Citrus Sinensis ID: 016792

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
MELNDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHcccccccccccccccccccccHHHcccccccccccccccccccccEEccccccccHHHHHHHHHHccccEEcccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccccccccccccccccEEEHHHHHHHHcccccEEEcccccccccHHHHcEEcc
MELNDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKsashlddkyVLTELKRRLQdiaplgqlegTQKELNIALSKYTKILEKsfnpdiskayrniefdthTVSQIIASHFYRqglfevgdcfisetkeseCSAAILSIFEDMYQILEAMksgnlepaLKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARAnlapfasnHVNEIQKLMACLIWARklescpypqlvsqtNWVTVAEELTRQFCNLVgqsyesplsVTIAAGVQALPPLLKFMTVMAgkkqewqsmkqlpvpveldkefqfhsifvcpvskeqtsddnppmimscghVLCRQSINKmsknhsrtfkcpycpsdidaAQCRQLYF
melndikdafdrvakkqklscsktqevIDLIVQEIEKALEtvksashlddkYVLTELKRRLQDiaplgqlegtqKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF
MELNDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF
********************CSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAAN********SDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPV***********MIMSCGHVLCRQSINKM***HSRTFKCPYCPSDIDAAQC*****
*ELNDIKDAFDRVAKKQKL*****QEVIDLIVQE************************************************KYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLK****************QLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF
MELNDIKDAFDR**********KTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF
*ELNDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MELNDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query382 2.2.26 [Sep-21-2011]
Q6GLP4391 Protein RMD5 homolog A OS N/A no 0.829 0.810 0.368 2e-59
Q640V2391 Protein RMD5 homolog A OS yes no 0.829 0.810 0.368 7e-59
Q80YQ8391 Protein RMD5 homolog A OS yes no 0.829 0.810 0.359 1e-57
Q9H871391 Protein RMD5 homolog A OS yes no 0.829 0.810 0.359 1e-57
O59668398 LisH domain-containing pr yes no 0.895 0.859 0.318 8e-53
Q91YQ7393 Protein RMD5 homolog B OS no no 0.829 0.806 0.331 2e-52
Q96G75393 Protein RMD5 homolog B OS no no 0.829 0.806 0.331 6e-52
Q12508421 Sporulation protein RMD5 yes no 0.612 0.555 0.286 1e-25
Q6GR10396 Macrophage erythroblast a N/A no 0.696 0.671 0.197 1e-11
Q7SXR3396 Macrophage erythroblast a no no 0.696 0.671 0.194 4e-11
>sp|Q6GLP4|RMD5A_XENLA Protein RMD5 homolog A OS=Xenopus laevis GN=rmnd5a PE=2 SV=1 Back     alignment and function desciption
 Score =  229 bits (585), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 205/345 (59%), Gaps = 28/345 (8%)

Query: 53  VLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHT--- 109
           VLT+  +R++D     +L    K+++ ++S+  K ++K+F+ DIS    +  + T +   
Sbjct: 60  VLTQCCKRIKDTVQ--KLASDHKDIHSSVSRVGKAIDKNFDADISSVGIDGCWQTDSQRI 117

Query: 110 VSQIIASHFYRQGLFEVGDCFISETKESECSAAILSI-------FEDMYQILEAMKSGNL 162
           +S+++  HF+RQG+ +V         E  C  A LSI       F ++ +ILEA+K   L
Sbjct: 118 LSEVMVEHFFRQGMLDVA--------EELCQEASLSIDASQKEPFVELNRILEALKVRVL 169

Query: 163 EPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGS--REEALKYARANLAPFASNHV 220
            PAL+WA +N + L    S L+ KLH L F+ +L  G+  ++EAL+YA+ N  PFA NH 
Sbjct: 170 RPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQQEALQYAK-NFQPFAENHQ 228

Query: 221 NEIQKLMACLIWARK-LESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAA 279
            +IQ LM  L++ R+ +E+ PY  L+    W  + +  TR  C+L+G S ESPLSV+ +A
Sbjct: 229 KDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACSLLGLSVESPLSVSFSA 288

Query: 280 GVQALPPLLKFMTVMAGKK--QEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNP 337
           G  ALP L+    V+  ++    W    +LP+ V+L K+  +HSIF CP+ ++QT+++NP
Sbjct: 289 GCVALPALINIKAVIEQRQCSGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTENNP 348

Query: 338 PMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF 382
           PM + CGH++ R ++NKM  N S+  KCPYCP +      +Q++F
Sbjct: 349 PMKLVCGHIISRDALNKMF-NGSK-LKCPYCPMEQSPGDAKQIFF 391

Xenopus laevis (taxid: 8355)
>sp|Q640V2|RMD5A_XENTR Protein RMD5 homolog A OS=Xenopus tropicalis GN=rmnd5a PE=2 SV=1 Back     alignment and function description
>sp|Q80YQ8|RMD5A_MOUSE Protein RMD5 homolog A OS=Mus musculus GN=Rmnd5a PE=2 SV=2 Back     alignment and function description
>sp|Q9H871|RMD5A_HUMAN Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1 Back     alignment and function description
>sp|O59668|YB83_SCHPO LisH domain-containing protein C29A3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.03c PE=4 SV=1 Back     alignment and function description
>sp|Q91YQ7|RMD5B_MOUSE Protein RMD5 homolog B OS=Mus musculus GN=Rmnd5b PE=2 SV=1 Back     alignment and function description
>sp|Q96G75|RMD5B_HUMAN Protein RMD5 homolog B OS=Homo sapiens GN=RMND5B PE=2 SV=1 Back     alignment and function description
>sp|Q12508|RMD5_YEAST Sporulation protein RMD5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD5 PE=4 SV=1 Back     alignment and function description
>sp|Q6GR10|MAEA_XENLA Macrophage erythroblast attacher OS=Xenopus laevis GN=maea PE=2 SV=2 Back     alignment and function description
>sp|Q7SXR3|MAEA_DANRE Macrophage erythroblast attacher OS=Danio rerio GN=maea PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query382
224134494385 predicted protein [Populus trichocarpa] 1.0 0.992 0.722 1e-166
224122618388 predicted protein [Populus trichocarpa] 1.0 0.984 0.716 1e-163
356496044386 PREDICTED: protein RMD5 homolog A-like [ 1.0 0.989 0.699 1e-160
356526725386 PREDICTED: protein RMD5 homolog A-like i 1.0 0.989 0.702 1e-160
449451359388 PREDICTED: lisH domain-containing protei 1.0 0.984 0.698 1e-154
388493130386 unknown [Lotus japonicus] 1.0 0.989 0.707 1e-154
388267601386 SymRK interaction E3 ligase [Lotus japon 1.0 0.989 0.702 1e-153
357517091 622 RMD5-like protein [Medicago truncatula] 0.989 0.607 0.669 1e-150
255576005333 Sporulation protein RMD5, putative [Rici 0.853 0.978 0.761 1e-149
225429244383 PREDICTED: protein RMD5 homolog A isofor 0.997 0.994 0.653 1e-141
>gi|224134494|ref|XP_002321837.1| predicted protein [Populus trichocarpa] gi|222868833|gb|EEF05964.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 278/385 (72%), Positives = 325/385 (84%), Gaps = 3/385 (0%)

Query: 1   MELNDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKS---ASHLDDKYVLTEL 57
           M+LN IKDAFDRVAKKQK+S SKTQEV+  ++ EIE +LE +K+    S +D K V  EL
Sbjct: 1   MDLNPIKDAFDRVAKKQKMSGSKTQEVVAQMILEIENSLEIIKAEHFGSEVDCKSVFGEL 60

Query: 58  KRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASH 117
           K++L +IAPL QLEGTQKELNIALSKY K LEKSFNPDI+KAYRNI+FD HTV+QIIA H
Sbjct: 61  KKKLLEIAPLSQLEGTQKELNIALSKYPKQLEKSFNPDIAKAYRNIDFDAHTVNQIIAGH 120

Query: 118 FYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLT 177
           FYRQGLF+VGDCFI+E    E +AA+ S+F +MY ILEAMK+ NLEPAL WA ANS+KL 
Sbjct: 121 FYRQGLFDVGDCFINEANVPESTAAMKSLFSEMYLILEAMKNKNLEPALNWATANSNKLK 180

Query: 178 QNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLE 237
           +NGSDL LKLH LQFVEIL+ GSR +AL Y R +++PF +NH +EIQKLMACL+W+ +L 
Sbjct: 181 ENGSDLLLKLHCLQFVEILQGGSRSKALSYVRTHISPFGANHFSEIQKLMACLLWSGRLH 240

Query: 238 SCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGK 297
             PY  L+S TNW  VAEELTRQFCNL+GQS++SPLSVTIAAG Q LPPLLKFM VMAGK
Sbjct: 241 HSPYSDLLSPTNWNVVAEELTRQFCNLLGQSFDSPLSVTIAAGFQGLPPLLKFMNVMAGK 300

Query: 298 KQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSK 357
           K EWQSMKQLPVPVELD+EFQFHSIFVCPV KEQ++D+NPPM+M CGHVLC+QSINKMSK
Sbjct: 301 KHEWQSMKQLPVPVELDREFQFHSIFVCPVLKEQSTDENPPMLMQCGHVLCKQSINKMSK 360

Query: 358 NHSRTFKCPYCPSDIDAAQCRQLYF 382
           N S+TFKCPYCPSDID+ QCRQL+F
Sbjct: 361 NGSKTFKCPYCPSDIDSTQCRQLHF 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122618|ref|XP_002318881.1| predicted protein [Populus trichocarpa] gi|222859554|gb|EEE97101.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356496044|ref|XP_003516880.1| PREDICTED: protein RMD5 homolog A-like [Glycine max] Back     alignment and taxonomy information
>gi|356526725|ref|XP_003531967.1| PREDICTED: protein RMD5 homolog A-like isoform 1 [Glycine max] gi|356526727|ref|XP_003531968.1| PREDICTED: protein RMD5 homolog A-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449451359|ref|XP_004143429.1| PREDICTED: lisH domain-containing protein C29A3.03c-like [Cucumis sativus] gi|449499826|ref|XP_004160927.1| PREDICTED: lisH domain-containing protein C29A3.03c-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388493130|gb|AFK34631.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388267601|gb|AFK25801.1| SymRK interaction E3 ligase [Lotus japonicus] gi|407080720|gb|AFS89616.1| SIE3 [Lotus japonicus] Back     alignment and taxonomy information
>gi|357517091|ref|XP_003628834.1| RMD5-like protein [Medicago truncatula] gi|355522856|gb|AET03310.1| RMD5-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|255576005|ref|XP_002528898.1| Sporulation protein RMD5, putative [Ricinus communis] gi|223531652|gb|EEF33478.1| Sporulation protein RMD5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225429244|ref|XP_002264694.1| PREDICTED: protein RMD5 homolog A isoform 1 [Vitis vinifera] gi|359475593|ref|XP_003631711.1| PREDICTED: protein RMD5 homolog A isoform 2 [Vitis vinifera] gi|296088090|emb|CBI35449.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query382
TAIR|locus:2137604388 AT4G37880 [Arabidopsis thalian 0.994 0.979 0.607 1.6e-125
TAIR|locus:2066005381 AT2G22690 [Arabidopsis thalian 0.992 0.994 0.572 6.7e-120
TAIR|locus:2144736386 AT5G09630 [Arabidopsis thalian 0.981 0.971 0.468 3.4e-93
DICTYBASE|DDB_G0274829414 rmd5 "protein RMD5 homolog" [D 0.986 0.910 0.323 2.5e-65
MGI|MGI:1915727391 Rmnd5a "required for meiotic n 0.848 0.828 0.363 1.6e-56
POMBASE|SPBC29A3.03c398 SPBC29A3.03c "ubiquitin-protei 0.361 0.346 0.463 7.8e-54
ZFIN|ZDB-GENE-040426-1744391 rmnd5b "required for meiotic n 0.808 0.790 0.354 1.5e-53
MGI|MGI:1913339393 Rmnd5b "required for meiotic n 0.848 0.824 0.335 1.1e-50
ASPGD|ASPL0000054353413 AN0436 [Emericella nidulans (t 0.628 0.581 0.396 8.8e-47
SGD|S000002663421 RMD5 "Component of GID Complex 0.918 0.833 0.251 2.2e-27
TAIR|locus:2137604 AT4G37880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
 Identities = 237/390 (60%), Positives = 305/390 (78%)

Query:     1 MELNDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKAL----ETVKSASHL-DDKYVLT 55
             MEL  IKDAFDRVA KQKLS SKT E++ ++ QEI+KAL    ET  S + L D + +L 
Sbjct:     1 MELKSIKDAFDRVATKQKLSYSKTNEIVHMLSQEIDKALSILEETPSSDTMLLDHRSILA 60

Query:    56 ELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYR-NIEFDTHTVSQII 114
             ++K+   +IAP+ QLE T+KEL+ AL+KY K+LEK  NPDISKAYR N+EFDTH V+QII
Sbjct:    61 DVKKVFMEIAPITQLEATEKELHAALTKYPKVLEKQLNPDISKAYRHNVEFDTHIVNQII 120

Query:   115 ASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSD 174
             A+ FYRQG+F++GDCF++ET ESECS      F +MY+ILEAMK  +LEPAL WA +NSD
Sbjct:   121 ANFFYRQGMFDIGDCFVAETGESECSTR--QSFVEMYRILEAMKRRDLEPALNWAVSNSD 178

Query:   175 KLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWAR 234
             KL +  SDL++KLHSL F+EI R  + +EA+ YAR ++A FA + + EIQKLM  L+W R
Sbjct:   179 KLKEARSDLEMKLHSLHFLEIARGKNSKEAIDYARKHIATFADSCLPEIQKLMCSLLWNR 238

Query:   235 KLESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTV- 293
             KL+  PY + +S   W    +ELTRQ+CNL+G+S ESPLS+T+ AG QALP LLK+M V 
Sbjct:   239 KLDKSPYSEFLSPALWNNAVKELTRQYCNLLGESSESPLSITVTAGTQALPVLLKYMNVV 298

Query:   294 MAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSIN 353
             MA KK +WQ+M+QLPV  +L +EFQFHS+FVCPVSKEQ+SDDNPPM+MSCGHVLC+Q+IN
Sbjct:   299 MANKKLDWQTMEQLPVDAQLSEEFQFHSVFVCPVSKEQSSDDNPPMMMSCGHVLCKQTIN 358

Query:   354 KMSKNHSRT-FKCPYCPSDIDAAQCRQLYF 382
             KMSKN S++ FKCPYCP+D+D ++CRQL+F
Sbjct:   359 KMSKNGSKSSFKCPYCPTDVDISRCRQLHF 388
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2066005 AT2G22690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144736 AT5G09630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274829 rmd5 "protein RMD5 homolog" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1915727 Rmnd5a "required for meiotic nuclear division 5 homolog A (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
POMBASE|SPBC29A3.03c SPBC29A3.03c "ubiquitin-protein ligase E3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1744 rmnd5b "required for meiotic nuclear division 5 homolog B (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1913339 Rmnd5b "required for meiotic nuclear division 5 homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000054353 AN0436 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000002663 RMD5 "Component of GID Complex that confers ubiquitin ligase (U3) activity" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q80YQ8RMD5A_MOUSENo assigned EC number0.35940.82980.8107yesno
O59668YB83_SCHPONo assigned EC number0.31860.89520.8592yesno
Q9H871RMD5A_HUMANNo assigned EC number0.35940.82980.8107yesno
Q640V2RMD5A_XENTRNo assigned EC number0.36810.82980.8107yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00151068
hypothetical protein (385 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
COG5109396 COG5109, COG5109, Uncharacterized conserved protei 3e-45
pfam10607144 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif 3e-42
pfam1344555 pfam13445, zf-RING_LisH, RING-type zinc-finger, Li 3e-20
smart0075799 smart00757, CRA, CT11-RanBPM 1e-17
smart0066858 smart00668, CTLH, C-terminal to LisH motif 3e-11
smart0018440 smart00184, RING, Ring finger 3e-05
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 7e-04
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 0.002
>gnl|CDD|227440 COG5109, COG5109, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information 
 Score =  159 bits (404), Expect = 3e-45
 Identities = 84/405 (20%), Positives = 161/405 (39%), Gaps = 64/405 (15%)

Query: 10  FDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQ 69
            D   K  K    K          E  ++++ ++SA  L +      L            
Sbjct: 24  VDSKLKIDKRRLRK----------ETMRSIDEIRSALSLKNGQEFDTLSH---------- 63

Query: 70  LEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIA--SHFYRQGLFEVG 127
               + +L  +     K   +  N D+    +   F T TV+ ++            +V 
Sbjct: 64  ---AEADLVGSWKSLLKEDCRPANFDVQVGNQIYPFSTQTVTYLVVYYLLENNCA--DVV 118

Query: 128 DCFISETKES-ECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLK 186
           +  ISETK+  +    I   F  + +++  +   +    +++       L++  ++ +L+
Sbjct: 119 ERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFLLIEFLQIEGY-LSKGDTESELE 177

Query: 187 LHSLQFVEILRKGSR-EEALKYARANLAPFASNHVNEIQKLMACLIWARKLESCPYPQLV 245
           L+ +    +L    R +EAL+     LA F   H+ +++ L+      R L + P     
Sbjct: 178 LYLVSHESLLLIHKRYDEALRLCFTKLASFVPKHIQDVKPLL------RFLVNAPTDCFR 231

Query: 246 SQTN----------------------------WVTVAEELTRQFCNLVGQSYESPLSVTI 277
            +                                 + E    ++C   G    SPL   +
Sbjct: 232 HREKELMQNIQEALKKSLIGQPIEDIDKVNKSRKKLIELFKSEYCAANGMPNRSPLRELV 291

Query: 278 AAGVQALPPLLKFMTVMAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNP 337
             G  A   L K  +++  K  +W    +LP+ ++L K   FHS+F+CPV KE  +D+NP
Sbjct: 292 ETGTIAFLQLSKSGSILFDKHVDWTDDSELPMEIKLPKGRHFHSLFICPVLKELCTDENP 351

Query: 338 PMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF 382
           P+++ CGHV+ +++++ +S+N   +FKCPYCP         ++ F
Sbjct: 352 PVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVRF 396

Length = 396
>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain Back     alignment and domain information
>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif Back     alignment and domain information
>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM Back     alignment and domain information
>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 382
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 100.0
KOG0396389 consensus Uncharacterized conserved protein [Funct 100.0
COG5109396 Uncharacterized conserved protein, contains RING Z 100.0
PF10607145 CLTH: CTLH/CRA C-terminal to LisH motif domain; In 99.97
KOG2659228 consensus LisH motif-containing protein [Cytoskele 99.92
smart0075799 CRA CT11-RanBPM. protein-protein interaction domai 99.69
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 99.59
smart0066858 CTLH C-terminal to LisH motif. Alpha-helical motif 99.27
smart0050463 Ubox Modified RING finger domain. Modified RING fi 99.05
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 98.84
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 98.75
PLN03208 193 E3 ubiquitin-protein ligase RMA2; Provisional 98.65
PF1463444 zf-RING_5: zinc-RING finger domain 98.64
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 98.53
PF04641260 Rtf2: Rtf2 RING-finger 98.48
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 98.46
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.37
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.34
KOG0293 519 consensus WD40 repeat-containing protein [Function 98.33
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 98.23
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 98.21
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 98.21
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 98.15
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 98.1
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.1
cd0016245 RING RING-finger (Really Interesting New Gene) dom 98.06
KOG3113 293 consensus Uncharacterized conserved protein [Funct 98.0
KOG0823 230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.97
PHA02929238 N1R/p28-like protein; Provisional 97.81
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.69
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.69
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 97.63
PF0851327 LisH: LisH; InterPro: IPR013720 The LisH motif is 97.62
smart0066734 LisH Lissencephaly type-1-like homology motif. Alp 97.59
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.53
PHA02926242 zinc finger-like protein; Provisional 97.5
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 97.47
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 97.42
KOG3039303 consensus Uncharacterized conserved protein [Funct 97.33
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 97.1
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 96.99
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 96.83
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 96.48
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 96.43
COG5243 491 HRD1 HRD ubiquitin ligase complex, ER membrane com 96.29
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 96.06
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 96.0
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 95.96
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 95.59
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 95.39
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 95.28
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 94.92
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 94.85
KOG1941518 consensus Acetylcholine receptor-associated protei 94.38
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 94.33
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 94.27
COG5152259 Uncharacterized conserved protein, contains RING a 94.19
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 94.13
KOG1785 563 consensus Tyrosine kinase negative regulator CBL [ 93.89
KOG4185 296 consensus Predicted E3 ubiquitin ligase [Posttrans 93.87
KOG2979262 consensus Protein involved in DNA repair [General 93.84
KOG1645 463 consensus RING-finger-containing E3 ubiquitin liga 93.67
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 93.42
COG5222427 Uncharacterized conserved protein, contains RING Z 93.35
PF05290140 Baculo_IE-1: Baculovirus immediate-early protein ( 93.15
COG5175 480 MOT2 Transcriptional repressor [Transcription] 92.87
KOG3800 300 consensus Predicted E3 ubiquitin ligase containing 92.79
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 92.41
KOG3161 861 consensus Predicted E3 ubiquitin ligase [Posttrans 91.61
PF04710416 Pellino: Pellino; InterPro: IPR006800 Pellino is i 91.5
KOG1002 791 consensus Nucleotide excision repair protein RAD16 91.47
KOG3002 299 consensus Zn finger protein [General function pred 90.6
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 89.67
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 89.54
KOG1940276 consensus Zn-finger protein [General function pred 89.0
KOG1477469 consensus SPRY domain-containing proteins [General 88.94
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 88.88
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 88.19
KOG4367 699 consensus Predicted Zn-finger protein [Function un 88.08
KOG0297 391 consensus TNF receptor-associated factor [Signal t 87.5
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 86.58
KOG3842429 consensus Adaptor protein Pellino [Signal transduc 86.27
KOG149384 consensus Anaphase-promoting complex (APC), subuni 85.65
smart00531147 TFIIE Transcription initiation factor IIE. 85.3
PF14353128 CpXC: CpXC protein 85.3
KOG1039 344 consensus Predicted E3 ubiquitin ligase [Posttrans 85.17
KOG2034911 consensus Vacuolar sorting protein PEP3/VPS18 [Int 84.13
PF04494142 TFIID_90kDa: WD40 associated region in TFIID subun 83.05
PF0560554 zf-Di19: Drought induced 19 protein (Di19), zinc-b 81.81
PF09538108 FYDLN_acid: Protein of unknown function (FYDLN_aci 80.7
cd0072934 rubredoxin_SM Rubredoxin, Small Modular nonheme ir 80.69
KOG2910209 consensus Uncharacterized conserved protein predic 80.19
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 80.18
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-93  Score=687.99  Aligned_cols=381  Identities=47%  Similarity=0.857  Sum_probs=357.6

Q ss_pred             CCch--HHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhhcCCC-----ChHHHHHHHHHHHHhhhhhhhhHhh
Q 016792            1 MELN--DIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHL-----DDKYVLTELKRRLQDIAPLGQLEGT   73 (382)
Q Consensus         1 ~~~~--~~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~~~~~~~~~~   73 (382)
                      ||+.  ++++|++||.+||+.+.+.+++.++.+++.+.++...++.....     +....+....+++...++.+++.++
T Consensus         1 M~~~~~sv~~~~~rv~~k~~~~~~~~~~~~~~ll~~~~~~l~~~~~~~~~~~~l~~~~s~~~~~~e~~~~~~~~~~l~~~   80 (394)
T KOG2817|consen    1 MDLKCSSVEDEFDRVDSKQKLYYSNLRDELESLLDDIKKLLSKDNSTISQDLPLSDHESEVVETKEKLRAIQPDTKLAST   80 (394)
T ss_pred             CCchhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHhhcchHHHHHH
Confidence            6765  99999999999999999999999999999999999999874211     2456677777888877889999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChHhhhcc-ccCCHHH-HHHHHHHHHHHhCcHHHHHHHHHHhCCCcch-hhhHHHHHHH
Q 016792           74 QKELNIALSKYTKILEKSFNPDISKAYRN-IEFDTHT-VSQIIASHFYRQGLFEVGDCFISETKESECS-AAILSIFEDM  150 (382)
Q Consensus        74 ~k~~~~~~~k~~k~idk~f~~~l~~~~~~-~~~~~~~-lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~-~~~~~~f~~~  150 (382)
                      ||++|.+++|+||+|||.|++||+.++++ +.++... +|.+|+.||+|+|++|+|+.|++|+|... + ......|.+|
T Consensus        81 ~K~~h~s~sk~~K~ldk~~~~di~~~~~~~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~-~~~~~~~~F~el  159 (394)
T KOG2817|consen   81 HKDLHGSLSKFGKALDKNFNPDISSVYRNSVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSE-DESKSRTEFVEL  159 (394)
T ss_pred             HHHHHHHHHHHHHHHhhccCcchhhHhhcCcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCC-cchhhhhhHHHH
Confidence            99999999999999999999999999984 6666544 59999999999999999999999999986 4 5678899999


Q ss_pred             HHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHH--HHHHHHHHhcCCchhhhHHHHHHHHH
Q 016792          151 YQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSRE--EALKYARANLAPFASNHVNEIQKLMA  228 (382)
Q Consensus       151 ~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~--eAl~yar~~l~~f~~~~~~eiq~lm~  228 (382)
                      ++|+++|+.||++||++|+..|+..|.+.+|+|||.||+++|+++++.|...  +||.|||+||+||+.+|..|||.+|+
T Consensus       160 ~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~  239 (394)
T KOG2817|consen  160 NQIVEALKERDLEPALEWAESNRQKLKEKSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG  239 (394)
T ss_pred             HHHHHHHHhccchhHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999765  99999999999999999999999999


Q ss_pred             hHcccCC-CCCCCchhhcccCChHHHHHHHHHHHHHHhCCCCCChHHHHHHhhhccccchhhhhhhhccccccccccCCC
Q 016792          229 CLIWARK-LESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKKQEWQSMKQL  307 (382)
Q Consensus       229 ~L~f~~~-~~~spy~~Ll~~~~w~~l~~~F~~e~c~l~gls~~spL~~~~~aG~~aLpt~~k~~~~~~~~~~~~~~~~eL  307 (382)
                      +|+|..+ ++.|||.+++++..|.++.+.|+++||+++|+|.+|||.+++.||++|||++++|.+||..+.++|++.+||
T Consensus       240 sl~~l~~gl~~spy~~~ls~~~w~~~~~~f~r~ycallg~s~eSPL~v~v~aG~~Alp~Llk~~~v~~~~~~~W~~~deL  319 (394)
T KOG2817|consen  240 SLLYLRNGLEKSPYSEILSPKLWKELTEEFTREYCALLGISVESPLSVLVNAGCIALPQLLKYKSVMELKHGEWNTKDEL  319 (394)
T ss_pred             HHHHHHcCCCCCChHHHhCHHHHHHHHHHHHHHHHHHcCCCccCcHHHHHHhhHHHHHHHHHHHHHHHHhccCccccccC
Confidence            9999865 689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCcccccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccccccC
Q 016792          308 PVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF  382 (382)
Q Consensus       308 p~~i~Lp~~~~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v~f  382 (382)
                      |+||+||++++|||+|+|||+++|++++||||+|+||||||+++|++|++++..+|||||||.+..+++++||||
T Consensus       320 PveIeL~~~~~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F  394 (394)
T KOG2817|consen  320 PVEIELGKEYHFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF  394 (394)
T ss_pred             ccceeccccccccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence            999999999999999999999999999999999999999999999999998865699999999999999999998

>KOG0396 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 Back     alignment and domain information
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton] Back     alignment and domain information
>smart00757 CRA CT11-RanBPM Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>smart00668 CTLH C-terminal to LisH motif Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG3113 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions Back     alignment and domain information
>smart00667 LisH Lissencephaly type-1-like homology motif Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2979 consensus Protein involved in DNA repair [General function prediction only] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only] Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms] Back     alignment and domain information
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00531 TFIIE Transcription initiation factor IIE Back     alignment and domain information
>PF14353 CpXC: CpXC protein Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID Back     alignment and domain information
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins Back     alignment and domain information
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues Back     alignment and domain information
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase Back     alignment and domain information
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 9e-05
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 1e-04
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 1e-04
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 7e-04
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 318 QFHSIFVCPVSKEQ-TSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQ 376
               +  CP+  E  T +   P ++ CGH +CRQ + K+  +     +CP+C        
Sbjct: 11  ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70

Query: 377 CRQL 380
             QL
Sbjct: 71  LTQL 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query382
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 98.99
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 98.97
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 98.94
2ysl_A73 Tripartite motif-containing protein 31; ring-type 98.93
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 98.92
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 98.92
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 98.92
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 98.92
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 98.88
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 98.87
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 98.85
2f42_A179 STIP1 homology and U-box containing protein 1; cha 98.85
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 98.84
2ysj_A63 Tripartite motif-containing protein 31; ring-type 98.8
2ecw_A85 Tripartite motif-containing protein 30; metal bind 98.8
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 98.8
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 98.8
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 98.8
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 98.79
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 98.78
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 98.72
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 98.69
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 98.69
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 98.65
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 98.64
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 98.64
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 98.6
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 98.59
1z6u_A150 NP95-like ring finger protein isoform B; structura 98.59
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 98.57
2ecm_A55 Ring finger and CHY zinc finger domain- containing 98.55
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 98.54
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 98.54
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 98.53
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 98.51
2ect_A78 Ring finger protein 126; metal binding protein, st 98.51
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 98.48
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 98.47
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 98.46
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 98.46
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 98.44
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 98.43
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 98.39
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 98.37
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 98.37
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 98.36
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 98.35
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.34
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 98.33
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 98.29
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 98.29
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 98.27
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 98.26
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 98.21
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.19
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 98.13
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 98.11
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 98.11
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 98.1
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 98.03
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 97.96
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 97.93
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 97.85
2ea5_A68 Cell growth regulator with ring finger domain prot 97.7
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 97.63
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 97.62
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 97.47
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 96.42
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 96.15
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 95.64
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 94.66
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 94.01
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 93.99
4ayb_P48 DNA-directed RNA polymerase; transferase, multi-su 92.99
1uuj_A88 Platelet-activating factor acetylhydrolase IB ALP 92.28
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 91.98
2k5c_A95 Uncharacterized protein PF0385; structural genomic 91.24
2nxp_A156 Transcription initiation factor TFIID subunit 5; t 85.27
2xtc_A90 F-box-like/WD repeat-containing protein TBL1X; tra 83.89
2ca5_A85 MXIH; transport protein, type III secretion system 83.62
3nw0_A238 Non-structural maintenance of chromosomes element 81.53
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=98.99  E-value=3.5e-10  Score=88.25  Aligned_cols=63  Identities=25%  Similarity=0.725  Sum_probs=52.9

Q ss_pred             ccccceeccccccccCCCC-CCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccccc
Q 016792          318 QFHSIFVCPVSKEQTSDDN-PPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQL  380 (382)
Q Consensus       318 ~~hS~~~Cpi~~~~~~~~N-pp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v  380 (382)
                      .....+.||||.+.+.+.+ .|+++||||+||..|+.+|.+...+..+||+|+..+...+++.+
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l   74 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL   74 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred             hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence            3566789999999987655 49999999999999999998765446899999999988877654
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X Back     alignment and structure
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} Back     alignment and structure
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 Back     alignment and structure
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A Back     alignment and structure
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A Back     alignment and structure
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 382
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 2e-06
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 3e-06
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 1e-04
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 3e-04
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 0.001
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 0.001
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 0.004
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 303 SMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRT 362
           + +Q  +  E+   FQ     +C +  E   D     I  CGH++C   +    ++  + 
Sbjct: 9   TQEQYELYCEMGSTFQ-----LCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQG 60

Query: 363 FKCPYCPSDID 373
             CP+C  +I 
Sbjct: 61  --CPFCRCEIK 69
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query382
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 99.0
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.97
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.96
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.93
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.91
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.79
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.7
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 98.68
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.61
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.55
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.47
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.43
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.2
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.2
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 98.0
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 97.74
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.53
d1uuja_76 Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te 93.38
d2nxpa1149 TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId 87.73
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 86.41
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=7.8e-11  Score=83.17  Aligned_cols=53  Identities=9%  Similarity=0.268  Sum_probs=46.3

Q ss_pred             eeccccccccCCCCCCeecc-CchhhhHHHHHHHHhcCCCccccCCCCCcCCcccccccc
Q 016792          323 FVCPVSKEQTSDDNPPMIMS-CGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLY  381 (382)
Q Consensus       323 ~~Cpi~~~~~~~~Npp~~l~-cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v~  381 (382)
                      ++||||++.+.+   ||++| |||+|++++|.+|.+.+   .+||.|++..+.+++.++.
T Consensus         1 l~C~Ic~~~~~~---Pv~~~~cGh~fc~~cI~~~l~~~---~~CP~c~~~l~~~dLipik   54 (56)
T d2baya1           1 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDT---GNDPITNEPLSIEEIVEIV   54 (56)
T ss_dssp             CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHH---SBCTTTCCBCCGGGCEECC
T ss_pred             CCCccCCchHHh---cCccCCCCCcccHHHHHHHHhhc---cCCCccCCcCCHHhceeCC
Confidence            589999999976   88875 99999999999998764   3899999999999987663
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure