Citrus Sinensis ID: 016792

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
MELNDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHccccccccccccccccccccccHccccccccccccccccccccccCCccccccccHHHHHHHHHcccccEEcccccccccccccccccc
*ELNDIKDAFDRVAKKQKL***KTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF
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MELNDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Protein RMD5 homolog A probableQ80YQ8
Protein RMD5 homolog A probableQ9H871
LisH domain-containing protein C29A3.03c probableO59668

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2CT2, chain A
Confidence level:confident
Coverage over the Query: 318-380
View the alignment between query and template
View the model in PyMOL
Template: 1UUJ, chain A
Confidence level:probable
Coverage over the Query: 107-137
View the alignment between query and template
View the model in PyMOL
Template: 2NXP, chain A
Confidence level:probable
Coverage over the Query: 165-229
View the alignment between query and template
View the model in PyMOL
Template: 2CA5, chain A
Confidence level:probable
Coverage over the Query: 18-71
View the alignment between query and template
View the model in PyMOL