Citrus Sinensis ID: 016830

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
MAVATGSSSCCKLAKPCAFTTSNSSQSPFKLKKFTASPAKSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSWT
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHcccccccccccEEEEEEccccccccccccccccccccEEEEccEEEEEcccccccccccccccccccccc
cccccccccccccccccEEEcccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccEccEEEEEccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccEEEcHHHHHHHHcccccccEEEEEEHHHccccEccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHccEEEEEEEHHHHHHcHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHcccEEEccccccccccHHHHHHHcccHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHccccccEEEEEEEEEccHHHcccccHHHHcEEEEEcEEEEEEcEcccccEcccccccHHHccccc
mavatgsssccklakpcafttsnssqspfklkkftaspakstsirctiardpvvpmeakkesdpapwqrpdvfgrfgrfggkfvpETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTehyrrpngggphiylkredlnhtgahkINNAVGQALLAKRLGKTRiiaetgagqhgvATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVhsgtatlkdATSEAIRDWVTNVETTHYIlgsvagphpypmmVRDFHAVIGKETRRQALEkwggkpdvliacvgggsnamglfhefvndkdvrLIGVEAagfgldsgkhaatlskgeVGVLHGALSYLlqnedgqiiephsisaglpwswt
mavatgsssccklakpcafttsnssqspfklkkftaspakstsirctiardpvvpmeakkesdpapwqrpdVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERltehyrrpngggpHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAEtgagqhgvaTATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHsgtatlkdatseaIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNedgqiiephsisaglpwswt
MAVATGSSSCCKLAKPCAFTTSNSSQSPFKLKKFTASPAKSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVfgrfgrfggkfVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSWT
********************************************************************RPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACV*********FHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGL*****
***********************************************************************VFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSW*
**********CKLAKPCAFTTSNSSQSPFKLKK*********SIRCTIARDPVVP**********PWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSWT
*********CCKLAKPCAFTTSNSSQSPFKLKKFTASPAKSTSIRCTIARDPVVPMEAK**SDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSWT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAVATGSSSCCKLAKPCAFTTSNSSQSPFKLKKFTASPAKSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRFGGKFVPETLMYAxxxxxxxxxxxxxxxxxxxxxSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSWT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query382 2.2.26 [Sep-21-2011]
P14671470 Tryptophan synthase beta yes no 0.921 0.748 0.835 1e-177
P25269475 Tryptophan synthase beta no no 0.976 0.785 0.772 1e-175
O50046466 Tryptophan synthase beta N/A no 0.926 0.759 0.822 1e-173
P43284443 Tryptophan synthase beta N/A no 0.816 0.704 0.855 1e-162
P43283389 Tryptophan synthase beta N/A no 0.793 0.778 0.858 1e-156
Q3MBV3413 Tryptophan synthase beta yes no 0.832 0.769 0.792 1e-150
Q8YQM6413 Tryptophan synthase beta yes no 0.832 0.769 0.786 1e-149
Q118P8409 Tryptophan synthase beta yes no 0.829 0.775 0.779 1e-149
Q8YZP7409 Tryptophan synthase beta no no 0.814 0.760 0.771 1e-145
Q8DG49410 Tryptophan synthase beta yes no 0.811 0.756 0.787 1e-143
>sp|P14671|TRPB1_ARATH Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1 Back     alignment and function desciption
 Score =  619 bits (1597), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 300/359 (83%), Positives = 324/359 (90%), Gaps = 7/359 (1%)

Query: 26  QSPFKLKKFTASPAKSTSIR-----CTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRFG 80
           +SPFK  K+T  P+  +        CTIA+DP V M A   SDPA WQRPD FGRFG+FG
Sbjct: 28  KSPFKAVKYTPLPSSRSKSSSFSVSCTIAKDPPVLMAAG--SDPALWQRPDSFGRFGKFG 85

Query: 81  GKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPN 140
           GK+VPETLM+ALSELESA + LA D DFQ EL+GIL+DYVGRE+PLYFAERLTEHYRR N
Sbjct: 86  GKYVPETLMHALSELESAFYALATDDDFQRELAGILKDYVGRESPLYFAERLTEHYRREN 145

Query: 141 GGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFG 200
           G GP IYLKREDLNHTGAHKINNAV QALLAKRLGK RIIAETGAGQHGVATATVCARFG
Sbjct: 146 GEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFG 205

Query: 201 LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYI 260
           L+CI+YMGAQDMERQALNVFRMRLLGAEVR VHSGTATLKDATSEAIRDWVTNVETTHYI
Sbjct: 206 LECIIYMGAQDMERQALNVFRMRLLGAEVRGVHSGTATLKDATSEAIRDWVTNVETTHYI 265

Query: 261 LGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVND 320
           LGSVAGPHPYPMMVRDFHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEFVND
Sbjct: 266 LGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVND 325

Query: 321 KDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPW 379
            +VR+IGVEAAGFGLDSGKHAATL+KG+VGVLHGA+SYLLQ++DGQIIEPHSISAGL +
Sbjct: 326 TEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSISAGLDY 384
The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 0
>sp|P25269|TRBP2_ARATH Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2 Back     alignment and function description
>sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1 Back     alignment and function description
>sp|P43284|TRPB2_MAIZE Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1 Back     alignment and function description
>sp|P43283|TRPB1_MAIZE Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1 Back     alignment and function description
>sp|Q3MBV3|TRPB_ANAVT Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1 Back     alignment and function description
>sp|Q8YQM6|TRPB2_NOSS1 Tryptophan synthase beta chain 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpB2 PE=3 SV=1 Back     alignment and function description
>sp|Q118P8|TRPB_TRIEI Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1 Back     alignment and function description
>sp|Q8YZP7|TRPB1_NOSS1 Tryptophan synthase beta chain 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpB1 PE=3 SV=1 Back     alignment and function description
>sp|Q8DG49|TRPB_THEEB Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query382
449485373472 PREDICTED: tryptophan synthase beta chai 0.937 0.758 0.812 1e-176
449449611472 PREDICTED: tryptophan synthase beta chai 0.937 0.758 0.812 1e-175
297796355471 tryptophan synthase beta-subunit [Arabid 0.918 0.745 0.843 1e-175
15239755470 tryptophan synthase beta chain [Arabidop 0.921 0.748 0.835 1e-175
15236977475 tryptophan synthase beta chain [Arabidop 0.976 0.785 0.772 1e-173
297803394471 tryptophan synthase beta-subunit [Arabid 0.955 0.774 0.794 1e-173
3915165466 RecName: Full=Tryptophan synthase beta c 0.926 0.759 0.822 1e-171
356567382471 PREDICTED: tryptophan synthase beta chai 0.929 0.753 0.810 1e-171
57157621474 tryptophan synthase beta subunit [Polygo 0.934 0.753 0.799 1e-170
225461050458 PREDICTED: tryptophan synthase beta chai 0.913 0.762 0.816 1e-169
>gi|449485373|ref|XP_004157148.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 294/362 (81%), Positives = 331/362 (91%), Gaps = 4/362 (1%)

Query: 21  TSNSSQSPFKLKKFTASPA---KSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVFGRFG 77
           +S++S  P + ++ +++P+   +S ++ CT+ R+P + ME  K  D +  QRPD FGRFG
Sbjct: 26  SSSTSHFPVRFRRVSSNPSPVFRSNAVSCTLTREPSLAME-DKVHDSSLQQRPDSFGRFG 84

Query: 78  RFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYR 137
           RFGGK+VPETLM+AL+ELE+A + LA D+DFQ+EL GILRDYVGRE+PLYFAERLTEHYR
Sbjct: 85  RFGGKYVPETLMHALTELETAFYSLAGDQDFQKELDGILRDYVGRESPLYFAERLTEHYR 144

Query: 138 RPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCA 197
           R NG GPHI+LKREDLNHTGAHKINNAV QALLAKRLGK RIIAETGAGQHGVATATVCA
Sbjct: 145 RSNGEGPHIFLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCA 204

Query: 198 RFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETT 257
           RFGL+CI+YMGAQDMERQALNVFRM+LLGAEVR VHSGTATLKDATSEAIRDWVTNVETT
Sbjct: 205 RFGLECIIYMGAQDMERQALNVFRMQLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETT 264

Query: 258 HYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEF 317
           HYILGSVAGPHPYPMMVRDFHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEF
Sbjct: 265 HYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEF 324

Query: 318 VNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGL 377
           VNDKDVRL+GVEAAGFGLDSGKHAATL+KGEVGVLHGA+SYLLQ++DGQIIEPHSISAGL
Sbjct: 325 VNDKDVRLVGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGL 384

Query: 378 PW 379
            +
Sbjct: 385 DY 386

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449449611|ref|XP_004142558.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297796355|ref|XP_002866062.1| tryptophan synthase beta-subunit [Arabidopsis lyrata subsp. lyrata] gi|297311897|gb|EFH42321.1| tryptophan synthase beta-subunit [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15239755|ref|NP_200292.1| tryptophan synthase beta chain [Arabidopsis thaliana] gi|136251|sp|P14671.1|TRPB1_ARATH RecName: Full=Tryptophan synthase beta chain 1, chloroplastic; Flags: Precursor gi|14194117|gb|AAK56253.1|AF367264_1 AT5g54810/MBG8_7 [Arabidopsis thaliana] gi|166892|gb|AAA32878.1| tryptophan synthase beta subunit [Arabidopsis thaliana] gi|9758261|dbj|BAB08760.1| tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana] gi|21592983|gb|AAM64932.1| tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana] gi|22137210|gb|AAM91450.1| AT5g54810/MBG8_7 [Arabidopsis thaliana] gi|110742593|dbj|BAE99210.1| tryptophan synthase beta chain 1 precursor [Arabidopsis thaliana] gi|332009160|gb|AED96543.1| tryptophan synthase beta chain [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15236977|ref|NP_194437.1| tryptophan synthase beta chain [Arabidopsis thaliana] gi|1174779|sp|P25269.2|TRBP2_ARATH RecName: Full=Tryptophan synthase beta chain 2, chloroplastic; Flags: Precursor gi|166894|gb|AAA32879.1| tryptophan synthase beta-subunit [Arabidopsis thaliana] gi|4490703|emb|CAB38837.1| tryptophan synthase beta-subunit (TSB2) [Arabidopsis thaliana] gi|7269560|emb|CAB79562.1| tryptophan synthase beta-subunit (TSB2) [Arabidopsis thaliana] gi|21536585|gb|AAM60917.1| tryptophan synthase beta-subunit TSB2 [Arabidopsis thaliana] gi|27808592|gb|AAO24576.1| At4g27070 [Arabidopsis thaliana] gi|110736231|dbj|BAF00086.1| tryptophan synthase beta-subunit [Arabidopsis thaliana] gi|332659896|gb|AEE85296.1| tryptophan synthase beta chain [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297803394|ref|XP_002869581.1| tryptophan synthase beta-subunit [Arabidopsis lyrata subsp. lyrata] gi|297315417|gb|EFH45840.1| tryptophan synthase beta-subunit [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|3915165|sp|O50046.1|TRPB_CAMAC RecName: Full=Tryptophan synthase beta chain 2, chloroplastic; Flags: Precursor gi|2792520|gb|AAB97087.1| tryptophan synthase beta subunit [Camptotheca acuminata] gi|2801771|gb|AAB97526.1| tryptophan synthase beta [Camptotheca acuminata] Back     alignment and taxonomy information
>gi|356567382|ref|XP_003551899.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|57157621|dbj|BAD83779.1| tryptophan synthase beta subunit [Polygonum tinctorium] Back     alignment and taxonomy information
>gi|225461050|ref|XP_002281484.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query382
TAIR|locus:2160190470 TSB1 "tryptophan synthase beta 0.979 0.795 0.778 4e-154
TAIR|locus:2005543475 TSB2 "tryptophan synthase beta 0.981 0.789 0.754 1.4e-151
TAIR|locus:1006230667465 AT5G28237 "AT5G28237" [Arabido 0.767 0.630 0.645 6.7e-104
TIGR_CMR|DET_1487399 DET_1487 "tryptophan synthase, 0.761 0.729 0.658 6e-103
TIGR_CMR|CHY_1582402 CHY_1582 "tryptophan synthase, 0.803 0.763 0.610 7.1e-100
TIGR_CMR|BA_1253397 BA_1253 "tryptophan synthase, 0.756 0.727 0.634 3.1e-99
TIGR_CMR|SPO_0808416 SPO_0808 "tryptophan synthase, 0.761 0.699 0.609 1.3e-93
ASPGD|ASPL0000007723723 trpB [Emericella nidulans (tax 0.759 0.401 0.604 4.3e-93
UNIPROTKB|P66984422 trpB "Tryptophan synthase beta 0.761 0.689 0.591 5e-92
CGD|CAL0004378 702 TRP5 [Candida albicans (taxid: 0.759 0.413 0.585 1.1e-89
TAIR|locus:2160190 TSB1 "tryptophan synthase beta-subunit 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1503 (534.1 bits), Expect = 4.0e-154, P = 4.0e-154
 Identities = 299/384 (77%), Positives = 330/384 (85%)

Query:     4 ATGSSSCCKLAKPCAFTTSNSS---QSPFKLKKFTASPA---KSTS--IRCTIARDPVVP 55
             A+G+S+  + +   A ++S+     +SPFK  K+T  P+   KS+S  + CTIA+DP V 
Sbjct:     3 ASGTSATFRASVSSAPSSSSQLTHLKSPFKAVKYTPLPSSRSKSSSFSVSCTIAKDPPVL 62

Query:    56 MEAKKESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGI 115
             M A   SDPA WQRPD            VPETLM+ALSELESA + LA D DFQ EL+GI
Sbjct:    63 MAAG--SDPALWQRPDSFGRFGKFGGKYVPETLMHALSELESAFYALATDDDFQRELAGI 120

Query:   116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG 175
             L+DYVGRE+PLYFAERLTEHYRR NG GP IYLKREDLNHTGAHKINNAV QALLAKRLG
Sbjct:   121 LKDYVGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLG 180

Query:   176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235
             K RIIAETGAGQHGVATATVCARFGL+CI+YMGAQDMERQALNVFRMRLLGAEVR VHSG
Sbjct:   181 KKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRGVHSG 240

Query:   236 TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGG 295
             TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETR+QALEKWGG
Sbjct:   241 TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGG 300

Query:   296 KPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGA 355
             KPDVL+ACVGGGSNAMGLFHEFVND +VR+IGVEAAGFGLDSGKHAATL+KG+VGVLHGA
Sbjct:   301 KPDVLVACVGGGSNAMGLFHEFVNDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGA 360

Query:   356 LSYLLQNEDGQIIEPHSISAGLPW 379
             +SYLLQ++DGQIIEPHSISAGL +
Sbjct:   361 MSYLLQDDDGQIIEPHSISAGLDY 384
GO:0003824 "catalytic activity" evidence=IEA
GO:0004834 "tryptophan synthase activity" evidence=IEA;IMP;IDA
GO:0006568 "tryptophan metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
GO:0009651 "response to salt stress" evidence=IEP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0000162 "tryptophan biosynthetic process" evidence=TAS
GO:0009684 "indoleacetic acid biosynthetic process" evidence=TAS
GO:0006979 "response to oxidative stress" evidence=IEP
TAIR|locus:2005543 TSB2 "tryptophan synthase beta-subunit 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230667 AT5G28237 "AT5G28237" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1487 DET_1487 "tryptophan synthase, beta subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1582 CHY_1582 "tryptophan synthase, beta subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1253 BA_1253 "tryptophan synthase, beta subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0808 SPO_0808 "tryptophan synthase, beta subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007723 trpB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|P66984 trpB "Tryptophan synthase beta chain" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
CGD|CAL0004378 TRP5 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8YQM6TRPB2_NOSS14, ., 2, ., 1, ., 2, 00.78610.83240.7699yesno
Q118P8TRPB_TRIEI4, ., 2, ., 1, ., 2, 00.77910.82980.7750yesno
O50046TRPB_CAMAC4, ., 2, ., 1, ., 2, 00.82270.92670.7596N/Ano
C1DH66TRPB_AZOVD4, ., 2, ., 1, ., 2, 00.65800.79840.7512yesno
Q59992TRPB_SYNY34, ., 2, ., 1, ., 2, 00.75320.81670.7572N/Ano
P43283TRPB1_MAIZE4, ., 2, ., 1, ., 2, 00.85800.79310.7789N/Ano
P43284TRPB2_MAIZE4, ., 2, ., 1, ., 2, 00.85570.81670.7042N/Ano
B8DHB4TRPB_LISMH4, ., 2, ., 1, ., 2, 00.62300.80620.77yesno
Q3AW11TRPB_SYNS94, ., 2, ., 1, ., 2, 00.71420.83240.7607yesno
B1YLS4TRPB_EXIS24, ., 2, ., 1, ., 2, 00.61020.80620.7719yesno
B7L1H4TRPB_METC44, ., 2, ., 1, ., 2, 00.63660.82980.7675yesno
A5GP60TRPB_SYNPW4, ., 2, ., 1, ., 2, 00.74520.82980.7620yesno
Q8DG49TRPB_THEEB4, ., 2, ., 1, ., 2, 00.78770.81150.7560yesno
A2BNV9TRPB_PROMS4, ., 2, ., 1, ., 2, 00.71470.81410.7512yesno
P14671TRPB1_ARATH4, ., 2, ., 1, ., 2, 00.83560.92140.7489yesno
A9BD24TRPB_PROM44, ., 2, ., 1, ., 2, 00.70310.83500.7668yesno
Q7TUL2TRPB_PROMM4, ., 2, ., 1, ., 2, 00.73120.83500.7316yesno
B0K8T6TRPB_THEP34, ., 2, ., 1, ., 2, 00.64050.78790.7698yesno
Q7TUH0TRPB_PROMP4, ., 2, ., 1, ., 2, 00.68500.85340.7874yesno
Q31D17TRPB_PROM94, ., 2, ., 1, ., 2, 00.69870.81410.7512yesno
Q7NGX9TRPB_GLOVI4, ., 2, ., 1, ., 2, 00.71610.79840.7367yesno
B0UIA8TRPB_METS44, ., 2, ., 1, ., 2, 00.64510.79840.7512yesno
Q2JLD7TRPB_SYNJB4, ., 2, ., 1, ., 2, 00.72950.81670.7341yesno
A8G2H0TRPB_PROM24, ., 2, ., 1, ., 2, 00.70510.81410.7512yesno
Q8R9M9TRPB_THETN4, ., 2, ., 1, ., 2, 00.65350.78790.7698yesno
Q4KKP4TRPB_PSEF54, ., 2, ., 1, ., 2, 00.65160.79840.7512yesno
Q7VE26TRPB_PROMA4, ., 2, ., 1, ., 2, 00.72340.81150.7451yesno
Q8ESU4TRPB_OCEIH4, ., 2, ., 1, ., 2, 00.61660.80620.7719yesno
Q3AGY2TRPB_SYNSC4, ., 2, ., 1, ., 2, 00.73430.82720.7559yesno
Q3KK59TRPB_PSEPF4, ., 2, ., 1, ., 2, 00.64830.79840.7439yesno
P07345TRPB_PSEAE4, ., 2, ., 1, ., 2, 00.66770.79840.7587yesno
A2BUE1TRPB_PROM54, ., 2, ., 1, ., 2, 00.70510.81410.7512yesno
A3PAN2TRPB_PROM04, ., 2, ., 1, ., 2, 00.71470.81410.7512yesno
Q604P3TRPB_METCA4, ., 2, ., 1, ., 2, 00.64330.80890.7629yesno
B4RCL0TRPB_PHEZH4, ., 2, ., 1, ., 2, 00.67410.79840.7512yesno
A2BZZ2TRPB_PROM14, ., 2, ., 1, ., 2, 00.7250.83760.7673yesno
Q97EF5TRPB_CLOAB4, ., 2, ., 1, ., 2, 00.62410.78790.7639yesno
Q3MBV3TRPB_ANAVT4, ., 2, ., 1, ., 2, 00.79240.83240.7699yesno
Q7TTS6TRPB_SYNPX4, ., 2, ., 1, ., 2, 00.73120.82720.7559yesno
Q8Y6Q6TRPB_LISMO4, ., 2, ., 1, ., 2, 00.62300.80620.77yesno
A6TM76TRPB_ALKMQ4, ., 2, ., 1, ., 2, 00.64260.78530.75yesno
Q0I6V1TRPB_SYNS34, ., 2, ., 1, ., 2, 00.73750.82720.7559yesno
B0K2T9TRPB_THEPX4, ., 2, ., 1, ., 2, 00.64370.78790.7698yesno
B7J4S9TRPB_ACIF24, ., 2, ., 1, ., 2, 00.64210.80620.7719yesno
O66923TRPB1_AQUAE4, ., 2, ., 1, ., 2, 00.65810.80620.7758yesno
Q46HK9TRPB_PROMT4, ., 2, ., 1, ., 2, 00.72180.83760.7673yesno
B5EK18TRPB_ACIF54, ., 2, ., 1, ., 2, 00.64210.80620.7719yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.2.1.200.991
3rd Layer4.2.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.8__1378__AT5G54810.1
annotation not avaliable (471 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
scaffold_601857.1
annotation not avaliable (444 aa)
• •• •• 0.978
fgenesh2_kg.8__689__AT5G48220.1
annotation not avaliable (375 aa)
•••• •• 0.969
scaffold_604010.1
annotation not avaliable (276 aa)
••••••• 0.968
fgenesh2_kg.6__493__AT1G07780.3
annotation not avaliable (275 aa)
•••   • 0.962
fgenesh2_kg.3__2787__AT2G04400.1
annotation not avaliable (402 aa)
•••• •• 0.959
fgenesh2_kg.5__1860__AT3G54640.1
annotation not avaliable (313 aa)
••••••• 0.959
fgenesh1_pg.C_scaffold_5002065
annotation not avaliable (520 aa)
•  •  • 0.895
fgenesh2_kg.6__508__AT5G05730.1
annotation not avaliable (596 aa)
•  •  • 0.878
fgenesh2_kg.4__945__AT2G29690.1
annotation not avaliable (622 aa)
•  •  • 0.858
fgenesh2_kg.1__2814__AT5G57890.1
annotation not avaliable (277 aa)
•    •• 0.837

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
PLN02618410 PLN02618, PLN02618, tryptophan synthase, beta chai 0.0
PRK04346397 PRK04346, PRK04346, tryptophan synthase subunit be 0.0
COG0133396 COG0133, TrpB, Tryptophan synthase beta chain [Ami 0.0
cd06446365 cd06446, Trp-synth_B, Tryptophan synthase-beta: Tr 0.0
PRK13028402 PRK13028, PRK13028, tryptophan synthase subunit be 0.0
TIGR00263385 TIGR00263, trpB, tryptophan synthase, beta subunit 0.0
PRK13803610 PRK13803, PRK13803, bifunctional phosphoribosylant 1e-178
PRK13802 695 PRK13802, PRK13802, bifunctional indole-3-glycerol 1e-122
cd00640244 cd00640, Trp-synth-beta_II, Tryptophan synthase be 8e-55
PRK12391427 PRK12391, PRK12391, tryptophan synthase subunit be 6e-47
COG1350432 COG1350, COG1350, Predicted alternative tryptophan 2e-41
TIGR01415419 TIGR01415, trpB_rel, pyridoxal-phosphate dependent 9e-40
pfam00291295 pfam00291, PALP, Pyridoxal-phosphate dependent enz 2e-29
cd01562304 cd01562, Thr-dehyd, Threonine dehydratase: The fir 5e-15
COG1171347 COG1171, IlvA, Threonine dehydratase [Amino acid t 8e-15
cd01561291 cd01561, CBS_like, CBS_like: This subgroup include 8e-13
COG2515323 COG2515, Acd, 1-aminocyclopropane-1-carboxylate de 2e-11
cd01563324 cd01563, Thr-synth_1, Threonine synthase is a pyri 6e-11
COG0031300 COG0031, CysK, Cysteine synthase [Amino acid trans 5e-10
cd06449307 cd06449, ACCD, Aminocyclopropane-1-carboxylate dea 6e-10
PRK03910331 PRK03910, PRK03910, D-cysteine desulfhydrase; Vali 8e-10
PRK08639 420 PRK08639, PRK08639, threonine dehydratase; Validat 3e-09
TIGR02079 409 TIGR02079, THD1, threonine dehydratase 3e-09
PRK06815317 PRK06815, PRK06815, hypothetical protein; Provisio 8e-09
cd06448316 cd06448, L-Ser-dehyd, Serine dehydratase is a pyri 1e-07
PRK08246310 PRK08246, PRK08246, threonine dehydratase; Provisi 6e-07
PRK06608338 PRK06608, PRK06608, threonine dehydratase; Provisi 6e-07
TIGR01139298 TIGR01139, cysK, cysteine synthase A 1e-05
TIGR01275318 TIGR01275, ACC_deam_rel, pyridoxal phosphate-depen 1e-05
PRK07476322 PRK07476, eutB, threonine dehydratase; Provisional 2e-05
COG0498411 COG0498, ThrC, Threonine synthase [Amino acid tran 3e-05
PRK12483 521 PRK12483, PRK12483, threonine dehydratase; Reviewe 5e-05
PRK08197394 PRK08197, PRK08197, threonine synthase; Validated 6e-05
PRK08526 403 PRK08526, PRK08526, threonine dehydratase; Provisi 6e-05
PRK12390337 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxyl 8e-05
PRK08813349 PRK08813, PRK08813, threonine dehydratase; Provisi 9e-05
TIGR01136299 TIGR01136, cysKM, cysteine synthase 1e-04
TIGR03945304 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio 3e-04
TIGR02991317 TIGR02991, ectoine_eutB, ectoine utilization prote 5e-04
TIGR01274337 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxy 6e-04
TIGR01127 380 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, m 0.001
PRK08198 404 PRK08198, PRK08198, threonine dehydratase; Provisi 0.004
>gnl|CDD|215333 PLN02618, PLN02618, tryptophan synthase, beta chain Back     alignment and domain information 
 Score =  673 bits (1738), Expect = 0.0
 Identities = 282/317 (88%), Positives = 302/317 (95%)

Query: 61  ESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYV 120
            SDP  +QRPD FGRFG+FGGK+VPETLM ALSELE+A + LA D +FQEEL+GIL+DYV
Sbjct: 4   GSDPTGFQRPDSFGRFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYV 63

Query: 121 GRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRII 180
           GRETPLYFAERLTEHY+R +G GP IYLKREDLNHTGAHKINNAV QALLAKRLGK RII
Sbjct: 64  GRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRII 123

Query: 181 AETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLK 240
           AETGAGQHGVATATVCARFGL+CIVYMGAQDMERQALNVFRMRLLGAEVR VHSGTATLK
Sbjct: 124 AETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLK 183

Query: 241 DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVL 300
           DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH+VIGKETRRQA+EKWGGKPDVL
Sbjct: 184 DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVL 243

Query: 301 IACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLL 360
           +ACVGGGSNAMGLFHEF++D+DVRLIGVEAAGFGLDSGKHAATL+KGEVGVLHGA+SYLL
Sbjct: 244 VACVGGGSNAMGLFHEFIDDEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLL 303

Query: 361 QNEDGQIIEPHSISAGL 377
           Q+EDGQIIEPHSISAGL
Sbjct: 304 QDEDGQIIEPHSISAGL 320

Length = 410
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit Back     alignment and domain information
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme Back     alignment and domain information
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated Back     alignment and domain information
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated Back     alignment and domain information
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase Back     alignment and domain information
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A Back     alignment and domain information
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed Back     alignment and domain information
>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|183494 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase Back     alignment and domain information
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA Back     alignment and domain information
>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB Back     alignment and domain information
>gnl|CDD|130341 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form Back     alignment and domain information
>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 382
COG0133396 TrpB Tryptophan synthase beta chain [Amino acid tr 100.0
PRK04346397 tryptophan synthase subunit beta; Validated 100.0
PLN02618410 tryptophan synthase, beta chain 100.0
PRK13028402 tryptophan synthase subunit beta; Provisional 100.0
KOG1395477 consensus Tryptophan synthase beta chain [Amino ac 100.0
PRK13802 695 bifunctional indole-3-glycerol phosphate synthase/ 100.0
PRK13803610 bifunctional phosphoribosylanthranilate isomerase/ 100.0
TIGR00263385 trpB tryptophan synthase, beta subunit. Tryptophan 100.0
COG1171347 IlvA Threonine dehydratase [Amino acid transport a 100.0
cd06446365 Trp-synth_B Tryptophan synthase-beta: Trptophan sy 100.0
PRK08526 403 threonine dehydratase; Provisional 100.0
COG0031300 CysK Cysteine synthase [Amino acid transport and m 100.0
PRK12483 521 threonine dehydratase; Reviewed 100.0
PRK08198 404 threonine dehydratase; Provisional 100.0
PRK06382 406 threonine dehydratase; Provisional 100.0
PRK08639 420 threonine dehydratase; Validated 100.0
PRK07476322 eutB threonine dehydratase; Provisional 100.0
KOG1250 457 consensus Threonine/serine dehydratases [Amino aci 100.0
KOG1251323 consensus Serine racemase [Signal transduction mec 100.0
PLN02970328 serine racemase 100.0
PLN02565322 cysteine synthase 100.0
PLN03013429 cysteine synthase 100.0
PLN02550 591 threonine dehydratase 100.0
TIGR02079 409 THD1 threonine dehydratase. This model represents 100.0
PRK06110322 hypothetical protein; Provisional 100.0
TIGR01124 499 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, 100.0
PRK08638333 threonine dehydratase; Validated 100.0
TIGR01136299 cysKM cysteine synthases. This model discriminates 100.0
PRK11761296 cysM cysteine synthase B; Provisional 100.0
PRK09224 504 threonine dehydratase; Reviewed 100.0
PRK07048321 serine/threonine dehydratase; Validated 100.0
PRK10717330 cysteine synthase A; Provisional 100.0
PLN02356423 phosphateglycerate kinase 100.0
TIGR01139298 cysK cysteine synthase A. This model distinguishes 100.0
PRK06608338 threonine dehydratase; Provisional 100.0
PLN02556368 cysteine synthase/L-3-cyanoalanine synthase 100.0
PLN00011323 cysteine synthase 100.0
TIGR01127 380 ilvA_1Cterm threonine dehydratase, medium form. A 100.0
TIGR02991317 ectoine_eutB ectoine utilization protein EutB. Mem 100.0
PRK08813349 threonine dehydratase; Provisional 100.0
PRK07334 403 threonine dehydratase; Provisional 100.0
TIGR01138290 cysM cysteine synthase B. Alternate name: O-acetyl 100.0
cd06447404 D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph 100.0
cd01561291 CBS_like CBS_like: This subgroup includes Cystathi 100.0
PRK06815317 hypothetical protein; Provisional 100.0
TIGR01415419 trpB_rel pyridoxal-phosphate dependent TrpB-like e 100.0
PRK08246310 threonine dehydratase; Provisional 100.0
PRK02991441 D-serine dehydratase; Provisional 100.0
cd06448316 L-Ser-dehyd Serine dehydratase is a pyridoxal phos 100.0
cd01562304 Thr-dehyd Threonine dehydratase: The first step in 100.0
PRK12391427 tryptophan synthase subunit beta; Reviewed 100.0
TIGR01137 454 cysta_beta cystathionine beta-synthase. Members of 100.0
PRK06381319 threonine synthase; Validated 100.0
TIGR02035431 D_Ser_am_lyase D-serine ammonia-lyase. This family 100.0
PRK08206399 diaminopropionate ammonia-lyase; Provisional 100.0
PRK06352351 threonine synthase; Validated 100.0
PRK08197394 threonine synthase; Validated 100.0
PRK07591421 threonine synthase; Validated 100.0
cd01563324 Thr-synth_1 Threonine synthase is a pyridoxal phos 100.0
TIGR01747376 diampropi_NH3ly diaminopropionate ammonia-lyase fa 100.0
PRK07409353 threonine synthase; Validated 100.0
PRK06721352 threonine synthase; Reviewed 100.0
TIGR03528396 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem 100.0
KOG1252362 consensus Cystathionine beta-synthase and related 100.0
cd00640244 Trp-synth-beta_II Tryptophan synthase beta superfa 100.0
TIGR01275311 ACC_deam_rel pyridoxal phosphate-dependent enzymes 100.0
PRK06450338 threonine synthase; Validated 100.0
PRK06260397 threonine synthase; Validated 100.0
PRK05638 442 threonine synthase; Validated 100.0
TIGR00260328 thrC threonine synthase. Involved in threonine bio 100.0
PRK03910331 D-cysteine desulfhydrase; Validated 100.0
cd06449307 ACCD Aminocyclopropane-1-carboxylate deaminase (AC 100.0
PRK08329347 threonine synthase; Validated 100.0
PF00291306 PALP: Pyridoxal-phosphate dependent enzyme; InterP 100.0
PLN02569 484 threonine synthase 100.0
TIGR01274337 ACC_deam 1-aminocyclopropane-1-carboxylate deamina 100.0
PRK12390337 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
PRK14045329 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
TIGR03844398 cysteate_syn cysteate synthase. Members of this fa 99.97
COG1350432 Predicted alternative tryptophan synthase beta-sub 99.97
KOG1481391 consensus Cysteine synthase [Amino acid transport 99.97
COG0498411 ThrC Threonine synthase [Amino acid transport and 99.94
PRK09225 462 threonine synthase; Validated 99.92
cd01560 460 Thr-synth_2 Threonine synthase catalyzes the final 99.91
COG2515323 Acd 1-aminocyclopropane-1-carboxylate deaminase [A 99.88
COG3048443 DsdA D-serine dehydratase [Amino acid transport an 99.58
PF1482179 Thr_synth_N: Threonine synthase N terminus; PDB: 3 87.96
PF00106167 adh_short: short chain dehydrogenase alcohol dehyd 81.55
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-84  Score=616.75  Aligned_cols=308  Identities=71%  Similarity=1.132  Sum_probs=303.3

Q ss_pred             CCCCCCCCccCCCCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEE
Q 016830           68 QRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIY  147 (382)
Q Consensus        68 ~~~~~~~~~~~~GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~Iy  147 (382)
                      ..||.+|+||.|||+||||+||+.+++|+++|.+.+.||+|++++...+++|+||||||+.+++|++.+      +++||
T Consensus         1 ~~~~~~g~fG~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRptpLy~a~~Lt~~~------gakiy   74 (396)
T COG0133           1 AYPDEKGYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFAERLTEHL------GAKIY   74 (396)
T ss_pred             CCCccCCcccccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhh------CceEE
Confidence            368999999999999999999999999999999999999999999999999999999999999999998      79999


Q ss_pred             EeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCC
Q 016830          148 LKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA  227 (382)
Q Consensus       148 lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GA  227 (382)
                      +||||+||||+||++.++.++++|+++||+++|+|+++|+||+|.|.+|+++|++|+|||...+.+||..|+.+|+.+||
T Consensus        75 LKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA  154 (396)
T COG0133          75 LKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGA  154 (396)
T ss_pred             EehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChh
Q 016830          228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG  307 (382)
Q Consensus       228 eVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~G  307 (382)
                      +|++|..++.+++||+.+++|+|+.+.++++|++++..+|||||.+|++||.+||.|+.+||+++.|..||+||+|||||
T Consensus       155 ~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGG  234 (396)
T COG0133         155 EVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGG  234 (396)
T ss_pred             eEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhHhhhhhhcCCCcEEEEEeCCCCCCCCccccccccCCcceeeCCCcceeeecCCccccccccccCCCCCCC
Q 016830          308 SNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSW  381 (382)
Q Consensus       308 G~~aGi~~~~~~~~~vrViGVep~g~~~~~~~~~~sl~~G~~g~~~g~~~~~l~d~~~~~~~~~si~~~l~~~~  381 (382)
                      +|+.|++..|..+++|++||||+.|.++.+++|+++|+.|++|++||+++|+|||++|||.+.||||||||||+
T Consensus       235 SNAiG~F~~Fi~d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPg  308 (396)
T COG0133         235 SNAIGIFHPFIDDESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPG  308 (396)
T ss_pred             cchhhhcccccCCCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCC
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999997

>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>PLN02618 tryptophan synthase, beta chain Back     alignment and domain information
>PRK13028 tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>TIGR00263 trpB tryptophan synthase, beta subunit Back     alignment and domain information
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12483 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>PRK07476 eutB threonine dehydratase; Provisional Back     alignment and domain information
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>PLN02970 serine racemase Back     alignment and domain information
>PLN02565 cysteine synthase Back     alignment and domain information
>PLN03013 cysteine synthase Back     alignment and domain information
>PLN02550 threonine dehydratase Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>PRK06110 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>PRK08638 threonine dehydratase; Validated Back     alignment and domain information
>TIGR01136 cysKM cysteine synthases Back     alignment and domain information
>PRK11761 cysM cysteine synthase B; Provisional Back     alignment and domain information
>PRK09224 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK07048 serine/threonine dehydratase; Validated Back     alignment and domain information
>PRK10717 cysteine synthase A; Provisional Back     alignment and domain information
>PLN02356 phosphateglycerate kinase Back     alignment and domain information
>TIGR01139 cysK cysteine synthase A Back     alignment and domain information
>PRK06608 threonine dehydratase; Provisional Back     alignment and domain information
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase Back     alignment and domain information
>PLN00011 cysteine synthase Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>TIGR02991 ectoine_eutB ectoine utilization protein EutB Back     alignment and domain information
>PRK08813 threonine dehydratase; Provisional Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR01138 cysM cysteine synthase B Back     alignment and domain information
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia Back     alignment and domain information
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>PRK06815 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>PRK08246 threonine dehydratase; Provisional Back     alignment and domain information
>PRK02991 D-serine dehydratase; Provisional Back     alignment and domain information
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>PRK12391 tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>TIGR01137 cysta_beta cystathionine beta-synthase Back     alignment and domain information
>PRK06381 threonine synthase; Validated Back     alignment and domain information
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase Back     alignment and domain information
>PRK08206 diaminopropionate ammonia-lyase; Provisional Back     alignment and domain information
>PRK06352 threonine synthase; Validated Back     alignment and domain information
>PRK08197 threonine synthase; Validated Back     alignment and domain information
>PRK07591 threonine synthase; Validated Back     alignment and domain information
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family Back     alignment and domain information
>PRK07409 threonine synthase; Validated Back     alignment and domain information
>PRK06721 threonine synthase; Reviewed Back     alignment and domain information
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase Back     alignment and domain information
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>PRK06450 threonine synthase; Validated Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information
>PRK05638 threonine synthase; Validated Back     alignment and domain information
>TIGR00260 thrC threonine synthase Back     alignment and domain information
>PRK03910 D-cysteine desulfhydrase; Validated Back     alignment and domain information
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>PRK08329 threonine synthase; Validated Back     alignment and domain information
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PLN02569 threonine synthase Back     alignment and domain information
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>TIGR03844 cysteate_syn cysteate synthase Back     alignment and domain information
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09225 threonine synthase; Validated Back     alignment and domain information
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis Back     alignment and domain information
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A Back     alignment and domain information
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
1v8z_A388 X-Ray Crystal Structure Of The Tryptophan Synthase 1e-105
1wdw_B385 Structural Basis Of Mutual Activation Of The Trypto 1e-105
1x1q_A418 Crystal Structure Of Tryptophan Synthase Beta Chain 1e-102
2o2e_A422 Mycobacterium Tuberculosis Tryptophan Synthase Beta 1e-101
2dh5_A397 Crystal Structure Of E. Coli Holo-Trpb Length = 397 7e-92
1a50_B396 Crystal Structure Of Wild-Type Tryptophan Synthase 2e-91
1ttp_B397 Tryptophan Synthase (E.C.4.2.1.20) In The Presence 2e-91
1a5a_B397 Cryo-Crystallography Of A True Substrate, Indole-3- 2e-91
1kfe_B394 Crystal Structure Of Alphat183v Mutant Of Tryptopha 3e-91
3pr2_B391 Tryptophan Synthase Indoline Quinonoid Structure Wi 3e-91
1qop_B396 Crystal Structure Of Wild-type Tryptophan Synthase 3e-91
1k8x_B397 Crystal Structure Of Alphat183v Mutant Of Tryptopha 3e-91
1k7x_B396 Crystal Structure Of The Beta-Ser178pro Mutant Of T 4e-91
2tys_B397 Crystal Structures Of Mutant (Betak87t) Tryptophan 8e-91
1ubs_B397 Tryptophan Synthase (E.C.4.2.1.20) With A Mutation 8e-91
2j9y_B397 Tryptophan Synthase Q114n Mutant In Complex With Co 1e-90
1qoq_B396 Crystal Structure Of Wild-type Tryptophan Synthase 2e-90
1fuy_B396 Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTA 3e-90
2j9z_B397 Tryptophan Synthase T110 Mutant Complex Length = 39 5e-90
>pdb|1V8Z|A Chain A, X-Ray Crystal Structure Of The Tryptophan Synthase B2 Subunit From Hyperthermophile, Pyrococcus Furiosus Length = 388 Back     alignment and structure 
Iteration: 1

 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/296 (61%), Positives = 227/296 (76%), Gaps = 5/296 (1%)
Query: 84  VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
           VPETL+  L ELE A  +  DD +F  +L+  L+ + GR TPLY+A+RLTE       GG
Sbjct: 11  VPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKI-----GG 65
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
             IYLKREDL H GAHK NNA+GQALLAK +GKTR+IAETGAGQHGVATA   A  G++ 
Sbjct: 66  AKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKV 125
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
            +YMGA+D+ERQ +NVFRM+LLGA V  V+SG+ TLKDA +EA+RDWV   E THY++GS
Sbjct: 126 DIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGS 185
Query: 264 VAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDV 323
           V GPHPYP +VRDF +VIG+E + Q LE  G  PDV++ACVGGGSNAMG+F+ FVNDK V
Sbjct: 186 VVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKV 245
Query: 324 RLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPW 379
           +L+GVEA G GL+SGKH+A+L+ G+VGV HG LSY LQ+E+GQI   HSI+ GL +
Sbjct: 246 KLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDY 301
>pdb|1WDW|B Chain B, Structural Basis Of Mutual Activation Of The Tryptophan Synthase A2b2 Complex From A Hyperthermophile, Pyrococcus Furiosus Length = 385 Back     alignment and structure
>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From Thermus Thermophilus Hb8 Length = 418 Back     alignment and structure
>pdb|2O2E|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta Subunit Dimer (Apoform) Length = 422 Back     alignment and structure
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb Length = 397 Back     alignment and structure
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase Complexed With 5- Fluoroindole Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of Cesium, Room Temperature Length = 397 Back     alignment and structure
>pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate, Indole-3-Glycerol Phosphate, Bound To A Mutant (Alphad60n) Tryptophan Synthase Alpha2beta2 Complex Reveals The Correct Orientation Of Active Site Alpha Glu 49 Length = 397 Back     alignment and structure
>pdb|1KFE|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium With L-ser Bound To The Beta Site Length = 394 Back     alignment and structure
>pdb|3PR2|B Chain B, Tryptophan Synthase Indoline Quinonoid Structure With F9 Inhibitor In Alpha Site Length = 391 Back     alignment and structure
>pdb|1QOP|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase Complexed With Indole Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|1K8X|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium Length = 397 Back     alignment and structure
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of Tryptophan Synthase Length = 396 Back     alignment and structure
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan Synthase Alpha2 Beta2 Complex With Ligands Bound To The Active Sites Of The Alpha And Beta Subunits Reveal Ligand-Induced Conformational Changes Length = 397 Back     alignment and structure
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys 87->thr In The B Subunit And In The Presence Of Ligand L-Serine Length = 397 Back     alignment and structure
>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound Ii Length = 397 Back     alignment and structure
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase Complexed With Indole Glycerol Phosphate Length = 396 Back     alignment and structure
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF TRYPTOPHAN Synthase Complexed With 5-Fluoro-Indole-Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex Length = 397 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
1x1q_A418 Tryptophan synthase beta chain; structural genomic 0.0
1qop_B396 Tryptophan synthase beta chain; lyase, carbon-oxyg 0.0
2o2e_A422 Tryptophan synthase beta chain; amino-acid biosynt 0.0
1v8z_A388 Tryptophan synthase beta chain 1; beta+alpha, rike 0.0
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 1e-53
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 5e-31
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 3e-15
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 4e-15
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 1e-14
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 1e-14
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 7e-14
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 7e-14
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 2e-13
1e5x_A 486 Threonine synthase; threonine biosynthesis, PLP en 2e-12
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 2e-11
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 1e-10
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 1e-10
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 2e-09
2gn0_A342 Threonine dehydratase catabolic; TDCB, biodegradat 1e-08
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 7e-08
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 8e-08
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 3e-07
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 3e-04
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Length = 418 Back     alignment and structure
 Score =  646 bits (1670), Expect = 0.0
 Identities = 198/325 (60%), Positives = 244/325 (75%), Gaps = 7/325 (2%)

Query: 55  PMEAKKESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSG 114
               +       +  PD  GRFG +GG++VPETL+ AL ELE+A  +   D  F EEL  
Sbjct: 9   AFRERSMLTLPDFPLPDARGRFGPYGGRYVPETLIPALEELEAAYREAKKDPAFLEELDH 68

Query: 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRL 174
            LR + GR TPLY A+RL+E++     GG  ++LKREDL HTGAHKINN +GQALLA+R+
Sbjct: 69  YLRQFAGRPTPLYHAKRLSEYW-----GGAQVFLKREDLLHTGAHKINNTLGQALLARRM 123

Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234
           GK R+IAETGAGQHGV+ ATV A FGL+C+VYMG +D+ RQALNVFRM+LLGAEVR V +
Sbjct: 124 GKRRVIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAA 183

Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWG 294
           G+ TLKDAT+EAIRDW+TNV TT YILGSV GPHPYPMMVRDF +VIG+E +RQ+LE +G
Sbjct: 184 GSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEVKRQSLELFG 243

Query: 295 GKPDVLIACVGGGSNAMGLFHEF--VNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352
             PD LIA VGGGSNA+GLF  F  + +   +LIGVEAAG GL +G+HAA++  G+ GVL
Sbjct: 244 RLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGVL 303

Query: 353 HGALSYLLQNEDGQIIEPHSISAGL 377
           HG+  YLL + DGQI   HS+SAGL
Sbjct: 304 HGSYMYLLYDHDGQITPAHSVSAGL 328
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Length = 396 Back     alignment and structure
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Length = 422 Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Length = 388 Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341 Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372 Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352 Back     alignment and structure
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342 Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398 Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318 Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486 Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325 Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514 Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366 Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311 Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323 Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346 Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442 Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query382
2o2e_A422 Tryptophan synthase beta chain; amino-acid biosynt 100.0
1qop_B396 Tryptophan synthase beta chain; lyase, carbon-oxyg 100.0
1x1q_A418 Tryptophan synthase beta chain; structural genomic 100.0
1v8z_A388 Tryptophan synthase beta chain 1; beta+alpha, rike 100.0
3vc3_A344 Beta-cyanoalnine synthase; beta-cyanoalanine synth 100.0
1wkv_A389 Cysteine synthase; homodimer, open alpha/beta fold 100.0
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 100.0
2gn0_A342 Threonine dehydratase catabolic; TDCB, biodegradat 100.0
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 100.0
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 100.0
3tbh_A334 O-acetyl serine sulfhydrylase; cysteine synthase, 100.0
4aec_A430 Cysteine synthase, mitochondrial; lyase, cysteine 100.0
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 100.0
3dwg_A325 Cysteine synthase B; sulfur carrier protein comple 100.0
2v03_A303 Cysteine synthase B; pyridoxal phosphate, cysteine 100.0
2egu_A308 Cysteine synthase; O-acetylserine sulfhydrase, str 100.0
4h27_A364 L-serine dehydratase/L-threonine deaminase; PLP de 100.0
2q3b_A313 Cysteine synthase A; pyridoxal-5'-phosphate, sulph 100.0
1ve1_A304 O-acetylserine sulfhydrylase; PLP, transferase, ri 100.0
1z7w_A322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 100.0
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 100.0
2pqm_A343 Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 100.0
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 100.0
1y7l_A316 O-acetylserine sulfhydrylase, O-acetylserine (thio 100.0
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 100.0
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 100.0
1jbq_A435 B, cystathionine beta-synthase, serine sulfhydrase 100.0
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 100.0
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 100.0
1o58_A303 O-acetylserine sulfhydrylase; TM0665, structural g 100.0
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 100.0
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 100.0
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 100.0
1vb3_A 428 Threonine synthase; PLP-dependent enzyme, lyase; H 100.0
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 100.0
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 100.0
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 100.0
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 100.0
1e5x_A 486 Threonine synthase; threonine biosynthesis, PLP en 100.0
4f4f_A 468 Threonine synthase; structural genomics, niaid, na 99.97
3v7n_A 487 Threonine synthase; ssgcid, structural genomics, s 99.97
1kl7_A 514 Threonine synthase; threonine synthesis, pyridoxal 99.96
3pi7_A349 NADH oxidoreductase; groes-like fold, NAD(P)-bindi 87.2
1vp8_A201 Hypothetical protein AF0103; putative pyruvate kin 83.05
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Back     alignment and structure
Probab=100.00  E-value=8.3e-64  Score=507.91  Aligned_cols=309  Identities=59%  Similarity=1.002  Sum_probs=225.8

Q ss_pred             CCCCCCCCccC---CCCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCC
Q 016830           68 QRPDVFGRFGR---FGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGP  144 (382)
Q Consensus        68 ~~~~~~~~~~~---~GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~  144 (382)
                      +.||++|+||.   |||+||||.+++++++|++||++++.+++|+++++..+.+++|+||||+++++|++.+     ++.
T Consensus        23 ~~~~~~~~~~~~~~~gg~~~pe~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~g~~TPL~~~~~Ls~~~-----gg~   97 (422)
T 2o2e_A           23 HDPDSGGHFGGPSGWGGRYVPEALMAVIEEVTAAYQKERVSQDFLDDLDRLQANYAGRPSPLYEATRLSQHA-----GSA   97 (422)
T ss_dssp             ------------------CCCGGGHHHHHHHHHHHHHHHTSTHHHHHHHHHTTTTSSCSCCEEECGGGGGGT-----TTC
T ss_pred             cCCCcCCCCCCCCCcCCccCCHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCeEEChhhHhhc-----CCC
Confidence            46899999999   9999999999999999999999999999999999999999999999999999999987     368


Q ss_pred             eEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHH
Q 016830          145 HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL  224 (382)
Q Consensus       145 ~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~  224 (382)
                      +||+|+|++|||||||+|+++++++.+++.+++++|+++|+||||+|+|++|+++|++|+||||+.+.++++.|+.+|+.
T Consensus        98 ~i~lK~E~lnptGSfK~R~a~~~~~~a~~~g~~~vI~~~ssGNhG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~  177 (422)
T 2o2e_A           98 RIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRL  177 (422)
T ss_dssp             EEEEECGGGCCSSTTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHHHHHHH
T ss_pred             eEEEEEcCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEecCccHHHHHHHHHHHHcCCcEEEEeCCCcchhhHHHHHHHHH
Confidence            99999999999999999999999999988898888888999999999999999999999999998765666789999999


Q ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcC
Q 016830          225 LGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACV  304 (382)
Q Consensus       225 ~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpv  304 (382)
                      +||+|+.++.+..+++++.+++.+.+.++..+.+|+++++.|+|||+.++.++|.++|.|+.+|+.++.+..||+||+|+
T Consensus       178 ~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpv  257 (422)
T 2o2e_A          178 LGAEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACV  257 (422)
T ss_dssp             TTCEEEEECSTTSCHHHHHHHHHHHHHHHTTTEEECCCCSSSCCCCHHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEcc
Confidence            99999999865568999998887877776556788889999999998777789999999999999888776799999999


Q ss_pred             ChhhHHhHhhhhhhcCCCcEEEEEeCCCCCCCCccccccccCCcceeeCCCcceeeecCCccccccccccCCCCCCC
Q 016830          305 GGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSW  381 (382)
Q Consensus       305 G~GG~~aGi~~~~~~~~~vrViGVep~g~~~~~~~~~~sl~~G~~g~~~g~~~~~l~d~~~~~~~~~si~~~l~~~~  381 (382)
                      |+||+++|++.+++.+|.+|||||||++++.+.+++..++..|.++++|+..++.+||++||+.+.|+||.|||||.
T Consensus       258 G~GG~~~Gi~~~~~~~p~v~vigVe~~g~~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~  334 (422)
T 2o2e_A          258 GGGSNAIGIFHAFLDDPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFSYLLQDEDGQTIESHSISAGLDYPG  334 (422)
T ss_dssp             GGHHHHHTTSGGGTTCTTCEEEEEEECC-------------------------------------------------
T ss_pred             CCchhHHHHHHHHhcCCCCeEEEEecCCCcccchhHHHHHHcCCceeccccchhhcccccccccCCceeecccCCCC
Confidence            99999999988887789999999999998776677889999999999999999999999999999999999999974
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Back     alignment and structure
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Back     alignment and structure
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* Back     alignment and structure
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Back     alignment and structure
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Back     alignment and structure
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* Back     alignment and structure
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Back     alignment and structure
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Back     alignment and structure
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* Back     alignment and structure
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Back     alignment and structure
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Back     alignment and structure
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Back     alignment and structure
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Back     alignment and structure
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Back     alignment and structure
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Back     alignment and structure
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Back     alignment and structure
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} Back     alignment and structure
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} Back     alignment and structure
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Back     alignment and structure
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Back     alignment and structure
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 382
d1v8za1386 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun 3e-96
d1qopb_390 c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S 2e-94
d1tyza_338 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 1e-30
d1o58a_293 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 1e-27
d1tdja1331 c.79.1.1 (A:5-335) Threonine deaminase {Escherichi 1e-26
d1f2da_341 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 7e-26
d1jbqa_355 c.79.1.1 (A:) Cystathionine beta-synthase {Human ( 1e-23
d1v71a1318 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S 1e-20
d1ve1a1302 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C 7e-20
d2bhsa1292 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C 2e-16
d1j0aa_325 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 7e-16
d1ve5a1310 c.79.1.1 (A:2-311) Threonine deaminase {Thermus th 2e-15
d1fcja_302 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 3e-15
d1wkva1382 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C 3e-15
d1e5xa_477 c.79.1.1 (A:) Threonine synthase {Mouse-ear cress 5e-15
d1p5ja_319 c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa 1e-14
d1z7wa1320 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C 2e-13
d1y7la1310 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C 8e-13
d1v7ca_351 c.79.1.1 (A:) Threonine synthase {Thermus thermoph 6e-12
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  290 bits (742), Expect = 3e-96
 Identities = 185/297 (62%), Positives = 229/297 (77%), Gaps = 5/297 (1%)

Query: 76  FGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEH 135
           FG FGG++VPETL+  L ELE A  +  DD +F  +L+  L+ + GR TPLY+A+RLTE 
Sbjct: 3   FGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEK 62

Query: 136 YRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATV 195
                 GG  IYLKREDL H GAHK NNA+GQALLAK +GKTR+IAETGAGQHGVATA  
Sbjct: 63  I-----GGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMA 117

Query: 196 CARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVE 255
            A  G++  +YMGA+D+ERQ +NVFRM+LLGA V  V+SG+ TLKDA +EA+RDWV   E
Sbjct: 118 GALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFE 177

Query: 256 TTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFH 315
            THY++GSV GPHPYP +VRDF +VIG+E + Q LE  G  PDV++ACVGGGSNAMG+F+
Sbjct: 178 YTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFY 237

Query: 316 EFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHS 372
            FVNDK V+L+GVEA G GL+SGKH+A+L+ G+VGV HG LSY LQ+E+GQI   HS
Sbjct: 238 PFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHS 294
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355 Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302 Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292 Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310 Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477 Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319 Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320 Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query382
d1qopb_390 Tryptophan synthase, beta-subunit {Salmonella typh 100.0
d1v8za1386 Tryptophan synthase, beta-subunit {Archaeon Pyroco 100.0
d1z7wa1320 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d2bhsa1292 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1ve1a1302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1o58a_293 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1jbqa_355 Cystathionine beta-synthase {Human (Homo sapiens) 100.0
d1v71a1318 Hypothetical protein C320.14 (SPCC320.14, SPCC330. 100.0
d1p5ja_319 L-serine dehydratase {Human (Homo sapiens) [TaxId: 100.0
d1ve5a1310 Threonine deaminase {Thermus thermophilus [TaxId: 100.0
d1tdja1331 Threonine deaminase {Escherichia coli [TaxId: 562] 100.0
d1y7la1310 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1wkva1382 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1fcja_302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1v7ca_351 Threonine synthase {Thermus thermophilus [TaxId: 2 99.97
d1e5xa_ 477 Threonine synthase {Mouse-ear cress (Arabidopsis t 99.97
d1j0aa_325 1-aminocyclopropane-1-carboxylate deaminase {Archa 99.96
d1tyza_338 1-aminocyclopropane-1-carboxylate deaminase {Pseud 99.96
d1f2da_341 1-aminocyclopropane-1-carboxylate deaminase {Yeast 99.95
d1vb3a1 428 Threonine synthase {Escherichia coli [TaxId: 562]} 99.83
d1kl7a_ 511 Threonine synthase {Baker's yeast (Saccharomyces c 99.46
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 93.7
d1pl8a2171 Ketose reductase (sorbitol dehydrogenase) {Human ( 92.22
d1llua2166 Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax 91.46
d1v3va2182 Leukotriene b4 12-hydroxydehydrogenase/prostagland 90.37
d1qora2179 Quinone oxidoreductase {Escherichia coli [TaxId: 5 90.05
d1vj0a2182 Hypothetical protein TM0436 {Thermotoga maritima [ 89.11
d1piwa2168 Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas 87.95
d1rjwa2168 Alcohol dehydrogenase {Bacillus stearothermophilus 87.52
d1vp8a_190 Hypothetical protein AF0103 {Archaeoglobus fulgidu 87.25
d1pqwa_183 Putative enoyl reductase domain of polyketide synt 87.18
d1kola2195 Formaldehyde dehydrogenase {Pseudomonas putida [Ta 87.06
d1yb5a2174 Quinone oxidoreductase {Human (Homo sapiens) [TaxI 86.13
d1iz0a2171 Quinone oxidoreductase {Thermus thermophilus [TaxI 86.1
d1f8fa2174 Benzyl alcohol dehydrogenase {Acinetobacter calcoa 85.95
d1e3ia2174 Alcohol dehydrogenase {Mouse (Mus musculus), class 85.52
d1jvba2170 Alcohol dehydrogenase {Archaeon Sulfolobus solfata 85.41
d3etja278 N5-carboxyaminoimidazole ribonucleotide synthetase 85.05
d1geea_261 Glucose dehydrogenase {Bacillus megaterium [TaxId: 84.05
d2fzwa2176 Alcohol dehydrogenase {Human (Homo sapiens), diffe 83.49
d1edoa_244 beta-keto acyl carrier protein reductase {Oil seed 82.92
d1x1ta1260 D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas 82.72
d1ja9a_259 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl 82.63
d1o8ca277 Hypothetical protein YhdH {Escherichia coli [TaxId 82.57
d1zema1260 Xylitol dehydrogenase {Gluconobacter oxydans [TaxI 81.69
d1jqba2174 Bacterial secondary alcohol dehydrogenase {Clostri 81.58
d1gega_255 meso-2,3-butanediol dehydrogenase {Klebsiella pneu 81.54
d1g0oa_272 1,3,8-trihydroxynaphtalene reductase (THNR, naphto 81.25
d1uufa2168 Hypothetical protein YahK {Escherichia coli [TaxId 80.7
d2jhfa2176 Alcohol dehydrogenase {Horse (Equus caballus) [Tax 80.41
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=3.7e-65  Score=510.60  Aligned_cols=304  Identities=55%  Similarity=0.923  Sum_probs=291.2

Q ss_pred             CCCCccCCCCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeec
Q 016830           72 VFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKRE  151 (382)
Q Consensus        72 ~~~~~~~~GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E  151 (382)
                      .|||||.|||+||||+||+.|+||+++|.+++.|++|++|++..+++|+||||||+++++|++.+      +++||+|+|
T Consensus         4 ~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~~grpTPL~~~~~Ls~~l------g~~IylK~E   77 (390)
T d1qopb_           4 LNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGT------RTTLYLKRE   77 (390)
T ss_dssp             SCCEETTEEEEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTS------SEEEEEEEG
T ss_pred             CCCcccCcCCEeCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCchhhEhHhhhhhh------CCEEEEEEe
Confidence            48999999999999999999999999999999999999999999999999999999999999987      789999999


Q ss_pred             CCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830          152 DLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA  231 (382)
Q Consensus       152 ~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~  231 (382)
                      ++|||||||+|+++++++.|+++|++++|+++|+||||+++|++|+++|++|+||||+.++.++..|+.+|+.|||+|+.
T Consensus        78 ~lnptGS~K~R~a~~~i~~A~~~G~~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~  157 (390)
T d1qopb_          78 DLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIP  157 (390)
T ss_dssp             GGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEE
T ss_pred             cCCcccccchhHHHHHHHHHhhcCCceeeeehhHHHHHHHHHHHHHhccCceEEeecccccccchHHHHHHHhcCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999998877778899999999999999


Q ss_pred             EcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHh
Q 016830          232 VHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAM  311 (382)
Q Consensus       232 v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~a  311 (382)
                      ++.+..+++++..++.+++....+..+|.+++..+++||+.+++++|.++|.|+.+|+.++.+..||+||+|+|+|++++
T Consensus       158 v~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~  237 (390)
T d1qopb_         158 VHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAI  237 (390)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHH
T ss_pred             ecCCchhhhHhHHHHHHHHhhhhhhhhhccccccccccccccccchhhhhcchhHHHHHHHcCCccceEEecccccchhh
Confidence            99887889999999999998888888898899999999999999999999999999998888889999999999999999


Q ss_pred             HhhhhhhcCCCcEEEEEeCCCCCCCCccccccccCCcceeeCCCcceeeecCCccccccccccCCCCCCC
Q 016830          312 GLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSW  381 (382)
Q Consensus       312 Gi~~~~~~~~~vrViGVep~g~~~~~~~~~~sl~~G~~g~~~g~~~~~l~d~~~~~~~~~si~~~l~~~~  381 (382)
                      |++.+|+..+.+++++++|.+.+.....+.+++..|.+++.|+..++.++|++|++.+.|||++||+||.
T Consensus       238 G~~~~f~~~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~~~g~~~~~~s~a~gl~~~~  307 (390)
T d1qopb_         238 GMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPS  307 (390)
T ss_dssp             HHHGGGTTCTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSS
T ss_pred             heecccccccceeEeccccccccccccccccccccCcccccccccccccccCCCcccccccccccccccc
Confidence            9999999888999999999999888888899999999999999999999999999999999999999985
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Back     information, alignment and structure
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Back     information, alignment and structure
>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Back     information, alignment and structure
>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Back     information, alignment and structure
>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Back     information, alignment and structure
>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Back     information, alignment and structure
>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Back     information, alignment and structure
>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Back     information, alignment and structure
>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Back     information, alignment and structure