Citrus Sinensis ID: 016889

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
MDFDSFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLDPWEGGSRTRNPFTWIKEAMSSSEQDVINMSGLDTAVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRADALMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRHFFCFYPRLRGFLQ
ccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccccccccccccccccHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccHHHHHHHHHHHHccccEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHccccccccEEEcccccccEEEccccccHHHHHHHHHHHHHHHHHHHcc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHcccccEEEEEcccccccEEcccccccHHHHHHHHHHHHHHHHHHHHc
MDFDSFLTSLGTSFIIFVVLMCLFAWlsskpgntvvyypnrilkgldpweggsrtrnpFTWIKEAMSSSEQDVINMSGLDTAVYFVFMSTVLGIFALSGIillpallpvaatddsiqaagknttsigtfndldklsmgnitaKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRadalmspevrpqQFAVLVRdlpdlpkgqsrkeQVDSYFKaiypdtfyrSMVVTNNKEANKIYEELEGYKKKLARAEAVYAesksagkpegtrptiktgFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVdtwtvsdapesreLIWNNLNIKFFQRQIRHFFCFYPRLRGFLQ
MDFDSFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRIlkgldpweggsRTRNPFTWIKEAMSSSEQDVINMSGLDTAVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRADALMSPEVRPQQFAVLVRdlpdlpkgqsrkeqvdSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYaesksagkpegtrptiktgflgllGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRHFFCFYPRLRGFLQ
MDFDSFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLDPWEGGSRTRNPFTWIKEAMSSSEQDVINMSGLDTAVYFVFMSTVLGIFALSGIIllpallpvaaTDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRADALMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAieyynekikeiiPKLEAEQKITLKEKQLGAALVFFTSRvaaasaaqslhaqlvDTWTVSDAPESRELIWNNLNIKFFQRQIRHFFCFYPRLRGFLQ
*****FLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLDPWEGGSRTRNPFTWIKEA*****QDVINMSGLDTAVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRADALMSPEVRPQQFAVLVRDL************VDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARA******************TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRHFFCFYPRLRGF**
MDFDSFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPN******************FTWIKEAMSSSEQDVINMSGLDTAVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRADALMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRHFFCFYPRLRGFLQ
MDFDSFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLDPWEGGSRTRNPFTWIKEAMSSSEQDVINMSGLDTAVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRADALMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAE**************TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRHFFCFYPRLRGFLQ
MDFDSFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLDPWEGGSRTRNPFTWIKEAMSSSEQDVINMSGLDTAVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAA***TTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRADALMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKS*****GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRHFFCFYPRLRGFLQ
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDFDSFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLDPWEGGSRTRNPFTWIKEAMSSSEQDVINMSGLDTAVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRADALMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKExxxxxxxxxxxxxxxxxxxxxxxxxxxxGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRHFFCFYPRLRGFLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query381 2.2.26 [Sep-21-2011]
O43022 865 Uncharacterized protein C yes no 0.868 0.382 0.246 1e-14
Q09766 871 Uncharacterized membrane no no 0.874 0.382 0.227 1e-08
Q09809 793 Uncharacterized membrane no no 0.839 0.403 0.211 2e-08
Q91YT8 804 Transmembrane protein 63A yes no 0.713 0.338 0.226 6e-08
Q9P1W3 806 Transmembrane protein 63C yes no 0.742 0.351 0.225 3e-07
O94886 807 Transmembrane protein 63A no no 0.719 0.339 0.212 5e-06
Q5R826 807 Transmembrane protein 63A no no 0.719 0.339 0.206 3e-05
Q8CBX0 802 Transmembrane protein 63C no no 0.713 0.339 0.232 0.0001
Q03516 953 Uncharacterized protein R yes no 0.742 0.296 0.212 0.0002
Q5T3F8 832 Transmembrane protein 63B no no 0.690 0.316 0.219 0.0005
>sp|O43022|YGV8_SCHPO Uncharacterized protein C354.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC354.08c PE=4 SV=1 Back     alignment and function desciption
 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 161/365 (44%), Gaps = 34/365 (9%)

Query: 5   SFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLDPWEGGSRTRNPFTWIKE 64
           S L SLG S ++ V+L+C+F  L +K         N   + + P +     ++ + WI+ 
Sbjct: 31  SILVSLGFSSLLSVILLCIFTLLRTK--------FNTYDRCIPPMK-----KSLWGWIEP 77

Query: 65  AMSSSEQDVINMSGLDTAVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTT 124
             S   +D +   G D  +  +F      +F +   I    L+P+     +I A  K   
Sbjct: 78  LWSIKVEDCLYNMGADAVISLLFSRFCRDVFLILAAICCTILIPI-----NIVATNKTLA 132

Query: 125 SIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRADALMSPE 184
           +  + N   KLS+ N+T   +  WA +V  Y  + +  FLL R Y+ V  +R     SP 
Sbjct: 133 NSDSQNAYAKLSIQNVTGNWT--WAHVVICYVFNVLVLFLLARYYQIVMRIRQRYYRSPT 190

Query: 185 VRPQQF--AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELE 242
            +      ++L+ D+P   +  +    + S  K+   +      +    K   KI   L+
Sbjct: 191 YQQSMSSRSLLIMDIPTTMRSNNGLSILASRLKS--SEAPMHVHICHAIKNLPKI---LK 245

Query: 243 GYKKKLARAEAVYAE-SKSAGKPEGTRPT--IKTGFLGLLGKRVDAIEYYNEKIKEIIPK 299
            +   +   EAV A+  K+  K    RP   +K G L    ++VDAI+YY+ KI+    +
Sbjct: 246 KHDNAVRSLEAVLAKFFKNPKKLPDDRPVRRVKQGLLT--SEKVDAIDYYSAKIENYGLR 303

Query: 300 LEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNI 359
           ++A ++   + +      + + S   A   A+  H   V   +VS APE  + +W+NL++
Sbjct: 304 VDAARESLYENEFEHYGFITYKSSYIAHDTAR--HNSRVAGASVSMAPEPSDFLWDNLSL 361

Query: 360 KFFQR 364
            +  R
Sbjct: 362 AWSTR 366

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q09766|YA7D_SCHPO Uncharacterized membrane protein C24H6.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.13 PE=1 SV=1 Back     alignment and function description
>sp|Q09809|YAB9_SCHPO Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=3 SV=2 Back     alignment and function description
>sp|Q91YT8|TM63A_MOUSE Transmembrane protein 63A OS=Mus musculus GN=Tmem63a PE=2 SV=1 Back     alignment and function description
>sp|Q9P1W3|TM63C_HUMAN Transmembrane protein 63C OS=Homo sapiens GN=TMEM63C PE=2 SV=1 Back     alignment and function description
>sp|O94886|TM63A_HUMAN Transmembrane protein 63A OS=Homo sapiens GN=TMEM63A PE=2 SV=3 Back     alignment and function description
>sp|Q5R826|TM63A_PONAB Transmembrane protein 63A OS=Pongo abelii GN=TMEM63A PE=2 SV=1 Back     alignment and function description
>sp|Q8CBX0|TM63C_MOUSE Transmembrane protein 63C OS=Mus musculus GN=Tmem63c PE=2 SV=1 Back     alignment and function description
>sp|Q03516|RSN1_YEAST Uncharacterized protein RSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSN1 PE=1 SV=1 Back     alignment and function description
>sp|Q5T3F8|TM63B_HUMAN Transmembrane protein 63B OS=Homo sapiens GN=TMEM63B PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
225443962 724 PREDICTED: uncharacterized membrane prot 0.976 0.513 0.717 1e-159
147827322 676 hypothetical protein VITISV_037471 [Viti 0.976 0.550 0.717 1e-159
224061057 724 predicted protein [Populus trichocarpa] 0.971 0.511 0.723 1e-153
357447203 722 Early-responsive to dehydration [Medicag 0.971 0.512 0.697 1e-152
449433557 725 PREDICTED: uncharacterized membrane prot 0.973 0.511 0.672 1e-152
449490576 725 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.973 0.511 0.670 1e-151
356555504 723 PREDICTED: uncharacterized membrane prot 0.971 0.511 0.697 1e-149
356549126 724 PREDICTED: uncharacterized membrane prot 0.971 0.511 0.687 1e-145
255580455 641 conserved hypothetical protein [Ricinus 0.826 0.491 0.753 1e-142
18397470 724 Early-responsive to dehydration stress p 0.960 0.505 0.656 1e-137
>gi|225443962|ref|XP_002280109.1| PREDICTED: uncharacterized membrane protein C24H6.13-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/372 (71%), Positives = 321/372 (86%)

Query: 1   MDFDSFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLDPWEGGSRTRNPFT 60
           MDF SFLTSLGTSF+IFVVLM LFAWLS KPGN+V+YYPNRILKG+DPWEGG RTRNPF 
Sbjct: 1   MDFSSFLTSLGTSFLIFVVLMLLFAWLSRKPGNSVIYYPNRILKGMDPWEGGKRTRNPFA 60

Query: 61  WIKEAMSSSEQDVINMSGLDTAVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAG 120
           WI+EA++SSE DVI+MSG+D+AVY VF+ST LGI  LSGI+LL  LLPVAATD++++ + 
Sbjct: 61  WIREAITSSEDDVISMSGVDSAVYLVFLSTALGILILSGIVLLLVLLPVAATDNNLKLSA 120

Query: 121 KNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRADAL 180
            ++TS GTFNDLDKLSMGN+ A S RLWAFL+ATYWVSFVTY+L W+ YKHVS LRA AL
Sbjct: 121 NSSTSNGTFNDLDKLSMGNVKANSERLWAFLIATYWVSFVTYYLSWKAYKHVSGLRAAAL 180

Query: 181 MSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEE 240
            SP+V+ +QFAVLVRD+P +P+G++RKEQVDSYFK IYPDTFYRSMVVT+ K+  KI+ +
Sbjct: 181 KSPDVKVEQFAVLVRDIPAVPEGKTRKEQVDSYFKGIYPDTFYRSMVVTDIKQVTKIWVK 240

Query: 241 LEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKL 300
           LEGYKKKLARAEA+Y +SK+ G PEG RP  KTGFLGL+GK+VD+IEYYNEKI E+IPKL
Sbjct: 241 LEGYKKKLARAEAIYEQSKTTGSPEGKRPMNKTGFLGLVGKKVDSIEYYNEKINELIPKL 300

Query: 301 EAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIK 360
           EAEQK+TL+EKQ  +ALVFFTSRV AA+A QSLH Q+VD+WTV DAPE R++IW NL IK
Sbjct: 301 EAEQKVTLREKQQASALVFFTSRVTAAAAGQSLHDQMVDSWTVIDAPEPRQIIWKNLLIK 360

Query: 361 FFQRQIRHFFCF 372
           F+ R+IR +  +
Sbjct: 361 FYSREIRQYVVY 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147827322|emb|CAN64310.1| hypothetical protein VITISV_037471 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061057|ref|XP_002300337.1| predicted protein [Populus trichocarpa] gi|222847595|gb|EEE85142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357447203|ref|XP_003593877.1| Early-responsive to dehydration [Medicago truncatula] gi|355482925|gb|AES64128.1| Early-responsive to dehydration [Medicago truncatula] Back     alignment and taxonomy information
>gi|449433557|ref|XP_004134564.1| PREDICTED: uncharacterized membrane protein C2G11.09-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449490576|ref|XP_004158645.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized membrane protein C2G11.09-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356555504|ref|XP_003546071.1| PREDICTED: uncharacterized membrane protein C24H6.13-like [Glycine max] Back     alignment and taxonomy information
>gi|356549126|ref|XP_003542948.1| PREDICTED: uncharacterized membrane protein C24H6.13-like [Glycine max] Back     alignment and taxonomy information
>gi|255580455|ref|XP_002531053.1| conserved hypothetical protein [Ricinus communis] gi|223529348|gb|EEF31314.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|18397470|ref|NP_564354.1| Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] gi|12322128|gb|AAG51102.1|AC025295_10 unknown protein [Arabidopsis thaliana] gi|14334838|gb|AAK59597.1| unknown protein [Arabidopsis thaliana] gi|17104683|gb|AAL34230.1| unknown protein [Arabidopsis thaliana] gi|332193088|gb|AEE31209.1| Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
TAIR|locus:2204227 724 ERD4 "early-responsive to dehy 0.958 0.504 0.585 1e-114
TAIR|locus:2089850 756 AT3G21620 "AT3G21620" [Arabido 0.892 0.449 0.328 3.9e-35
TAIR|locus:2027119 769 AT1G62320 "AT1G62320" [Arabido 0.889 0.440 0.304 4.7e-33
TAIR|locus:2008860 771 AT1G11960 "AT1G11960" [Arabido 0.889 0.439 0.308 4.7e-33
TAIR|locus:2031735 806 AT1G32090 "AT1G32090" [Arabido 0.923 0.436 0.305 1.4e-32
TAIR|locus:2120673 771 AT4G22120 [Arabidopsis thalian 0.918 0.453 0.286 3.2e-31
TAIR|locus:2134882 772 AT4G04340 [Arabidopsis thalian 0.897 0.443 0.292 8.8e-31
TAIR|locus:2140210 785 AT4G02900 [Arabidopsis thalian 0.871 0.422 0.295 5.2e-30
TAIR|locus:2130130 761 AT4G15430 "AT4G15430" [Arabido 0.892 0.446 0.286 4.7e-26
TAIR|locus:2201876 762 AT1G10090 "AT1G10090" [Arabido 0.905 0.452 0.240 3.3e-21
TAIR|locus:2204227 ERD4 "early-responsive to dehydration 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
 Identities = 220/376 (58%), Positives = 271/376 (72%)

Query:     1 MDFDSFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLDPWEGGSRTRNPFT 60
             M+F SFL SLGTSF+IFV+LM LF WLS K GN  +YYPNRILKGL+PWEG S TRNPF 
Sbjct:     1 MEFGSFLVSLGTSFVIFVILMLLFTWLSRKSGNAPIYYPNRILKGLEPWEGTSLTRNPFA 60

Query:    61 WIKEAMSSSEQDVINMSGLDTAVYFVFMSTVLGIFALSGIIXXXXXXXXXXTDDSIQAAG 120
             W++EA++SSEQDV+N+SG+DTAV+FVF+STVLGIFA S ++          TD++I+   
Sbjct:    61 WMREALTSSEQDVVNLSGVDTAVHFVFLSTVLGIFACSSLLLLPTLLPLAATDNNIKNT- 119

Query:   121 KN---TTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYFLLWRGYKHVSELRA 177
             KN   TTS GTF+ LD LSM NIT KSSRLWAFL A YW+S VTYF LW+ YKHVS LRA
Sbjct:   120 KNATDTTSKGTFSQLDNLSMANITKKSSRLWAFLGAVYWISLVTYFFLWKAYKHVSSLRA 179

Query:   178 DALMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKI 237
              ALMS +V+P+QFA+LVRD+P  P GQ++KE +DSYF+ IYP+TFYRS+V T N + NKI
Sbjct:   180 QALMSADVKPEQFAILVRDMPAPPDGQTQKEFIDSYFREIYPETFYRSLVATENSKVNKI 239

Query:   238 YEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAXXXXXXXXXXXX 297
             +E+LEGYKKKLARAEA+ A + +       RPT KTGF GL+GK+VD+            
Sbjct:   240 WEKLEGYKKKLARAEAILAATNN-------RPTNKTGFCGLVGKQVDSIEYYTELINESV 292

Query:   298 PKLEAEQKITLKEKQLGAALVFFTSRXXXXXXXXXXXXXXXDTWTVSDAPESRELIWNNL 357
              KLE EQK  L EKQ  AA+VFFT+R               D WTV++APE R+L+W NL
Sbjct:   293 AKLETEQKAVLAEKQQTAAVVFFTTRVAAASAAQSLHCQMVDKWTVTEAPEPRQLLWQNL 352

Query:   358 NIKFFQRQIRHFFCFY 373
             NIK F R IR +F ++
Sbjct:   353 NIKLFSRIIRQYFIYF 368
GO:0005576 "extracellular region" evidence=ISM
GO:0016020 "membrane" evidence=IEA;IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2089850 AT3G21620 "AT3G21620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027119 AT1G62320 "AT1G62320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008860 AT1G11960 "AT1G11960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031735 AT1G32090 "AT1G32090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120673 AT4G22120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134882 AT4G04340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140210 AT4G02900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130130 AT4G15430 "AT4G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201876 AT1G10090 "AT1G10090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
pfam13967151 pfam13967, RSN1_TM, Late exocytosis, associated wi 2e-36
COG5594 827 COG5594, COG5594, Uncharacterized integral membran 7e-26
pfam02714 325 pfam02714, DUF221, Domain of unknown function DUF2 5e-08
>gnl|CDD|222479 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport Back     alignment and domain information 
 Score =  129 bits (327), Expect = 2e-36
 Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 15/164 (9%)

Query: 5   SFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLDP-WEGGSRTRNPFTWIK 63
           +FLTSL  + ++ +V   LF+ L  +P N  VY P   L G +         R  F WI 
Sbjct: 1   AFLTSLVINLVLALVFFLLFSIL--RPKNKRVYAPRTYLAGPEEERTPPPPPRGLFGWIP 58

Query: 64  EAMSSSEQDVINMSGLDTAVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNT 123
             +  S+++++  +GLD  V+  F+   + IF +  +I  P LLPV AT           
Sbjct: 59  PLLKISDEEILQHAGLDAYVFLRFLKMGIKIFLVGCVIGWPILLPVNATGG--------- 109

Query: 124 TSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYFLLWR 167
                   LDKLS+ N+   S+RLWA +V  Y  +    +LL+R
Sbjct: 110 ---NGETGLDKLSISNVVEGSNRLWAHVVVAYIFTGFVCYLLYR 150

This family represents the first three transmembrane regions of 11-TM proteins involved in vesicle transport. In S. cerevisiae these proteins are members of the yeast facilitator superfamily and are integral membrane proteins localised to the cell periphery, in particular to the bud-neck region. The distribution is consistent with a role in late exocytosis which is in agreement with the proteins' ability to substitute for the function of Sro7p, required for the sorting of the protein Enap1 into Golgi-derived vesicles destined for the cell surface. Length = 151
>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein [Function unknown] Back     alignment and domain information
>gnl|CDD|190398 pfam02714, DUF221, Domain of unknown function DUF221 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 381
COG5594 827 Uncharacterized integral membrane protein [Functio 100.0
KOG1134 728 consensus Uncharacterized conserved protein [Gener 100.0
PF13967157 RSN1_TM: Late exocytosis, associated with Golgi tr 100.0
PF02714 325 DUF221: Domain of unknown function DUF221; InterPr 99.44
PF1470385 DUF4463: Domain of unknown function (DUF4463) 99.31
TIGR01659346 sex-lethal sex-lethal family splicing factor. This 97.36
KOG0144 510 consensus RNA-binding protein CUGBP1/BRUNO (RRM su 96.81
TIGR01628 562 PABP-1234 polyadenylate binding protein, human typ 96.76
PF0007670 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or 96.6
PLN03120260 nucleic acid binding protein; Provisional 96.49
PLN03134144 glycine-rich RNA-binding protein 4; Provisional 96.49
TIGR01661 352 ELAV_HUD_SF ELAV/HuD family splicing factor. These 96.35
TIGR01648 578 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein 96.18
PF1425970 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or 96.05
KOG0149247 consensus Predicted RNA-binding protein SEB4 (RRM 95.49
TIGR01661352 ELAV_HUD_SF ELAV/HuD family splicing factor. These 95.36
KOG0122270 consensus Translation initiation factor 3, subunit 94.65
TIGR01628 562 PABP-1234 polyadenylate binding protein, human typ 94.22
TIGR01622 457 SF-CC1 splicing factor, CC1-like family. A homolog 94.08
KOG0125 376 consensus Ataxin 2-binding protein (RRM superfamil 93.53
TIGR01649 481 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor 93.38
KOG0148 321 consensus Apoptosis-promoting RNA-binding protein 93.29
PF0405997 RRM_2: RNA recognition motif 2; InterPro: IPR00720 93.15
TIGR01642509 U2AF_lg U2 snRNP auxilliary factor, large subunit, 92.92
TIGR01645 612 half-pint poly-U binding splicing factor, half-pin 92.66
PLN03121243 nucleic acid binding protein; Provisional 92.64
KOG0117 506 consensus Heterogeneous nuclear ribonucleoprotein 92.5
TIGR01649481 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor 91.07
TIGR01622457 SF-CC1 splicing factor, CC1-like family. A homolog 90.43
KOG4206221 consensus Spliceosomal protein snRNP-U1A/U2B [RNA 90.16
TIGR01645 612 half-pint poly-U binding splicing factor, half-pin 90.02
KOG0145 360 consensus RNA-binding protein ELAV/HU (RRM superfa 88.97
KOG4211 510 consensus Splicing factor hnRNP-F and related RNA- 88.95
smart0036272 RRM_2 RNA recognition motif. 88.64
KOG0107195 consensus Alternative splicing factor SRp20/9G8 (R 87.13
smart0036170 RRM_1 RNA recognition motif. 86.62
PF1389356 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or 86.14
cd0059074 RRM RRM (RNA recognition motif), also known as RBD 85.2
TIGR01648 578 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein 81.11
>COG5594 Uncharacterized integral membrane protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-66  Score=512.79  Aligned_cols=368  Identities=23%  Similarity=0.379  Sum_probs=328.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeecccccCCCCCCCCCCCCCCcccchHHhhcCCHHHHHHhcChhH
Q 016889            2 DFDSFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLDPWEGGSRTRNPFTWIKEAMSSSEQDVINMSGLDT   81 (381)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~l~lF~~lR~~~~~~~iY~pr~~~~~~~p~~~~~~~~~~f~Wi~~~~~~~~~~i~~~~GlDa   81 (381)
                      ++++|+|++.++..++++.+.+|++||+|  +++||+||+..++.+...+.+.++|+|||+.++++++|+.+++.+|+||
T Consensus        20 s~~~~~t~l~f~~~~~~~~l~~f~iLR~r--~k~lY~pr~~~~~~~~~~P~~~~ss~~gWl~~L~~i~d~~~l~~aGlD~   97 (827)
T COG5594          20 STSAVITQLVFAGLIFLVFLILFLILRKR--WKRLYAPRTNFDGQNECLPEPNPSSYWGWLEPLVKIPDEFLLQYAGLDG   97 (827)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHhcCcceeecCCCcccCCCCccchHHHHHHHHhCCHHHHHHHcCcch
Confidence            68899999999999999999999999998  6789999999876441111278999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhheeeeeeeeecCcccccCCCCCCCCCcCccccccccccccCccchHHHHHHHHHHHHHH
Q 016889           82 AVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVT  161 (381)
Q Consensus        82 ~~flrfl~~~~~lf~~~~~~~~~iLlPin~~~~~~~~~~~~~~~~~~~~~l~~~SisNv~~~s~~lw~h~~~~~l~~~~~  161 (381)
                      |+||||++||+.+|+++|++++|||+|||++.+...+ |+    ..+.++++++|++|+++ ++++|+|++.+|++.+++
T Consensus        98 y~fLrflkm~~~~~~i~sl~~ipIL~Pvn~~~~~~~~-gn----~~s~s~l~~Ls~~Nv~~-~n~~~aHvf~~~~f~~~v  171 (827)
T COG5594          98 YFFLRFLKMLIKLLFILSLILIPILLPVNYHFQKATN-GN----SDSESGLDKLSISNVSP-SNRLYAHVFLSWFFFGYV  171 (827)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHEeeeeeeccccccc-CC----ccchhhhhHhhhhcccC-CCceeeeeehhHHHHHHH
Confidence            9999999999999999999999999999988854321 11    02457899999999987 799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCC---------CCCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCc
Q 016889          162 YFLLWRGYKHVSELRADALMSPE---------VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK  232 (381)
Q Consensus       162 ~~~l~~~~~~~~~~R~~~l~~~~---------~~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~  232 (381)
                      +|.+++|++.|..+||++++++.         ++.++|||+++++|.++++   +++|.++|+++.-|++.+..+|||.+
T Consensus       172 lfii~~el~~y~~lr~a~~~~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~---~e~L~~~~~kl~~~~i~~~~l~~~~~  248 (827)
T COG5594         172 LFIIFRELRFYVVLRQAYLRSPLYQQSLLTLQNNLSSRTVLISGLPSELRS---DEELKELFDKLKVGEIDSDVLCRDLG  248 (827)
T ss_pred             HHHHHHHHHHHHHHHHHHHccHHHHHHHHhhccCCCCceEEeecCChhhcC---chhHHHHHhhcCeeeeccchhhhhhH
Confidence            99999999999999999999876         2458999999999999999   88899999999888999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhh----------cc----------------CCCCCCCCCccccccc--CCCCCccc
Q 016889          233 EANKIYEELEGYKKKLARAEAVYAES----------KS----------------AGKPEGTRPTIKTGFL--GLLGKRVD  284 (381)
Q Consensus       233 ~l~~l~~~r~~~~~~LE~~~~~~~~~----------k~----------------~~~~~~~rp~~r~~~~--~~~g~~vd  284 (381)
                      .+.++.++|++..+++|.++.++...          |+                .+.|+++||+||.+-.  ++.|||||
T Consensus       249 ~l~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~~i~gKkVd  328 (827)
T COG5594         249 TLQELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNKGIFGKKVD  328 (827)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhhhhhhhccceec
Confidence            99999999999999999998876421          10                1245678999997754  67899999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCCCCeE-EeeCCCCCCeeeCCCCCChhh
Q 016889          285 AIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWT-VSDAPESRELIWNNLNIKFFQ  363 (381)
Q Consensus       285 ai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~-v~~AP~P~DIiW~NL~~~~~~  363 (381)
                      +|||+++++.+++++|++.|+......+.++|||||+|+..||+|+|....+++.... ++.||+|+||+|+|+..++++
T Consensus       329 aI~y~s~~l~~l~~~i~~~r~~~~~~t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~W~Nl~ls~~~  408 (827)
T COG5594         329 AIDYYSAKLTKLDAEIENARKSLYENTPTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRKE  408 (827)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccCccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccccccccchHHHHH
Confidence            9999999999999999999998777778889999999999999999999999998776 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 016889          364 RQIRHFFCFYPRLRGFL  380 (381)
Q Consensus       364 r~~R~~~~~~~~~~~~~  380 (381)
                      |..|++.+++++++.++
T Consensus       409 r~~k~~~~ni~~il~II  425 (827)
T COG5594         409 RLFKRISANILFILLII  425 (827)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998776653

>KOG1134 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport Back     alignment and domain information
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length Back     alignment and domain information
>PF14703 DUF4463: Domain of unknown function (DUF4463) Back     alignment and domain information
>TIGR01659 sex-lethal sex-lethal family splicing factor Back     alignment and domain information
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>PF00076 RRM_1: RNA recognition motif Back     alignment and domain information
>PLN03120 nucleic acid binding protein; Provisional Back     alignment and domain information
>PLN03134 glycine-rich RNA-binding protein 4; Provisional Back     alignment and domain information
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor Back     alignment and domain information
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family Back     alignment and domain information
>PF14259 RRM_6: RNA recognition motif (a Back     alignment and domain information
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only] Back     alignment and domain information
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor Back     alignment and domain information
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>TIGR01622 SF-CC1 splicing factor, CC1-like family Back     alignment and domain information
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only] Back     alignment and domain information
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family Back     alignment and domain information
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2 Back     alignment and domain information
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family Back     alignment and domain information
>PLN03121 nucleic acid binding protein; Provisional Back     alignment and domain information
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family Back     alignment and domain information
>TIGR01622 SF-CC1 splicing factor, CC1-like family Back     alignment and domain information
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] Back     alignment and domain information
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family Back     alignment and domain information
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] Back     alignment and domain information
>smart00362 RRM_2 RNA recognition motif Back     alignment and domain information
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>smart00361 RRM_1 RNA recognition motif Back     alignment and domain information
>PF13893 RRM_5: RNA recognition motif Back     alignment and domain information
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability Back     alignment and domain information
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.6 bits (138), Expect = 4e-09
 Identities = 78/462 (16%), Positives = 151/462 (32%), Gaps = 108/462 (23%)

Query: 3   FDSFLTSLGTSFIIFV--VLMCLFAWLSSK-------P-GNTVVY--YPNRILKGLDPWE 50
           F + L+        FV  VL   + +L S        P   T +Y    +R+      + 
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 51  GGSRTR-NPFTWIKEAMSS--SEQDVI--NMSG-----------LDTAV--YFVFMSTVL 92
             + +R  P+  +++A+      ++V+   + G           L   V     F     
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF----- 182

Query: 93  GIFALS-G--------IILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLS------- 136
            IF L+          + +L  LL     + + ++   +   +   +   +L        
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 137 -------MGNITAKSSRLW-AF------LVATYWVSFVTYFLLWRGYKHVS-ELRADALM 181
                  + N+  ++++ W AF      L+ T +   VT FL      H+S +  +  L 
Sbjct: 243 YENCLLVLLNV--QNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLT 299

Query: 182 SPEVRPQQFA-VLVRDLPDLPKGQSRKE--QVDSYFKA---IYPDTFYRSMVVTNNKEAN 235
             EV+       L     DLP+ +      +  S           T+     V  +K   
Sbjct: 300 PDEVK-SLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 236 KI---YEELE-GYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNE 291
            I      LE    +K+    +V+        P      I T  L L+    D I+    
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVF--------PPSAH--IPTILLSLIWF--DVIKSDVM 405

Query: 292 KI-KEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESR 350
            +  ++      E++   KE  +    ++   +V   +    LH  +VD + +    +S 
Sbjct: 406 VVVNKLHKYSLVEKQ--PKESTISIPSIYLELKVKLENEYA-LHRSIVDHYNIPKTFDSD 462

Query: 351 ELIWNNLNIKFFQRQIRHF--------FCFYPRLR---GFLQ 381
           +LI   L+  F+     H            +  +     FL+
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
4fxv_A99 ELAV-like protein 1; RNA recognition motif, putati 97.65
2dnz_A95 Probable RNA-binding protein 23; RNA recognition m 97.64
4a8x_A88 RNA-binding protein with serine-rich domain 1; tra 97.53
3s8s_A110 Histone-lysine N-methyltransferase SETD1A; chromat 97.53
2jrs_A108 RNA-binding protein 39; RNA binding motif of RBM39 97.5
2dgp_A106 Bruno-like 4, RNA binding protein; RRM domain, str 97.44
1fxl_A167 Paraneoplastic encephalomyelitis antigen HUD; prot 97.44
1x5s_A102 Cold-inducible RNA-binding protein; structure geno 97.43
2lkz_A95 RNA-binding protein 5; RRM; NMR {Homo sapiens} 97.41
2dnh_A105 Bruno-like 5, RNA binding protein; RRM domain, RBD 97.4
2lxi_A91 RNA-binding protein 10; NMR {Homo sapiens} 97.38
1whw_A99 Hypothetical protein riken cDNA 1200009A02; RNA re 97.38
3p5t_L90 Cleavage and polyadenylation specificity factor S; 97.37
2do4_A100 Squamous cell carcinoma antigen recognized by T- c 97.36
3bs9_A87 Nucleolysin TIA-1 isoform P40; RNA recognition mot 97.33
2x1f_A96 MRNA 3'-END-processing protein RNA15; transcriptio 97.33
2dgs_A99 DAZ-associated protein 1; RRM domain, structural g 97.32
2dgv_A92 HnRNP M, heterogeneous nuclear ribonucleoprotein M 97.32
2cph_A107 RNA binding motif protein 19; RNA recognition moti 97.31
1x5u_A105 Splicing factor 3B subunit 4 (spliceosome associat 97.31
3mdf_A85 Peptidyl-prolyl CIS-trans isomerase E; RRM domain, 97.3
3md1_A83 Nuclear and cytoplasmic polyadenylated RNA-bindin 97.3
2fy1_A116 RNA-binding motif protein, Y chromosome, family 1 97.29
4f25_A115 Polyadenylate-binding protein 1; RRM fold, transla 97.26
2cpz_A115 CUG triplet repeat RNA-binding protein 1; RRM doma 97.25
1b7f_A168 Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP 97.24
1x5t_A96 Splicing factor 3B subunit 4; structure genomics, 97.22
2d9p_A103 Polyadenylate-binding protein 3; RRM domain, struc 97.21
1p27_B106 RNA-binding protein 8A; nuclear protein, mRNA spli 97.2
1s79_A103 Lupus LA protein; RRM, alpha/beta, RNA binding pro 97.2
2e5h_A94 Zinc finger CCHC-type and RNA-binding motif- conta 97.19
2ywk_A95 Putative RNA-binding protein 11; RRM-domain, struc 97.18
2cqi_A103 Nucleolysin TIAR; RNA recognition motif, RRM, RNA 97.17
2cq3_A103 RNA-binding protein 9; RRM domain, structural geno 97.16
2cpf_A98 RNA binding motif protein 19; RNA recognition moti 97.16
2cqc_A95 Arginine/serine-rich splicing factor 10; RNA recog 97.15
3nmr_A175 Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl 97.14
2div_A99 TRNA selenocysteine associated protein; structural 97.14
2dhg_A104 TRNA selenocysteine associated protein (SECP43); R 97.13
2dgo_A115 Cytotoxic granule-associated RNA binding protein 1 97.13
2cqg_A103 TDP-43, TAR DNA-binding protein-43; RNA recognitio 97.12
1x4h_A111 RNA-binding protein 28; structural genomics, RRM d 97.1
2dnm_A103 SRP46 splicing factor; RRM domain, RBD, structural 97.09
1p1t_A104 Cleavage stimulation factor, 64 kDa subunit; RNA r 97.09
3ns6_A100 Eukaryotic translation initiation factor 3 subuni; 97.07
1h2v_Z156 20 kDa nuclear CAP binding protein; CAP-binding-co 97.05
2dha_A123 FLJ20171 protein; RRM domain, structural genomics, 97.05
2cq0_A103 Eukaryotic translation initiation factor 3 subunit 97.04
2kt5_A124 RNA and export factor-binding protein 2; chaperone 97.03
3ulh_A107 THO complex subunit 4; nuclear protein, RNA bindin 97.02
1wi8_A104 EIF-4B, eukaryotic translation initiation factor 4 97.02
3ex7_B126 RNA-binding protein 8A; protein-RNA complex, mRNA 97.02
3md3_A166 Nuclear and cytoplasmic polyadenylated RNA-bindin 97.0
2cqb_A102 Peptidyl-prolyl CIS-trans isomerase E; RNA recogni 96.99
1x4c_A108 Splicing factor, arginine/serine-rich 1; structura 96.98
3lqv_A115 PRE-mRNA branch site protein P14; cysless mutant, 96.97
2dnp_A90 RNA-binding protein 14; RRM domain, RBD, structura 96.96
2a3j_A127 U1 small nuclear ribonucleoprotein A; computationa 96.96
2la6_A99 RNA-binding protein FUS; structural genomics, nort 96.95
2kxn_B129 Transformer-2 protein homolog beta; SR protein, RR 96.95
1x4a_A109 Splicing factor, arginine/serine-rich 1 (splicing 96.95
1oo0_B110 CG8781-PA, drosophila Y14; RNA recognition motif, 96.94
1x4e_A85 RNA binding motif, single-stranded interacting pro 96.94
2dnq_A90 RNA-binding protein 4B; RRM domain,RBD, structural 96.94
4f02_A213 Polyadenylate-binding protein 1; mRNA, eukaryotic 96.93
2do0_A114 HnRNP M, heterogeneous nuclear ribonucleoprotein M 96.93
1x5o_A114 RNA binding motif, single-stranded interacting pro 96.93
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 96.84
2dng_A103 Eukaryotic translation initiation factor 4H; RRM d 96.84
1u6f_A139 Tcubp1, RNA-binding protein UBP1; trypanosome, mRN 96.83
2qfj_A216 FBP-interacting repressor; protein-DNA complex; HE 96.82
2cqp_A98 RNA-binding protein 12; RNA recognition motif, RRM 96.81
2f3j_A177 RNA and export factor binding protein 2; RRM domai 96.81
2cqd_A116 RNA-binding region containing protein 1; RNA recog 96.8
1wg5_A104 Heterogeneous nuclear ribonucleoprotein H; structu 96.78
1l3k_A196 Heterogeneous nuclear ribonucleoprotein A1; nuclea 96.77
2dgw_A91 Probable RNA-binding protein 19; RRM domain, struc 96.77
2dgu_A103 Heterogeneous nuclear ribonucleoprotein Q; RRM dom 96.77
1why_A97 Hypothetical protein riken cDNA 1810017N16; RNA re 96.75
2cpj_A99 Non-POU domain-containing octamer-binding protein; 96.72
2ki2_A90 SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA 96.7
1nu4_A97 U1A RNA binding domain; RNA recognition motif, U1 96.68
2dis_A109 Unnamed protein product; structural genomics, RRM 96.66
2rs2_A109 Musashi-1, RNA-binding protein musashi homolog 1; 96.65
3beg_B115 Splicing factor, arginine/serine-rich 1; kinase, S 96.65
2cpe_A113 RNA-binding protein EWS; RNA recognition motif, RR 96.64
2e44_A96 Insulin-like growth factor 2 mRNA binding protein 96.64
1wf1_A110 RNA-binding protein RALY; structural genomics, RRM 96.6
2dnl_A114 Cytoplasmic polyadenylation element binding protei 96.56
1whx_A111 Hypothetical protein riken cDNA 1200009A02; RNA re 96.56
2ek1_A95 RNA-binding protein 12; RNA recognition motif, dim 96.56
2j76_E100 EIF-4B, EIF4B, eukaryotic translation initiation f 96.55
3nmr_A175 Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl 96.54
2krb_A81 Eukaryotic translation initiation factor 3 subunit 96.53
2dnn_A109 RNA-binding protein 12; RRM domain, RBD, structura 96.52
2kn4_A158 Immunoglobulin G-binding protein G, splicing FACT 96.49
1rk8_A165 CG8781-PA, CG8781-PA protein; mRNA processing, RRM 96.48
1wez_A102 HnRNP H', FTP-3, heterogeneous nuclear ribonucleop 96.47
2jvr_A111 Nucleolar protein 3; RNA recognition motif, nucleu 96.47
3n9u_C156 Cleavage and polyadenylation specificity factor S; 96.45
2lea_A135 Serine/arginine-rich splicing factor 2; SR protein 96.44
2cpy_A114 RNA-binding protein 12; RRM domain, structural gen 96.42
2e5j_A97 Methenyltetrahydrofolate synthetase domain contain 96.41
2kvi_A96 Nuclear polyadenylated RNA-binding protein 3; RNA- 96.4
2i2y_A150 Fusion protein consists of immunoglobin G- binding 96.39
1b7f_A168 Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP 96.39
1x4f_A112 Matrin 3; structural genomics, RRM domain, NPPSFA, 96.35
2db1_A118 Heterogeneous nuclear ribonucleoprotein F; RRM dom 96.33
3sde_A 261 Paraspeckle component 1; RRM, anti parallel right 96.32
2cpi_A111 CCR4-NOT transcription complex subunit 4; RNA reco 96.32
2jvo_A108 Nucleolar protein 3; nucleus, phosphorylation, rib 96.31
1fxl_A167 Paraneoplastic encephalomyelitis antigen HUD; prot 96.28
2cjk_A167 Nuclear polyadenylated RNA-binding protein 4; HRP1 96.28
2voo_A193 Lupus LA protein; RNA-binding protein, RNA recogni 96.24
2qfj_A216 FBP-interacting repressor; protein-DNA complex; HE 96.24
2hgl_A136 HNRPF protein, heterogeneous nuclear ribonucleopro 96.23
2fc8_A102 NCL protein; structure genomics, RRM_1 domain, str 96.22
3smz_A 284 Protein raver-1, ribonucleoprotein PTB-binding 1; 96.13
2adc_A229 Polypyrimidine tract-binding protein 1; RBD, RRM, 96.1
2hgm_A126 HNRPF protein, heterogeneous nuclear ribonucleopro 96.06
2pe8_A105 Splicing factor 45; RRM, protein binding; 2.00A {H 96.02
3q2s_C229 Cleavage and polyadenylation specificity factor S; 95.98
2lmi_A107 GRSF-1, G-rich sequence factor 1; G-rich RNA seque 95.91
3md3_A166 Nuclear and cytoplasmic polyadenylated RNA-bindin 95.91
1qm9_A198 Polypyrimidine tract-binding protein; ribonucleopr 95.84
2wbr_A89 GW182, gawky, LD47780P; DNA-binding protein, RRM, 95.81
2fc9_A101 NCL protein; structure genomics, RRM_1 domain, str 95.79
2cpx_A115 Hypothetical protein FLJ11016; RRM domain, structu 95.76
1fj7_A101 Nucleolin RBD1, protein C23; RNP, RRM, RNA binding 95.74
2g4b_A172 Splicing factor U2AF 65 kDa subunit; protein-RNA c 95.69
3pgw_S 437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 95.57
2diu_A96 KIAA0430 protein; structural genomics, RRM domain, 95.57
3tyt_A205 Heterogeneous nuclear ribonucleoprotein L; ferredo 95.55
2ghp_A 292 U4/U6 snRNA-associated splicing factor PRP24; RNA 95.43
1l3k_A196 Heterogeneous nuclear ribonucleoprotein A1; nuclea 95.38
1fje_B175 Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin 95.37
1sjr_A164 Polypyrimidine tract-binding protein 1; extended b 95.2
3sde_A261 Paraspeckle component 1; RRM, anti parallel right 95.15
2yh0_A198 Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli 95.08
3smz_A284 Protein raver-1, ribonucleoprotein PTB-binding 1; 95.03
4f02_A213 Polyadenylate-binding protein 1; mRNA, eukaryotic 95.01
2cjk_A167 Nuclear polyadenylated RNA-binding protein 4; HRP1 94.84
1wel_A124 RNA-binding protein 12; structural genomics, NPPSF 94.78
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 94.75
3pgw_A282 U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c 94.7
3s7r_A87 Heterogeneous nuclear ribonucleoprotein A/B; ferre 94.63
3egn_A143 RNA-binding protein 40; RNA recognition motif (RRM 94.44
3ucg_A89 Polyadenylate-binding protein 2; ferredoxin-like, 94.43
2cpd_A99 Apobec-1 stimulating protein; RNA recognition moti 94.38
1sjq_A105 Polypyrimidine tract-binding protein 1; babbab mot 94.36
2g4b_A172 Splicing factor U2AF 65 kDa subunit; protein-RNA c 94.34
1jmt_A104 Splicing factor U2AF 35 kDa subunit; RRM, RNA spli 94.21
2dgt_A92 RNA-binding protein 30; RRM domain, structural gen 94.1
1qm9_A198 Polypyrimidine tract-binding protein; ribonucleopr 94.08
3d2w_A89 TAR DNA-binding protein 43; DP-43 proteinopathy, T 94.07
3tyt_A205 Heterogeneous nuclear ribonucleoprotein L; ferredo 94.03
2ytc_A85 PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s 94.0
2adc_A229 Polypyrimidine tract-binding protein 1; RBD, RRM, 93.99
3zzy_A130 Polypyrimidine tract-binding protein 1; protein bi 93.79
2xs2_A102 Deleted in azoospermia-like; RNA binding protein-R 93.71
1wex_A104 Hypothetical protein (riken cDNA 2810036L13); stru 93.63
2dit_A112 HIV TAT specific factor 1 variant; structural geno 93.49
2dh8_A105 DAZ-associated protein 1; RRM domain, structural g 93.45
1wf0_A88 TDP-43, TAR DNA-binding protein-43; structural gen 93.38
2ad9_A119 Polypyrimidine tract-binding protein 1; RBD, RRM, 93.3
3r27_A100 HnRNP L, heterogeneous nuclear ribonucleoprotein L 93.18
2ghp_A292 U4/U6 snRNA-associated splicing factor PRP24; RNA 93.13
1uaw_A77 Mouse-musashi-1; RNP-type structure, RNA binding p 93.01
2khc_A118 Testis-specific RNP-type RNA binding protein; RRM, 93.01
1x4g_A109 Nucleolysin TIAR; structural genomics, RRM domain, 92.93
2err_A109 Ataxin-2-binding protein 1; protein-RNA complex, R 92.81
1iqt_A75 AUF1, heterogeneous nuclear ribonucleoprotein D0; 92.76
2cq1_A101 PTB-like protein L; RRM domain, structural genomic 92.6
2dgx_A96 KIAA0430 protein; RRM domain, structural genomics, 92.55
2cq4_A114 RNA binding motif protein 23; RRM domain, structur 92.51
2jwn_A124 Embryonic polyadenylate-binding protein 2-B; epabp 91.94
2hvz_A101 Splicing factor, arginine/serine-rich 7; RRM, RNA 91.69
2mss_A75 Protein (musashi1); RNA-binding domain, RNA bindin 91.65
1x4d_A102 Matrin 3; structural genomics, RRM domain, NPPSFA, 91.65
1x4b_A116 Heterogeneous nuclear ribonucleoproteins A2/B1; st 91.59
2la4_A101 Nuclear and cytoplasmic polyadenylated RNA-bindin 90.7
2xnq_A97 Nuclear polyadenylated RNA-binding protein 3; tran 89.96
3s6e_A114 RNA-binding protein 39; ferredoxin-like, structura 89.84
2d9o_A100 DNAJ (HSP40) homolog, subfamily C, member 17; RRM 89.81
1wg1_A88 KIAA1579 protein, homolog EXC-7; RBD, structural g 89.69
2hzc_A87 Splicing factor U2AF 65 kDa subunit; RNA splicing, 89.61
3v4m_A105 Splicing factor U2AF 65 kDa subunit; canonical RNA 89.57
2m2b_A131 RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio 89.46
2e5g_A94 U6 snRNA-specific terminal uridylyltransferase 1; 88.0
2hgn_A139 Heterogeneous nuclear ribonucleoprotein F; RNA rec 87.86
2nlw_A105 Eukaryotic translation initiation factor 3 subunit 87.48
2hvz_A101 Splicing factor, arginine/serine-rich 7; RRM, RNA 85.57
2dhx_A104 Poly (ADP-ribose) polymerase family, member 10 var 85.38
1fjc_A96 Nucleolin RBD2, protein C23; RNP, RRM, RNA binding 85.36
2dgx_A96 KIAA0430 protein; RRM domain, structural genomics, 84.88
1wg1_A88 KIAA1579 protein, homolog EXC-7; RBD, structural g 84.77
2cqh_A93 IGF-II mRNA-binding protein 2 isoform A; RNA recog 84.54
1x5p_A97 Negative elongation factor E; structure genomics, 84.52
2mss_A75 Protein (musashi1); RNA-binding domain, RNA bindin 84.48
2j8a_A136 Histone-lysine N-methyltransferase, H3 lysine-4 sp 84.26
2cqh_A93 IGF-II mRNA-binding protein 2 isoform A; RNA recog 83.71
2cpd_A99 Apobec-1 stimulating protein; RNA recognition moti 82.88
2xnq_A97 Nuclear polyadenylated RNA-binding protein 3; tran 82.55
1x4g_A109 Nucleolysin TIAR; structural genomics, RRM domain, 82.26
2bz2_A121 Negative elongation factor E; NELF E, RNA recognit 82.05
1uaw_A77 Mouse-musashi-1; RNP-type structure, RNA binding p 81.99
2lcw_A116 RNA-binding protein FUS; RRM, nucleic acid binding 81.82
3pgw_A282 U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c 80.44
1wex_A104 Hypothetical protein (riken cDNA 2810036L13); stru 80.4
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens} Back     alignment and structure
Probab=97.65  E-value=0.00038  Score=53.03  Aligned_cols=38  Identities=18%  Similarity=0.297  Sum_probs=31.7

Q ss_pred             CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889          187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN  230 (381)
Q Consensus       187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d  230 (381)
                      .+..+|.|.|||.+.+    ++.|+++|+++  |.|.++.+.+|
T Consensus        17 ~~gt~lfV~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d   54 (99)
T 4fxv_A           17 FQGTNLIVNYLPQNMT----QDELRSLFSSI--GEVESAKLIRD   54 (99)
T ss_dssp             CCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred             CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEeEeeec
Confidence            3457899999999886    89999999987  67989888764
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Back     alignment and structure
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Back     alignment and structure
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Back     alignment and structure
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Back     alignment and structure
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Back     alignment and structure
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Back     alignment and structure
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Back     alignment and structure
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens} Back     alignment and structure
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Back     alignment and structure
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Back     alignment and structure
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Back     alignment and structure
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Back     alignment and structure
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A* Back     alignment and structure
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 Back     alignment and structure
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Back     alignment and structure
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Back     alignment and structure
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Back     alignment and structure
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Back     alignment and structure
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Back     alignment and structure
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Back     alignment and structure
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Back     alignment and structure
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A Back     alignment and structure
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Back     alignment and structure
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Back     alignment and structure
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Back     alignment and structure
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Back     alignment and structure
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B Back     alignment and structure
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Back     alignment and structure
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Back     alignment and structure
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Back     alignment and structure
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Back     alignment and structure
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Back     alignment and structure
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Back     alignment and structure
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Back     alignment and structure
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Back     alignment and structure
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Back     alignment and structure
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} Back     alignment and structure
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Back     alignment and structure
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} Back     alignment and structure
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Back     alignment and structure
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Back     alignment and structure
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Back     alignment and structure
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Back     alignment and structure
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Back     alignment and structure
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} Back     alignment and structure
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Back     alignment and structure
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Back     alignment and structure
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Back     alignment and structure
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Back     alignment and structure
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Back     alignment and structure
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Back     alignment and structure
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Back     alignment and structure
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Back     alignment and structure
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Back     alignment and structure
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Back     alignment and structure
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Back     alignment and structure
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A Back     alignment and structure
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Back     alignment and structure
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Back     alignment and structure
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E Back     alignment and structure
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Back     alignment and structure
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Back     alignment and structure
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A Back     alignment and structure
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Back     alignment and structure
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Back     alignment and structure
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Back     alignment and structure
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} Back     alignment and structure
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Back     alignment and structure
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Back     alignment and structure
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Back     alignment and structure
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Back     alignment and structure
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Back     alignment and structure
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Back     alignment and structure
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Back     alignment and structure
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Back     alignment and structure
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Back     alignment and structure
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E Back     alignment and structure
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Back     alignment and structure
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Back     alignment and structure
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Back     alignment and structure
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A Back     alignment and structure
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} Back     alignment and structure
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Back     alignment and structure
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Back     alignment and structure
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 Back     alignment and structure
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Back     alignment and structure
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Back     alignment and structure
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Back     alignment and structure
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Back     alignment and structure
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A Back     alignment and structure
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Back     alignment and structure
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Back     alignment and structure
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Back     alignment and structure
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Back     alignment and structure
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Back     alignment and structure
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Back     alignment and structure
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Back     alignment and structure
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Back     alignment and structure
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A Back     alignment and structure
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Back     alignment and structure
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Back     alignment and structure
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A Back     alignment and structure
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens} Back     alignment and structure
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Back     alignment and structure
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} Back     alignment and structure
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Back     alignment and structure
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Back     alignment and structure
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Back     alignment and structure
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae} Back     alignment and structure
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Back     alignment and structure
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Back     alignment and structure
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Back     alignment and structure
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
d1b7fa182 Sex-lethal protein {Drosophila melanogaster [TaxId 97.9
d1b7fa285 Sex-lethal protein {Drosophila melanogaster [TaxId 97.88
d1x5ua193 Splicing factor 3B subunit 4 {Human (Homo sapiens) 97.85
d2ghpa386 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 97.85
d1h2vz_93 CBP20, 20KDa nuclear cap-binding protein {Human (H 97.81
d1x5sa190 Cold-inducible RNA-binding protein {Human (Homo sa 97.78
d1rk8a_88 RNA-binding protein 8 {Fruit fly (Drosophila melan 97.76
d1fxla285 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 97.7
d1l3ka184 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 97.68
d1fxla182 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 97.67
d2cqga190 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 97.61
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 97.61
d2cpha194 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 97.6
d2cqba189 Peptidyl-prolyl cis-trans isomerase E, N-terminal 97.58
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 97.58
d1p1ta_104 Cleavage stimulation factor, 64 kda subunit {Human 97.57
d1cvja180 Poly(A)-binding protein {Human (Homo sapiens) [Tax 97.54
d2cqca183 Arginine/serine-rich splicing factor 10 {Human (Ho 97.5
d2ghpa181 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 97.49
d1zh5a285 Lupus LA protein {Human (Homo sapiens) [TaxId: 960 97.47
d1whwa_99 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 97.47
d2b0ga183 Splicesomal U1A protein {Drosophila melanogaster [ 97.46
d2cq0a190 Eukaryotic translation initiation factor 3 subunit 97.45
d2u2fa_85 Splicing factor U2AF 65 KDa subunit {Human (Homo s 97.45
d2cpza1102 CUG triplet repeat RNA-binding protein 1 {Human (H 97.41
d1x4ha198 RNA-binding protein 28 {Mouse (Mus musculus) [TaxI 97.4
d2cpfa185 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 97.38
d1hd0a_75 Heterogeneous nuclear ribonucleoprotein d0 {Human 97.37
d1whxa_111 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 97.32
d2cqda1103 RNA-binding region containing protein 1 {Human (Ho 97.31
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 97.29
d2cpja186 Non-POU domain-containing octamer-binding protein, 97.28
d2adca1109 Polypyrimidine tract-binding protein {Human (Homo 97.28
d1x0fa175 Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s 97.25
d1u6fa1139 RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId 97.22
d1nu4a_91 Splicesomal U1A protein {Human (Homo sapiens) [Tax 97.21
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 97.19
d2disa196 Hypothetical protein FLJ20273 {Human (Homo sapiens 97.18
d1uawa_77 Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} 97.16
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 97.13
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 97.11
d1x4ba1103 Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu 97.1
d2adca288 Polypyrimidine tract-binding protein {Human (Homo 97.08
d1x4fa199 Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} 97.06
d2cpia189 E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc 97.02
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 96.94
d1x4ea172 RNA-binding motif, single-stranded-interacting pro 96.92
d1wi8a_104 Eukaryotic translation initiation factor 4B {Human 96.9
d2msta_75 Neural RNA-binding protein Musashi-1 {Mouse (Mus m 96.88
d1l3ka279 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 96.87
d2cpda186 APOBEC1 stimulating protein {Human (Homo sapiens) 96.81
d1x5oa1101 RNA-binding motif, single-stranded-interacting pro 96.79
d1wf2a_98 Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu 96.66
d2bz2a179 Negative elongation factor E, NELF-E {Human (Homo 96.62
d2cpxa1102 RNA-binding protein 41, RBM41 {Human (Homo sapiens 96.57
d2cpea1101 RNA-binding protein EWS {Human (Homo sapiens) [Tax 96.56
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 96.5
d1wg5a_104 Heterogeneous nuclear ribonucleoprotein H' {Human 96.33
d1x5ta183 Splicing factor 3B subunit 4 {Human (Homo sapiens) 96.23
d2adba1108 Polypyrimidine tract-binding protein {Human (Homo 96.21
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 96.11
d2cpya1103 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 95.67
d1weya_104 Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090 95.65
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 95.57
d1u1qa_183 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 95.39
d1x4ga196 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 94.74
d2cq4a1101 RNA binding protein 23 {Human (Homo sapiens) [TaxI 94.62
d1wela1112 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 94.47
d1whya_97 Putative RNA-binding protein 15B, Rbm15b {Mouse (M 94.45
d1wi6a175 Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M 93.89
d1wg4a_98 Splicing factor, arginine/serine-rich 9 (SFRS9) {M 93.84
d3begb187 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 93.5
d1wf0a_88 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 93.44
d2cq1a188 Polypyrimidine tract-binding protein 2, PTBP2 {Hum 93.32
d1wexa_104 Heterogeneous nuclear ribonucleoprotein L-like {Mo 92.78
d1u1qa_183 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 92.01
d1x4da189 Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} 91.72
d2dita199 HIV Tat-specific factor 1 {Human (Homo sapiens) [T 91.37
d1wg1a_88 Probable RNA-binding protein KIAA1579 {Human (Homo 90.41
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_104 U2 89.09
d1o0pa_104 Splicing factor U2AF 65 KDa subunit {Human (Homo s 88.71
d1x4ga196 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 88.16
d1whya_97 Putative RNA-binding protein 15B, Rbm15b {Mouse (M 85.32
d2cqha180 IGF-II mRNA-binding protein 2 isoform A {Human (Ho 84.54
d1fjca_96 Nucleolin {Golden hamster (Mesocricetus auratus) [ 84.36
d1wg1a_88 Probable RNA-binding protein KIAA1579 {Human (Homo 83.72
d3begb187 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 83.48
d2cq1a188 Polypyrimidine tract-binding protein 2, PTBP2 {Hum 83.22
d1wf0a_88 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 81.61
d1x4da189 Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} 80.06
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.90  E-value=3.4e-05  Score=54.95  Aligned_cols=78  Identities=24%  Similarity=0.283  Sum_probs=58.7

Q ss_pred             CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 016889          188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT  267 (381)
Q Consensus       188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~  267 (381)
                      ++.+|.|.|||.+++    ++.|+++|+++  |.|.++.+++|..                                   
T Consensus         1 s~t~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i~~~~~-----------------------------------   39 (82)
T d1b7fa1           1 SNTNLIVNYLPQDMT----DRELYALFRAI--GPINTCRIMRDYK-----------------------------------   39 (82)
T ss_dssp             CCSEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCEETT-----------------------------------
T ss_pred             CCCEEEEeCCCCCCC----HHHHHHHHHHh--CCcceeeeeeecc-----------------------------------
Confidence            357899999999986    89999999988  4688877654210                                   


Q ss_pred             CCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCCC--CeEEee
Q 016889          268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVD--TWTVSD  345 (381)
Q Consensus       268 rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~--~~~v~~  345 (381)
                                                               ..++.|.|||+|.++.+|..|.+.+....-.  .+.|+.
T Consensus        40 -----------------------------------------~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~   78 (82)
T d1b7fa1          40 -----------------------------------------TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY   78 (82)
T ss_dssp             -----------------------------------------TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             -----------------------------------------cCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence                                                     1134679999999999999999987655332  355776


Q ss_pred             CC
Q 016889          346 AP  347 (381)
Q Consensus       346 AP  347 (381)
                      |.
T Consensus        79 a~   80 (82)
T d1b7fa1          79 AR   80 (82)
T ss_dssp             CC
T ss_pred             cC
Confidence            64
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure