Citrus Sinensis ID: 016757

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
MNLLSIVLAILVAILSSTFLINPNTLLTTFLPPNIVTKFIPYNIDRGHRHRKRPDHRKKVSICDDFPKDFAPPDTNTTSYFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGTGRIWLGRAWRPFSRVVFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQRLNDTQASLFLNTSFIDGDQWLQSYNN
ccHHHHHHHHHHHHHHHccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHccccccccEEEEEEcEEEEEEEEEccccccEEEEEEccccEEEEEcccccccccccccEEEEEEcccEEEEccEEEEcccccccccccccEEEEEEEccEEEEEccEEEEccccEEcccccEEEEccEEEEEcEEEEcccEEEEEccEEEEEEcccccccccccEEEEEcccccccccEEEEEEccEEEEccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHcccccccccccccccccccc
ccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEccccccccccccccEEEccccccEEEEEEEEEcccccEEEcccEEEEEccEEEEcEEEEEEccEEEEEccEEEEEccccccccccccEEEEEccccccccccEEEEEccEEEccccccccccHHHHccEEEEEEcccccccccccccccccccccEEEEEEEccccccccccccEEEEEEEcHHHHHHccHHHHcccccccccccc
MNLLSIVLAILVAILSStflinpntllttflppnivtkfipynidrghrhrkrpdhrkkvsicddfpkdfappdtnttsyfcvdrngccnftsvqsavdavpnlslkrNIVLINSgiyyekvtvpktkpnitfqgqgytstaiawndtaksangtfysgSVQVFASNfmaknvsfmnvapipspgdvGAQAVAIRIsgdqsaffgcgffgaqdtlhddrgrhyfkdchiqgSIDFIFGNARSFYENCQlismanpvapgskaisgavtahgraskdensgfafvnctvggtgriwlgrawrpFSRVVFLFASmtdiiapegwndfndptrdqtvfygeynctgagsdmtmrapyvqRLNDtqaslflntsfidgdqwLQSYNN
MNLLSIVLAILVAILSSTFLINPNTllttflppnivTKFIpynidrghrhrkrpdhrkkvsicddfpkdfappdTNTTSYFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVAPGSKAISGAVTAHgraskdensgfafvNCTVGGTGRIWLGRAWRPFSRVVFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQRLNDTQASLFLNtsfidgdqwlqsynn
MNllsivlailvailssTFLINPNTLLTTFLPPNIVTKFIPYNIDrghrhrkrpdhrkkVSICDDFPKDFAPPDTNTTSYFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGTGRIWLGRAWRPFSRVVFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQRLNDTQASLFLNTSFIDGDQWLQSYNN
**LLSIVLAILVAILSSTFLINPNTLLTTFLPPNIVTKFIPYNIDRG************VSICDDFPKDFAPPDTNTTSYFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVA*********************SGFAFVNCTVGGTGRIWLGRAWRPFSRVVFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQRLNDTQASLFLNTSFIDGDQWL*****
**LLSIVLAILVAILSSTFLINPNTLLTTFLPPNIVTKFIP***************************DFAPPDTNTTSYFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGTGRIWLGRAWRPFSRVVFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQRLNDTQASLFLNTSFIDGDQWLQ****
MNLLSIVLAILVAILSSTFLINPNTLLTTFLPPNIVTKFIPYNIDRG************VSICDDFPKDFAPPDTNTTSYFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGTGRIWLGRAWRPFSRVVFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQRLNDTQASLFLNTSFIDGDQWLQSYNN
MNLLSIVLAILVAILSSTFLINPNTLLTTFLPPNIVTKFIPYNIDRGH***********************PPDTNTTSYFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGTGRIWLGRAWRPFSRVVFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQRLNDTQASLFLNTSFIDGDQWL*****
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MNLLSIVLAILVAILSSTFLINPNTLLTTFLPPNIVTKFIPYNIDRGHRHRKRPDHRKKVSICDDFPKDFAPPDTNTTSYFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGTGRIWLGRAWRPFSRVVFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQRLNDTQASLFLNTSFIDGDQWLQSYNN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query383 2.2.26 [Sep-21-2011]
O23038393 Probable pectinesterase 8 yes no 0.856 0.834 0.762 1e-157
Q9ZQA3407 Probable pectinesterase 1 no no 0.791 0.744 0.542 2e-96
Q9ZQA4333 Putative pectinesterase 1 no no 0.806 0.927 0.477 4e-86
Q8VYZ3383 Probable pectinesterase 5 no no 0.736 0.736 0.479 3e-83
Q8LPF3362 Probable pectinesterase 6 no no 0.751 0.795 0.468 5e-72
Q9FM79380 Pectinesterase QRT1 OS=Ar no no 0.751 0.757 0.436 4e-64
Q9FKF3338 Putative pectinesterase 6 no no 0.749 0.849 0.414 2e-63
Q9LY18361 Probable pectinesterase 4 no no 0.746 0.792 0.410 4e-63
Q9LY17361 Probable pectinesterase 5 no no 0.746 0.792 0.414 2e-62
Q9LY19361 Probable pectinesterase 4 no no 0.731 0.775 0.417 8e-62
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function desciption
 Score =  555 bits (1431), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 250/328 (76%), Positives = 296/328 (90%)

Query: 52  KRPDHRKKVSICDDFPKDFAPPDTNTTSYFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIV 111
           K  D ++KVSICDDFPK+  P DT+TTSY CVD+NGCCNFT+VQSAVDAV N S +RN++
Sbjct: 62  KPSDTKRKVSICDDFPKNIPPLDTDTTSYLCVDKNGCCNFTTVQSAVDAVGNFSQRRNVI 121

Query: 112 LINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFMAK 171
            INSG+YYEKV +PKTKPNIT QGQG+  TAIAWNDTA SANGTFY  +VQVF S F+AK
Sbjct: 122 WINSGMYYEKVVIPKTKPNITLQGQGFDITAIAWNDTAYSANGTFYCATVQVFGSQFVAK 181

Query: 172 NVSFMNVAPIPSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQG 231
           N+SFMNVAPIP PGDVGAQAVAIRI+GD+SAF GCGFFGAQDTLHDDRGRHYFKDC+IQG
Sbjct: 182 NISFMNVAPIPKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKDCYIQG 241

Query: 232 SIDFIFGNARSFYENCQLISMANPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGT 291
           SIDFIFGNA+S Y++C++ISMAN ++PGSKA++GAVTA+GR+SKDENSGF+FVNCT+GGT
Sbjct: 242 SIDFIFGNAKSLYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGT 301

Query: 292 GRIWLGRAWRPFSRVVFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMR 351
           G +WLGRAWRP+SRVVF+  +MTD+IAPEGWN+FNDP+RD T+FYGEYNC+G G+DM+ R
Sbjct: 302 GHVWLGRAWRPYSRVVFVSTTMTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKR 361

Query: 352 APYVQRLNDTQASLFLNTSFIDGDQWLQ 379
           APYVQ+LN+TQ +L +NTSFIDGDQWLQ
Sbjct: 362 APYVQKLNETQVALLINTSFIDGDQWLQ 389
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQA4|PME14_ARATH Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1 Back     alignment and function description
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKF3|PME63_ARATH Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2 Back     alignment and function description
>sp|Q9LY18|PME49_ARATH Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY17|PME50_ARATH Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY19|PME48_ARATH Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
255560094396 Pectinesterase-1 precursor, putative [Ri 0.994 0.962 0.734 1e-165
224139564380 predicted protein [Populus trichocarpa] 0.960 0.968 0.761 1e-161
356570508395 PREDICTED: probable pectinesterase 8-lik 0.924 0.896 0.749 1e-160
357509867389 hypothetical protein MTR_7g092780 [Medic 0.984 0.969 0.729 1e-159
297848802403 predicted protein [Arabidopsis lyrata su 0.853 0.811 0.768 1e-156
15220471393 putative pectinesterase 8 [Arabidopsis t 0.856 0.834 0.762 1e-155
449523527394 PREDICTED: probable pectinesterase 8-lik 0.853 0.829 0.779 1e-155
449460078394 PREDICTED: probable pectinesterase 8-lik 0.853 0.829 0.779 1e-154
2388565391 Similar to Prunus pectinesterase (gb|X95 0.851 0.833 0.759 1e-153
225464784397 PREDICTED: probable pectinesterase 8 [Vi 0.992 0.957 0.692 1e-151
>gi|255560094|ref|XP_002521065.1| Pectinesterase-1 precursor, putative [Ricinus communis] gi|223539768|gb|EEF41349.1| Pectinesterase-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/395 (73%), Positives = 329/395 (83%), Gaps = 14/395 (3%)

Query: 1   MNLLSIVLAILVA---ILSSTFLINPN----------TLLTTFLPPNIVTKFIPYNIDRG 47
           M+L SI L +LVA   + +ST +IN N           L  T     I+      NI+  
Sbjct: 2   MSLRSISLTLLVAFFAVFASTAIINQNPAAFLKEVVFELSHTIFSSPIIATIFSCNIEH- 60

Query: 48  HRHRKRPDHRKKVSICDDFPKDFAPPDTNTTSYFCVDRNGCCNFTSVQSAVDAVPNLSLK 107
           H H+K PD  K V+ICDDFP D  PPDTNTTS FCVD NGCCNFT+VQSAVDAV N S K
Sbjct: 61  HHHKKHPDKGKLVNICDDFPIDIPPPDTNTTSTFCVDPNGCCNFTTVQSAVDAVANFSQK 120

Query: 108 RNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASN 167
           R I+ INSGIYYE+V VP TK N+TFQGQGYTSTAI WN+TA S++GTFYSGSVQVF++N
Sbjct: 121 RTIIWINSGIYYERVIVPITKQNVTFQGQGYTSTAIVWNNTANSSHGTFYSGSVQVFSNN 180

Query: 168 FMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDC 227
           F+AKN+SFMNVAPIP PGD+GAQAVA+RISGDQ+AF+GCGFFGAQDTLHDD+GRHYFKDC
Sbjct: 181 FIAKNISFMNVAPIPGPGDMGAQAVAMRISGDQAAFWGCGFFGAQDTLHDDKGRHYFKDC 240

Query: 228 HIQGSIDFIFGNARSFYENCQLISMANPVAPGSKAISGAVTAHGRASKDENSGFAFVNCT 287
           +IQGSIDFIFG+ARS YE+C+LISMANPVAPG ++I+GAVTAHGR SKDEN+GFAFVNCT
Sbjct: 241 YIQGSIDFIFGDARSLYESCELISMANPVAPGQRSINGAVTAHGRTSKDENTGFAFVNCT 300

Query: 288 VGGTGRIWLGRAWRPFSRVVFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSD 347
           +GGTGRIWLGRAWRPFSRVVF F SMTDIIA EGWNDFNDPTRDQT+FYGEYNC+G G++
Sbjct: 301 LGGTGRIWLGRAWRPFSRVVFAFTSMTDIIAAEGWNDFNDPTRDQTIFYGEYNCSGPGAN 360

Query: 348 MTMRAPYVQRLNDTQASLFLNTSFIDGDQWLQSYN 382
           MTMRA YVQRLNDTQAS FL+ SFIDGDQWLQSYN
Sbjct: 361 MTMRAAYVQRLNDTQASAFLDASFIDGDQWLQSYN 395

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224139564|ref|XP_002323171.1| predicted protein [Populus trichocarpa] gi|222867801|gb|EEF04932.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356570508|ref|XP_003553427.1| PREDICTED: probable pectinesterase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|357509867|ref|XP_003625222.1| hypothetical protein MTR_7g092780 [Medicago truncatula] gi|124360659|gb|ABN08648.1| Pectinesterase [Medicago truncatula] gi|355500237|gb|AES81440.1| hypothetical protein MTR_7g092780 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297848802|ref|XP_002892282.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338124|gb|EFH68541.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15220471|ref|NP_172023.1| putative pectinesterase 8 [Arabidopsis thaliana] gi|229891472|sp|O23038.2|PME8_ARATH RecName: Full=Probable pectinesterase 8; Short=PE 8; AltName: Full=Pectin methylesterase 2; Short=AtPME2; AltName: Full=Pectin methylesterase 8; Short=AtPME8; Flags: Precursor gi|332189701|gb|AEE27822.1| putative pectinesterase 8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449523527|ref|XP_004168775.1| PREDICTED: probable pectinesterase 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449460078|ref|XP_004147773.1| PREDICTED: probable pectinesterase 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|2388565|gb|AAB71446.1| Similar to Prunus pectinesterase (gb|X95991) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225464784|ref|XP_002267842.1| PREDICTED: probable pectinesterase 8 [Vitis vinifera] gi|296087530|emb|CBI34119.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
TAIR|locus:2207245393 AT1G05310 [Arabidopsis thalian 0.835 0.814 0.771 1.1e-144
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.788 0.742 0.540 3.1e-90
TAIR|locus:2040525333 AT2G36700 [Arabidopsis thalian 0.806 0.927 0.484 8.5e-81
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.736 0.736 0.479 9e-77
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.751 0.795 0.468 4.9e-69
TAIR|locus:2162102380 QRT1 "QUARTET 1" [Arabidopsis 0.772 0.778 0.431 6e-64
TAIR|locus:2151586338 AT5G61680 [Arabidopsis thalian 0.749 0.849 0.414 3.9e-60
TAIR|locus:2183349361 AT5G07420 [Arabidopsis thalian 0.746 0.792 0.410 5e-60
TAIR|locus:2183364361 AT5G07430 [Arabidopsis thalian 0.746 0.792 0.414 2.2e-59
TAIR|locus:2183334361 AT5G07410 [Arabidopsis thalian 0.728 0.772 0.418 3.5e-59
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
 Identities = 247/320 (77%), Positives = 291/320 (90%)

Query:    60 VSICDDFPKDFAPPDTNTTSYFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYY 119
             VSICDDFPK+  P DT+TTSY CVD+NGCCNFT+VQSAVDAV N S +RN++ INSG+YY
Sbjct:    70 VSICDDFPKNIPPLDTDTTSYLCVDKNGCCNFTTVQSAVDAVGNFSQRRNVIWINSGMYY 129

Query:   120 EKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVA 179
             EKV +PKTKPNIT QGQG+  TAIAWNDTA SANGTFY  +VQVF S F+AKN+SFMNVA
Sbjct:   130 EKVVIPKTKPNITLQGQGFDITAIAWNDTAYSANGTFYCATVQVFGSQFVAKNISFMNVA 189

Query:   180 PIPSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGN 239
             PIP PGDVGAQAVAIRI+GD+SAF GCGFFGAQDTLHDDRGRHYFKDC+IQGSIDFIFGN
Sbjct:   190 PIPKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGN 249

Query:   240 ARSFYENCQLISMANPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGTGRIWLGRA 299
             A+S Y++C++ISMAN ++PGSKA++GAVTA+GR+SKDENSGF+FVNCT+GGTG +WLGRA
Sbjct:   250 AKSLYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTGHVWLGRA 309

Query:   300 WRPFSRVVFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQRLN 359
             WRP+SRVVF+  +MTD+IAPEGWN+FNDP+RD T+FYGEYNC+G G+DM+ RAPYVQ+LN
Sbjct:   310 WRPYSRVVFVSTTMTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKRAPYVQKLN 369

Query:   360 DTQASLFLNTSFIDGDQWLQ 379
             +TQ +L +NTSFIDGDQWLQ
Sbjct:   370 ETQVALLINTSFIDGDQWLQ 389
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040525 AT2G36700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162102 QRT1 "QUARTET 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151586 AT5G61680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183349 AT5G07420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183334 AT5G07410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O23038PME8_ARATH3, ., 1, ., 1, ., 1, 10.76210.85630.8346yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVI.799.1
pectinesterase family protein (EC-3.1.1.11) (334 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
PLN02304379 PLN02304, PLN02304, probable pectinesterase 0.0
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-124
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 1e-106
PLN02634359 PLN02634, PLN02634, probable pectinesterase 1e-104
PLN02671359 PLN02671, PLN02671, pectinesterase 4e-97
PLN02432293 PLN02432, PLN02432, putative pectinesterase 7e-92
PLN02497331 PLN02497, PLN02497, probable pectinesterase 2e-84
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 2e-81
PLN02773317 PLN02773, PLN02773, pectinesterase 4e-80
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-77
PLN02176340 PLN02176, PLN02176, putative pectinesterase 9e-72
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 3e-60
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 2e-58
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 7e-57
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 9e-57
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-56
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 2e-56
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 9e-56
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 2e-55
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 2e-55
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 6e-55
PLN02314586 PLN02314, PLN02314, pectinesterase 3e-54
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-53
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 5e-53
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-52
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 6e-52
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-49
PLN02197588 PLN02197, PLN02197, pectinesterase 2e-49
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 7e-47
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 8e-43
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-40
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 5e-35
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 8e-29
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 2e-17
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information 
 Score =  690 bits (1782), Expect = 0.0
 Identities = 288/377 (76%), Positives = 321/377 (85%), Gaps = 10/377 (2%)

Query: 17  STFLINPNTL-------LTTFLPPNIVTKFIPYNID---RGHRHRKRPDHRKKVSICDDF 66
           + F  +P          L+     + +    P++I      H H K PD  KKVSICDDF
Sbjct: 3   TLFKTSPAAPLLGHLIELSLISFSSKIATSYPHSIHHHSHHHHHHKHPDDGKKVSICDDF 62

Query: 67  PKDFAPPDTNTTSYFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPK 126
           P DF PPDTNTTS  CVD NGCCNFT+VQSAVDAV N S KRN++ INSGIYYEKVTVPK
Sbjct: 63  PPDFPPPDTNTTSILCVDPNGCCNFTTVQSAVDAVGNFSQKRNVIWINSGIYYEKVTVPK 122

Query: 127 TKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGD 186
           TKPNITFQGQG+ STAIAWNDTAKSANGTFYS SVQVFASNF+AKN+SFMNVAPIP PGD
Sbjct: 123 TKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVFASNFIAKNISFMNVAPIPKPGD 182

Query: 187 VGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYEN 246
           VGAQAVAIRI+GDQ+AF+GCGFFGAQDTLHDDRGRHYFKDC+IQGSIDFIFG+ARS YEN
Sbjct: 183 VGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGDARSLYEN 242

Query: 247 CQLISMANPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGTGRIWLGRAWRPFSRV 306
           C+LISMANPV PGSK+I+GAVTAHGR SKDEN+GF+FVNCT+GGTGRIWLGRAWRP+SRV
Sbjct: 243 CRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGGTGRIWLGRAWRPYSRV 302

Query: 307 VFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQRLNDTQASLF 366
           VF + SMTDIIAPEGWNDFNDPTRDQT+FYGEYNC+G G++M+MRAPYVQ+LNDTQ S F
Sbjct: 303 VFAYTSMTDIIAPEGWNDFNDPTRDQTIFYGEYNCSGPGANMSMRAPYVQKLNDTQVSPF 362

Query: 367 LNTSFIDGDQWLQSYNN 383
           LNTSFIDGDQWLQ Y+ 
Sbjct: 363 LNTSFIDGDQWLQPYDL 379

Length = 379
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 383
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02671359 pectinesterase 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02497331 probable pectinesterase 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02432293 putative pectinesterase 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.31
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.47
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.36
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.28
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.21
PLN02773317 pectinesterase 96.78
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.72
PLN02793443 Probable polygalacturonase 96.59
PLN02682369 pectinesterase family protein 96.58
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 96.57
PLN02304379 probable pectinesterase 96.52
KOG1777 625 consensus Putative Zn-finger protein [General func 96.49
PLN02480343 Probable pectinesterase 96.35
PLN02432293 putative pectinesterase 96.25
PLN03010409 polygalacturonase 96.0
PLN02671359 pectinesterase 95.97
PRK10531422 acyl-CoA thioesterase; Provisional 95.93
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.92
smart00656190 Amb_all Amb_all domain. 95.84
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.81
PLN02497331 probable pectinesterase 95.74
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.61
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.53
PLN02218431 polygalacturonase ADPG 95.28
PLN02634359 probable pectinesterase 95.24
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.08
PLN02155394 polygalacturonase 95.03
PLN03003456 Probable polygalacturonase At3g15720 94.99
PLN02176340 putative pectinesterase 94.82
PLN02416541 probable pectinesterase/pectinesterase inhibitor 94.71
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.56
PLN02197588 pectinesterase 94.56
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.51
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 94.5
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.44
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.44
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 94.39
PLN02217670 probable pectinesterase/pectinesterase inhibitor 94.37
PLN02916502 pectinesterase family protein 94.34
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.28
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.22
PLN02665366 pectinesterase family protein 94.19
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.09
PLN02314586 pectinesterase 94.05
PLN02301548 pectinesterase/pectinesterase inhibitor 93.98
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.76
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.73
PLN02484587 probable pectinesterase/pectinesterase inhibitor 93.66
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 93.54
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 93.43
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 93.13
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 91.04
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 90.63
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 90.41
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 87.96
PF1528461 PAGK: Phage-encoded virulence factor 85.75
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 82.79
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 81.88
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 81.74
PLN02188404 polygalacturonase/glycoside hydrolase family prote 81.68
>PLN02304 probable pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=8.5e-109  Score=820.30  Aligned_cols=341  Identities=83%  Similarity=1.387  Sum_probs=324.8

Q ss_pred             ccccCccccCCCCCcCCcccCCCCCCCCCCCCCCCceEEEEcCCCCCCCchHHHHHHhCcCCCCceEEEEEeCceEeeEE
Q 016757           43 NIDRGHRHRKRPDHRKKVSICDDFPKDFAPPDTNTTSYFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKV  122 (383)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~V~~~G~gdf~TIQaAIdaap~~~~~~~~I~I~~G~Y~E~V  122 (383)
                      .+.+|||+++||+.+++.+.||+||..+++|+.+.+.+++|+++|+|||+|||+|||++|+++++|++|+|+||+|+|+|
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Va~dGsGdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~EkV  118 (379)
T PLN02304         39 HHSHHHHHHKHPDDGKKVSICDDFPPDFPPPDTNTTSILCVDPNGCCNFTTVQSAVDAVGNFSQKRNVIWINSGIYYEKV  118 (379)
T ss_pred             cccccccccCCcccCccccccccCCCCCCchhhccceEEEECCCCCCCccCHHHHHhhCcccCCCcEEEEEeCeEeEEEE
Confidence            56778888999999999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             ecCCCCCCEEEeccCCCceEEeecCCccCCCCcceeeeeEEEcCCEEEEceEEEeecCCCCCCCCCCceEEEEEeccceE
Q 016757          123 TVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQSA  202 (383)
Q Consensus       123 ~I~~~k~nItL~G~g~~~TiI~~~~~~~~~~gt~~satv~V~a~~f~a~nitf~Nt~~~~~~g~~~~QAvAl~v~gd~~~  202 (383)
                      .||++||+|+|+|+|.+.|+|+|++.+....+|+.|+||.|.+++|+++||||+|+++.+.+|..++|||||++.|||++
T Consensus       119 ~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~  198 (379)
T PLN02304        119 TVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAA  198 (379)
T ss_pred             EECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEE
Confidence            99999999999999999999999998777778999999999999999999999999976666777899999999999999


Q ss_pred             EEeeeeecccceeecCCcceEEeecEEeceeeEEeccccEEEeeeEEEEccCCCCCCCCCcceEEEecCCCCCCCCceEE
Q 016757          203 FFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVAPGSKAISGAVTAHGRASKDENSGFA  282 (383)
Q Consensus       203 f~~C~f~G~QDTL~~~~gr~yf~~C~IeG~VDFIfG~g~a~Fe~C~I~~~~~~~~~g~~~~~g~ITA~~r~~~~~~~G~v  282 (383)
                      ||+|+|+|||||||++.|||||++|||||+||||||+|+++||+|+|+++.++..+|+....|+||||+|+++.+++|||
T Consensus       199 fy~C~f~G~QDTLy~~~gR~Yf~~CyIeG~VDFIFG~g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~Gfv  278 (379)
T PLN02304        199 FWGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGDARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFS  278 (379)
T ss_pred             EEeceEecccceeEeCCCCEEEEeeEEcccccEEeccceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEE
Confidence            99999999999999999999999999999999999999999999999998766556665567999999999999999999


Q ss_pred             EEccEEcccCcEEeceeccccccEEEecCcCCCccCCCCCCCCCCCCCCcceEEEEecccCCCCCCCCCcccccCCCHHH
Q 016757          283 FVNCTVGGTGRIWLGRAWRPFSRVVFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQRLNDTQ  362 (383)
Q Consensus       283 f~nc~i~~~g~~yLGRpW~~~s~vvf~~t~m~~~I~p~GW~~w~~~~~~~t~~f~EY~~~GpGa~~s~Rv~w~~~Lt~~e  362 (383)
                      |++|+|++++++||||||++|+||||++|+|+++|.|+||.+|+.+.+.++++|+||+|+||||++++||+|+++|+++|
T Consensus       279 F~~C~itg~g~vyLGRPW~pysrvVf~~t~m~~~I~p~GW~~w~~~~~~~tv~yaEY~ntGpGA~~s~Rv~Ws~~Ls~~e  358 (379)
T PLN02304        279 FVNCTIGGTGRIWLGRAWRPYSRVVFAYTSMTDIIAPEGWNDFNDPTRDQTIFYGEYNCSGPGANMSMRAPYVQKLNDTQ  358 (379)
T ss_pred             EECCEEccCcceeecCCCCCcceEEEEecccCCEEcCCccCccCCCCCCCceEEEEEcccCCCCCcccCccccccCCHHH
Confidence            99999999999999999999999999999999999999999999887888999999999999999999999999999999


Q ss_pred             HhcccccccccCCCCCCCCCC
Q 016757          363 ASLFLNTSFIDGDQWLQSYNN  383 (383)
Q Consensus       363 A~~~~~~~fi~g~~Wl~~~~~  383 (383)
                      |++|+..+||+|++||++++.
T Consensus       359 A~~f~~~~fi~g~~Wl~~~~~  379 (379)
T PLN02304        359 VSPFLNTSFIDGDQWLQPYDL  379 (379)
T ss_pred             HHhhhhhhccCCCcccccccC
Confidence            999999999999999998874

>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF15284 PAGK: Phage-encoded virulence factor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 2e-45
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-34
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 7e-16
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 7e-16
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 6e-15
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 8e-15
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  179 bits (455), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/311 (34%), Positives = 162/311 (52%), Gaps = 22/311 (7%)
Query: 82  CVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTST 141
            V  +G  ++ +V  AV A P  S  R ++ I +G+Y E V VPK K NI F G G TST
Sbjct: 10  VVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTST 69
Query: 142 AIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQS 201
            I  +   +  + TF S +V    + F+A++++F N A     G    QAVA+R+  D S
Sbjct: 70  IITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAVALRVGSDLS 124
Query: 202 AFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVAPGSK 261
           AF+ C     QD+L+    R +F +C I G++DFIFGNA    ++C +    +   PGS 
Sbjct: 125 AFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDI----HARRPGSG 180
Query: 262 AISGAVTAHGRASKDENSGFAFVNCTVGGTGRI---------WLGRAWRPFSRVVFLFAS 312
                VTA GR   ++N+G       +G T  +         +LGR W+ +SR V + +S
Sbjct: 181 Q-KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSS 239
Query: 313 MTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQ---RLNDTQASLFLNT 369
           +T++I P GW  ++      T++YGEY  TGAG+  + R  +       + T+A  F   
Sbjct: 240 ITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPG 299
Query: 370 SFIDGDQWLQS 380
           SFI G  WL++
Sbjct: 300 SFIAGGSWLKA 310
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-127
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-126
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-104
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-100
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-83
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  367 bits (945), Expect = e-127
 Identities = 107/312 (34%), Positives = 161/312 (51%), Gaps = 22/312 (7%)

Query: 81  FCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTS 140
             V  +G  ++ +V  AV A P  S  R ++ I +G+Y E V VPK K NI F G G TS
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 141 TAIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQ 200
           T I  +   +  + TF S +V    + F+A++++F N A     G    QAVA+R+  D 
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAVALRVGSDL 123

Query: 201 SAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVAPGS 260
           SAF+ C     QD+L+    R +F +C I G++DFIFGNA    ++C + +      PGS
Sbjct: 124 SAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHA----RRPGS 179

Query: 261 KAISGAVTAHGRASKDENSGFAFVNCTVGGTG---------RIWLGRAWRPFSRVVFLFA 311
                 VTA GR   ++N+G       +G T            +LGR W+ +SR V + +
Sbjct: 180 GQ-KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQS 238

Query: 312 SMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAP---YVQRLNDTQASLFLN 368
           S+T++I P GW  ++      T++YGEY  TGAG+  + R     +    + T+A  F  
Sbjct: 239 SITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTP 298

Query: 369 TSFIDGDQWLQS 380
            SFI G  WL++
Sbjct: 299 GSFIAGGSWLKA 310
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.64
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.39
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.55
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.11
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.68
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.43
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.36
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.15
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.04
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.01
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.95
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 96.93
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.89
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 96.89
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.73
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.72
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 96.7
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.67
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.66
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.55
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.51
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.49
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.48
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.43
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.42
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 96.33
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.1
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.98
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.9
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.87
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.55
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.49
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 94.94
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 94.87
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 91.69
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 91.16
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 90.87
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 90.61
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 90.02
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 86.89
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 81.25
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=2.2e-89  Score=673.22  Aligned_cols=293  Identities=28%  Similarity=0.545  Sum_probs=274.3

Q ss_pred             eEEEEcCCCCCCCchHHHHHHhCcCCCCceEEEEEeCceEeeEEecCCCCCCEEEeccCCCceEEeecCCccCCCCccee
Q 016757           79 SYFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYS  158 (383)
Q Consensus        79 ~~i~V~~~G~gdf~TIQaAIdaap~~~~~~~~I~I~~G~Y~E~V~I~~~k~nItL~G~g~~~TiI~~~~~~~~~~gt~~s  158 (383)
                      .+++|+++|+|+|+|||+|||++|+++++|++|+|+||+|+|+|.|++.||+|+|+|++.+.|+|++++....+.+|+.+
T Consensus         3 ~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~s   82 (317)
T 1xg2_A            3 ANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRS   82 (317)
T ss_dssp             CSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGG
T ss_pred             ceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccce
Confidence            36999999999999999999999999999999999999999999999999999999999999999999887777889999


Q ss_pred             eeeEEEcCCEEEEceEEEeecCCCCCCCCCCceEEEEEeccceEEEeeeeecccceeecCCcceEEeecEEeceeeEEec
Q 016757          159 GSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFG  238 (383)
Q Consensus       159 atv~V~a~~f~a~nitf~Nt~~~~~~g~~~~QAvAl~v~gd~~~f~~C~f~G~QDTL~~~~gr~yf~~C~IeG~VDFIfG  238 (383)
                      +||.|.+++|+++||||+|++     |..++||+||++.+|+++|++|+|+|+|||||++.+||||++|+|+|+||||||
T Consensus        83 atv~v~a~~f~~~~lt~~Nt~-----g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG  157 (317)
T 1xg2_A           83 ATLAAVGQGFILQDICIQNTA-----GPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFG  157 (317)
T ss_dssp             CSEEECSTTCEEESCEEEECC-----CGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEE
T ss_pred             eEEEEECCCEEEEEeEEeccc-----CCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcC
Confidence            999999999999999999997     445789999999999999999999999999999999999999999999999999


Q ss_pred             cccEEEeeeEEEEccCCCCCCCCCcceEEEecCCCCCCCCceEEEEccEEcccC---------cEEeceeccccccEEEe
Q 016757          239 NARSFYENCQLISMANPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGTG---------RIWLGRAWRPFSRVVFL  309 (383)
Q Consensus       239 ~g~a~Fe~C~I~~~~~~~~~g~~~~~g~ITA~~r~~~~~~~G~vf~nc~i~~~g---------~~yLGRpW~~~s~vvf~  309 (383)
                      +++++||+|+|+++.. . ++   ..++||||+|+++.+++||||+||+|++++         ++||||||++|+||||+
T Consensus       158 ~~~avf~~c~i~~~~~-~-~~---~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~  232 (317)
T 1xg2_A          158 NAAVVFQKCQLVARKP-G-KY---QQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVM  232 (317)
T ss_dssp             CCEEEEESCEEEECCC-S-TT---CCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEE
T ss_pred             CceEEEeeeEEEEecc-C-CC---CccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEE
Confidence            9999999999999642 1 23   258999999999999999999999999764         79999999999999999


Q ss_pred             cCcCCCccCCCCCCCCCCCCCCcceEEEEecccCCCCCCCCCccccc--CC-CHHHHhcccccccccCCCCCCCC
Q 016757          310 FASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQ--RL-NDTQASLFLNTSFIDGDQWLQSY  381 (383)
Q Consensus       310 ~t~m~~~I~p~GW~~w~~~~~~~t~~f~EY~~~GpGa~~s~Rv~w~~--~L-t~~eA~~~~~~~fi~g~~Wl~~~  381 (383)
                      +|+|+++|.|+||.+|+++.+.++++|+||+|+|||+++++||+|++  +| +++||++|+..+||+|++|+|..
T Consensus       233 ~t~~~~~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~  307 (317)
T 1xg2_A          233 ESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRST  307 (317)
T ss_dssp             SCEECTTBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGG
T ss_pred             ecccCCcccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCC
Confidence            99999999999999999888889999999999999999999999996  56 57999999999999999999964
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 383
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-108
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 2e-73
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  317 bits (814), Expect = e-108
 Identities = 107/310 (34%), Positives = 162/310 (52%), Gaps = 22/310 (7%)

Query: 83  VDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTA 142
           V  +G  ++ +V  AV A P  S  R ++ I +G+Y E V VPK K NI F G G TST 
Sbjct: 11  VAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTI 70

Query: 143 IAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQSA 202
           I  +   +  + TF S +V    + F+A++++F N A     G    QAVA+R+  D SA
Sbjct: 71  ITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAVALRVGSDLSA 125

Query: 203 FFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVAPGSKA 262
           F+ C     QD+L+    R +F +C I G++DFIFGNA    ++C + +      PGS  
Sbjct: 126 FYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHA----RRPGSG- 180

Query: 263 ISGAVTAHGRASKDENSGFAFVNCTVGGTGRI---------WLGRAWRPFSRVVFLFASM 313
               VTA GR   ++N+G       +G T  +         +LGR W+ +SR V + +S+
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240

Query: 314 TDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAP---YVQRLNDTQASLFLNTS 370
           T++I P GW  ++      T++YGEY  TGAG+  + R     +    + T+A  F   S
Sbjct: 241 TNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGS 300

Query: 371 FIDGDQWLQS 380
           FI G  WL++
Sbjct: 301 FIAGGSWLKA 310
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.99
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.7
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.14
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.95
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.92
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.82
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.74
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.71
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.31
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.19
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.83
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.75
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.44
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.14
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.95
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 94.62
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 93.83
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 89.85
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 86.53
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 82.96
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.7e-94  Score=706.38  Aligned_cols=292  Identities=36%  Similarity=0.663  Sum_probs=276.0

Q ss_pred             EEEEcCCCCCCCchHHHHHHhCcCCCCceEEEEEeCceEeeEEecCCCCCCEEEeccCCCceEEeecCCccCCCCcceee
Q 016757           80 YFCVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSG  159 (383)
Q Consensus        80 ~i~V~~~G~gdf~TIQaAIdaap~~~~~~~~I~I~~G~Y~E~V~I~~~k~nItL~G~g~~~TiI~~~~~~~~~~gt~~sa  159 (383)
                      +++|++||+|||+|||+|||++|+++++|++|+|+||+|+|+|.||++||+|+|+|+|.+.|+|+++..+....+|+.++
T Consensus         8 ~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~~sa   87 (319)
T d1gq8a_           8 NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSA   87 (319)
T ss_dssp             SEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGC
T ss_pred             CEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCcccccc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999888888899999


Q ss_pred             eeEEEcCCEEEEceEEEeecCCCCCCCCCCceEEEEEeccceEEEeeeeecccceeecCCcceEEeecEEeceeeEEecc
Q 016757          160 SVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGN  239 (383)
Q Consensus       160 tv~V~a~~f~a~nitf~Nt~~~~~~g~~~~QAvAl~v~gd~~~f~~C~f~G~QDTL~~~~gr~yf~~C~IeG~VDFIfG~  239 (383)
                      ||.|.+++|+++||+|+|++     |..++|||||++.+||++||+|+|+|||||||++.|||||++|||||+||||||+
T Consensus        88 t~~v~~~~f~a~nitf~Nt~-----g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~  162 (319)
T d1gq8a_          88 TVAAVGAGFLARDITFQNTA-----GAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGN  162 (319)
T ss_dssp             SEEECSTTCEEEEEEEEECC-----CGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEES
T ss_pred             ceeeecCCeEEEeeEEEeCC-----CCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecC
Confidence            99999999999999999998     4457899999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEeeeEEEEccCCCCCCCCCcceEEEecCCCCCCCCceEEEEccEEcccC---------cEEeceeccccccEEEec
Q 016757          240 ARSFYENCQLISMANPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGTG---------RIWLGRAWRPFSRVVFLF  310 (383)
Q Consensus       240 g~a~Fe~C~I~~~~~~~~~g~~~~~g~ITA~~r~~~~~~~G~vf~nc~i~~~g---------~~yLGRpW~~~s~vvf~~  310 (383)
                      ++++||+|+|+++...  .|   ..|+||||+|+++.+++||||++|+|++++         ++||||||++++||||++
T Consensus       163 ~~a~f~~c~i~~~~~~--~~---~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~  237 (319)
T d1gq8a_         163 AAVVLQDCDIHARRPG--SG---QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQ  237 (319)
T ss_dssp             CEEEEESCEEEECCCS--TT---CCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEES
T ss_pred             ceeEeecceeeeecCC--CC---CceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEe
Confidence            9999999999997532  22   358999999999999999999999998764         579999999999999999


Q ss_pred             CcCCCccCCCCCCCCCCCCCCcceEEEEecccCCCCCCCCCcccc---cCCCHHHHhcccccccccCCCCCCCC
Q 016757          311 ASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYV---QRLNDTQASLFLNTSFIDGDQWLQSY  381 (383)
Q Consensus       311 t~m~~~I~p~GW~~w~~~~~~~t~~f~EY~~~GpGa~~s~Rv~w~---~~Lt~~eA~~~~~~~fi~g~~Wl~~~  381 (383)
                      |+|+++|.|+||.+|+.+...++++|+||+|+|||+++++||+|+   ++|+++||++|+..+||+|++|+|..
T Consensus       238 t~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t  311 (319)
T d1gq8a_         238 SSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKAT  311 (319)
T ss_dssp             CEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGG
T ss_pred             cccccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccC
Confidence            999999999999999988888999999999999999999999997   58999999999999999999999964
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure