Citrus Sinensis ID: 016782

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
MYLSEKPRPYLTEKPRPIDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGELQPQQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDPPPGNGGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRGVT
cccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccEEEEEEccccEEEEccccHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHccccccccEEEEEccccccccccccccccHHHHHHHHHHHcccccEEccccccccccccccccccccccc
ccccccccccccccccccccccccHccccccHHHcccccccEEEEEEcccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHcccccccccccccccccccccccccHHcccccccccccHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccEEEcccccHHHHHHHHHHHHccHHHHHHHHHcHHHHEEEccccccccEEEEEEccccccccccccEEEcHHHHHHHHHHcccEEEEEcccccccccHHccccccEEEccc
mylsekprpyltekprpidyyKDEAVAAAAAAAAAASSRDMIMEVAAasngelqpqqmiladssggedhevrapkkraeTWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMRekgfdrsptmctDKWRNLLKEFKktkhqdrgsgsakMSYYKEIDEILKERSKNAQYKATsvansankvdtfmqfsdkgfddtsisfgpveatgrptlnlerrldhdghplaITTADAVAaagvppwnwrdpppgnggegqsfggkvisvkcgdytrrigidgtPDAIKEAIKSAFGIRTkrafwledEDQIVRCidrdmpvgnytlhldedhisvhtedktfytEEDYREFLARHGWtclrefdgyrnvdnmddlrpgamyrgvt
mylsekprpyltekprpiDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGELQPQQMILADSSGGEDHEvrapkkraetwvqdETRILIAFRREMDGLFNTSKSNKHLWEQISAKmrekgfdrsptmctDKWRNLLKefkktkhqdrgsgsakmsYYKEIDEILKERSKNAqykatsvansankvDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDPPPGNGGEGQSFGGKVISVKCGDYTRrigidgtpdaIKEAIKSAFgirtkrafwledEDQIVRCIDRDMPVGNYTlhldedhisvHTEDKTFYTEEDYREFLARHGWTClrefdgyrnvdnmddlrpgamyrgvt
MYLSEKPRPYLTEKPRPIDYYKDEavaaaaaaaaaaSSRDMIMEVAAASNGELQPQQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLaittadavaaaGVPPWNWRDPPPGNGGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRGVT
*******************YY**********************************************************TWVQDETRILIAFRREMDGLFNTS***KHLWEQ****************CTDKWRNLL**********************************************************************************RLDHDGHPLAITTADAVAAAGVPPWNWR************FGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDN**************
************************************************************************************ETRILIAFRREMDG******SN*HLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFK***************YYKEIDEIL*****************************************************************************************************VKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRG**
MYLSEKPRPYLTEKPRPIDYYKDEAV*************DMIMEVAAASNGELQPQQMILAD*****************TWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKK***********KMSYYKEIDEILKERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDPPPGNGGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRGVT
******PRPY*****RP**********************DMIMEVAAASNGELQPQQ*********************ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRG*GSAKMSYYKEIDEILKERSKN***********************************************RRLDHDGHPLAITTADAVAAAGVPPWNWRDPPP*N*GEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRGV*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MYLSEKPRPYLTEKPRPIDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGELQPQQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDPPPGNGGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRGVT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query383 2.2.26 [Sep-21-2011]
Q9FX53406 Trihelix transcription fa yes no 0.958 0.903 0.648 1e-151
Q9LU92372 Trihelix transcription fa no no 0.892 0.919 0.665 1e-137
Q9SDW0323 Trihelix transcription fa no no 0.287 0.340 0.327 1e-11
O80450289 Trihelix transcription fa no no 0.240 0.318 0.391 3e-11
Q39117575 Trihelix transcription fa no no 0.237 0.158 0.333 1e-08
Q8H181619 Trihelix transcription fa no no 0.211 0.130 0.344 4e-06
Q9C882 587 Trihelix transcription fa no no 0.177 0.115 0.376 7e-06
>sp|Q9FX53|TGT1_ARATH Trihelix transcription factor GT-1 OS=Arabidopsis thaliana GN=GT-1 PE=1 SV=1 Back     alignment and function desciption
 Score =  535 bits (1377), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/410 (64%), Positives = 318/410 (77%), Gaps = 43/410 (10%)

Query: 10  YLTEKPRPIDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGEL---------------- 53
           ++++K RP D+YKD+       ++  +++RDM+++V   +N  +                
Sbjct: 2   FISDKSRPTDFYKDDH----HNSSTTSTTRDMMIDVLTTTNESVDLQSHHHHNHHNHHLH 57

Query: 54  --QPQQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWE 111
             QPQQ IL   S GEDHEV+APKKRAETWVQDETR LI FRR MDGLFNTSKSNKHLWE
Sbjct: 58  QSQPQQQILLGESSGEDHEVKAPKKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWE 117

Query: 112 QISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKN 171
           QIS+KMREKGFDRSPTMCTDKWRNLLKEFKK KH DRG+GSAKMSYYKEI++IL+ERSK 
Sbjct: 118 QISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGNGSAKMSYYKEIEDILRERSKK 177

Query: 172 A---QY-KATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHP 227
               QY K+ +   ++ KVD+FMQF+DKGFDDTSISFG VEA GRP LNLERRLDHDGHP
Sbjct: 178 VTPPQYNKSPNTPPTSAKVDSFMQFTDKGFDDTSISFGSVEANGRPALNLERRLDHDGHP 237

Query: 228 LAITTA-DAVAAAGVPPWNWRDPPPGNG--GEGQSFGGKVISVKCGDYTRRIGIDGTPDA 284
           LAITTA DAVAA GV PWNWR+  PGNG    GQ FGG+VI+VK GDYTRRIG+DG+ +A
Sbjct: 238 LAITTAVDAVAANGVTPWNWRE-TPGNGDDSHGQPFGGRVITVKFGDYTRRIGVDGSAEA 296

Query: 285 IKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDE------------DHIS 332
           IKE I+SAFG+RT+RAFWLEDEDQI+RC+DRDMP+GNY L LD+            + + 
Sbjct: 297 IKEVIRSAFGLRTRRAFWLEDEDQIIRCLDRDMPLGNYLLRLDDGLAIRVCHYDESNQLP 356

Query: 333 VHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRGV 382
           VH+E+K FYTEEDYREFLAR GW+ L + DG+RN++NMDDL+PGA+YRGV
Sbjct: 357 VHSEEKIFYTEEDYREFLARQGWSSL-QVDGFRNIENMDDLQPGAVYRGV 405
Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LU92|TGT4_ARATH Trihelix transcription factor GT-4 OS=Arabidopsis thaliana GN=GT-4 PE=2 SV=1 Back     alignment and function description
>sp|Q9SDW0|TGT3A_ARATH Trihelix transcription factor GT-3a OS=Arabidopsis thaliana GN=GT-3A PE=1 SV=1 Back     alignment and function description
>sp|O80450|TGT3B_ARATH Trihelix transcription factor GT-3b OS=Arabidopsis thaliana GN=GT-3B PE=1 SV=1 Back     alignment and function description
>sp|Q39117|TGT2_ARATH Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1 Back     alignment and function description
>sp|Q8H181|GTL2_ARATH Trihelix transcription factor GTL2 OS=Arabidopsis thaliana GN=At5g28300 PE=2 SV=1 Back     alignment and function description
>sp|Q9C882|GTL1_ARATH Trihelix transcription factor GTL1 OS=Arabidopsis thaliana GN=GTL1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
356540183374 PREDICTED: trihelix transcription factor 0.929 0.951 0.736 1e-161
351724533376 GT-1 [Glycine max] gi|161789859|gb|ABX79 0.929 0.946 0.732 1e-161
255547822398 transcription factor, putative [Ricinus 0.939 0.904 0.719 1e-160
147816769384 hypothetical protein VITISV_030092 [Viti 0.926 0.924 0.711 1e-160
224102349385 predicted protein [Populus trichocarpa] 0.937 0.932 0.729 1e-159
224110784384 predicted protein [Populus trichocarpa] 0.937 0.934 0.718 1e-155
359473706348 PREDICTED: trihelix transcription factor 0.869 0.956 0.764 1e-154
449494476382 PREDICTED: trihelix transcription factor 0.924 0.926 0.708 1e-154
30683296406 DNA binding protein GT-1 [Arabidopsis th 0.958 0.903 0.648 1e-149
449450389387 PREDICTED: LOW QUALITY PROTEIN: trihelix 0.924 0.914 0.699 1e-149
>gi|356540183|ref|XP_003538569.1| PREDICTED: trihelix transcription factor GT-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 288/391 (73%), Positives = 322/391 (82%), Gaps = 35/391 (8%)

Query: 10  YLTEKPRPIDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGELQPQQ----MILADSSG 65
           YL+EKPRPID+YK+E             +RDM++EV   SNG+L P      MIL +SSG
Sbjct: 2   YLSEKPRPIDFYKEEG------------ARDMMIEVV--SNGDLPPPPPPPPMILGESSG 47

Query: 66  GE-DHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDR 124
            + + E++APKKRAETWVQDETR LI  RREMD LFNTSKSNKHLWEQISAKMREKGFDR
Sbjct: 48  EDPEVEIKAPKKRAETWVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDR 107

Query: 125 SPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNAQYKATSVANSAN 184
           SPTMCTDKWRNLLKEFKK KHQDRGSGSAKMSYYKEIDEIL+ERSKN QYK+ +      
Sbjct: 108 SPTMCTDKWRNLLKEFKKAKHQDRGSGSAKMSYYKEIDEILRERSKNVQYKSPT---PPP 164

Query: 185 KVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPW 244
           KVD+FMQF+DKG DDTSISFGPVEATGRPTLNLER LDHDGHPLAITTADAVAA+GVPPW
Sbjct: 165 KVDSFMQFADKGIDDTSISFGPVEATGRPTLNLERSLDHDGHPLAITTADAVAASGVPPW 224

Query: 245 NWRDPPPGNGGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLE 304
           NWR+  PGNGGE QS  G+VISVK GDYTRRIGIDGTP+AIKEAI++AF +RTKR FWLE
Sbjct: 225 NWRE-TPGNGGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRTFWLE 283

Query: 305 DEDQIVRCIDRDMPVGNYTLHLDE------------DHISVHTEDKTFYTEEDYREFLAR 352
           DEDQI+R IDR+MP+GNYTLH+DE            DHI VHTEDK FYTE+D+R+FL R
Sbjct: 284 DEDQIIRSIDREMPLGNYTLHIDEGMAIKLPLYDEPDHIPVHTEDKIFYTEDDFRDFLTR 343

Query: 353 HGWTCLREFDGYRNVDNMDDLRPGAMYRGVT 383
            GW CLREFD YRN+DNMDDLRPGA+YRGV+
Sbjct: 344 RGWICLREFDSYRNIDNMDDLRPGAIYRGVS 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|351724533|ref|NP_001236549.1| GT-1 [Glycine max] gi|161789859|gb|ABX79677.1| GT-1 [Glycine max] Back     alignment and taxonomy information
>gi|255547822|ref|XP_002514968.1| transcription factor, putative [Ricinus communis] gi|223546019|gb|EEF47522.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147816769|emb|CAN73236.1| hypothetical protein VITISV_030092 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224102349|ref|XP_002312646.1| predicted protein [Populus trichocarpa] gi|222852466|gb|EEE90013.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110784|ref|XP_002315635.1| predicted protein [Populus trichocarpa] gi|222864675|gb|EEF01806.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359473706|ref|XP_002270945.2| PREDICTED: trihelix transcription factor GT-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449494476|ref|XP_004159556.1| PREDICTED: trihelix transcription factor GT-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30683296|ref|NP_172802.2| DNA binding protein GT-1 [Arabidopsis thaliana] gi|75334447|sp|Q9FX53.1|TGT1_ARATH RecName: Full=Trihelix transcription factor GT-1; AltName: Full=Trihelix DNA-binding protein GT-1 gi|9958053|gb|AAG09542.1|AC011810_1 DNA binding protein GT-1 [Arabidopsis thaliana] gi|110736565|dbj|BAF00248.1| hypothetical protein [Arabidopsis thaliana] gi|332190897|gb|AEE29018.1| DNA binding protein GT-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449450389|ref|XP_004142945.1| PREDICTED: LOW QUALITY PROTEIN: trihelix transcription factor GT-1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
TAIR|locus:2092130372 AT3G25990 [Arabidopsis thalian 0.892 0.919 0.654 2.1e-125
TAIR|locus:2009897406 GT-1 "GT-1" [Arabidopsis thali 0.830 0.783 0.647 1.4e-112
TAIR|locus:2179192323 AT5G01380 [Arabidopsis thalian 0.287 0.340 0.342 2.5e-12
TAIR|locus:2042847289 AT2G38250 [Arabidopsis thalian 0.240 0.318 0.391 1.3e-11
TAIR|locus:2036267603 AT1G76880 [Arabidopsis thalian 0.323 0.205 0.317 1e-10
TAIR|locus:2036272575 GT2 [Arabidopsis thaliana (tax 0.305 0.203 0.307 7.5e-09
TAIR|locus:2167336911 emb2746 "embryo defective 2746 0.422 0.177 0.238 5.2e-08
TAIR|locus:2185319619 AT5G28300 [Arabidopsis thalian 0.339 0.210 0.300 6.6e-08
TAIR|locus:2169013398 AT5G47660 [Arabidopsis thalian 0.242 0.233 0.288 1.1e-06
TAIR|locus:2100148481 EDA31 "embryo sac development 0.237 0.189 0.315 2.7e-05
TAIR|locus:2092130 AT3G25990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
 Identities = 239/365 (65%), Positives = 285/365 (78%)

Query:    38 SRDMIMEVA-AASNGELQPQQMILADSSGGEDHEV-RAPKKRAETWVQDETRILIAFRRE 95
             SRD+ M +    SNG+LQP Q+IL +SSGGEDHE+ +APKKRAETW QDETR LI+ RRE
Sbjct:    10 SRDINMMIGDVTSNGDLQPHQIILGESSGGEDHEIIKAPKKRAETWAQDETRTLISLRRE 69

Query:    96 MDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTK-HQDRGS--GS 152
             MD LFNTSKSNKHLWEQIS KMREKGFDRSP+MCTDKWRN+LKEFKK K H+D+ +  GS
Sbjct:    70 MDNLFNTSKSNKHLWEQISKKMREKGFDRSPSMCTDKWRNILKEFKKAKQHEDKATSGGS 129

Query:   153 AKMSYYKEIDEILKERSKN-AQYK--ATSVANSANKVDTFMQFSDKGFDDTSISFGPVEA 209
              KMSYY EI++I +ER K  A YK  AT+  +SA KVD+FMQF+DKGF+DT ISF  VEA
Sbjct:   130 TKMSYYNEIEDIFRERKKKVAFYKSPATTTPSSA-KVDSFMQFTDKGFEDTGISFTSVEA 188

Query:   210 TGRPTLNLERRLDHDGHPLXXXXXXXXXXXGVPPWNWRDPPPGNGGEGQSFGGKVISVKC 269
              GRPTLNLE  LDHDG PL           GVPPWNWRD P GNG +GQ F G++I+VK 
Sbjct:   189 NGRPTLNLETELDHDGLPLPIAADPITAN-GVPPWNWRDTP-GNGVDGQPFAGRIITVKF 246

Query:   270 GDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDE- 328
             GDYTRR+GIDGT +AIKEAI+SAF +RT+RAFWLEDE+Q++R +DRDMP+GNY L +DE 
Sbjct:   247 GDYTRRVGIDGTAEAIKEAIRSAFRLRTRRAFWLEDEEQVIRSLDRDMPLGNYILRIDEG 306

Query:   329 -----------DHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGA 377
                        D + VH E+K FYTEEDYR+FLAR GWTCLREFD ++N+DNMD+L+ G 
Sbjct:   307 IAVRVCHYDESDPLPVHQEEKIFYTEEDYRDFLARRGWTCLREFDAFQNIDNMDELQSGR 366

Query:   378 MYRGV 382
             +YRG+
Sbjct:   367 LYRGM 371
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2009897 GT-1 "GT-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179192 AT5G01380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042847 AT2G38250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036267 AT1G76880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036272 GT2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167336 emb2746 "embryo defective 2746" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185319 AT5G28300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169013 AT5G47660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100148 EDA31 "embryo sac development arrest 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FX53TGT1_ARATHNo assigned EC number0.64870.95820.9039yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00035101001
SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (370 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
cd1220366 cd12203, GT1, GT1, myb-like, SANT family 5e-29
pfam1383784 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi 4e-23
pfam1387378 pfam13873, Myb_DNA-bind_5, Myb/SANT-like DNA-bindi 5e-13
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 0.002
pfam1054584 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase tra 0.002
>gnl|CDD|213402 cd12203, GT1, GT1, myb-like, SANT family Back     alignment and domain information 
 Score =  106 bits (268), Expect = 5e-29
 Identities = 34/66 (51%), Positives = 45/66 (68%)

Query: 79  ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138
           + W ++ET  LI  RREM+  F  +KS K LWE+I+AKMRE G++RS   C +KW NL K
Sbjct: 1   KRWPREETLSLIRLRREMESRFQETKSKKALWEEIAAKMRELGYNRSAKQCKEKWENLNK 60

Query: 139 EFKKTK 144
            +KK K
Sbjct: 61  YYKKVK 66

GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcrtiption pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resemble the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins. Length = 66
>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|222429 pfam13873, Myb_DNA-bind_5, Myb/SANT-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|220803 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase transcription factor Myb/SANT-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 383
KOG4282345 consensus Transcription factor GT-2 and related pr 99.93
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 99.86
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 98.5
smart0059589 MADF subfamily of SANT domain. 98.3
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 98.18
PF1054585 MADF_DNA_bdg: Alcohol dehydrogenase transcription 97.94
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.6
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 97.43
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 97.37
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 97.2
PLN03212249 Transcription repressor MYB5; Provisional 94.85
PLN03091 459 hypothetical protein; Provisional 93.69
PLN03091 459 hypothetical protein; Provisional 93.01
PLN03212249 Transcription repressor MYB5; Provisional 91.56
PF0450498 DUF573: Protein of unknown function, DUF573; Inter 81.69
KOG0051607 consensus RNA polymerase I termination factor, Myb 81.68
KOG1279506 consensus Chromatin remodeling factor subunit and 81.16
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information 
Probab=99.93  E-value=1.2e-25  Score=219.09  Aligned_cols=272  Identities=22%  Similarity=0.319  Sum_probs=207.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcccCCCC-CCCCCc
Q 016782           78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGS-GSAKMS  156 (383)
Q Consensus        78 ~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~YKKiKd~nkgs-Gskkwp  156 (383)
                      ...|+.+||++||.+|++++..|..++.|.++|++||++|.+.||.||+.||+.||+||+++||+.|....+. +...|+
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~s~~~  133 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEGSSWK  133 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCCccch
Confidence            6899999999999999999999999999999999999999999999999999999999999999999987644 457899


Q ss_pred             ChHHHHHHHc-cccccc----c---ccccccccccccccccccccCCCCCCCCCCCCCcccCCCC-CcccccccCCCCCc
Q 016782          157 YYKEIDEILK-ERSKNA----Q---YKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRP-TLNLERRLDHDGHP  227 (383)
Q Consensus       157 YFdEMDeILG-~rp~~~----s---~~sP~~~aSssK~d~~~q~~d~g~edtsi~f~pvea~gr~-~ln~E~~lD~d~~~  227 (383)
                      ||.+||.++. .++...    .   ...|.....+++    .+|...+.+.. ..+.-.+.+..+ ++|.+-....+..+
T Consensus       134 ff~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~  208 (345)
T KOG4282|consen  134 FFSELEALLITFKARPRSDEVGPGNASAPLTLSVSSE----PQFSSNPTELQ-FDGSSLEDSSQPSGLNEDNSNSSSPEP  208 (345)
T ss_pred             HHHHHHHHHhccCCCCCCCCCCcccccCccccCCCCC----CCCCCCccccc-cCCCcCCCCCcccccCccccccCCCCC
Confidence            9999999997 222111    0   111222111121    44443333332 222323444444 45444444455566


Q ss_pred             cccchhhHHHhcCCCCCCCCCCCCCCCCCCCccCceEEEEeecccceeecccCChHHHHHHHHHhhcccccceeeccccc
Q 016782          228 LAITTADAVAAAGVPPWNWRDPPPGNGGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDED  307 (383)
Q Consensus       228 l~i~~~d~vaa~g~~p~~~~~~~~~~g~~~~~~~g~~~~~~~~~~t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (383)
                      .+...++.++    .+++++++ ++.++.           +.+.+.++.+++|..+.+++.++..++...+-..|++.-.
T Consensus       209 ~~~~~~~~~~----~s~~~~~s-~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  272 (345)
T KOG4282|consen  209 VAGSLSNDTS----SSSSPDDS-ADSEGG-----------KSSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLERVE  272 (345)
T ss_pred             CCcchhhccc----cccchhcc-cccccC-----------CCCCCCccccccccchhHHHHhhhhhhhHHHHHHHHHHHh
Confidence            5543333333    78999999 554443           5678889999999999999999999999999999999998


Q ss_pred             hhhhhcccCCCCcceeEeecC--CCCccccccceecchhhHHHHHHhhccccceeccCcccccCcc
Q 016782          308 QIVRCIDRDMPVGNYTLHLDE--DHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMD  371 (383)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (383)
                      + .+.+.|-++...+....-+  ..+.++.+++.+.++.+++..++.+++++-.-..--.+..+.+
T Consensus       273 ~-~~~~~~~~~~e~~r~~~~~r~ke~e~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~  337 (345)
T KOG4282|consen  273 E-KKEQERMSEEEKWRMEEIERNKELELARQERIQETQLEIRSIKAIQASRRGSLIDPAQNTLTRS  337 (345)
T ss_pred             c-cchHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhccccCCcCcccccCCCC
Confidence            8 8999999999988887776  8899999999999999999999999999876655444444433

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>smart00595 MADF subfamily of SANT domain Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
2jmw_A86 Structure Of Dna-Binding Domain Of Arabidopsis Gt-1 2e-41
2ebi_A86 Arabidopsis Gt-1 Dna-Binding Domain With T133d Phos 1e-40
>pdb|2JMW|A Chain A, Structure Of Dna-Binding Domain Of Arabidopsis Gt-1 Length = 86 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/86 (91%), Positives = 81/86 (94%)
Query: 75  KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134
           KKRAETWVQDETR LI FRR MDGLFNTSKSNKHLWEQIS+KMREKGFDRSPTMCTDKWR
Sbjct: 1   KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWR 60
Query: 135 NLLKEFKKTKHQDRGSGSAKMSYYKE 160
           NLLKEFKK KH DRG+GSAKMSYYKE
Sbjct: 61  NLLKEFKKAKHHDRGNGSAKMSYYKE 86
>pdb|2EBI|A Chain A, Arabidopsis Gt-1 Dna-Binding Domain With T133d Phosphomimetic Mutation Length = 86 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 6e-32
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86 Back     alignment and structure
 Score =  114 bits (288), Expect = 6e-32
 Identities = 78/86 (90%), Positives = 80/86 (93%)

Query: 75  KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134
           KKRAETWVQDETR LI FRR MDGLFNTSKSNKHLWEQIS+KMREKGFDRSP MCTDKWR
Sbjct: 1   KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWR 60

Query: 135 NLLKEFKKTKHQDRGSGSAKMSYYKE 160
           NLLKEFKK KH DRG+GSAKMSYYKE
Sbjct: 61  NLLKEFKKAKHHDRGNGSAKMSYYKE 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 99.91
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 97.9
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 97.75
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 97.74
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 97.46
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 97.43
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 97.43
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 97.41
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 97.35
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.31
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 97.26
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 97.19
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 97.08
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 97.08
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 97.03
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 97.0
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 97.0
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 96.96
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 96.96
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 96.78
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.68
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.59
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 96.52
2cjj_A93 Radialis; plant development, DNA-binding protein, 96.41
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.32
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.27
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 95.9
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 95.76
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 94.7
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 95.67
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 95.66
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 95.51
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 95.27
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 94.55
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 94.26
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 93.64
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 93.57
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 92.64
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 91.42
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 90.74
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 87.89
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 87.57
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 86.55
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
Probab=99.91  E-value=5.3e-25  Score=176.00  Aligned_cols=86  Identities=91%  Similarity=1.401  Sum_probs=81.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 016782           75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAK  154 (383)
Q Consensus        75 ~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~YKKiKd~nkgsGskk  154 (383)
                      ++|..+|+++||++||++|++++..|..++++..+|++||+.|.++||+||+.||+.||+||++.||+++++++.+|+.+
T Consensus         1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG~~~   80 (86)
T 2ebi_A            1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNGSAK   80 (86)
T ss_dssp             CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCCCCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence            46889999999999999999999999998899999999999999999999999999999999999999999988778789


Q ss_pred             CcChHH
Q 016782          155 MSYYKE  160 (383)
Q Consensus       155 wpYFdE  160 (383)
                      |+||+|
T Consensus        81 ~~yf~e   86 (86)
T 2ebi_A           81 MSYYKE   86 (86)
T ss_dssp             CCCCCC
T ss_pred             CCCCCc
Confidence            999975
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 383
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 7e-04
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 0.002
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 0.002
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 13/84 (15%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 68  DHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPT 127
           + +V +  ++   W ++  R+++   +E         +  H +  IS ++     +++P 
Sbjct: 23  NSKVSSTGEKVVLWTREADRVILTMCQEQG-------AQPHTFSVISQQLG----NKTPV 71

Query: 128 MCTDKWRNLLKEFKKTKHQDRGSG 151
             + ++R L++ F         SG
Sbjct: 72  EVSHRFRELMQLFHTACESGPSSG 95
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 97.87
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 97.73
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 97.65
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 97.56
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.36
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.29
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.14
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.98
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.95
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 96.94
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 96.65
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.38
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 95.69
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 95.18
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 94.15
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=97.87  E-value=1.7e-05  Score=58.31  Aligned_cols=57  Identities=14%  Similarity=0.402  Sum_probs=46.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhc
Q 016782           78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTK  144 (383)
Q Consensus        78 ~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~YKKiK  144 (383)
                      +..||.+|-.+|+++...    |.  ..+..-|+.||..|.    .||+.||+.+|+.|....+.+.
T Consensus         1 G~~WT~eEd~~L~~~v~~----~~--~~~~~~W~~Ia~~l~----gRt~~qc~~r~~~L~~dik~ie   57 (63)
T d2cjja1           1 GRPWSAKENKAFERALAV----YD--KDTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIE   57 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHH----SC--TTCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHHH----HC--CCCchHHHHHHHHcC----CCCHHHHHHHHHHHHHHhhccc
Confidence            468999999999998864    32  223357999999986    4999999999999999888765
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure