30%  Similarity=0.479  Sum_probs=55.8

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+.+|+.||||++||+.+...
T Consensus        10 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   69 (193)
T 1ng2_A           10 ILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSP   69 (193)
T ss_dssp             CCEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSSCS
T ss_pred             cCcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCeeeEechheEEeeccc
Confidence            456799999999999999999999999999999999999999999999999999987643

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.29  E-value=6.1e-12  Score=115.53  Aligned_cols=58  Identities=24%  Similarity=0.555  Sum_probs=54.7

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.
T Consensus       157 ~~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~  214 (217)
T 1gri_A          157 QPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVN  214 (217)
T ss_dssp             CCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEEEC
T ss_pred             CceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEECCeEEEEeHHHeEECC
Confidence            3467999999999999999999999999999999999999999999999999999875

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.27  E-value=3.4e-12  Score=132.25  Aligned_cols=60  Identities=18%  Similarity=0.451  Sum_probs=53.5

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||++.+++||+|.+||+|.|++..++|||.|++  +|+.||||+|||+....+
T Consensus        84 ~~~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~l  145 (535)
T 2h8h_A           84 GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI  145 (535)
T ss_dssp             ---CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             CCcEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcccccc
Confidence            345799999999999999999999999999999999999999  899999999999986543

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.27  E-value=4.3e-12  Score=113.22  Aligned_cols=56  Identities=20%  Similarity=0.340  Sum_probs=52.3

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeee
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIER  371 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~  371 (384)
                      ....++|+|||.+.+++||+|.+||+|.|++..++|||.|+. +|+.||||+|||+.
T Consensus       117 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          117 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             cccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            445799999999999999999999999999999999999995 99999999999985

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.26  E-value=4.9e-10  Score=111.72  Aligned_cols=194  Identities=10%  Similarity=0.091  Sum_probs=135.2

Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC-C-CCCCChhHHHHHHHHHHHHHHHHHHHH
Q 016699           50 LERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN-T-CTSGNTLSKAALSYGRARAQMEKERGN  127 (384)
Q Consensus        50 ~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~-~-~~~~~~~g~al~~~g~a~~~l~~~~~~  127 (384)
                      +..+=...+.++.|.++|+|.+..++..+..-......+++.+..|+.+. | +..+..++.+|.+||++.+.|+..+..
T Consensus        23 l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~~~~~  102 (385)
T 2q13_A           23 LGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAV  102 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333455667779999999998877665554445568999999999863 2 236677899999999999999999999


Q ss_pred             HHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHH
Q 016699          128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAA  207 (384)
Q Consensus       128 ~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~a  207 (384)
                      |..++...+++||++|+.+ |++.++..+++||+.+.++++-+.-..+            ..|.+.    +  +..+..|
T Consensus       103 l~~~~~~~~~~PL~~f~~~-di~~~ke~kk~fek~~~~yd~al~k~~~------------~~k~k~----~--e~~~~ea  163 (385)
T 2q13_A          103 LSTQLADAMMFPITQFKER-DLKEILTLKEVFQIASNDHDAAINRYSR------------LSKKRE----N--DKVKYEV  163 (385)
T ss_dssp             HHHHHHHHTHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCSSSC----C--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc------------CCCCCc----h--hhHHHHH
Confidence            9999999999999999999 9999998889999999999971111111            111111    1  1122344


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          208 EVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL  262 (384)
Q Consensus       208 e~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL  262 (384)
                      +.++.+.+..+.....+-...|..+.....--.|+.|..|+.++.+|+.++.+.+
T Consensus       164 ~~~l~~~rk~f~~~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~  218 (385)
T 2q13_A          164 TEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENL  218 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444333323333334444333223348899999999999999999875

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.26  E-value=5.7e-12  Score=124.16  Aligned_cols=62  Identities=23%  Similarity=0.491  Sum_probs=57.2

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCc
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ..+.|+|+|||++.+++||+|.+||+|.|+...++|||.|+++|+.||||+|||+.+.+.+.
T Consensus       173 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~  234 (341)
T 2dyb_A          173 AAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPE  234 (341)
T ss_dssp             CCCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCCC
T ss_pred             CCcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEcCCCCc
Confidence            34579999999999999999999999999999999999999999999999999999876554

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.26  E-value=1.2e-11  Score=112.48  Aligned_cols=58  Identities=22%  Similarity=0.291  Sum_probs=54.5

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+..
T Consensus        81 ~~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A           81 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             ceeeeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECCC
Confidence            4578999999999999999999999999999999999999999999999999998764

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.24  E-value=7e-12  Score=113.38  Aligned_cols=57  Identities=25%  Similarity=0.439  Sum_probs=52.2

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe---CCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~---~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|+|.+..++||+|.+||+|.|++..+ |||.|++   +|+.||||+|||+.+..
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~   76 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKEV   76 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEECC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEecc
Confidence            457999999999999999999999999999876 6999998   78999999999998754

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.24  E-value=9.2e-12  Score=111.18  Aligned_cols=57  Identities=19%  Similarity=0.510  Sum_probs=51.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||++.+++||+|.+||+|.|+.. +++||.|+.  +|+.||||++||+....
T Consensus        12 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~~   70 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKANS   70 (175)
T ss_dssp             -CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             CcEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeecccccccccc
Confidence            3579999999999999999999999999998 789999998  89999999999997543

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.21  E-value=3.6e-12  Score=118.94  Aligned_cols=61  Identities=20%  Similarity=0.416  Sum_probs=55.8

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEE-eCCeeeEecCCCeeeccCCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~-~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+ .+|+.||||+|||+.+.+.+
T Consensus       135 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~  196 (230)
T 2dvj_A          135 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS  196 (230)
T ss_dssp             CCCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCSSC
T ss_pred             cceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcCCCC
Confidence            34579999999999999999999999999999999999999 69999999999999987543

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.16  E-value=3.9e-11  Score=89.58  Aligned_cols=46  Identities=26%  Similarity=0.517  Sum_probs=42.9

Q ss_pred             CCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          330 SDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       330 ~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      +++||+|.+||+|.|+...++|||.|+.+|+.||||++||+.+.+.
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   47 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   47 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSCS
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEcCCC
Confidence            5789999999999999999999999999999999999999988654

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.76  E-value=3.7e-12  Score=123.59  Aligned_cols=60  Identities=32%  Similarity=0.493  Sum_probs=53.8

Q ss_pred             CcceeEeeccCCCC--CCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAE--SDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~--~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.++  +++||+|.+||+|.|+...++|||.|+++|+.||||+|||+.+...
T Consensus       236 ~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~  297 (303)
T 2lqn_A          236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ  297 (303)
Confidence            35679999999754  4789999999999999999999999999999999999999998653

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.14  E-value=8.2e-11  Score=114.11  Aligned_cols=60  Identities=20%  Similarity=0.434  Sum_probs=55.3

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEE-eCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~-~~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+ .+|+.||||++||+.+...
T Consensus       133 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~  193 (304)
T 2eyz_A          133 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA  193 (304)
T ss_dssp             CCCEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEECCCS
T ss_pred             cceeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccccCC
Confidence            45679999999999999999999999999999999999999 5999999999999988654

>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}

Probab=99.13  E-value=2.3e-08  Score=93.75  Aligned_cols=216  Identities=14%  Similarity=0.184  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhh-hhhhhHHHHhhhhcccccCCCcccchhh
Q 016699            8 ATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTR-AGKHFQRDIVRGVEGYIVTGSKQVEIGT   86 (384)
Q Consensus         8 ~~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~-~~k~~~~~i~r~~e~~~~~~~~~~e~~~   86 (384)
                      |.-+...+.|..|.|.-++|.+-. ..|...         ..+|+-|.... .++.+++++....+.+...-..+    .
T Consensus         6 ~k~~~K~~~R~~q~lkqk~G~~e~-T~D~~F---------e~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~~~q----~   71 (237)
T 4avm_A            6 AKQVQKKFSRAQEKVLQKLGKAVE-TKDERF---------EQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESS----K   71 (237)
T ss_dssp             -CHHHHHHHHHHHHHHHHTTSSCC-CCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred             HHHHHHHHhhhhHHHHHHcCCCcc-cccHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence            445777899999999999994432 244433         22333333332 23455555555555433222222    2


Q ss_pred             HHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHH------H
Q 016699           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQR------Y  159 (384)
Q Consensus        87 ~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~------y  159 (384)
                      .+++++...-....  ++.      -.+..+.+.+...+.+|...+...++.||..++..  +++++ ..+||      |
T Consensus        72 ~~~~~l~~~y~~~~--~~~------~~~~~~~~~~~~l~~~~~~~l~~~vi~Pl~~~~~~--~~~i~k~I~KR~~kllDy  141 (237)
T 4avm_A           72 RVSETLQEIYSSEW--DGH------EELKAIVWNNDLLWEDYEEKLADQAVRTMEIYVAQ--FSEIKERIAKRGRKLVDY  141 (237)
T ss_dssp             HHHHHHHHHSCTTS--TTH------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHT--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcc--CcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHH
Confidence            46777765443222  211      23444455566789999999999999999999996  89998 44442      4


Q ss_pred             HHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016699          160 DRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRL  239 (384)
Q Consensus       160 ~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~  239 (384)
                      |+.|..++.                  .+.|..      ..+.++..+|.+++++++.+..|+......++.+..-+..+
T Consensus       142 d~~~~~~~k------------------l~~k~~------kd~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l~~~~~~~  197 (237)
T 4avm_A          142 DSARHHLEA------------------VQNAKK------KDEAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGC  197 (237)
T ss_dssp             HHHHHHHHH------------------HHTCSS------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHH------------------HHhccC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555444                  222211      13569999999999999999999999999999887777788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          240 TLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       240 ~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      ...+|.+|+..|.+||..+..+...|...|..
T Consensus       198 ~~~~~~~~i~~q~~f~~~~~~~~~~l~~~~~~  229 (237)
T 4avm_A          198 YVTIFQNISNLRDVFYREMSKLNHNLYEVMSK  229 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            88899999999999999999999999987765

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.10  E-value=7.7e-12  Score=121.45  Aligned_cols=58  Identities=22%  Similarity=0.283  Sum_probs=0.0

Q ss_pred             cceeEeeccC--CCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPY--QAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy--~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||  .+.+++||+|.+||+|.|+...++|||.|+++|+.||||+|||+.+.+
T Consensus       247 ~~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~~~~  306 (308)
T 3qwy_A          247 PAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAV  306 (308)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ccccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEECCeeEEechHHeEEecC
Confidence            4578999999  455669999999999999999899999999999999999999998864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.07  E-value=1.6e-10  Score=116.77  Aligned_cols=59  Identities=20%  Similarity=0.452  Sum_probs=53.7

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEee-cCCCeeEEEeC-CeeeEecCCCeeeccCCC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGECK-GKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~-~d~gW~~G~~~-G~~G~fP~~YVe~l~~~p  376 (384)
                      ..|+|+|||++.+++||+|.+||+|.|+.. .++|||.|+.. |+.||||+|||+....++
T Consensus        12 ~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~~~   72 (450)
T 1k9a_A           12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK   72 (450)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCCC
T ss_pred             CEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccccc
Confidence            469999999999999999999999999998 67899999995 999999999999876543

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.07  E-value=5.2e-11  Score=92.46  Aligned_cols=48  Identities=27%  Similarity=0.498  Sum_probs=44.5

Q ss_pred             CCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          328 AESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       328 a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      +.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+.
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   49 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   49 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEECCCS
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEEcCCC
Confidence            578899999999999999999999999999999999999999988654

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.07  E-value=1.3e-10  Score=112.80  Aligned_cols=56  Identities=20%  Similarity=0.376  Sum_probs=52.6

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l  372 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|++ +|+.||||++||+.+
T Consensus       147 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~  203 (308)
T 3qwy_A          147 IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ  203 (308)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEEC
T ss_pred             ceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEecccccccc
Confidence            45799999999999999999999999999999999999997 999999999999944

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.05  E-value=1.3e-10  Score=106.74  Aligned_cols=55  Identities=29%  Similarity=0.505  Sum_probs=47.2

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEeCCeeeEecCCCeeecc
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      .|+|+|||.+.+++||+|.+||+|.|+... ++|||.|+.+|+.||||.+||+...
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   57 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   57 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEECCC
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccCCccceECCccccccc
Confidence            589999999999999999999999999876 6799999999999999999998754

>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A

Probab=99.05  E-value=2.9e-08  Score=93.90  Aligned_cols=173  Identities=11%  Similarity=0.087  Sum_probs=113.4

Q ss_pred             HHHHHHHHhhccCCCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHH----HH
Q 016699           87 KLSEDSRKYGSDNTCT-SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRY----DR  161 (384)
Q Consensus        87 ~l~~~m~~~g~e~~~~-~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y----~~  161 (384)
                      .+-+++.+-|.-...+ ..-++|.+|+++.+.++.|+...+++...+...||.||...++. |.|.+....|+|    .+
T Consensus        54 ~f~dal~kia~~A~~s~gs~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL~~kie~-d~K~v~~~~K~~~~e~k~  132 (253)
T 2ykt_A           54 GYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVEL-DSRYLSAALKKYQTEQRS  132 (253)
T ss_dssp             HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Confidence            4555555555521111 22579999999999999999999999999999999999999999 899999777777    44


Q ss_pred             HHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016699          162 MRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTL  241 (384)
Q Consensus       162 ~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l  241 (384)
                      .+.+++.           ..-|++|.++|.+..........++..+.+.+.+-...+.....++.+....-|+.+..+.+
T Consensus       133 ~~~~l~K-----------~~~e~~kl~KK~k~gk~~~~~~~~~~~~~e~v~~~~~~le~~~~~~lr~aL~EERrRycflv  201 (253)
T 2ykt_A          133 KGDALDK-----------CQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLV  201 (253)
T ss_dssp             HHHHHHH-----------HHHHHHHHHHC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhHHHH-----------HHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555           55577665555432111111112444444333333333333333333332223555666667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          242 QRLIAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       242 ~~L~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      .+++.|++.+..||.+...+|++.-..+..
T Consensus       202 ~~~~~v~~~~~~~h~~~~~~L~~~l~~w~~  231 (253)
T 2ykt_A          202 EKQCAVAKNSAAYHSKGKELLAQKLPLWQQ  231 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            888999999999999998888877776765

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=99.02  E-value=2.3e-10  Score=118.75  Aligned_cols=57  Identities=18%  Similarity=0.268  Sum_probs=53.3

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEE--eCCeeeEecCCCeeeccC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~--~~G~~G~fP~~YVe~l~~  374 (384)
                      ..++|+|||.+++++||+|.+||+|.|+...++|||.|+  ++|+.|+||+|||+.+..
T Consensus       443 ~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~  501 (526)
T 2de0_X          443 HNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIE  501 (526)
T ss_dssp             CEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred             cceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEccc
Confidence            569999999999999999999999999999999999999  599999999999998753

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.59  E-value=2.8e-11  Score=117.39  Aligned_cols=60  Identities=17%  Similarity=0.376  Sum_probs=55.3

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|++ +|+.||||++||+.+.+.
T Consensus       124 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~  184 (303)
T 2lqn_A          124 NLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRS  184 (303)
Confidence            456799999999999999999999999999999999999996 899999999999988654

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.02  E-value=2e-10  Score=116.12  Aligned_cols=58  Identities=17%  Similarity=0.435  Sum_probs=53.8

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccCC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~~  375 (384)
                      ..|+|+|||++.+++||+|.+||+|.|++..++|||.|+.  +|+.||||+|||+....+
T Consensus         3 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~l   62 (452)
T 1fmk_A            3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI   62 (452)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             eEEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccccccc
Confidence            3689999999999999999999999999999999999999  899999999999986544

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.01  E-value=2.9e-10  Score=116.51  Aligned_cols=59  Identities=25%  Similarity=0.440  Sum_probs=53.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ...|+|+|||++.+++||+|.+||+|.|+... ++|||.|+..|..||||+|||+.+..+
T Consensus        43 ~~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~~l  102 (495)
T 1opk_A           43 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSL  102 (495)
T ss_dssp             -CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESSSG
T ss_pred             CcEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceeccccccccccc
Confidence            45799999999999999999999999999986 789999999999999999999976543

>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}

Probab=98.98  E-value=1.1e-08  Score=94.37  Aligned_cols=141  Identities=11%  Similarity=0.111  Sum_probs=96.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHH-HHHHHHhhhhhccCCcccHHH
Q 016699          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRM-RQEAEAQLVISSSLKPSQAIE  183 (384)
Q Consensus       105 ~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~-r~ele~~~~~~~~l~~~rrld  183 (384)
                      -++|.+|+++.++++.|....+.+.+.++..+|.||...++. |.|.+....|+|... |...++       |++|+. +
T Consensus        71 keLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~-D~k~i~~~~K~y~~e~k~~~~~-------leK~~~-e  141 (222)
T 3ok8_A           71 QILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKL-DMQFIKDSCQHYEIEYRHRAAN-------LEKCMS-E  141 (222)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-H
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHH-------HHHHHH-H
Confidence            369999999999999999999999999999999999999999 999999888888443 333333       333333 6


Q ss_pred             HHHHhhhhccCCCCCch-HHhHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          184 VSKRQAKVRETPGNPDL-ALKLDAAEVKLHDLK--SNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQ  260 (384)
Q Consensus       184 ~kkr~~k~~e~~~~~~~-~~kl~~ae~k~~e~~--~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~  260 (384)
                      ++|+.+|..   .++.. ...+..-+.+|+.-.  +.-+.|..|..+.++.||.|         |+|+.....||.+...
T Consensus       142 lkK~~rksq---k~~~k~~e~v~~~q~el~~f~~~s~r~Al~EErRRYcFL~ekh---------c~~~~~~~~~h~k~~~  209 (222)
T 3ok8_A          142 LWRMERKRD---KNAREMKESVNRLHAQMQAFVSESKRAAELEEKRRYRFLAEKH---------LLLSNTFLQFLGRARG  209 (222)
T ss_dssp             HHHHHHTTC---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhc---cChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence            666554422   22211 111111112222211  12345556666666666665         9999999999999999


Q ss_pred             HHHHHH
Q 016699          261 ILDQLE  266 (384)
Q Consensus       261 iL~qL~  266 (384)
                      +|.+--
T Consensus       210 ~L~~kl  215 (222)
T 3ok8_A          210 MLQNRV  215 (222)
T ss_dssp             HHHHHH
T ss_pred             HHHccc
Confidence            876543

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=98.96  E-value=6.4e-10  Score=87.28  Aligned_cols=53  Identities=23%  Similarity=0.358  Sum_probs=47.4

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEe----CCeeeEecCCCe
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGEC----KGKAGWFPFGYI  369 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~----~G~~G~fP~~YV  369 (384)
                      ...+.|+|||.+..+.||+|.+||++.|++..  +++||.++.    .+++||||+|||
T Consensus        17 ~e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           17 CELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             CEEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             ceEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            35689999999999999999999999999986  489999997    347899999999

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.92  E-value=1e-09  Score=110.84  Aligned_cols=57  Identities=25%  Similarity=0.458  Sum_probs=51.6

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEE--eCCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~--~~G~~G~fP~~YVe~l~~  374 (384)
                      ...|+|+|||.+.+++||+|.+||+|.|++. ++|||.|+  .+|+.||||+|||+.+..
T Consensus         8 ~~~~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~~~   66 (454)
T 1qcf_A            8 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   66 (454)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             CeEEEECcccCCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhcccccc
Confidence            3569999999999999999999999999988 58899999  589999999999987643

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=98.84  E-value=4.5e-09  Score=77.85  Aligned_cols=42  Identities=29%  Similarity=0.343  Sum_probs=39.1

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK  358 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~  358 (384)
                      ...|+|+|||++.+++||+|.+||+|.|+...++|||.|+++
T Consensus        21 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~n   62 (62)
T 1g2b_A           21 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN   62 (62)
T ss_dssp             SCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEC
T ss_pred             ceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEeC
Confidence            467999999999999999999999999999999999999863

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.79  E-value=1.1e-09  Score=105.92  Aligned_cols=54  Identities=19%  Similarity=0.344  Sum_probs=48.8

Q ss_pred             ceeEeeccCCCCCCC-----CcccCCCCEEEEEeecCCCeeEEEeC------CeeeEecCCCeee
Q 016699          318 FLGEVVHPYQAESDV-----ELTLSVGDYVVVRKVTNNGWAEGECK------GKAGWFPFGYIER  371 (384)
Q Consensus       318 ~~a~alydy~a~~~~-----ELsf~~GdiI~V~~~~d~gW~~G~~~------G~~G~fP~~YVe~  371 (384)
                      ..|+|+|||++..++     +|+|.+||+|.|+...++|||.|++.      |+.||||+||++.
T Consensus         2 ~~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e   66 (295)
T 1kjw_A            2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (295)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             EEEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHH
Confidence            468999999998887     99999999999999999999999984      2789999999964

>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}

Probab=98.79  E-value=1.1e-06  Score=82.83  Aligned_cols=171  Identities=19%  Similarity=0.184  Sum_probs=109.3

Q ss_pred             HHHHHHHHhhccCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHH----HH
Q 016699           87 KLSEDSRKYGSDNTCTSG--NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR----YD  160 (384)
Q Consensus        87 ~l~~~m~~~g~e~~~~~~--~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~----y~  160 (384)
                      .+-+.+.+-|.-..++.+  .++|.+|+++.+.++.|+..++++...+...||.||...++. |.|.+..+.|.    |.
T Consensus        56 af~Da~qKvad~A~~s~g~s~elG~~L~~i~~~hr~ie~~l~~~~k~~~~eli~pLe~k~e~-d~k~~~~~~K~~~~~~k  134 (253)
T 2d1l_A           56 AFLDAFQKVADMATNTRGGTREIGSALTRMCMRHRSIEAKLRQFSSALIDCLINPLQEQMEE-WKKVANQLDKDHAKEYK  134 (253)
T ss_dssp             HHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            456666666664322233  579999999999999999999999999999999999999999 88888866554    57


Q ss_pred             HHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCC--CCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 016699          161 RMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETP--GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQR  238 (384)
Q Consensus       161 ~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~--~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~  238 (384)
                      ++|.++..           +.-+..|.++|.+..+  +....-.-+..+...+.+-+..+......+.+....-|+.+..
T Consensus       135 ~~r~elkk-----------~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~q~v~~~~~~le~~~~~~~r~AL~EERrRyc  203 (253)
T 2d1l_A          135 KARQEIKK-----------KSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKALIEERGRFC  203 (253)
T ss_dssp             HHHHHHHH-----------HHHHHHHHHHHSSCGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhH-----------HHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888           7767766555544321  1111111122222222222222222222333322222555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          239 LTLQRLIAMVEAERTYHQRVLQILDQLEGEML  270 (384)
Q Consensus       239 ~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~  270 (384)
                      +++.+|+.+++.+++++... ..+...-..+.
T Consensus       204 flv~~l~pv~~~e~~~~~e~-~~l~~~l~~~~  234 (253)
T 2d1l_A          204 TFISMLRPVIEEEISMLGEI-THLQTISEDLK  234 (253)
T ss_dssp             HHHHHHHHHHHHHHGGGGGH-HHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHhhhH-HHHHHHHHHHH
Confidence            66888999999999999855 34444444444

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.77  E-value=5.3e-09  Score=84.93  Aligned_cols=57  Identities=18%  Similarity=0.252  Sum_probs=49.9

Q ss_pred             ceeEeeccC--CCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccC
Q 016699          318 FLGEVVHPY--QAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       318 ~~a~alydy--~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~  374 (384)
                      ..++|+|+|  ...+..+|+|.+||+|.|+...+.+||.++. .|+.|+||.+||+.++.
T Consensus        40 ~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~~~d~   99 (102)
T 1ri9_A           40 YSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLADNDG   99 (102)
T ss_dssp             SCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSCC---
T ss_pred             EEEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhccccc
Confidence            457888998  6788999999999999999999999999999 99999999999987653

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.74  E-value=4.8e-09  Score=111.67  Aligned_cols=58  Identities=22%  Similarity=0.323  Sum_probs=50.4

Q ss_pred             ceeEeeccCC---CCCCCCcccCCCCEEEEEee-----cCCCeeEEE--eCCeeeEecCCCeeeccCC
Q 016699          318 FLGEVVHPYQ---AESDVELTLSVGDYVVVRKV-----TNNGWAEGE--CKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       318 ~~a~alydy~---a~~~~ELsf~~GdiI~V~~~-----~d~gW~~G~--~~G~~G~fP~~YVe~l~~~  375 (384)
                      ..|+|+|||.   +.++++|+|++||+|.|...     .++|||.|+  ++|+.|+||++||.++.++
T Consensus       574 ~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lptl  641 (655)
T 3pvl_A          574 KYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPTV  641 (655)
T ss_dssp             CEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECCCS
T ss_pred             hhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECCCC
Confidence            4799999999   78999999999999999888     578999999  5999999999999999765

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=98.67  E-value=2.8e-06  Score=85.10  Aligned_cols=192  Identities=9%  Similarity=0.143  Sum_probs=125.3

Q ss_pred             HHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 016699           52 RLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC--TSGNTLSKAALSYGRARAQMEKERGNLL  129 (384)
Q Consensus        52 ~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~--~~~~~~g~al~~~g~a~~~l~~~~~~~~  129 (384)
                      .+-...+..+.|.+++++.+..++..+..-......|++.+..+..+...  ..+..+..++.+|+.+.+.+...+..++
T Consensus        48 ~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~~~~~L~  127 (407)
T 4h8s_A           48 VFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNLLHTELA  127 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555566888888888776655433333444678888777765431  2345578889999999999999999999


Q ss_pred             HHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHH
Q 016699          130 KALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEV  209 (384)
Q Consensus       130 ~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~  209 (384)
                      ..+...+++||..|+.+ |++.+...+|+|++...+.++           -.--+.. +.|.++.      +.....+..
T Consensus       128 ~~~~~~i~~pL~~f~k~-di~~~ke~kK~Fek~~~~Yd~-----------~l~Ky~~-~~k~k~~------~~~~~e~~~  188 (407)
T 4h8s_A          128 KQLADTMVLPIIQFREK-DLTEVSTLKDLFGLASNEHDL-----------SMAKYSR-LPKKKEN------EKVKTEVGK  188 (407)
T ss_dssp             HHHHHHTHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH-SCSTTCC------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHh-ccccCCc------hHHHHHHHH
Confidence            99999999999999999 999999888999999998888           2211211 1111111      111222333


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          210 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL  262 (384)
Q Consensus       210 k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL  262 (384)
                      ++.+.+..+..-..+-...|..+.....-..+..|..|+.++..|+++..+.+
T Consensus       189 ~l~~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~  241 (407)
T 4h8s_A          189 EVAAARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMF  241 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444433322222333344444333333447889999999999999887753

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.53  E-value=7e-08  Score=94.52  Aligned_cols=52  Identities=21%  Similarity=0.385  Sum_probs=47.1

Q ss_pred             cceeEeeccCCCCCCCC-------cccCCCCEEEEEeecCCCeeEEEe---CCeeeEecCCC
Q 016699          317 YFLGEVVHPYQAESDVE-------LTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGY  368 (384)
Q Consensus       317 ~~~a~alydy~a~~~~E-------Lsf~~GdiI~V~~~~d~gW~~G~~---~G~~G~fP~~Y  368 (384)
                      ...++|+|||++..+++       |+|..||++.|+...+++||.|++   +|..|+||+++
T Consensus        38 ~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           38 AFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             cEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            46799999999987664       999999999999999999999998   57899999987

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.51  E-value=1.1e-07  Score=87.28  Aligned_cols=58  Identities=19%  Similarity=0.335  Sum_probs=51.3

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCC---eeEEEeCCeeeEecCCCeeeccCC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNG---WAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~g---W~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ..+.++|+|.+..+.+|.|..|++|.|+...+.+   ||.|..+|+.||||.+||+.+...
T Consensus       171 ~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~~~  231 (239)
T 1ycs_B          171 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI  231 (239)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC--
T ss_pred             ceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECCcC
Confidence            4578999999999999999999999999886555   999999999999999999988544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.45  E-value=1.3e-07  Score=85.13  Aligned_cols=57  Identities=19%  Similarity=0.482  Sum_probs=52.6

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ....++++|+|++..+.+|+|..||++.|....+.+||.+...|..|+||.+|+...
T Consensus        13 ~~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ   69 (222)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHH
T ss_pred             CceEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhcccc
Confidence            345789999999999999999999999999999999999999999999999998654

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.44  E-value=9.6e-08  Score=76.83  Aligned_cols=53  Identities=19%  Similarity=0.320  Sum_probs=47.7

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecC--CCeeEEEe-CCeeeEecCCCeee
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTN--NGWAEGEC-KGKAGWFPFGYIER  371 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d--~gW~~G~~-~G~~G~fP~~YVe~  371 (384)
                      ..++|+|+ ...+..+|+|..||+|.|+...+  +|||.++. .|+.|+||.+||+.
T Consensus        29 ~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           29 HLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEI   84 (96)
T ss_dssp             EEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEE
T ss_pred             EEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEE
Confidence            46899999 56789999999999999999854  78999999 99999999999986

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=98.44  E-value=2.2e-05  Score=75.28  Aligned_cols=55  Identities=15%  Similarity=0.010  Sum_probs=45.7

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~  374 (384)
                      ...++|+|||.+.   ++++.+||.++++...+..||..+. +|..|+||++|+....|
T Consensus       198 ~~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~ip~p  253 (283)
T 3pe0_A          198 RLPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLVPPP  253 (283)
T ss_dssp             CEEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEECCSC
T ss_pred             CceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEeeCCC
Confidence            4569999999774   7999999999999998889999998 88999999999976544

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.42  E-value=4.9e-07  Score=71.85  Aligned_cols=60  Identities=17%  Similarity=0.159  Sum_probs=48.2

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeec----CCCeeEEEeCCeeeEecCCCeeeccCCCch
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVT----NNGWAEGECKGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~----d~gW~~G~~~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      .+.+..+|.+...-+|+|.+||+|.|+++.    ..+||-...+|..||||++|++.+.+.+..
T Consensus        19 LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~~~~~~   82 (92)
T 1ug1_A           19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRSH   82 (92)
T ss_dssp             EEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCSSC
T ss_pred             eEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcccCCCc
Confidence            466677788888999999999999999984    334444555999999999999999876543

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*

Probab=98.40  E-value=2.2e-05  Score=72.61  Aligned_cols=183  Identities=13%  Similarity=0.162  Sum_probs=129.3

Q ss_pred             hHHHHhhhhcccccCCC--cccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHH
Q 016699           63 FQRDIVRGVEGYIVTGS--KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPL  140 (384)
Q Consensus        63 ~~~~i~r~~e~~~~~~~--~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL  140 (384)
                      .-+.|++.++.|...=+  .|.+.  .||+.+...|..-+     .+|.+...+|++++.|++....++..+. -|+.-|
T Consensus        22 ~Y~~L~~~~~~l~~~~~~l~qtq~--~lG~~f~~l~~~~p-----~l~~~f~~~~~~~r~~~k~g~~Ll~~L~-~f~s~l   93 (224)
T 1i4d_A           22 KYESVLQLGRALTAHLYSLLQTQH--ALGDAFADLSQKSP-----ELQEEFGYNAETQKLLCKNGETLLGAVN-FFVSSI   93 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTCG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhCc-----HHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHH
Confidence            44456666666544422  23344  79999999999754     5999999999999999999999998875 688999


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHH
Q 016699          141 RAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAI  220 (384)
Q Consensus       141 ~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~  220 (384)
                      ..|+.. -+.|....-++|...|-|..+           =|+|++......++    .+.--+++.++..++++++.++.
T Consensus        94 ~T~~~k-aI~DT~lTIk~ye~aR~EY~a-----------y~~~~ee~~~~~~~----~~~l~rve~~q~~~~~ak~kf~k  157 (224)
T 1i4d_A           94 NTLVTK-TMEDTLMTVKQYEAARLEYDA-----------YRTDLEELSLGPRD----AGTRGRLESAQATFQAHRDKYEK  157 (224)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHC----------------CHHHHHHHHHHHHHHH
T ss_pred             HHHHhH-hccHHHHHHHHHHHHhHhHHH-----------HHhhHHHhhccccc----ccchhhHHHHHHHHHHHHHHHHH
Confidence            999999 599999989999999999999           88888655433211    11111344456666666666666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          221 LGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEM  269 (384)
Q Consensus       221 L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL  269 (384)
                      |-.++..-|--++..+-++...+|..|..+...||..+.+.|+..-...
T Consensus       158 LR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~~~~~f  206 (224)
T 1i4d_A          158 LRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQF  206 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence            6555665555556665666677999999999999999999986655444

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.32  E-value=4.3e-07  Score=97.63  Aligned_cols=56  Identities=18%  Similarity=0.297  Sum_probs=49.6

Q ss_pred             CcceeEeeccCCCCCCCC-----cccCCCCEEEEEeecCCCeeEEEeC------CeeeEecCCCeee
Q 016699          316 GYFLGEVVHPYQAESDVE-----LTLSVGDYVVVRKVTNNGWAEGECK------GKAGWFPFGYIER  371 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~E-----Lsf~~GdiI~V~~~~d~gW~~G~~~------G~~G~fP~~YVe~  371 (384)
                      ..++++|+|||++..+++     |+|++||++.|+...+.+||.+++.      +..|+||++|+..
T Consensus       426 ~~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e  492 (721)
T 2xkx_A          426 RGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE  492 (721)
T ss_pred             cceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHH
Confidence            456799999999999988     9999999999999999999999883      3569999999854

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.28  E-value=6.2e-07  Score=89.85  Aligned_cols=56  Identities=20%  Similarity=0.156  Sum_probs=49.1

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEee---cCCCeeEEEeCC------eeeEecCCCeee
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV---TNNGWAEGECKG------KAGWFPFGYIER  371 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~---~d~gW~~G~~~G------~~G~fP~~YVe~  371 (384)
                      ....++|+|||++.++.+|+|..||++.|+..   .+.+||.+.+.+      ..|+||++|+..
T Consensus       105 ~~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          105 DSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             CCEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             cccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            45679999999999999999999999999998   578999999822      489999999864

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.19  E-value=1e-06  Score=85.50  Aligned_cols=56  Identities=14%  Similarity=0.050  Sum_probs=45.9

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCC---------eeEEEeC---C---eeeEecCCCeee
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNG---------WAEGECK---G---KAGWFPFGYIER  371 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~g---------W~~G~~~---G---~~G~fP~~YVe~  371 (384)
                      +.++++|+|||++..+++|+|..||++.|+...++|         ||.+.+-   |   ..|++|++|+..
T Consensus         3 dsfyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            3 DSFYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             CCEEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             ccEEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            457899999999999999999999999999987655         9999882   2   689999998743

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.12  E-value=2.3e-06  Score=87.63  Aligned_cols=55  Identities=18%  Similarity=0.127  Sum_probs=48.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEee---cCCCeeEEEe---CC---eeeEecCCCeee
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV---TNNGWAEGEC---KG---KAGWFPFGYIER  371 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~---~d~gW~~G~~---~G---~~G~fP~~YVe~  371 (384)
                      .+.++++|+|++..+.+|+|..||++.|+..   .+.+||.+.+   ++   ..|+||++|+..
T Consensus        98 s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A           98 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             ccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            4679999999999999999999999999998   6789999988   33   689999999854

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=98.12  E-value=0.00034  Score=71.17  Aligned_cols=54  Identities=9%  Similarity=-0.021  Sum_probs=47.8

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeecc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRD  373 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~  373 (384)
                      +..+++||||..   .++++.+||++++....+..||..+. +|..|+||+.|+-...
T Consensus       283 ~~~V~alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~ipp  337 (450)
T 3r6n_A          283 PIILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPP  337 (450)
T ss_dssp             CCEEEESSCEEE---TTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEECCS
T ss_pred             CceEEEeccccC---CeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEecCC
Confidence            356999999984   78999999999999999999999998 7899999999986553

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=97.91  E-value=1.2e-07  Score=93.21  Aligned_cols=57  Identities=19%  Similarity=0.307  Sum_probs=45.2

Q ss_pred             eeEeeccCCC----CCCCCccc--CCCCEEEEEeecCCCeeEEEeCC---eeeEecCC-CeeeccCC
Q 016699          319 LGEVVHPYQA----ESDVELTL--SVGDYVVVRKVTNNGWAEGECKG---KAGWFPFG-YIERRDRV  375 (384)
Q Consensus       319 ~a~alydy~a----~~~~ELsf--~~GdiI~V~~~~d~gW~~G~~~G---~~G~fP~~-YVe~l~~~  375 (384)
                      .++|+|+|.+    .++.+|+|  .+||+|.|+...++|||.|+++|   +.||||.+ ||+.+++.
T Consensus       268 ~~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~~~~~  334 (341)
T 2dyb_A          268 LLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKDNY  334 (341)
T ss_dssp             CHHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEECC--
T ss_pred             chhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEecCCc
Confidence            3467899887    56666766  89999999999999999999755   55599998 88887654

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.90  E-value=7.9e-06  Score=78.77  Aligned_cols=52  Identities=17%  Similarity=0.336  Sum_probs=39.1

Q ss_pred             cceeEeeccCCCCCCC-----CcccCCCCEEEEEeecCCCeeEEEe---CC---eeeEecCCC
Q 016699          317 YFLGEVVHPYQAESDV-----ELTLSVGDYVVVRKVTNNGWAEGEC---KG---KAGWFPFGY  368 (384)
Q Consensus       317 ~~~a~alydy~a~~~~-----ELsf~~GdiI~V~~~~d~gW~~G~~---~G---~~G~fP~~Y  368 (384)
                      .+.+||+|||++..++     .|+|..||++.|++..++|||.+++   ++   ..|++|+..
T Consensus         5 s~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~   67 (292)
T 3tvt_A            5 SLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKR   67 (292)
T ss_dssp             CCEEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHH
T ss_pred             eEEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChH
Confidence            4679999999998765     5999999999999999999999986   22   479999853

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=96.92  E-value=0.27  Score=46.05  Aligned_cols=100  Identities=17%  Similarity=0.162  Sum_probs=65.3

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC---CC-CCChhHHHHHHHHHHHHHHHHH
Q 016699           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT---CT-SGNTLSKAALSYGRARAQMEKE  124 (384)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~---~~-~~~~~g~al~~~g~a~~~l~~~  124 (384)
                      +++.|+.+++.+..|.++|..-..--   ...-.+-+..|..-..++.....   .. ..+.+..++..+-+....++..
T Consensus        15 g~~~l~~r~~~g~~~~~el~~f~~eR---a~iE~eYak~L~kLa~~~~~~~~~~~~~~~~~t~~~aw~~~~~~~e~~a~~   91 (305)
T 2efl_A           15 QFDNLEKHTQWGIDILEKYIKFVKER---TEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQ   91 (305)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTSCC-------CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccccccCccccccccHHHHHHHHHHHHHHHHHH
Confidence            68888888888888887776543210   00001122233333334322110   00 1346888999999999999999


Q ss_pred             HHHHHHHHhhhhchHHHHHhcCCChHHHH
Q 016699          125 RGNLLKALGTQVAEPLRAMVLGAPLDDAR  153 (384)
Q Consensus       125 ~~~~~~~~~~~~l~PL~~~~~~~~lk~~~  153 (384)
                      +..|...+...+++||..+...  ++..+
T Consensus        92 h~~~a~~l~~~v~~~l~~~~~~--~~~~r  118 (305)
T 2efl_A           92 HEVISENMASQIIVDLARYVQE--LKQER  118 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            9999999999999999999874  55444

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=96.90  E-value=0.28  Score=46.01  Aligned_cols=99  Identities=16%  Similarity=0.131  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhc------cCCCCCCChhHHHHHHHHHHHHHH
Q 016699           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS------DNTCTSGNTLSKAALSYGRARAQM  121 (384)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~------e~~~~~~~~~g~al~~~g~a~~~l  121 (384)
                      .+++.|+.+++.+..|.++|..-..-   ....--|-+..|..-+.+|..      +.+  +...+..+...+-....++
T Consensus         7 ~g~~~l~~~~~~g~~~~~el~~f~ke---Ra~iE~eYak~L~kLakk~~~~~~~~~~~~--~~~t~~~~w~~~l~~~e~~   81 (301)
T 2efk_A            7 GQFEVLERHTQWGLDLLDRYVKFVKE---RTEVEQAYAKQLRSLVKKYLPKRPAKDDPE--SKFSQQQSFVQILQEVNDF   81 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHSCC-------C--TTSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccccccccc--ccchHHHHHHHHHHHHHHH
Confidence            47888998888888887777654321   000001122234444444432      222  3457889999999999999


Q ss_pred             HHHHHHHHHHHhhhhchHHHHHhcCCChHHHH
Q 016699          122 EKERGNLLKALGTQVAEPLRAMVLGAPLDDAR  153 (384)
Q Consensus       122 ~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~  153 (384)
                      +..+..|...+..++++||..+...  .+..+
T Consensus        82 a~~h~~~a~~L~~~v~~~l~~~~~~--~~~~r  111 (301)
T 2efk_A           82 AGQRELVAENLSVRVCLELTKYSQE--MKQER  111 (301)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            9999999999999999999998874  45443

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}

Probab=96.71  E-value=0.065  Score=53.24  Aligned_cols=152  Identities=13%  Similarity=0.012  Sum_probs=93.9

Q ss_pred             HHHHHHHHhhccCC---CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHH
Q 016699           87 KLSEDSRKYGSDNT---CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR  163 (384)
Q Consensus        87 ~l~~~m~~~g~e~~---~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r  163 (384)
                      .||..+...|.-+.   +...+.+++||.++|++...+++...+-...--..|.+||+.|+.-  +.-++....++.+..
T Consensus       228 ~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~l--l~s~Kdll~~R~~aL  305 (386)
T 4akv_A          228 KLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGL--LSNFPDIIHLQKGAF  305 (386)
T ss_dssp             HHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            46666666665321   1134579999999999999999998888888888899999998773  544443333233333


Q ss_pred             HHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016699          164 QEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR  243 (384)
Q Consensus       164 ~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~  243 (384)
                      +....               ..|.+.+.|-+      ..++..++.+|+.....       ....|...+.++..-.-..
T Consensus       306 ~k~~e---------------a~kl~~~~K~~------~~~~~e~~~r~e~IS~~-------~~~El~rF~~~Rv~Dfk~~  357 (386)
T 4akv_A          306 AKVKE---------------SQRMSDEGRMV------QDEADGIRRRCRVVGFA-------LQAEMNHFHQRRELDFKHM  357 (386)
T ss_dssp             HHHHH---------------HHHHHHTTSSC------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH---------------HHHHHHhCCcc------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            22222               22222221111      23555666666666544       3333333333322233558


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          244 LIAMVEAERTYHQRVLQILDQLEGE  268 (384)
Q Consensus       244 L~a~veAql~Yh~q~~~iL~qL~~e  268 (384)
                      |..|++.|..||++....+..+...
T Consensus       358 l~eyle~qi~~~~~~~~~le~~l~~  382 (386)
T 4akv_A          358 MQNYLRQQILFYQRVGQQLEKTLRM  382 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999988776543

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}

Probab=96.56  E-value=0.33  Score=44.89  Aligned_cols=93  Identities=8%  Similarity=0.129  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 016699           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERG  126 (384)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~  126 (384)
                      +.+++.|+.++..+..|.++|..-..-   ....--+-+..|..-..++...   ...+.+..++-.+-....+++..+.
T Consensus        17 ~~g~~~l~~~~~~g~~~~~el~~f~~e---Ra~iE~eYak~L~kLa~~~~~~---~~~gs~~~~w~~~~~~~e~~a~~h~   90 (276)
T 2v0o_A           17 NSGFDVLYHNMKHGQISTKELADFVRE---RATIEEAYSRSMTKLAKSASNY---SQLGTFAPVWDVFKTSTEKLANCHL   90 (276)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTS---CCCSSSGGGHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCC---CCcchHHHHHHHHHHHHHHHHHHHH
Confidence            468889999999888888887654421   0000011122333333444321   1333577788888888889999999


Q ss_pred             HHHHHHhhhhchHHHHHhcC
Q 016699          127 NLLKALGTQVAEPLRAMVLG  146 (384)
Q Consensus       127 ~~~~~~~~~~l~PL~~~~~~  146 (384)
                      .|...+ ..++.||..+...
T Consensus        91 ~~a~~l-~~~~~~l~~~~~~  109 (276)
T 2v0o_A           91 DLVRKL-QELIKEVQKYGEE  109 (276)
T ss_dssp             HHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHH
Confidence            999999 5899999998873

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*

Probab=96.38  E-value=0.065  Score=52.76  Aligned_cols=151  Identities=10%  Similarity=-0.022  Sum_probs=92.1

Q ss_pred             HHHHHHHHhhccC---CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcC-CChHHHHHHHHHHHHH
Q 016699           87 KLSEDSRKYGSDN---TCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG-APLDDARHLAQRYDRM  162 (384)
Q Consensus        87 ~l~~~m~~~g~e~---~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~-~~lk~~~~~~k~y~~~  162 (384)
                      .||..+...|.-+   ++...+.++++|.++|++...+++...+-...--..|.+||+.|+.- .-+|++.++.+   +.
T Consensus       208 ~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~~i~~l~~~qa~~d~~~l~E~L~~Y~~~l~avKd~l~~r~---~a  284 (366)
T 3dyt_A          208 KIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHK---GA  284 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHSGGGTHHHHHHHHHHHHHHHTTHHHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence            5677776666521   11234579999999999999999999888888788999999987652 02455553333   11


Q ss_pred             HHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016699          163 RQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQ  242 (384)
Q Consensus       163 r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~  242 (384)
                      ......               ..|...+.|    ..  ..++..++.+|+.....       +...|...+.+...=.-.
T Consensus       285 L~k~~e---------------~~kl~~~~K----~~--~~~~~~~~~r~e~is~~-------~~~El~rF~~~r~~Dfk~  336 (366)
T 3dyt_A          285 IEKVKE---------------SDKLVATSK----IT--LQDKQNMVKRVSIMSYA-------LQAEMNHFHSNRIYDYNS  336 (366)
T ss_dssp             HHHHHT---------------HHHHHHTTS----SC--HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH---------------HHHHHhccC----cc--hhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            111111               111111111    11  13566677777766655       233332333222222245


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          243 RLIAMVEAERTYHQRVLQILDQLEGE  268 (384)
Q Consensus       243 ~L~a~veAql~Yh~q~~~iL~qL~~e  268 (384)
                      .|..|++.|..|+++..+.+.++...
T Consensus       337 ~l~~yl~~qi~~~k~~~~~w~~~l~~  362 (366)
T 3dyt_A          337 VIRLYLEQQVQFYETIAEKLRQALSR  362 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999998877654

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}

Probab=96.27  E-value=0.29  Score=48.74  Aligned_cols=100  Identities=11%  Similarity=0.029  Sum_probs=65.9

Q ss_pred             HHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhc--cCCCCCCChhHHHHHHHHHHHHH
Q 016699           43 ELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS--DNTCTSGNTLSKAALSYGRARAQ  120 (384)
Q Consensus        43 e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~--e~~~~~~~~~g~al~~~g~a~~~  120 (384)
                      ++..+.+++.|..+++.+..|-++|..-.--   ....--+-+..|..-+.+|..  ..|..+++.+..+...+-....+
T Consensus         7 ~lw~~~gf~~L~kr~~~g~~lledl~~F~re---RA~IE~eYAk~L~kLakk~~~k~~~~~~~~~tl~~aW~~ll~ete~   83 (406)
T 4dyl_A            7 ELCSPQGHGVLQQMQEAELRLLEGMRKWMAQ---RVKSDREYAGLLHHMSLQDSGGQSRAISPDSPISQSWAEITSQTEG   83 (406)
T ss_dssp             HSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC------------CCSHHHHHHHHHHHHHHH
T ss_pred             hhcCccchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHHHHH
Confidence            4445678999999999998888888764411   000001112234444444432  11222446788999999999999


Q ss_pred             HHHHHHHHHHHHhhhhchHHHHHhc
Q 016699          121 MEKERGNLLKALGTQVAEPLRAMVL  145 (384)
Q Consensus       121 l~~~~~~~~~~~~~~~l~PL~~~~~  145 (384)
                      ++..+..+...+....+.||..++.
T Consensus        84 ~a~~H~~lae~L~~~v~~~l~~~~k  108 (406)
T 4dyl_A           84 LSRLLRQHAEDLNSGPLSKLSLLIR  108 (406)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998876

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=95.99  E-value=0.42  Score=46.21  Aligned_cols=92  Identities=13%  Similarity=0.129  Sum_probs=63.8

Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhhcc--cccCCCcccchhhHHHHHHHHhhcc--CCCCCCChhHHHHHHHHHHHHHHHH
Q 016699           48 QRLERLYISTRAGKHFQRDIVRGVEG--YIVTGSKQVEIGTKLSEDSRKYGSD--NTCTSGNTLSKAALSYGRARAQMEK  123 (384)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~--~~~~~~~~~e~~~~l~~~m~~~g~e--~~~~~~~~~g~al~~~g~a~~~l~~  123 (384)
                      .+++.|+.+++.+..|.++|..-.--  -|...|     +..|..-+.++..-  .+ ...+.+..++-.+-....+++.
T Consensus        29 ~g~~~L~~r~~~g~~~~~el~~f~keRa~IE~eY-----ak~L~kLakk~~~~~~~~-~e~gtl~~aw~~l~~e~e~~a~  102 (350)
T 3aco_A           29 GNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAY-----AQQLTEWARRWRQLVEKG-PQYGTVEKAWMAFMSEAERVSE  102 (350)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHHHHHHHH
Confidence            48899999999888888877654421  011111     22344444444321  11 1234688899999999999999


Q ss_pred             HHHHHHHHHhhhhchHHHHHhc
Q 016699          124 ERGNLLKALGTQVAEPLRAMVL  145 (384)
Q Consensus       124 ~~~~~~~~~~~~~l~PL~~~~~  145 (384)
                      .+..|...+...++.||+.+..
T Consensus       103 ~H~~la~~L~~~v~~~l~~~~~  124 (350)
T 3aco_A          103 LHLEVKASLMNDDFEKIKNWQK  124 (350)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998865

>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.9  Score=43.28  Aligned_cols=142  Identities=8%  Similarity=0.056  Sum_probs=84.4

Q ss_pred             HHHHHhh-ccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 016699           90 EDSRKYG-SDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEA  168 (384)
Q Consensus        90 ~~m~~~g-~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~  168 (384)
                      +.|.+|+ .++|     .|..+...+-.....++..+..|...+...++.||++|.+. + ...+..++    +.+.|+.
T Consensus       107 ee~~~~~~~e~G-----~l~~~W~~v~~e~e~~a~~H~~la~~L~~ev~~pL~~~~e~-~-~~~~e~~~----l~~~L~~  175 (287)
T 3g9g_A          107 QEMSAFRFNSLG-----ELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVEN-N-TSWRESKD----LHSKLSK  175 (287)
T ss_dssp             HHHHHCCCCCST-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSSSS-C-HHHHHHHH----HHHHHHH
T ss_pred             hhhccccccccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-HHHHHHHH----HHHHHHH
Confidence            4444555 5555     68899999999999999999999999999999999999986 2 22222222    1122333


Q ss_pred             hhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          169 QLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMV  248 (384)
Q Consensus       169 ~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~v  248 (384)
                                 -.-++.+-++|       .++..++..+..+++...-.       +...+.++|.++..+.-..|..|.
T Consensus       176 -----------~ak~le~~~kk-------~~a~~~le~a~~qWes~aP~-------~fe~fQ~lEEeRL~~Lkd~L~~y~  230 (287)
T 3g9g_A          176 -----------NAASIEHYSKN-------NENSSHLEEARRQWDQQSPY-------LFELFETIDYNRLDTLKNCMLRFQ  230 (287)
T ss_dssp             -----------HHHHHHHCSSC-------CSCTHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       11011101111       12344677777777654322       233333555554444455667777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 016699          249 EAERTYHQRVLQILDQLEG  267 (384)
Q Consensus       249 eAql~Yh~q~~~iL~qL~~  267 (384)
                      ....++..+....-+.+..
T Consensus       231 ~~~sd~~~~~~~~~E~~~~  249 (287)
T 3g9g_A          231 TSFSDYLLNTTKECETVMT  249 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7777777665544444433

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=95.74  E-value=1.5  Score=41.94  Aligned_cols=92  Identities=11%  Similarity=0.102  Sum_probs=62.0

Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhhccc--ccCCCcccchhhHHHHHHHHhhcc--CCCCCCChhHHHHHHHHHHHHHHHH
Q 016699           48 QRLERLYISTRAGKHFQRDIVRGVEGY--IVTGSKQVEIGTKLSEDSRKYGSD--NTCTSGNTLSKAALSYGRARAQMEK  123 (384)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~--~~~~~~~~e~~~~l~~~m~~~g~e--~~~~~~~~~g~al~~~g~a~~~l~~  123 (384)
                      .+++.|+.++..+..|.++|..-..-=  |...|     +..|..-+.++..-  .+ ...+.+..++..+-....+++.
T Consensus        20 ~g~~~l~~r~~~g~~~~~el~~f~keRa~iE~eY-----ak~L~kLakk~~~~~~~~-~~~gtl~~aw~~~~~e~e~~a~   93 (337)
T 2x3v_A           20 GNYKRTVKRIDDGHRLCNDLMSCVQERAKIEKAY-----AQQLTDWAKRWRQLIEKG-PQYGSLERAWGAMMTEADKVSE   93 (337)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhccCC-CCCchHHHHHHHHHHHHHHHHH
Confidence            578889988888888887776543210  11111     22333333333221  01 1234577899999999999999


Q ss_pred             HHHHHHHHHhhhhchHHHHHhc
Q 016699          124 ERGNLLKALGTQVAEPLRAMVL  145 (384)
Q Consensus       124 ~~~~~~~~~~~~~l~PL~~~~~  145 (384)
                      .+..|...+...+++||+.+..
T Consensus        94 ~H~~~a~~L~~~v~~~l~~~~~  115 (337)
T 2x3v_A           94 LHQEVKNSLLNEDLEKVKNWQK  115 (337)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998764

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=95.68  E-value=1.3  Score=41.81  Aligned_cols=92  Identities=13%  Similarity=0.129  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhhcc--cccCCCcccchhhHHHHHHHHhhcc--CCCCCCChhHHHHHHHHHHHHHHHH
Q 016699           48 QRLERLYISTRAGKHFQRDIVRGVEG--YIVTGSKQVEIGTKLSEDSRKYGSD--NTCTSGNTLSKAALSYGRARAQMEK  123 (384)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~--~~~~~~~~~e~~~~l~~~m~~~g~e--~~~~~~~~~g~al~~~g~a~~~l~~  123 (384)
                      .+++.|+.++..+..|.++|..-.--  -|...|     +..|..-+.++..-  .+ ...+.+..++-.+-....+++.
T Consensus        29 ~g~~~l~~r~~~g~~~~~el~~f~keRa~iE~eY-----ak~L~kLakk~~~~~~~~-~e~gtl~~aw~~i~~e~e~~a~  102 (312)
T 3abh_A           29 GNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAY-----AQQLTEWARRWRQLVEKG-PQYGTVEKAWMAFMSEAERVSE  102 (312)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCC-CCCChHHHHHHHHHHHHHHHHH
Confidence            48899999998888888877654411  011111     22333333444310  01 1224688899999999999999


Q ss_pred             HHHHHHHHHhhhhchHHHHHhc
Q 016699          124 ERGNLLKALGTQVAEPLRAMVL  145 (384)
Q Consensus       124 ~~~~~~~~~~~~~l~PL~~~~~  145 (384)
                      .+..|...+...++.||+.++.
T Consensus       103 ~H~~~a~~L~~~v~~~l~~~~~  124 (312)
T 3abh_A          103 LHLEVKASLMNDDFEKIKNWQK  124 (312)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998754

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=95.67  E-value=0.5  Score=44.26  Aligned_cols=92  Identities=11%  Similarity=0.037  Sum_probs=57.2

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhhccc--ccCCCcccchhhHHHHHHHH-hhccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 016699           49 RLERLYISTRAGKHFQRDIVRGVEGY--IVTGSKQVEIGTKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKER  125 (384)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~--~~~~~~~~e~~~~l~~~m~~-~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~  125 (384)
                      +++.|+.+++.+..+.++|..-..--  +...|.+  ...+|+..... .+.. +  ..+.+..++..+-.....++..+
T Consensus         9 g~~~l~~r~~~g~~~~~el~~f~keRa~iE~~Yak--~L~kL~~~~~~~~~~~-~--~~gs~~~aw~~~~~~~e~~a~~h   83 (290)
T 3i2w_A            9 NYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAK--SLRTWSKKWGELIEKG-P--EYGTTEAAWKGVLTESERISDVH   83 (290)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHS-S--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhcCC-C--CCchHHHHHHHHHHHHHHHHHHH
Confidence            45567777776666666665433210  1111111  11133332211 1111 1  23358889999999999999999


Q ss_pred             HHHHHHHhhhhchHHHHHhc
Q 016699          126 GNLLKALGTQVAEPLRAMVL  145 (384)
Q Consensus       126 ~~~~~~~~~~~l~PL~~~~~  145 (384)
                      ..|...+...++.||+.+..
T Consensus        84 ~~~a~~l~~~v~~~l~~~~~  103 (290)
T 3i2w_A           84 MKIKDNLCNDVNSQIKTWQK  103 (290)
T ss_dssp             HHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999885

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=94.47  E-value=0.069  Score=40.33  Aligned_cols=41  Identities=32%  Similarity=0.417  Sum_probs=34.6

Q ss_pred             ccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCC
Q 016699          335 TLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       335 sf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~p  376 (384)
                      .+..|+.+.|+... .+|++.+.+|..||+...||....+.|
T Consensus        26 ~l~~G~~v~v~~~~-~~W~kV~~~g~~GwV~~~yl~~~~~~~   66 (74)
T 2krs_A           26 TLRNNDKVEIIKEV-DGWYEIRFNGKVGYASKSYITIVNEGS   66 (74)
T ss_dssp             EEETTCEEEEEEEE-TTEEEEEETTEEEEECSSSEEESSSSC
T ss_pred             EECCCCEEEEEEEe-CCEEEEEECCeEEEEEhHHcCCCCCcc
Confidence            46789999998874 689999999999999999998876554

>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A

Probab=93.77  E-value=4.8  Score=38.34  Aligned_cols=91  Identities=19%  Similarity=0.184  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhhcc--cccCCCcccchhhHHHHHHHHhhc--cCCCCCCChhHHHHHHHHHHHHHHHH
Q 016699           48 QRLERLYISTRAGKHFQRDIVRGVEG--YIVTGSKQVEIGTKLSEDSRKYGS--DNTCTSGNTLSKAALSYGRARAQMEK  123 (384)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~--~~~~~~~~~e~~~~l~~~m~~~g~--e~~~~~~~~~g~al~~~g~a~~~l~~  123 (384)
                      .+++.|+.+++.+..|.++|..-.--  -|...|.+     .|..-..+|-.  +.+ ...+.+..++..+-.....++.
T Consensus        20 ~g~~~l~~~~~~g~~~~~el~~f~keRa~iE~~Yak-----~L~kLakk~~~~~~~~-~e~gsl~~aw~~i~~e~e~~a~   93 (320)
T 3m3w_A           20 GNYRRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQ-----QLADWARKWRGAVEKG-PQYGTLEKAWHAFFTAAERLSE   93 (320)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhccCC-CCCChHHHHHHHHHHHHHHHHH
Confidence            68889999999888888887754421  01111211     22222222211  111 1233688899999999999999


Q ss_pred             HHHHHHHHHhhhhchHHHHHh
Q 016699          124 ERGNLLKALGTQVAEPLRAMV  144 (384)
Q Consensus       124 ~~~~~~~~~~~~~l~PL~~~~  144 (384)
                      .+..+...+...++.||+.+.
T Consensus        94 ~H~~~a~~l~~~v~~~l~~~~  114 (320)
T 3m3w_A           94 LHLEVREKLHGPDSERVRTWQ  114 (320)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999876

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=93.58  E-value=0.089  Score=40.02  Aligned_cols=40  Identities=23%  Similarity=0.268  Sum_probs=33.6

Q ss_pred             ccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          335 TLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       335 sf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      .+..|+.+.|+.. ..||+..+.+|..||+...||....+.
T Consensus        28 ~l~~G~~v~vl~~-~~~W~kV~~~g~~GwV~~~yl~~~~~~   67 (76)
T 2kt8_A           28 SLSGNTKVTIVGE-EGAFYKIEYKGSHGYVAKEYIKDIKDE   67 (76)
T ss_dssp             EECTTCEEEEEEE-ETTEEEEEETTEEEEEEGGGEEEEECC
T ss_pred             EECCCCEEEEEEE-eCCEEEEEECCEEEEEEhHHhCcCCCc
Confidence            4668999999886 468999999999999999999876543

>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}

Probab=92.81  E-value=0.053  Score=43.66  Aligned_cols=49  Identities=20%  Similarity=0.246  Sum_probs=27.5

Q ss_pred             hccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHH
Q 016699          173 SSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGK  223 (384)
Q Consensus       173 ~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~  223 (384)
                      .|||||+||  .++.++|+.+-...-+.+..-+.+-.||..+++....||.
T Consensus         8 ~s~LPpeqR--kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD   56 (98)
T 2ke4_A            8 FSHLPPEQQ--RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGD   56 (98)
T ss_dssp             SSSSCHHHH--HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCC
T ss_pred             hccCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence            489999999  4444444433221222233455566666666666555543

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=92.52  E-value=0.061  Score=40.15  Aligned_cols=38  Identities=26%  Similarity=0.563  Sum_probs=31.4

Q ss_pred             ccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          335 TLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       335 sf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      .+..|+.+.|+.. ..+|+..+.+|..||++..|+....
T Consensus        27 ~l~~G~~v~v~~~-~~~W~~V~~~G~~GwV~~~~l~~~~   64 (70)
T 2kq8_A           27 ALPQGQKVQVISE-NSGWSKINYNGQTGYIGTRYLSKLE   64 (70)
T ss_dssp             CCCSSSSCCCCEE-ETTEEEEEETTEEEEEETTSCSCCC
T ss_pred             EECCCCEEEEEEe-cCCEEEEEECCEEEEEEhHHccchh
Confidence            4667888887776 4689999999999999999997654

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=89.03  E-value=1.3  Score=33.28  Aligned_cols=49  Identities=24%  Similarity=0.307  Sum_probs=40.4

Q ss_pred             eEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe------CCeeeEecCCC
Q 016699          320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC------KGKAGWFPFGY  368 (384)
Q Consensus       320 a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~------~G~~G~fP~~Y  368 (384)
                      ..|..||.+-.++|++...|+++.++..+.-+-+...+      ....||+|-.-
T Consensus        10 m~V~~dY~A~ke~eI~v~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~v   64 (74)
T 1wfw_A           10 MTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSI   64 (74)
T ss_dssp             EECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGG
T ss_pred             EEEEeeeeeeccceeccccCcEEEEEEecCcceEEEEeecCCCCccccCcccccE
Confidence            66789999999999999999999999988777666655      23569999644

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=88.26  E-value=0.17  Score=36.38  Aligned_cols=18  Identities=22%  Similarity=0.578  Sum_probs=14.7

Q ss_pred             CeeeEecCCCeeeccCCC
Q 016699          359 GKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       359 G~~G~fP~~YVe~l~~~p  376 (384)
                      |+.||||.+||+.+.+.+
T Consensus         2 g~~G~~P~~yv~~~~~~~   19 (62)
T 1g2b_A            2 DRQGFVPAAYVKKLDSGT   19 (62)
T ss_dssp             CEEEEEEGGGEEECCCCS
T ss_pred             CCccccccceEeecCCCC
Confidence            789999999999775533

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=85.98  E-value=0.41  Score=35.98  Aligned_cols=23  Identities=22%  Similarity=0.039  Sum_probs=20.5

Q ss_pred             cceeEeeccCCCCCCCCcccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVG  339 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~G  339 (384)
                      ...++|+|||+++.++||+|.+.
T Consensus        52 ~~~~~alydy~a~~~dElsf~~~   74 (77)
T 2jmc_A           52 KELVLALYDYQESGDNAPSYSPP   74 (77)
T ss_dssp             CCEEEESSCCCCSSCCCCCSCCC
T ss_pred             CceEEECCCcCCCCCCccccCCC
Confidence            46799999999999999999864

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=83.45  E-value=24  Score=31.45  Aligned_cols=97  Identities=12%  Similarity=0.091  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHH----HHHhHHHHHHHH
Q 016699          154 HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN----MAILGKEAAAAM  229 (384)
Q Consensus       154 ~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~----~~~L~~e~~~~~  229 (384)
                      ++...||+.|..++.           -+    .+..|.+++.....++.+++.|+..|+.....    ++.|.......+
T Consensus       140 ~k~lDyD~~~~~l~k-----------l~----~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~  204 (244)
T 1uru_A          140 RKLIDYDGQRHSFQN-----------LQ----ANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFL  204 (244)
T ss_dssp             HHHHHHHHHHHHHHH-----------HH----TTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHH-----------HH----hccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            455669999999988           22    12113355666667888999999999976433    344432222221


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          230 AAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEM  269 (384)
Q Consensus       230 ~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL  269 (384)
                      .   .. -.-++.....|...-...+.....++..|..+.
T Consensus       205 ~---~~-l~~fv~~q~~~~~~~~~~~~~l~~~~~~l~~~~  240 (244)
T 1uru_A          205 V---TN-LQTLFATEQVFHNETAKIYSELEAIVDKLATES  240 (244)
T ss_dssp             H---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             H---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            1   11 111244445666666677777888877776653

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=82.20  E-value=28  Score=31.36  Aligned_cols=90  Identities=13%  Similarity=0.118  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHH----HHHHhHHHHHHHH
Q 016699          154 HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKS----NMAILGKEAAAAM  229 (384)
Q Consensus       154 ~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~----~~~~L~~e~~~~~  229 (384)
                      ++...||+.|..++.               +.++  +.+++..-..++.+++.|+.+|+...+    .++.|.......+
T Consensus       155 ~k~lDyD~~~~~l~k---------------l~~k--~~kd~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~  217 (251)
T 2fic_A          155 RKLVDYDSARHHYES---------------LQTA--KKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFY  217 (251)
T ss_dssp             HHHHHHHHHHHHHHH---------------HHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHH---------------HHhc--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566679999999887               2111  122444445567799999999996643    3444433222221


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          230 A-AVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL  265 (384)
Q Consensus       230 ~-~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL  265 (384)
                      . .+..     ++.-...|...-...+.+...+|+.|
T Consensus       218 ~~~l~~-----f~~~Q~~f~~~~~~~~~~L~~~l~~~  249 (251)
T 2fic_A          218 VNTFQS-----IAGLEENFHKEMSKLNQNLNDVLVGL  249 (251)
T ss_dssp             HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1 1111     13333455555567777777777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d1i4da_	200	a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Hum	1e-14
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	1e-13
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	2e-13
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	5e-13
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	7e-13
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	7e-13
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	2e-12
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	4e-12
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	6e-12
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	2e-11
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-11
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	4e-11
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	4e-11
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	4e-11
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	9e-11
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	9e-11
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	1e-10
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	2e-10
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	2e-10
d1urua_	217	a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila	2e-10
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	2e-10
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-10
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	6e-10
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	6e-10
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	7e-10
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	7e-10
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	9e-10
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	1e-09
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	2e-09
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	2e-09
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	3e-09
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	3e-09
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	3e-09
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-09
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	3e-08
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	4e-08
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	9e-08
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	9e-08
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	2e-07
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	4e-07
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	6e-07
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	3e-06
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	1e-05
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	2e-05
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	4e-04
d2d4ca1	237	a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sap	6e-04
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	0.002

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 200

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 1e-14
 Identities = 30/226 (13%), Positives = 71/226 (31%), Gaps = 28/226 (12%)

Query: 39  TDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSD 98
           T + EL     +E L    R  K     +++            ++    L +        
Sbjct: 3   TVDLELELQ--IELL----RETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQK 56

Query: 99  NTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR 158
           +       L +        +  + K    LL A+   V+      ++   ++D     ++
Sbjct: 57  SP-----ELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINT--LVTKTMEDTLMTVKQ 109

Query: 159 YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM 218
           Y+  R E +A                     ++   P +     +L++A+      +   
Sbjct: 110 YEAARLEYDAYR---------------TDLEELSLGPRDAGTRGRLESAQATFQAHRDKY 154

Query: 219 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQ 264
             L  + A  +  +E  + ++  ++L+    A   Y     + L+Q
Sbjct: 155 EKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQ 200

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (154), Expect = 1e-13
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 310 GSTDAMG--YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFG 367
           GS+ + G    + +    ++  ++ EL++  GD + V +V   GW EG   G+ GWFP  
Sbjct: 1   GSSGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSN 60

Query: 368 YIE 370
           Y+ 
Sbjct: 61  YVR 63

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + +  +  + D EL    GD++ V   ++  W +G C G+ G FP  Y+ 
Sbjct: 5   QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 54

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 61.2 bits (149), Expect = 5e-13
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            +  +  +   EL    GD + +    +  W EG+   + G FP  Y+ 
Sbjct: 7   ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.5 bits (147), Expect = 7e-13
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 321 EVV---HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
           E+V   + YQ +S  E+T+  GD + +   TN  W + E   + G+ P  Y+++
Sbjct: 1   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 54

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (148), Expect = 7e-13
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            ++ ++A  + EL    G+ V V   +N  W  G    K G FP  Y+ 
Sbjct: 6   ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           E +  Y+A    +L    GD ++V    N  W EGE KGK G FP  ++E
Sbjct: 9   EALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (143), Expect = 4e-12
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369
           GS+ + G      ++PY +    +LT + G+ ++V +  +  W  G    ++G FP  Y+
Sbjct: 1   GSSGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYV 59

Query: 370 ERRD 373
           + +D
Sbjct: 60  KPKD 63

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.1 bits (141), Expect = 6e-12
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            ++ ++A  D ELT   G+ + V   ++  W +GE     G FP  ++ 
Sbjct: 7   ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 55

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 2e-11
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMA 381
            +  Y A    E++L  G+ V V     +GW         G+FP  Y+++  + ++    
Sbjct: 19  AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQR 78

Query: 382 EV 383
           ++
Sbjct: 79  QI 80

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            ++ Y A ++ EL+ S G  + V    +  W +GE  G  G FP  Y++
Sbjct: 39  AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 87

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (134), Expect = 4e-11
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 322 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIERR 372
             + ++A +D EL+   GD + V+ +  +  W + E  GK G+ P  YIE +
Sbjct: 5   AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 4e-11
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 310 GSTDAMG--YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN-NGWAEGECKGKAGWFPF 366
           GS+ + G  +   + ++  +AE D EL+ + G        +   GW EG   GK G  P 
Sbjct: 1   GSSGSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPE 60

Query: 367 GYIE 370
            Y+E
Sbjct: 61  NYVE 64

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (134), Expect = 4e-11
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIER 371
            +  +    + +L    GD + +R      W   E  +GK G  P  Y+E+
Sbjct: 6   ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 9e-11
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
           + +  + A+ D  L  S  D + V +     W  GE  G  GWFP  Y++
Sbjct: 14  QALCSWTAKKDNHLNFSKHDIITVLE-QQENWWFGEVHGGRGWFPKSYVK 62

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 9e-11
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 311 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVV----RKVTNNGWAEGECKGKAGWFPF 366
            ++A G  +   V+ ++A +  EL++S    + +        N  W   E  GK G+ P 
Sbjct: 7   GSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPS 66

Query: 367 GYIERRD 373
            YI + +
Sbjct: 67  NYIRKTE 73

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (131), Expect = 1e-10
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 322 VVHPYQAESDVELTLSVGDYVVV-RKVTNNGWAEGECKGKAGWFPFGYIERRD 373
            ++ + A  D  L+++ G+ + V     N  W E + K   GW P  YI   +
Sbjct: 5   ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN 57

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTN--NGWAEGECKGKAGWFPFGYIE 370
            ++ +  E   +L    GD + + K ++  N W  G   G+ G FP  Y+E
Sbjct: 6   ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 56

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (131), Expect = 2e-10
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA-GWFPFGYIER 371
            +  Y+A+ + ELT      +   +    GW  G+  GK   WFP  Y+E 
Sbjct: 11  ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEE 61

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.2 bits (140), Expect = 2e-10
 Identities = 30/232 (12%), Positives = 61/232 (26%), Gaps = 32/232 (13%)

Query: 47  HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNT 106
              L        +    Q++       YI            L +   +            
Sbjct: 15  DDHLNNFNRQQASANRLQKE----FNNYIRCVRAAQAASKTLMDSVCEIYEP-------- 62

Query: 107 LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166
                 +        E    +    LG QV  PL          + +   ++ +R   + 
Sbjct: 63  QWSGYDALQAQTGASESLWADFAHKLGDQVLIPLNT--YTGQFPEMKKKVEKRNRKLIDY 120

Query: 167 EAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAA 226
           + Q                     ++         +KL     +L + +    IL  E  
Sbjct: 121 DGQR---------------HSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELH 165

Query: 227 AAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEM---LSERQR 275
             + A+   +    +  L  +   E+ +H    +I  +LE  +    +E QR
Sbjct: 166 DELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQR 217

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
             + Y A  D ELT    D ++  +  ++ W  GE +  G  G FP  Y+ 
Sbjct: 5   AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (131), Expect = 2e-10
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYV--VVRKVTNNGWAEGECKGKAGWFPFG 367
           GS+ + GY     ++P++A +  E++ + GD +    + V   GW  G  +G  GWFP  
Sbjct: 1   GSSGSSGY---RALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCN 57

Query: 368 YIERRD 373
           Y+E+  
Sbjct: 58  YVEKMP 63

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 6e-10
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 320 GEVV--HPYQAESDVELTLSVGDYVVVRKVTN---NGWAEGECKGKAGWFPFGYIE 370
           G +     Y+ ++D EL +  GD + +    +     W       K G+ P   + 
Sbjct: 5   GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 60

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 6e-10
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGW-AEGECKGKAGWFPFGYIER 371
            +H Y+   D +L    G+ + + + +   W A+    G+ G+ PF ++ +
Sbjct: 11  ALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 7e-10
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 323 VHPYQAESDVELTLSVGDYVVVRKVTNNGW-AEGECKGKAGWFPFGYIERRDRV 375
           ++ Y+A    +L+   GD +VV + +   W A      K G+ P  Y+ R D +
Sbjct: 10  LYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSL 63

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 7e-10
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRD 373
            ++ Y++ ++ +L+   G+ + +   T   W        G+ G+ P  Y+   D
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 9e-10
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 373
            +  Y+  S  E+ LS GD V V + + +GW   + K K GW P  ++E  D
Sbjct: 7   AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD 58

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (124), Expect = 1e-09
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIERRD 373
            ++ Y   +  +L L  GD   + + +N  W     K G+ G+ P  Y+   +
Sbjct: 13  ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
            ++ Y A    E++   GD ++  +  + GW  G  +  G+ G  P  Y+E
Sbjct: 8   AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVV-VRKVTNNGWAEGECK-GKAGWFPFGYIERRDRV 375
             + +   ++ +L    GD +  V    +  W + + K G+ G  P  Y+++R+ V
Sbjct: 11  AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGV 66

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 321 EVV---HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIERRD 373
           E+V   + +QA    +L L  G   ++ +  +  W     K G  G+ P  Y+  + 
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (121), Expect = 3e-09
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGW--AEGECKGKAGWFPFGYIER 371
            ++ Y+A ++ +L+   G+   +   +   W  A     G+ G+ P  Y+  
Sbjct: 5   ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 3e-09
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370
            +  Y A    E++L  G+ V V     +GW         G+FP  Y++
Sbjct: 5   AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 53

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 8e-09
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-----KGKAGWF 364
           GS+ + G    +V   Y A    +L+L+ G  +++ K   +GW +GE      K + GWF
Sbjct: 1   GSSGSSGEI-AQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWF 59

Query: 365 PFGYIE 370
           P  +++
Sbjct: 60  PASHVK 65

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (113), Expect = 3e-08
 Identities = 8/50 (16%), Positives = 19/50 (38%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371
             + + A +  EL++   D + +       W      G +G+ P   ++ 
Sbjct: 6   SKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDI 55

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (113), Expect = 4e-08
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 325 PYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIE 370
           P        L L+ GD V + +    + W EG      + GWFP   + 
Sbjct: 18  PPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 46.0 bits (109), Expect = 9e-08
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIE 370
            ++ YQ     EL L   +   +   +   W   +   G  G+ P  Y+ 
Sbjct: 3   ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 52

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 9e-08
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTN---NGWAEGECKGKAGWFPFGYIE 370
            ++P+ + ++ EL    G+ + V +        W     +G+ G  P  Y+ 
Sbjct: 11  TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVV 62

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNN-----GWAEG----------ECKGKAGWFP 365
           +  H Y A    EL L  GD V+V    N      GW  G          E +   G FP
Sbjct: 16  QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFP 75

Query: 366 FGYIER 371
             + ER
Sbjct: 76  ENFTER 81

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 322 VVHPYQAESDVELTLSVGDYV-VVRKVTNNG--WAEGECKGKAGWFPFGYIE 370
           V++ Y  + D E+T++ GD + +V + T +G      +  G+ G  P  YI 
Sbjct: 4   VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (105), Expect = 6e-07
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 322 VVHPYQA-ESDVELTLSVGDYVVV------RKVTNNGWAEGECKGKAGWFPFGYIE 370
            ++ +     ++E+ L  GD + +          ++ W      G  G+ P+ YIE
Sbjct: 10  ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 65

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 321 EVVHPYQAE-SDVELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIERRD 373
           + + P+ A  +   L+ + GD + ++     +GW  GE       GWFP  Y +   
Sbjct: 11  KTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 17/71 (23%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVTN---------------NGWAEG--ECKGKAGWF 364
            ++ Y+ E + ++ L +GD + V K +                 GW  G  E  G+ G F
Sbjct: 8   ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 67

Query: 365 PFGYIERRDRV 375
           P  Y+E   R 
Sbjct: 68  PGTYVEYIGRK 78

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 310 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGW------AEGECKGKAGW 363
           GS+ + G  +  V+  Y A  + E+ +S G+ V V  V           A        GW
Sbjct: 1   GSSGSSGSTM-TVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGW 59

Query: 364 FPFGYIE 370
            P   + 
Sbjct: 60  VPGSILA 66

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 322 VVHPYQAESDVELTLSVGDYVVVRKVT----NNGWAEGECKGKAGWFPFGYIERRDRVLA 377
               + A  D++++L  GD V V K      +      +     G+    +++  +   +
Sbjct: 22  AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRS 81

Query: 378 SKMA 381
              A
Sbjct: 82  HSDA 85

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 22/161 (13%), Positives = 57/161 (35%), Gaps = 28/161 (17%)

Query: 109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEA 168
            A    G A  ++ + + +L   +     +PL+ +       D R +        ++ E 
Sbjct: 102 PALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDK----DLREIQSALQHHLKKLE- 156

Query: 169 QLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAA 228
                      + ++   ++ +  +              + +L           + A ++
Sbjct: 157 ----------GRRLDFDYKKKRQGK------------IPDEELRQALEKFDESKEIAESS 194

Query: 229 MAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEM 269
           M  +        + +L A+V+A+  YH++ +QIL Q+   +
Sbjct: 195 MFNLLEMDIEQ-VSQLSALVQAQLEYHKQAVQILQQVTVRL 234

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 328 AESDVELTLSVGDYV-VVRKVTNNGWAEGE-CKGKAGWFPFGYIER 371
              + EL L+ G Y+ V   +  +G+ EGE   G+ G  P  +++ 
Sbjct: 34  ENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDF 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d2d4ca1	237	Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.65
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.64
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.64
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.63
d1y2oa1	248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	99.63
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.63
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.62
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.62
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.61
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.6
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.6
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.6
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.58
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.57
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.56
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.56
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.56
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.56
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.56
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.56
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.55
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.55
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	99.54
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.54
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.53
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.53
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.53
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.52
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.52
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.52
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.52
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.52
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.5
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.5
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.49
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.49
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.49
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.48
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.48
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.48
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.46
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.44
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.38
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.38
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.36
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.36
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	99.34
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.3
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.22
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.96
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	96.6
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	95.14
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	94.75
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	94.54
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	94.14

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.6e-18  Score=155.86  Aligned_cols=213  Identities=17%  Similarity=0.255  Sum_probs=160.2

Q ss_pred             HHHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCC-----------------
Q 016699           17 RQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGS-----------------   79 (384)
Q Consensus        17 ~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~-----------------   79 (384)
                      |.+|.|..++|+     +|.+-.|+    .+..+|+   ..+.++.+.++|.|.+..|+.+.+                 
T Consensus         2 R~~q~~~ek~G~-----~e~T~ld~----~f~~lEk---~~~~~~~~~~kl~k~~~~y~~~~~~~~~~~~~~~~~~~~~~   69 (237)
T d2d4ca1           2 KATQKVSEKVGG-----AEGTKLDD----DFKEMER---KVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRG   69 (237)
T ss_dssp             HHHHHHHHHHTS-----HHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHCCSGGGCSCC-----------
T ss_pred             chhHHHHhHcCC-----CCcCCCCH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHhhhcc
Confidence            788999999983     23332233    2334444   455566688888888877765421                 


Q ss_pred             -----cccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHH
Q 016699           80 -----KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARH  154 (384)
Q Consensus        80 -----~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~  154 (384)
                           ..+.....||++|..+|.+++  +++.+|.+|.+||++...|+..+.+|...+...|+.||++|++. |++.+. 
T Consensus        70 ~~~~~~~~~~~~~l~~~~~~~~~~~~--~d~~~~~~L~~~~~~~~~i~~~~~~~~~~i~~~v~~pl~~~l~~-d~~~~~-  145 (237)
T d2d4ca1          70 QEKGPGYPQAEALLAEAMLKFGRELG--DDCNFGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDK-DLREIQ-  145 (237)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHC--SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT-HHHHHH-
T ss_pred             cccccchhhhhHHHHHHHHHhcccCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-
Confidence                 112233589999999999999  99999999999999999999999999999999999999999998 777664 


Q ss_pred             HHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016699          155 LAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES  234 (384)
Q Consensus       155 ~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~  234 (384)
                        +.+++.|+.++.           .|.|+.+.+.+....     .+.+++.|+.+|+++...       ....|+.+..
T Consensus       146 --~~~~~~rk~~d~-----------~~~~~~~~~~k~~~~-----~~e~l~~a~~~~e~~~~~-------~~~~l~~l~~  200 (237)
T d2d4ca1         146 --SALQHHLKKLEG-----------RRLDFDYKKKRQGKI-----PDEELRQALEKFDESKEI-------AESSMFNLLE  200 (237)
T ss_dssp             --HHHHHHHHHHHH-----------HHHHHHHHHHHHSSC-----CHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred             --HHHHHHHHHHHH-----------HHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence              445667778888           887774333332221     345899999999998877       5566665543


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          235 QQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       235 qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      .... ++.+|..|+.||++||+.+..+|.++...|.+
T Consensus       201 ~~~~-~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~~  236 (237)
T d2d4ca1         201 MDIE-QVSQLSALVQAQLEYHKQAVQILQQVTVRLEE  236 (237)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2222 37899999999999999999999999988864

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=7.5e-17  Score=117.30  Aligned_cols=55  Identities=25%  Similarity=0.430  Sum_probs=52.7

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ..|+|+|||.+++++||+|.+||+|.|++..++|||.|+.+|+.||||++||+++
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEEc
Confidence            4699999999999999999999999999999999999999999999999999976

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.3e-16  Score=128.27  Aligned_cols=60  Identities=25%  Similarity=0.422  Sum_probs=55.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~p  376 (384)
                      ..+|+|||||++++++||+|.+||+|.|+...++|||.|+++|+.||||+|||+.+.+.+
T Consensus        34 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~~~~   93 (98)
T d1udla_          34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCCS
T ss_pred             ccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHHEEECCCCC
Confidence            457999999999999999999999999999999999999999999999999999987543

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.64  E-value=1.6e-16  Score=115.98  Aligned_cols=55  Identities=20%  Similarity=0.436  Sum_probs=52.8

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ..|+|||||.+++++||+|.+||+|.|+...++|||.|+++|+.||||++||+++
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEEEC
Confidence            5799999999999999999999999999999999999999999999999999965

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.8e-16  Score=114.80  Aligned_cols=54  Identities=26%  Similarity=0.621  Sum_probs=51.7

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      .|+|||||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus         3 yv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           3 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEEC
Confidence            589999999999999999999999999998999999999999999999999864

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.9e-14  Score=131.70  Aligned_cols=179  Identities=11%  Similarity=0.098  Sum_probs=125.5

Q ss_pred             hhHHHHHHHHhhccCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHH
Q 016699           85 GTKLSEDSRKYGSDNT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR  163 (384)
Q Consensus        85 ~~~l~~~m~~~g~e~~-~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r  163 (384)
                      ...++++|.++|.... ...+..+|.+|+++|++++.|+..++.|...+..+|+.||..++++ |++.+.+.+|+|++.+
T Consensus        49 ~~~f~dal~~~~~~~~~~~~~~~ig~~L~~~~~~~~~i~~~~~~l~~~~~~~~i~PL~~~~~~-d~k~i~~~kK~~~k~~  127 (248)
T d1y2oa1          49 AKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVEL-DSRYLSAALKKYQTEQ  127 (248)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            3479999999986422 1245679999999999999999999999999999999999999999 9999998888887766


Q ss_pred             HHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016699          164 QEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR  243 (384)
Q Consensus       164 ~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~  243 (384)
                      +.+..-+      .+ .+-++++.++|.+..........+...+.+-+...+..+..+..++.......+..+..+.+.+
T Consensus       128 k~~~~~l------~K-~~~~~~k~~kk~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~eerkr~~~lv~~  200 (248)
T d1y2oa1         128 RSKGDAL------DK-CQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEK  200 (248)
T ss_dssp             HHHHHHH------HH-HHHHHHHHHHHHHTSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH------HH-HHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554300      00 1113333333333222223334455555555555554444443444333323344455556899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          244 LIAMVEAERTYHQRVLQILDQLEGEMLS  271 (384)
Q Consensus       244 L~a~veAql~Yh~q~~~iL~qL~~eL~~  271 (384)
                      |++|++++.+||.+++.+++++...+.+
T Consensus       201 l~~~~~a~~~~~~q~~~~l~~~~~~~~~  228 (248)
T d1y2oa1         201 QCAVAKNSAAYHSKGKELLAQKLPLWQQ  228 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999999998886

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.9e-16  Score=115.54  Aligned_cols=54  Identities=24%  Similarity=0.444  Sum_probs=51.7

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeee
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER  371 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~  371 (384)
                      ++|+|+|||.++.++||+|.+||+|.|++..++|||.|+++|+.||||++||+.
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEee
Confidence            579999999999999999999999999999999999999999999999999973

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=3e-16  Score=113.20  Aligned_cols=54  Identities=28%  Similarity=0.497  Sum_probs=51.5

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      .++|+|||+++.++||+|.+||+|.|++..++|||.|+++|+.||||+|||+.+
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEEC
Confidence            478999999999999999999999999999999999999999999999999864

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=3e-16  Score=114.40  Aligned_cols=55  Identities=27%  Similarity=0.449  Sum_probs=52.1

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l  372 (384)
                      |.|+|+|||.+..++||+|.+||+|.|++..++|||.|++  +|+.||||+|||+.+
T Consensus         1 P~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            4699999999999999999999999999999999999997  789999999999976

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.1e-16  Score=115.90  Aligned_cols=56  Identities=34%  Similarity=0.557  Sum_probs=52.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ...++|||+|.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+..
T Consensus         5 g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEEC
Confidence            35699999999999999999999999999999999999999999999999999865

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=5.1e-16  Score=113.21  Aligned_cols=55  Identities=25%  Similarity=0.506  Sum_probs=51.0

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEeCCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      |+|+|+|||.+++++||+|.+||+|.|++..  +.|||.|.++|+.||||.+||+.+
T Consensus         2 P~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           2 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CeEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            5799999999999999999999999999885  458999999999999999999875

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.6e-16  Score=120.94  Aligned_cols=60  Identities=27%  Similarity=0.635  Sum_probs=55.5

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ....++|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+...
T Consensus         9 ~~~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i~~~   68 (76)
T d1ujya_           9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSS   68 (76)
T ss_dssp             CCEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCHH
T ss_pred             CCEEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEECCCC
Confidence            345799999999999999999999999999999999999999999999999999988643

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.8e-16  Score=117.67  Aligned_cols=59  Identities=25%  Similarity=0.491  Sum_probs=54.0

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ...+|+|||||.+..++||+|.+||+|.|++. +++||.|+++|+.||||.|||+.+...
T Consensus         9 ~~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yve~i~~~   67 (74)
T d1j3ta_           9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CCeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhEEECCCC
Confidence            34679999999999999999999999999987 568999999999999999999998654

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3e-16  Score=114.40  Aligned_cols=56  Identities=32%  Similarity=0.552  Sum_probs=52.9

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ..++|+|||.+.+++||+|++||+|.|++..++|||.|+++|+.||||++||+.++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~ld   58 (58)
T d1ng2a1           3 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD   58 (58)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSS
T ss_pred             eEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEECc
Confidence            46899999999999999999999999999999999999999999999999998763

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.6e-15  Score=117.30  Aligned_cols=62  Identities=24%  Similarity=0.378  Sum_probs=56.0

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec----CCCeeEEEeCCeeeEecCCCeeeccCCCch
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT----NNGWAEGECKGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~----d~gW~~G~~~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      ...++|||||.+..++||+|.+||+|.|++..    ++|||.|+++|+.||||.+||+.+.+.|.+
T Consensus        13 ~~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~~pss   78 (79)
T d1uhca_          13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPSS   78 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSSCCC
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCCCCCC
Confidence            44689999999999999999999999999864    468999999999999999999999877754

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-15  Score=108.74  Aligned_cols=51  Identities=25%  Similarity=0.370  Sum_probs=49.2

Q ss_pred             eEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCee
Q 016699          320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE  370 (384)
Q Consensus       320 a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe  370 (384)
                      ..|+|+|.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+
T Consensus         3 yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           3 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             EEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            479999999999999999999999999999999999999999999999996

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.3e-15  Score=115.85  Aligned_cols=59  Identities=27%  Similarity=0.457  Sum_probs=53.2

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ..+|+|||||++.+++||+|.+||+|.|++.. +++||.|+++|+.||||.|||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~p   69 (72)
T d1ugva_          10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             CEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCCC
Confidence            35699999999999999999999999998875 457999999999999999999998654

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.5e-15  Score=114.44  Aligned_cols=62  Identities=24%  Similarity=0.426  Sum_probs=55.6

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCch
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLAS  378 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa~  378 (384)
                      ....++|+|||.+..++||+|.+||+|.|++. +++||.|+++|+.||||.+||+.+...|.+
T Consensus         7 ~~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~g~~G~vP~~yv~~~~~~pss   68 (69)
T d1uhfa_           7 GGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPSS   68 (69)
T ss_dssp             CSEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCCCCC
T ss_pred             CCcEEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCEEEEEECCcEEEEchhhEEECCCCCCC
Confidence            34678999999999999999999999999987 468999999999999999999998776654

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.1e-15  Score=123.95  Aligned_cols=56  Identities=23%  Similarity=0.316  Sum_probs=53.2

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  373 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~  373 (384)
                      ..++|||||.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+.
T Consensus        15 ~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~   70 (118)
T d1ng2a2          15 EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSG   70 (118)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETT
T ss_pred             cEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEECC
Confidence            46789999999999999999999999999999999999999999999999999874

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.3e-15  Score=111.71  Aligned_cols=55  Identities=24%  Similarity=0.486  Sum_probs=51.5

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l  372 (384)
                      ..++|+|||.+.+++||+|.+||+|.|+...++|||.|.+  +|+.||||+|||+.+
T Consensus         4 ~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           4 KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             cEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            4589999999999999999999999999999999999998  789999999999875

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.3e-15  Score=110.19  Aligned_cols=53  Identities=30%  Similarity=0.509  Sum_probs=45.6

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEee-cCCCeeEEEeCCeeeEecCCCeee
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIER  371 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~-~d~gW~~G~~~G~~G~fP~~YVe~  371 (384)
                      .|+|+|||.+.+++||+|.+||+|.|+.. .+++||.|+++|+.||||+|||+.
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEEE
Confidence            58999999999999999999999998876 467899999999999999999975

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.2e-15  Score=112.59  Aligned_cols=61  Identities=18%  Similarity=0.348  Sum_probs=54.3

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEe-CCeeeEecCCCeeeccCCCc
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGEC-KGKAGWFPFGYIERRDRVLA  377 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~-~G~~G~fP~~YVe~l~~~pa  377 (384)
                      ...|+|||||.++.++||+|.+||+|.|+...  ++|||.|+. +|+.||||.|||+.+...|+
T Consensus         6 l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~~p~   69 (71)
T d1u5sa1           6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPA   69 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSCC
T ss_pred             cEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCCCCC
Confidence            45799999999999999999999999999874  348999986 89999999999999977654

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.2e-15  Score=114.44  Aligned_cols=60  Identities=25%  Similarity=0.513  Sum_probs=53.9

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeC-----CeeeEecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-----GKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~-----G~~G~fP~~YVe~l~~~p  376 (384)
                      ...|+|||||++.+++||+|.+||+|.|+...++|||.|++.     |+.||||.+||+.+.+.+
T Consensus         7 g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~~   71 (80)
T d1ue9a_           7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSS   71 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSCC
T ss_pred             CCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCCC
Confidence            357999999999999999999999999999999999999863     468999999999986543

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=1.8e-15  Score=113.46  Aligned_cols=56  Identities=21%  Similarity=0.492  Sum_probs=49.6

Q ss_pred             cceeEeeccCCCCCC-CCcccCCCCEEEEEeecC-----CCeeEEEe-CCeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQAESD-VELTLSVGDYVVVRKVTN-----NGWAEGEC-KGKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a~~~-~ELsf~~GdiI~V~~~~d-----~gW~~G~~-~G~~G~fP~~YVe~l  372 (384)
                      ...|+|||||.+.++ .||+|.+||+|.|+++.+     +|||.|+. +|+.||||+|||+.+
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            457999999999876 499999999999998754     58999987 899999999999875

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.7e-15  Score=108.94  Aligned_cols=53  Identities=23%  Similarity=0.532  Sum_probs=50.4

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeee
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIER  371 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~  371 (384)
                      .++|+|||.++++++|+|.+||+|.|+...++|||.|+. +|+.||||++||+.
T Consensus         3 ~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            589999999999999999999999999999999999987 78999999999985

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.6e-13  Score=120.99  Aligned_cols=192  Identities=14%  Similarity=0.161  Sum_probs=146.5

Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 016699           50 LERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLL  129 (384)
Q Consensus        50 ~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~  129 (384)
                      ||......+.+..+.++|++.++.|......-......||.++...|...+     +.+.++..+|++.+.|+.....+.
T Consensus         8 ~e~~~~~l~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~   82 (200)
T d1i4da_           8 LELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP-----ELQEEFGYNAETQKLLCKNGETLL   82 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCG-----GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445566677788888888766544444444578888888887654     579999999999999999999988


Q ss_pred             HHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHH
Q 016699          130 KALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEV  209 (384)
Q Consensus       130 ~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~  209 (384)
                      ..+.. ++.||.+++.. +++++++..++|++.|.+.+.           .+.++.+.+.+.+.    .....++..|+.
T Consensus        83 ~~~~~-~~~~l~~~~~~-~~~~~~~~~kk~~~~~~dyd~-----------~~~k~~~~~~~~~~----~~~~~kl~~ae~  145 (200)
T d1i4da_          83 GAVNF-FVSSINTLVTK-TMEDTLMTVKQYEAARLEYDA-----------YRTDLEELSLGPRD----AGTRGRLESAQA  145 (200)
T ss_dssp             HHHHH-HHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHC----------------CHHHH
T ss_pred             HHHHH-HHhhHHHHHHH-HHHHHHHHHHHHHHHhHHHHH-----------HHHHHHHHhhcccc----cchhhhHHHHHH
Confidence            77754 56777788888 899999999999999999999           77666444333211    112347888999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          210 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD  263 (384)
Q Consensus       210 k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~  263 (384)
                      +++++++.+..++.+....|..++..+....+.+|.+|++++..||.+|+..|+
T Consensus       146 ~~~~a~~~fe~~~~~~~~~l~~l~~~r~~~~~~~l~~~~~~~~~f~~~~~~~le  199 (200)
T d1i4da_         146 TFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLE  199 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999888999999888877788889999999999999999999875

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=4.1e-15  Score=112.98  Aligned_cols=58  Identities=24%  Similarity=0.449  Sum_probs=50.4

Q ss_pred             ceeEeeccCCCC-CCCCcccCCCCEEEEEee-cCCCeeEEEe--CCeeeEecCCCeeeccCC
Q 016699          318 FLGEVVHPYQAE-SDVELTLSVGDYVVVRKV-TNNGWAEGEC--KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       318 ~~a~alydy~a~-~~~ELsf~~GdiI~V~~~-~d~gW~~G~~--~G~~G~fP~~YVe~l~~~  375 (384)
                      .+|+|||||++. +++||+|.+||+|.|+.. .++|||.|++  +|+.||||+|||+.+...
T Consensus         8 ~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~p   69 (72)
T d1spka_           8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             CEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCCC
Confidence            579999999985 678999999999999865 5678999997  589999999999998653

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.53  E-value=3.5e-15  Score=106.74  Aligned_cols=52  Identities=19%  Similarity=0.305  Sum_probs=48.7

Q ss_pred             eEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeee
Q 016699          320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIER  371 (384)
Q Consensus       320 a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~  371 (384)
                      +.|+|||.+..++||+|.+||+|.|++..++|||.|+. +|+.||||+|||+.
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            57999999999999999999999999999999999985 88999999999973

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=6.6e-15  Score=110.23  Aligned_cols=57  Identities=18%  Similarity=0.349  Sum_probs=52.7

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccCC
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~~  375 (384)
                      .++|||||.+.+++||+|.+||+|.|+...+.+||.|.. +|+.||||++||+.+.+.
T Consensus         4 ~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~~   61 (67)
T d1gl5a_           4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN   61 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTTT
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecCC
Confidence            589999999999999999999999999999999999986 789999999999987554

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.9e-15  Score=109.70  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=50.6

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecC---CCeeEEEeCCeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN---NGWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d---~gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      ...|+|+|||.+++++||+|.+||+|.|++..+   .|||.|+.+|+.||||+|||+.+
T Consensus         4 ~g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           4 KGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             GGEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             CCEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeC
Confidence            346899999999999999999999999998753   47999999999999999999865

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.4e-15  Score=115.28  Aligned_cols=60  Identities=23%  Similarity=0.373  Sum_probs=52.9

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccCC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~~  375 (384)
                      ....|+|||+|++.+++||+|.+||+|.|++..++|||.|++ ++..||||+|||+.+.+.
T Consensus         5 ~~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~   65 (71)
T d2hspa_           5 FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SSSCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCC
T ss_pred             CcEEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCc
Confidence            345699999999999999999999999999999999999988 455569999999988654

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=4.9e-15  Score=108.22  Aligned_cols=56  Identities=14%  Similarity=0.236  Sum_probs=50.6

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~  374 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|++.. ++||.+.. +|+.||||+|||+.+.+
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            4699999999999999999999999999875 57999876 89999999999998754

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=8.1e-15  Score=106.35  Aligned_cols=54  Identities=28%  Similarity=0.500  Sum_probs=49.2

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeecCC-CeeEEEeCCeeeEecCCCeeec
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNN-GWAEGECKGKAGWFPFGYIERR  372 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~-gW~~G~~~G~~G~fP~~YVe~l  372 (384)
                      .+.|||||.+..++||+|.+||+|.|++..++ +||.|+.+|+.||||++||+.+
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEEC
Confidence            47899999999999999999999999988655 5888999999999999999976

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.6e-15  Score=112.53  Aligned_cols=59  Identities=19%  Similarity=0.317  Sum_probs=53.8

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccC
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~  374 (384)
                      ...+++|+|||.+.+++||+|.+||+|.|+...+.+||.|.. +|+.||||++||+.+.+
T Consensus         7 ~~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           7 ELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CCEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECcC
Confidence            346799999999999999999999999999998999999986 88999999999987653

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.4e-15  Score=116.22  Aligned_cols=59  Identities=29%  Similarity=0.609  Sum_probs=53.1

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ..+++|||||.+++++||+|.+||+|.|+.+.  +.+||.|+++|+.||||+|||+.+.+.
T Consensus         5 ~~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~~~   65 (93)
T d1uffa_           5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECCCC
Confidence            34689999999999999999999999999775  567999999999999999999988543

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1e-14  Score=110.42  Aligned_cols=59  Identities=20%  Similarity=0.438  Sum_probs=52.4

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEe-CCeeeEecCCCeeeccCCC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGEC-KGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~-~G~~G~fP~~YVe~l~~~p  376 (384)
                      ..|+|+|||.+.+++||+|.+||+|.|+... +++||.|+. .|+.||||.|||+.+....
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~~~   67 (71)
T d1k9aa1           7 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK   67 (71)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCCC
T ss_pred             CEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEcccCC
Confidence            4699999999999999999999999999875 667999987 6899999999999886543

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.8e-14  Score=109.84  Aligned_cols=60  Identities=20%  Similarity=0.175  Sum_probs=54.0

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe------CCeeeEecCCCeeeccCCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC------KGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~------~G~~G~fP~~YVe~l~~~p  376 (384)
                      ...++|||||.+..++||+|.+||+|.|++..++|||.++.      +|+.||||.|||+.+....
T Consensus         7 g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~ps   72 (74)
T d1wfwa_           7 GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSGPS   72 (74)
T ss_dssp             SCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCSTT
T ss_pred             CCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCCCC
Confidence            35799999999999999999999999999999999999986      3689999999999886543

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-14  Score=107.90  Aligned_cols=57  Identities=18%  Similarity=0.455  Sum_probs=52.4

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccCC
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~~  375 (384)
                      ..+|+|||++.+++||+|.+||+|.|++..++|||.|+.  +|+.||||.+||+.+..+
T Consensus         4 ~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s~   62 (64)
T d1fmka1           4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI   62 (64)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             EEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECccC
Confidence            468999999999999999999999999998999999987  689999999999987654

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.6e-14  Score=115.56  Aligned_cols=61  Identities=25%  Similarity=0.395  Sum_probs=51.2

Q ss_pred             CcceeEeeccCCCCC------CCCcccCCCCEEEEEeec-CCCeeEEEe-CCeeeEecCCCeeeccCCC
Q 016699          316 GYFLGEVVHPYQAES------DVELTLSVGDYVVVRKVT-NNGWAEGEC-KGKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       316 ~~~~a~alydy~a~~------~~ELsf~~GdiI~V~~~~-d~gW~~G~~-~G~~G~fP~~YVe~l~~~p  376 (384)
                      ....|+|+|||++.+      ++||+|++||+|.|+... ++|||.|.. +|+.||||+|||+.+...+
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~~   84 (96)
T d1wiea_          16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNE   84 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCC
T ss_pred             CceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCcc
Confidence            456899999998754      589999999999999775 456999976 8999999999999886443

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2e-14  Score=104.11  Aligned_cols=54  Identities=20%  Similarity=0.450  Sum_probs=50.1

Q ss_pred             eeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeec
Q 016699          319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  372 (384)
Q Consensus       319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l  372 (384)
                      .++|+|||++.+++||+|++||+|.|+...++|||.+++  +|+.||||+|||+++
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            367999999999999999999999999999999999987  889999999999864

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=1.3e-14  Score=113.16  Aligned_cols=58  Identities=33%  Similarity=0.480  Sum_probs=50.8

Q ss_pred             CcceeEeeccCCCCCCCCcccCCCCEEEEEeec-----CCCeeEEEe----------CCeeeEecCCCeeecc
Q 016699          316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-----NNGWAEGEC----------KGKAGWFPFGYIERRD  373 (384)
Q Consensus       316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-----d~gW~~G~~----------~G~~G~fP~~YVe~l~  373 (384)
                      ...+|+|+|+|++.+++||+|.+||+|.|+...     ++|||.|..          +|+.||||+|||+.++
T Consensus        11 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~ie   83 (83)
T d1bb9a_          11 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ   83 (83)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             CCEEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEcC
Confidence            456799999999999999999999999999864     468999975          3678999999999863

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.9e-15  Score=115.07  Aligned_cols=57  Identities=30%  Similarity=0.547  Sum_probs=51.4

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeec---------------CCCeeEEEe--CCeeeEecCCCeeeccC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT---------------NNGWAEGEC--KGKAGWFPFGYIERRDR  374 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~---------------d~gW~~G~~--~G~~G~fP~~YVe~l~~  374 (384)
                      ..++|||+|.+..++||+|.+||+|.|+...               ++|||.|++  +|+.||||.|||+.+.+
T Consensus         4 ~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~   77 (83)
T d1phta_           4 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   77 (83)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCC
Confidence            5799999999999999999999999999752               468999987  89999999999999864

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.6e-14  Score=113.53  Aligned_cols=58  Identities=17%  Similarity=0.160  Sum_probs=53.1

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecC----CCeeEEEeCCeeeEecCCCeeeccCC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTN----NGWAEGECKGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d----~gW~~G~~~G~~G~fP~~YVe~l~~~  375 (384)
                      ..++|+|+|++..++||+|.+||+|.|+++.|    .|||.++++|+.||||+|||+.+.+.
T Consensus        18 ~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~~   79 (92)
T d1ug1a_          18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPR   79 (92)
T ss_dssp             GEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCC
T ss_pred             eEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCCc
Confidence            46899999999999999999999999999853    68999999999999999999988654

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.8e-14  Score=105.30  Aligned_cols=58  Identities=24%  Similarity=0.458  Sum_probs=51.2

Q ss_pred             cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccCC
Q 016699          317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  375 (384)
Q Consensus       317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~~  375 (384)
                      ...++|||||.+++++||+|.+||+|.|++. +++||.+.+  +|+.||||+|||+.+..+
T Consensus         4 ~~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~~~~   63 (65)
T d1qcfa1           4 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSL   63 (65)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTCG
T ss_pred             cEEEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEECccC
Confidence            4568999999999999999999999999985 567888876  789999999999988654

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=2.8e-14  Score=102.94  Aligned_cols=52  Identities=27%  Similarity=0.522  Sum_probs=45.6

Q ss_pred             eEeeccCCCCCCCCcccCCCCEEEEEeecCC-CeeEEEe--CCeeeEecCCCeee
Q 016699          320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNN-GWAEGEC--KGKAGWFPFGYIER  371 (384)
Q Consensus       320 a~alydy~a~~~~ELsf~~GdiI~V~~~~d~-gW~~G~~--~G~~G~fP~~YVe~  371 (384)
                      ++|||||.+++++||+|.+||+|.|++..+. +||.+..  +|+.||||+|||++
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            7999999999999999999999999988654 5666554  79999999999974

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=7.1e-14  Score=105.15  Aligned_cols=56  Identities=29%  Similarity=0.469  Sum_probs=48.5

Q ss_pred             cceeEeeccCCC------CCCCCcccCCCCEEEEEee-cCCCeeEEEe--CCeeeEecCCCeeec
Q 016699          317 YFLGEVVHPYQA------ESDVELTLSVGDYVVVRKV-TNNGWAEGEC--KGKAGWFPFGYIERR  372 (384)
Q Consensus       317 ~~~a~alydy~a------~~~~ELsf~~GdiI~V~~~-~d~gW~~G~~--~G~~G~fP~~YVe~l  372 (384)
                      .++++|+++|.+      .+++||+|.+||+|.|++. .++|||.|++  +|+.||||+|||+..
T Consensus         4 ~Pk~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           4 MPKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             CCEEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CCcEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            456888888765      7889999999999999975 5679999997  799999999999975

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.8e-13  Score=99.57  Aligned_cols=53  Identities=21%  Similarity=0.560  Sum_probs=46.9

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeee
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIER  371 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~  371 (384)
                      ..++|+|||.+..++||+|.+||+|.|+...+ +||.+..  +|+.||||+|||+.
T Consensus         7 ~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            46999999999999999999999999998764 5777665  78999999999974

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.38  E-value=1.6e-13  Score=109.39  Aligned_cols=53  Identities=21%  Similarity=0.359  Sum_probs=49.2

Q ss_pred             cceeEeeccCCCCCCCC-------cccCCCCEEEEEeecCCCeeEEEe---CCeeeEecCCCe
Q 016699          317 YFLGEVVHPYQAESDVE-------LTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYI  369 (384)
Q Consensus       317 ~~~a~alydy~a~~~~E-------Lsf~~GdiI~V~~~~d~gW~~G~~---~G~~G~fP~~YV  369 (384)
                      .+.|+|+|||++..+++       |+|.+||+|.|++..++|||.|++   +|..||||++|+
T Consensus        21 ~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          21 AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            46799999999999998       999999999999999999999998   688999999874

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=5.3e-14  Score=112.28  Aligned_cols=55  Identities=18%  Similarity=0.343  Sum_probs=48.8

Q ss_pred             ceeEeeccCCCCC-----CCCcccCCCCEEEEEeecCCCeeEEEe------CCeeeEecCCCeeec
Q 016699          318 FLGEVVHPYQAES-----DVELTLSVGDYVVVRKVTNNGWAEGEC------KGKAGWFPFGYIERR  372 (384)
Q Consensus       318 ~~a~alydy~a~~-----~~ELsf~~GdiI~V~~~~d~gW~~G~~------~G~~G~fP~~YVe~l  372 (384)
                      +.++|+|||++..     ..||+|++||+|.|+...++|||.|+.      +|+.||||+|||+..
T Consensus         2 ~~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~   67 (96)
T d1kjwa1           2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (96)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeee
Confidence            5689999999876     458999999999999999999999975      678999999999753

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.7e-13  Score=110.31  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=51.3

Q ss_pred             ceeEeeccCCCCCCCCcccCCCCEEEEEee---cCCCeeEEEeC--------CeeeEecCCCeeeccCCC
Q 016699          318 FLGEVVHPYQAESDVELTLSVGDYVVVRKV---TNNGWAEGECK--------GKAGWFPFGYIERRDRVL  376 (384)
Q Consensus       318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~---~d~gW~~G~~~--------G~~G~fP~~YVe~l~~~p  376 (384)
                      ..|+|+|||.+.+++||+|++||+|.|+++   .+.+||.|...        |+.||||+|||+.+....
T Consensus        22 ~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~~   91 (106)
T d1i1ja_          22 SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLK   91 (106)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECS
T ss_pred             eEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEccccC
Confidence            469999999999999999999999999987   45789999864        468999999999876443

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.34  E-value=3.4e-11  Score=107.06  Aligned_cols=208  Identities=15%  Similarity=0.180  Sum_probs=147.3

Q ss_pred             CCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHH
Q 016699           31 YGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKA  110 (384)
Q Consensus        31 ~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~a  110 (384)
                      .|-+|.++ ||.       ||.+....+......+.|.+.++.|+............+++++...+...+        .+
T Consensus         3 ~G~~~~T~-D~~-------fe~~~~~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--------~~   66 (217)
T d1urua_           3 LGKVDRTA-DEI-------FDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQW--------SG   66 (217)
T ss_dssp             SSCTTCCH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS--------TT
T ss_pred             CCCCCCcc-cHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------ch
Confidence            34567776 552       333334444444566667777777765544445555578888888876665        23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhh
Q 016699          111 ALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAK  190 (384)
Q Consensus       111 l~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k  190 (384)
                      .-.+..+...++....++...+...|++||+.++..  ++.+++..+++++.+...+.           -+-.+.+...|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~pL~~~~~~--~~~~~~~~kkr~~~~~dyd~-----------~~~~l~k~~~k  133 (217)
T d1urua_          67 YDALQAQTGASESLWADFAHKLGDQVLIPLNTYTGQ--FPEMKKKVEKRNRKLIDYDG-----------QRHSFQNLQAN  133 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhc
Confidence            445666777788888999999999999999999984  89999777777777777776           44444332222


Q ss_pred             hccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          191 VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEML  270 (384)
Q Consensus       191 ~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~  270 (384)
                      ...    .....++..++.+++.++..+..++.+....|..++..........|..|+.++..||.++..++.++...|.
T Consensus       134 ~~~----~~~~~~l~~~e~~~~~a~~~fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~  209 (217)
T d1urua_         134 ANK----RKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVD  209 (217)
T ss_dssp             TCB----TTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc----ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111    1122356667777777777777777778888888877777777889999999999999999999999998776


Q ss_pred             H
Q 016699          271 S  271 (384)
Q Consensus       271 ~  271 (384)
                      +
T Consensus       210 ~  210 (217)
T d1urua_         210 K  210 (217)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.3e-11  Score=111.74  Aligned_cols=194  Identities=9%  Similarity=0.075  Sum_probs=136.4

Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCC--CCCChhHHHHHHHHHHHHHHHHHHHH
Q 016699           50 LERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC--TSGNTLSKAALSYGRARAQMEKERGN  127 (384)
Q Consensus        50 ~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~--~~~~~~g~al~~~g~a~~~l~~~~~~  127 (384)
                      +..+-...+..+.|.+++++.+..+...+.........+.+.+..++.....  ..+..+|.+|.++|++.+.|...+..
T Consensus        18 l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~L~~~~~~~~~~~~dd~~~~~~l~~f~~~~~el~~~~~~   97 (268)
T d2elba1          18 LGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAV   97 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455666777999999988887765443333334678888888875431  24567899999999999999999999


Q ss_pred             HHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHH
Q 016699          128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAA  207 (384)
Q Consensus       128 ~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~a  207 (384)
                      ++..+...++.||..|+.+ |++.++..+|+|++.+.++++           -.-.+.+..++++.+       .....+
T Consensus        98 l~~~~~~~~~~pL~~f~~~-di~~~ke~kk~fek~~~~yd~-----------~l~k~~~~~k~k~~~-------~~~~Ea  158 (268)
T d2elba1          98 LSTQLADAMMFPITQFKER-DLKEILTLKEVFQIASNDHDA-----------AINRYSRLSKKREND-------KVKYEV  158 (268)
T ss_dssp             HHHHHHHHTHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHTCCCC------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhcccCCcc-------hhhhhH
Confidence            9999999999999999999 999999999999999999999           332222111111111       122234


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          208 EVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL  262 (384)
Q Consensus       208 e~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL  262 (384)
                      +..+..++..+.....+....+..++.+.....+..+++|+.++.+||+++..++
T Consensus       159 ~~~l~~~r~~f~~~~~d~~~~l~~l~~~k~~~~l~~l~~~~~a~~~ff~~~~~~l  213 (268)
T d2elba1         159 TEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENL  213 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555544444444455555566655555668999999999999999998875

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=3.6e-12  Score=109.07  Aligned_cols=53  Identities=19%  Similarity=0.349  Sum_probs=49.1

Q ss_pred             cceeEeeccCCCCCCCC-------cccCCCCEEEEEeecCCCeeEEEe---CCeeeEecCCCe
Q 016699          317 YFLGEVVHPYQAESDVE-------LTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYI  369 (384)
Q Consensus       317 ~~~a~alydy~a~~~~E-------Lsf~~GdiI~V~~~~d~gW~~G~~---~G~~G~fP~~YV  369 (384)
                      .++|+|+|||++.++++       |+|.+||+|.|++..++|||.|++   +|..||||++|+
T Consensus        23 ~f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~   85 (145)
T d1vyva1          23 AFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLR   85 (145)
T ss_dssp             CEEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchh
Confidence            35799999999999998       999999999999999999999997   789999999875

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=1.4e-10  Score=97.88  Aligned_cols=53  Identities=19%  Similarity=0.312  Sum_probs=48.1

Q ss_pred             cceeEeeccCCCCCCCC-------cccCCCCEEEEEeecCCCeeEEEe---CCeeeEecCCCe
Q 016699          317 YFLGEVVHPYQAESDVE-------LTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYI  369 (384)
Q Consensus       317 ~~~a~alydy~a~~~~E-------Lsf~~GdiI~V~~~~d~gW~~G~~---~G~~G~fP~~YV  369 (384)
                      .+.++|+|||++..+++       |+|..||+|.|++..|++||.|++   +|..||||++|+
T Consensus        23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          23 AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             CEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             eEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            46799999999988887       899999999999999999999997   678899999884

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.2  Score=43.71  Aligned_cols=94  Identities=14%  Similarity=0.035  Sum_probs=57.6

Q ss_pred             HHHHHHHHhhhhhhhHHHHhhhhcccc--cCCCcccchhhHHHHHHH---HhhccCCCCCCChhHHHHHHHHHHHHHHHH
Q 016699           49 RLERLYISTRAGKHFQRDIVRGVEGYI--VTGSKQVEIGTKLSEDSR---KYGSDNTCTSGNTLSKAALSYGRARAQMEK  123 (384)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~--~~~~~~~e~~~~l~~~m~---~~g~e~~~~~~~~~g~al~~~g~a~~~l~~  123 (384)
                      +||.|...++.+..+.+.|..-..---  ...|.+  ...+|+.-+.   .-..+..  ....+..++..+-+....++.
T Consensus         1 q~~~l~~~~~~g~~~~~~~~~~~~eRa~iE~~Yak--~L~kL~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~a~   76 (279)
T d2efka1           1 QFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAK--QLRSLVKKYLPKRPAKDDPE--SKFSQQQSFVQILQEVNDFAG   76 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCC-------C--TTSHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhccccccCc--ccchHHHHHHHHHHHHHHHHH
Confidence            467777777777777777665433100  001110  1112332211   0011111  234577788899999999999


Q ss_pred             HHHHHHHHHhhhhchHHHHHhcC
Q 016699          124 ERGNLLKALGTQVAEPLRAMVLG  146 (384)
Q Consensus       124 ~~~~~~~~~~~~~l~PL~~~~~~  146 (384)
                      ....+...+...++.||..++..
T Consensus        77 ~~~~~~~~l~~~i~~~l~~~~~~   99 (279)
T d2efka1          77 QRELVAENLSVRVCLELTKYSQE   99 (279)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.01  Score=43.71  Aligned_cols=40  Identities=20%  Similarity=0.304  Sum_probs=36.3

Q ss_pred             CCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCe
Q 016699          330 SDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYI  369 (384)
Q Consensus       330 ~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YV  369 (384)
                      ..-+|++++||.|.|+...+.|=|.|+. .|+.|+||.++|
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            4568999999999999999999999998 999999998876

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.4  Score=39.51  Aligned_cols=95  Identities=12%  Similarity=0.148  Sum_probs=55.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHH
Q 016699          106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVS  185 (384)
Q Consensus       106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~k  185 (384)
                      .+|.++..++.....+-.....++..+..-+...+....+-  ++..-+....||+.|..++.           .+  -+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~kk~~~~~~dyd~~~~k~~~-----------~~--~~  130 (200)
T d1i4da_          66 YNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMT--VKQYEAARLEYDAYRTDLEE-----------LS--LG  130 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-----------HC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHH-----------Hh--hc
Confidence            47778877877777666666666665555555544444332  22222566679999999987           22  11


Q ss_pred             HHhhhhccCCCCCchHHhHHHHHHHHHHHHHH
Q 016699          186 KRQAKVRETPGNPDLALKLDAAEVKLHDLKSN  217 (384)
Q Consensus       186 kr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~  217 (384)
                      ++..+  ....-.+++.+++.++.+|+.+...
T Consensus       131 ~~~~~--~~~kl~~ae~~~~~a~~~fe~~~~~  160 (200)
T d1i4da_         131 PRDAG--TRGRLESAQATFQAHRDKYEKLRGD  160 (200)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccc--hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            22222  2223455678999999999987654

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=1.3  Score=38.28  Aligned_cols=96  Identities=16%  Similarity=0.150  Sum_probs=61.0

Q ss_pred             HHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCC----CCCChhHHHHHHHHHHHHHHHH
Q 016699           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC----TSGNTLSKAALSYGRARAQMEK  123 (384)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~----~~~~~~g~al~~~g~a~~~l~~  123 (384)
                      .++|.|..+++.+..+.+.|..-..--.   ..--+-+..|..-+.+|......    ...+.+..++..+-+....++.
T Consensus         9 d~~~~l~~~~~~~~~~~~~~~~~~~eRa---~iE~eYak~L~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   85 (288)
T d2efla1           9 DQFDNLEKHTQWGIDILEKYIKFVKERT---EIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAG   85 (288)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTSCC-------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccccCcHHHHHHHHHHHHHHHHH
Confidence            3677888888877777777665543210   00011112233333344321110    1234566788888888899999


Q ss_pred             HHHHHHHHHhhhhchHHHHHhcC
Q 016699          124 ERGNLLKALGTQVAEPLRAMVLG  146 (384)
Q Consensus       124 ~~~~~~~~~~~~~l~PL~~~~~~  146 (384)
                      ....+...+...+++||..++..
T Consensus        86 ~h~~~a~~l~~~i~~~l~~~~~~  108 (288)
T d2efla1          86 QHEVISENMASQIIVDLARYVQE  108 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998773

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.14  E-value=1.3  Score=36.71  Aligned_cols=96  Identities=13%  Similarity=0.103  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHH----HHHhHHHHHHHH
Q 016699          154 HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN----MAILGKEAAAAM  229 (384)
Q Consensus       154 ~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~----~~~L~~e~~~~~  229 (384)
                      .....|++.+..++.               +.++..+.++...-.+.+.++..|..+|+.....    +..+.......+
T Consensus       115 ~~~~dyd~~~~~l~k---------------~~~k~~~~~~~~~l~~~e~~~~~a~~~fe~~~~~l~~el~~~~~~~~~~~  179 (217)
T d1urua_         115 RKLIDYDGQRHSFQN---------------LQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFL  179 (217)
T ss_dssp             HHHHHHHHHHHHHHH---------------HHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH---------------HHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666779999999998               3234444455555666788999999999988765    233322222111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699          230 AAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE  268 (384)
Q Consensus       230 ~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~e  268 (384)
                         ... -..++.....|...-...+..+...|++|..+
T Consensus       180 ---~~~-l~~~~~~q~~~~~~~~~~~~~l~~~~~~l~~~  214 (217)
T d1urua_         180 ---VTN-LQTLFATEQVFHNETAKIYSELEAIVDKLATE  214 (217)
T ss_dssp             ---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence               111 11123344556666666777777777777654