Citrus Sinensis ID: 016929

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLPSSPVASQPAQAANALPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEPSVPISSSTSNTSSVSLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL
ccccccccccccccccccEEEEccccccccccccEEEEEEccccccccHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
EccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHccccccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHHHHccccccccHHHcccccHHHHHHHHHHHHHHccccccccHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mcfdcnaknptwasVTYGIFLCIDCSAVHRSLGVHISfvrstnldswSAEQLKMMVYGGNNRAQVFFkqhgwtdggkiEAKYTSRAAELYKQILAKEVAKNMaeeaglpsspvasqpaqaanalpdvkiqdapkenyqgrqetqdapgspkvsrtvltstvkkplgakksgktgglgarkltskpseslyeqkpeepsvpissstsntssvslpfasrfeyvdnvqsselssggpqvlshvappksssffadygmdngfqkksgsskVQIQETDEARKKFSnaksisssqffgdqnnsidmdtQVSLQkfsgsasissadlfghdsdnasLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL
MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLPSSPVASQPAQAANALPDVKIQDAPKENYQgrqetqdapgspkvsrtvltstvkkplgakksgktgglgarkltskpseslyeqkpeepsvpissstsnTSSVSLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAgetgkklsslasslitdiqdril
MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLpsspvasqpaqaanaLPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEpsvpissstsntssvsLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL
**FDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAK**************************************************************************************************************************************************************************************************************************************************I*****************************************
MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVA***********************************************************************************************************************************************************************************************************************************************************************KLSSLASSLITDIQDRIL
MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNM*******************NALPDVKIQDAPK*********************VLTSTVKKPLGAKKSGKTGGLGARKLTSK***************************SLPFASRFEYVDN************VLSHVAPPKSSSFFADYGMDNGF**************************ISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL
MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEA*********************************************************************************************************************************************************************************************N**IDMDTQVSLQ****************DSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLPSSPVASQPAQAANALPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEPSVPISSSTSNTSSVSLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query380 2.2.26 [Sep-21-2011]
Q8H100413 Probable ADP-ribosylation yes no 0.992 0.912 0.669 1e-145
Q9FIQ0402 Probable ADP-ribosylation no no 0.978 0.925 0.648 1e-137
O82171395 ADP-ribosylation factor G no no 0.955 0.918 0.674 1e-130
Q9D8S3523 ADP-ribosylation factor G yes no 0.468 0.340 0.411 1e-31
A1L520 520 ADP-ribosylation factor G yes no 0.236 0.173 0.641 2e-31
Q8N6H7 521 ADP-ribosylation factor G no no 0.236 0.172 0.630 5e-31
Q17R07 517 ADP-ribosylation factor G no no 0.244 0.179 0.631 5e-31
Q4R4C9516 ADP-ribosylation factor G N/A no 0.473 0.348 0.409 6e-31
Q9NP61516 ADP-ribosylation factor G no no 0.473 0.348 0.409 7e-31
Q99K28 520 ADP-ribosylation factor G no no 0.236 0.173 0.630 7e-31
>sp|Q8H100|AGD8_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1 Back     alignment and function desciption
 Score =  514 bits (1325), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 261/390 (66%), Positives = 317/390 (81%), Gaps = 13/390 (3%)

Query: 1   MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGN 60
           +CFDC+AKNPTWASVTYGIFLCIDCSA HR+LGVHISFVRSTNLDSWS EQL+ M++GGN
Sbjct: 27  VCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGN 86

Query: 61  NRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEE--AGLPSSPVA-SQP 117
           NRAQVFFKQHGWTDGGKIEAKYTSRAA+LY+QILAKEVAK +AEE  +GL SSPVA SQ 
Sbjct: 87  NRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQL 146

Query: 118 AQAANALPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLG 177
            + +N +    +++   E    + E   A  SPK S TV+ ST KKP+GAK++GKTGGLG
Sbjct: 147 PEVSNGVSSYSVKE---ELPLSKHEATSATSSPKASNTVVPSTFKKPIGAKRTGKTGGLG 203

Query: 178 ARKLTSKPSESLYEQKPEE--PSVPISSSTSN---TSSVSLPFASRFEYVDNVQSSELSS 232
           ARKLT+KP ++LYEQKPEE  P +P  SST+N    SS    FASRFEY D++QS   S 
Sbjct: 204 ARKLTTKPKDNLYEQKPEEVAPVIPAVSSTNNGESKSSAGSSFASRFEYNDDLQSGGQSV 263

Query: 233 GGPQVLSHVAPPKSSSFFADYGMD--NGFQKKSGSSKVQIQETDEARKKFSNAKSISSSQ 290
           GG QVL+HVAPPKSSSFF+D+GMD     +  S SSK Q++E+DEARKKF+NAKSISS+Q
Sbjct: 264 GGTQVLNHVAPPKSSSFFSDFGMDSSFPKKSSSNSSKSQVEESDEARKKFTNAKSISSAQ 323

Query: 291 FFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDI 350
           +FGDQN + D++++ +LQKF+GSASISSAD +GHD D++++D+ ASDLINRLSFQAQQD+
Sbjct: 324 YFGDQNKNADLESKATLQKFAGSASISSADFYGHDQDDSNIDITASDLINRLSFQAQQDL 383

Query: 351 SSLKNIAGETGKKLSSLASSLITDIQDRIL 380
           SSL NIAGET KKL +LAS + +DIQDR+L
Sbjct: 384 SSLVNIAGETKKKLGTLASGIFSDIQDRML 413
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FIQ0|AGD9_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1 Back     alignment and function description
>sp|O82171|AGD10_ARATH ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1 Back     alignment and function description
>sp|Q9D8S3|ARFG3_MOUSE ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus GN=Arfgap3 PE=2 SV=2 Back     alignment and function description
>sp|A1L520|ARFG2_BOVIN ADP-ribosylation factor GTPase-activating protein 2 OS=Bos taurus GN=ARFGAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q8N6H7|ARFG2_HUMAN ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens GN=ARFGAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q17R07|ARFG3_BOVIN ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description
>sp|Q4R4C9|ARFG3_MACFA ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description
>sp|Q9NP61|ARFG3_HUMAN ADP-ribosylation factor GTPase-activating protein 3 OS=Homo sapiens GN=ARFGAP3 PE=1 SV=1 Back     alignment and function description
>sp|Q99K28|ARFG2_MOUSE ADP-ribosylation factor GTPase-activating protein 2 OS=Mus musculus GN=Arfgap2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
255573503404 arf gtpase-activating protein, putative 0.997 0.938 0.803 0.0
359474555405 PREDICTED: probable ADP-ribosylation fac 1.0 0.938 0.790 1e-179
224138128406 predicted protein [Populus trichocarpa] 0.994 0.931 0.781 1e-172
224126465404 predicted protein [Populus trichocarpa] 0.994 0.935 0.785 1e-172
356526713403 PREDICTED: probable ADP-ribosylation fac 0.994 0.937 0.764 1e-169
356495867403 PREDICTED: probable ADP-ribosylation fac 0.994 0.937 0.756 1e-166
449462021405 PREDICTED: probable ADP-ribosylation fac 0.997 0.935 0.746 1e-156
357517049409 ADP-ribosylation factor GTPase-activatin 0.986 0.916 0.706 1e-144
115483614407 Os10g0574800 [Oryza sativa Japonica Grou 0.978 0.914 0.675 1e-144
18414983413 putative ADP-ribosylation factor GTPase- 0.992 0.912 0.669 1e-143
>gi|255573503|ref|XP_002527677.1| arf gtpase-activating protein, putative [Ricinus communis] gi|223532982|gb|EEF34748.1| arf gtpase-activating protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/382 (80%), Positives = 348/382 (91%), Gaps = 3/382 (0%)

Query: 1   MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGN 60
           MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS EQLK+M +GGN
Sbjct: 24  MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKVMSFGGN 83

Query: 61  NRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLPSSPVASQPAQA 120
           NRAQ FFKQHGWTDGGKIEAKYTSRAA+LY+QIL+KEVAK+MAE+AGLPSSPVASQ AQA
Sbjct: 84  NRAQAFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSMAEDAGLPSSPVASQSAQA 143

Query: 121 ANALPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGARK 180
           +N  PDVK  ++P+E+  G+QET D P  PKVS  ++TSTVKKPLGAK++GKTGGLGARK
Sbjct: 144 SNGFPDVKTNESPEESSLGKQETPDVPPPPKVSHPIITSTVKKPLGAKRTGKTGGLGARK 203

Query: 181 LTSKPSESLYEQKPEEPSVPISSSTSNTSSVSLPFASRFEYVDNVQSSELSSGGPQVLSH 240
           LT+KPSESLY+QKPEEP +P+ ++T+NT      F SRFEYVDNVQS+EL SGGPQV+SH
Sbjct: 204 LTTKPSESLYDQKPEEPPLPVPAATNNTPKAGTSFTSRFEYVDNVQSTELISGGPQVISH 263

Query: 241 VAPPKSSSFFADYGMDNGFQKKS--GSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNS 298
           V+PPKSSSFFA++GMD+GFQKKS   SSKVQIQETDEARKKFSNAKSISS+QFFGDQN +
Sbjct: 264 VSPPKSSSFFAEFGMDSGFQKKSSNNSSKVQIQETDEARKKFSNAKSISSAQFFGDQNKA 323

Query: 299 IDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAG 358
            D+D+QVSLQKFSGS++ISSADLFG  SD+ S+DLAASDLINR+SFQAQQDISSLKNIAG
Sbjct: 324 TDIDSQVSLQKFSGSSAISSADLFGDSSDH-SIDLAASDLINRISFQAQQDISSLKNIAG 382

Query: 359 ETGKKLSSLASSLITDIQDRIL 380
           ETGKKLSSLAS+LITD+QDRIL
Sbjct: 383 ETGKKLSSLASTLITDLQDRIL 404

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474555|ref|XP_002278066.2| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Vitis vinifera] gi|297742095|emb|CBI33882.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224138128|ref|XP_002326525.1| predicted protein [Populus trichocarpa] gi|222833847|gb|EEE72324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224126465|ref|XP_002329561.1| predicted protein [Populus trichocarpa] gi|222870270|gb|EEF07401.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356526713|ref|XP_003531961.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Glycine max] Back     alignment and taxonomy information
>gi|356495867|ref|XP_003516792.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Glycine max] Back     alignment and taxonomy information
>gi|449462021|ref|XP_004148740.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Cucumis sativus] gi|449517898|ref|XP_004165981.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357517049|ref|XP_003628813.1| ADP-ribosylation factor GTPase-activating protein AGD10 [Medicago truncatula] gi|355522835|gb|AET03289.1| ADP-ribosylation factor GTPase-activating protein AGD10 [Medicago truncatula] Back     alignment and taxonomy information
>gi|115483614|ref|NP_001065477.1| Os10g0574800 [Oryza sativa Japonica Group] gi|12643061|gb|AAK00450.1|AC060755_20 unknown protein [Oryza sativa Japonica Group] gi|31433652|gb|AAP55136.1| GTPase activating protein, putative, expressed [Oryza sativa Japonica Group] gi|113640009|dbj|BAF27314.1| Os10g0574800 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|18414983|ref|NP_567543.1| putative ADP-ribosylation factor GTPase-activating protein AGD8 [Arabidopsis thaliana] gi|75244593|sp|Q8H100.1|AGD8_ARATH RecName: Full=Probable ADP-ribosylation factor GTPase-activating protein AGD8; Short=ARF GAP AGD8; AltName: Full=Protein ARF-GAP DOMAIN 8; Short=AtAGD8 gi|24030421|gb|AAN41368.1| unknown protein [Arabidopsis thaliana] gi|51970716|dbj|BAD44050.1| unknown protein [Arabidopsis thaliana] gi|51971433|dbj|BAD44381.1| unknown protein [Arabidopsis thaliana] gi|62319827|dbj|BAD93852.1| hypothetical protein [Arabidopsis thaliana] gi|62320091|dbj|BAD94263.1| hypothetical protein [Arabidopsis thaliana] gi|110739292|dbj|BAF01559.1| hypothetical protein [Arabidopsis thaliana] gi|332658561|gb|AEE83961.1| putative ADP-ribosylation factor GTPase-activating protein AGD8 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
TAIR|locus:2141060413 AGD8 "AT4G17890" [Arabidopsis 1.0 0.920 0.638 1.2e-127
TAIR|locus:2178545402 AGD9 "AT5G46750" [Arabidopsis 0.986 0.932 0.625 2.5e-120
TAIR|locus:2063429395 RPA "AT2G35210" [Arabidopsis t 0.957 0.921 0.655 9.8e-119
UNIPROTKB|E1C322 522 ARFGAP3 "Uncharacterized prote 0.276 0.201 0.583 4e-51
ZFIN|ZDB-GENE-040426-1498 arfgap3 "ADP-ribosylation fact 0.284 0.216 0.562 1.3e-50
UNIPROTKB|F1SIB9 520 ARFGAP2 "Uncharacterized prote 0.236 0.173 0.630 1.8e-49
ZFIN|ZDB-GENE-051120-177 536 arfgap2 "ADP-ribosylation fact 0.236 0.167 0.619 2.4e-49
UNIPROTKB|Q9NP61 516 ARFGAP3 "ADP-ribosylation fact 0.276 0.203 0.574 2.9e-49
UNIPROTKB|A1L520 520 ARFGAP2 "ADP-ribosylation fact 0.236 0.173 0.641 4.1e-49
UNIPROTKB|Q8N6H7 521 ARFGAP2 "ADP-ribosylation fact 0.236 0.172 0.630 1e-48
TAIR|locus:2141060 AGD8 "AT4G17890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1253 (446.1 bits), Expect = 1.2e-127, P = 1.2e-127
 Identities = 247/387 (63%), Positives = 295/387 (76%)

Query:     1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGN 60
             +CFDC+AKNPTWASVTYGIFLCIDCSA HR+LGVHISFVRSTNLDSWS EQL+ M++GGN
Sbjct:    27 VCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGN 86

Query:    61 NRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGLXXXXXXXXXXXX 120
             NRAQVFFKQHGWTDGGKIEAKYTSRAA+LY+QILAKEVAK +AEE               
Sbjct:    87 NRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQL 146

Query:   121 XXXLPDVKIQDAPKENYQGRQETQDAPGSPKVSRTVLTSTVKKPLGAKKSGKTGGLGARK 180
                   V      +E    + E   A  SPK S TV+ ST KKP+GAK++GKTGGLGARK
Sbjct:   147 PEVSNGVSSYSVKEELPLSKHEATSATSSPKASNTVVPSTFKKPIGAKRTGKTGGLGARK 206

Query:   181 LTSKPSESLYEQKPEEXX-----XXXXXXXXXXXXXXLPFASRFEYVDNVQSSELSSGGP 235
             LT+KP ++LYEQKPEE                       FASRFEY D++QS   S GG 
Sbjct:   207 LTTKPKDNLYEQKPEEVAPVIPAVSSTNNGESKSSAGSSFASRFEYNDDLQSGGQSVGGT 266

Query:   236 QVLSHVAPPKSSSFFADYGMDNGFQKKSGS--SKVQIQETDEARKKFSNAKSISSSQFFG 293
             QVL+HVAPPKSSSFF+D+GMD+ F KKS S  SK Q++E+DEARKKF+NAKSISS+Q+FG
Sbjct:   267 QVLNHVAPPKSSSFFSDFGMDSSFPKKSSSNSSKSQVEESDEARKKFTNAKSISSAQYFG 326

Query:   294 DQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSL 353
             DQN + D++++ +LQKF+GSASISSAD +GHD D++++D+ ASDLINRLSFQAQQD+SSL
Sbjct:   327 DQNKNADLESKATLQKFAGSASISSADFYGHDQDDSNIDITASDLINRLSFQAQQDLSSL 386

Query:   354 KNIAGETGKKLSSLASSLITDIQDRIL 380
              NIAGET KKL +LAS + +DIQDR+L
Sbjct:   387 VNIAGETKKKLGTLASGIFSDIQDRML 413
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2178545 AGD9 "AT5G46750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063429 RPA "AT2G35210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C322 ARFGAP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1 arfgap3 "ADP-ribosylation factor GTPase activating protein 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SIB9 ARFGAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051120-177 arfgap2 "ADP-ribosylation factor GTPase activating protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NP61 ARFGAP3 "ADP-ribosylation factor GTPase-activating protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A1L520 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N6H7 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H100AGD8_ARATHNo assigned EC number0.66920.99210.9128yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 1e-142
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 9e-44
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 9e-41
COG5347319 COG5347, COG5347, GTPase-activating protein that r 4e-36
PLN03119 648 PLN03119, PLN03119, putative ADP-ribosylation fact 5e-05
PLN03131 705 PLN03131, PLN03131, hypothetical protein; Provisio 0.004
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information 
 Score =  410 bits (1054), Expect = e-142
 Identities = 255/378 (67%), Positives = 298/378 (78%), Gaps = 15/378 (3%)

Query: 1   MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGN 60
           +CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS+EQLKMM+YGGN
Sbjct: 24  ICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGN 83

Query: 61  NRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEA-GLPSSPVASQPAQ 119
           NRAQVFFKQ+GW+DGGK EAKYTSRAA+LYKQILAKEVAK+ AEE   LP SP  S   Q
Sbjct: 84  NRAQVFFKQYGWSDGGKTEAKYTSRAADLYKQILAKEVAKSKAEEELDLPPSPPDS--TQ 141

Query: 120 AANALPDVKIQDAPKE-NYQGRQETQD-APGSPKVSRTVLTSTVKKPLGAKKSGKTGGLG 177
             N L  +K  +A KE N   +QE  D  P SP++SR     +VKKPLGAKK+GKTGGLG
Sbjct: 142 VPNGLSSIKTSEALKESNTLKQQEKPDVVPVSPRISR-----SVKKPLGAKKTGKTGGLG 196

Query: 178 ARKLTSKPSESLYEQKPEEPSVPISSSTSNTSSVSLPFASRFEYVDNVQSSELSSGGPQV 237
           ARKLT+K S +LY+QKPEE  +  ++S  +  S    F+SRF+Y DNVQ+ E     PQV
Sbjct: 197 ARKLTTKSSGTLYDQKPEESVIIQATSPVSAKSARSSFSSRFDYADNVQNRE-DYMSPQV 255

Query: 238 LSHVAPPKSSSFFADYGMDNG--FQKK--SGSSKVQIQETDEARKKFSNAKSISSSQFFG 293
           +SHVAPPKSS FF +    NG  FQKK  + SSK+QIQETDEARKKF+NAKSISS+Q+FG
Sbjct: 256 VSHVAPPKSSGFFEEELEMNGGRFQKKPITSSSKLQIQETDEARKKFTNAKSISSAQYFG 315

Query: 294 DQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSL 353
           + NNS D++ + SL+KFSGS++ISSADLFG    + +LDL A DL+NRLS QAQQDISSL
Sbjct: 316 NDNNSADLEAKSSLKKFSGSSAISSADLFGDSDGDFTLDLTAGDLLNRLSLQAQQDISSL 375

Query: 354 KNIAGETGKKLSSLASSL 371
           KN+A ET KKL S+ASSL
Sbjct: 376 KNMAEETKKKLGSVASSL 393

Length = 395
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 380
PLN03114395 ADP-ribosylation factor GTPase-activating protein 100.0
KOG0706454 consensus Predicted GTPase-activating protein [Sig 100.0
KOG0704386 consensus ADP-ribosylation factor GTPase activator 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 100.0
KOG0703287 consensus Predicted GTPase-activating protein [Sig 99.96
smart00105112 ArfGap Putative GTP-ase activating proteins for th 99.96
PF01412116 ArfGap: Putative GTPase activating protein for Arf 99.96
PLN03131 705 hypothetical protein; Provisional 99.89
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 99.89
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.82
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.72
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 99.66
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.47
KOG0702 524 consensus Predicted GTPase-activating protein [Sig 98.44
KOG0521785 consensus Putative GTPase activating proteins (GAP 92.92
PLN03114395 ADP-ribosylation factor GTPase-activating protein 87.78
KOG0706454 consensus Predicted GTPase-activating protein [Sig 86.86
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6e-94  Score=700.53  Aligned_cols=363  Identities=70%  Similarity=1.024  Sum_probs=319.7

Q ss_pred             CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhhcCCCCCCchhh
Q 016929            1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEA   80 (380)
Q Consensus         1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~~~~~~~~~i~~   80 (380)
                      +|||||+++|+|+|++||||||++|+|+||.||+|||||||++||.|+++||++|+.|||.++++||++||+.....|++
T Consensus        24 ~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD~Ws~eqL~~Mk~GGN~rA~~fF~qhG~~~~~~~~~  103 (395)
T PLN03114         24 ICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNRAQVFFKQYGWSDGGKTEA  103 (395)
T ss_pred             cCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCCCCCHHHHHHHHHhcCHHHHHHHHHcCCCCCCCccc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999987678999


Q ss_pred             hhccHHHHHHHHHHHHHHHHHhhhcc-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CcCCCCCCCCCC-CCCCcccccc
Q 016929           81 KYTSRAAELYKQILAKEVAKNMAEEA-GLPSSPVASQPAQAANALPDVKIQDAPKE-NYQGRQETQDAP-GSPKVSRTVL  157 (380)
Q Consensus        81 KY~~~~a~~Yr~~l~~~v~~~~~~~~-~~~~~~~~~~~~~~~Dff~~~~~~~~p~~-~~~~~~~~~~~~-~~p~~~~~~~  157 (380)
                      ||.++++.+||++|+++|++.+.++. .+|+.++++  ...+|+|++.+..+.|.. ++++..+.+... .+|++     
T Consensus       104 KY~S~aA~~Yre~L~keVa~~~a~~~~~~p~~~~~~--~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~s~~~-----  176 (395)
T PLN03114        104 KYTSRAADLYKQILAKEVAKSKAEEELDLPPSPPDS--TQVPNGLSSIKTSEALKESNTLKQQEKPDVVPVSPRI-----  176 (395)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc--cccccCcccccccccccccCCcccccCCcccCCCCCC-----
Confidence            99999999999999999999998765 345555543  237899999888776643 234443333222 24543     


Q ss_pred             cccccCCCccccCCCCCCccccccCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCCcccchhchhhhcccccCCCCCC
Q 016929          158 TSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEPSVPISSSTSNT-SSVSLPFASRFEYVDNVQSSELSSGGPQ  236 (380)
Q Consensus       158 s~~~kk~~~akk~~K~~~LgakKv~~~~~e~~~d~~~ee~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (380)
                      +++.|||+|+||.||+|||||+|++++..|.||||++|| .++.+++++.. +...++.++||.|.|+++. +...++..
T Consensus       177 ~~~~kk~~gak~~gktgglg~~klttk~~~~ly~qkp~e-~~~~~~~~~~~~~~~~~~~~srf~y~d~~~~-~~~~~~~~  254 (395)
T PLN03114        177 SRSVKKPLGAKKTGKTGGLGARKLTTKSSGTLYDQKPEE-SVIIQATSPVSAKSARSSFSSRFDYADNVQN-REDYMSPQ  254 (395)
T ss_pred             ccccccccccccccccCCccccccccCCchhhhhcCccc-cCCCCCCCccccccCCCCcchhhhhcccccc-ccccCCcc
Confidence            357899999999999999999999999999999999999 55555555443 3455677899999999998 66677789


Q ss_pred             cccccCCCCCCccc-ccCCCCcC-CCCCCC--CcccchhhhHHHHHHhccCCcCccccccCCCCCccchhHHHHhhhccC
Q 016929          237 VLSHVAPPKSSSFF-ADYGMDNG-FQKKSG--SSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSG  312 (380)
Q Consensus       237 ~~~~~~~~~~~~~~-~~~g~~~~-~~~~~~--~~~~~~~~t~~a~~KFgnaKaISSd~yFGr~~~~a~~ea~~rL~~F~g  312 (380)
                      ..+||+||++..|| .+|||+.+ +++++.  +.+.+++++++||+||||||+||||||||+++..+++|++.||++|+|
T Consensus       255 ~~~hvapp~ss~ff~~e~g~~~~~~~k~~~~~~~k~q~~e~~~a~kKF~naKsisS~qfFg~~~~~~d~~~~~~l~kf~g  334 (395)
T PLN03114        255 VVSHVAPPKSSGFFEEELEMNGGRFQKKPITSSSKLQIQETDEARKKFTNAKSISSAQYFGNDNNSADLEAKSSLKKFSG  334 (395)
T ss_pred             cccccCCCccchhhHHhhcCCcccccCCCCCccccccccchHHHHHHhcccccccHHhhccccccccchhhHHHHHhhcc
Confidence            99999999999999 68999998 888776  677899999999999999999999999999998889999999999999


Q ss_pred             CcccccccccCCCCCCcccchhhHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016929          313 SASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLI  372 (380)
Q Consensus       313 atsISS~~yFg~~~~~~~~~~sA~dl~~~~~~~a~~Dl~~lk~~v~~~A~KLs~~a~~~~  372 (380)
                      +++|||+|||||++++.+++++|.||++||++||.+||+.||+++++++.||++||++++
T Consensus       335 s~~ISsad~fg~~~~d~~id~ta~dli~r~s~qa~qd~sslkn~aget~~kl~s~as~~~  394 (395)
T PLN03114        335 SSAISSADLFGDSDGDFTLDLTAGDLLNRLSLQAQQDISSLKNMAEETKKKLGSVASSLW  394 (395)
T ss_pred             ccccchHHhcCCCCccccccccHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999988889999999999999999999999999999999999999999875

>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 2e-30
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 3e-30
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 8e-25
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 7e-22
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 3e-21
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 6e-21
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 3e-18
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 9e-17
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 1e-15
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 1e-15
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 1e-15
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 4e-12
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 4e-12
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 2e-10
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 8e-10
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 9e-10
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 3e-04
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 3e-04
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 70/92 (76%), Gaps = 2/92 (2%)
Query: 2   CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGN 60
           CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF+RST LDS W+  QL+ M  GGN
Sbjct: 40  CFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGN 99
Query: 61  NRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQ 92
             A  FF+QHG T       KY SRAA++Y++
Sbjct: 100 ANATAFFRQHGCT-ANDANTKYNSRAAQMYRE 130
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
2owa_A138 Arfgap-like finger domain containing protein; zinc 5e-51
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 5e-50
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 2e-49
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 7e-49
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 1e-48
3o47_A329 ADP-ribosylation factor GTPase-activating protein 5e-41
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 2e-38
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 1e-37
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 4e-37
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 7e-37
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 2e-33
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 2e-32
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 7e-32
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 1e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
 Score =  166 bits (422), Expect = 5e-51
 Identities = 44/100 (44%), Positives = 67/100 (67%), Gaps = 1/100 (1%)

Query: 2   CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNN 61
           CFDC ++NPTW S+++ +F+C++CS+ HR +GVHISFVRS++LD ++  QL  M  GGN 
Sbjct: 39  CFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNG 98

Query: 62  RAQVFFKQHGWTDGGK-IEAKYTSRAAELYKQILAKEVAK 100
           RA+ +FKQ    +     +   +S     YKQIL  E+++
Sbjct: 99  RARNYFKQVLGVNFSPKTKEYASSICGRQYKQILDSEISE 138
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 100.0
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 100.0
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 100.0
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 100.0
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 99.97
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 99.97
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 99.96
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.94
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.93
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 99.92
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.89
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.88
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.88
1gnf_A46 Transcription factor GATA-1; zinc finger, transcri 81.84
2vut_I43 AREA, nitrogen regulatory protein AREA; transcript 80.11
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.6e-37  Score=272.18  Aligned_cols=105  Identities=56%  Similarity=1.027  Sum_probs=100.2

Q ss_pred             CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCC-CCHHHHHHHhcCChHHHHHHHhhcCCCCCCchh
Q 016929            1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIE   79 (380)
Q Consensus         1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~-W~~~~l~~m~~gGN~~~~~~~~~~~~~~~~~i~   79 (380)
                      +|+|||+++|+|+|++||||||++|+|+||.||+|||+||||+||. |+++||++|+.+||.++|+||++|+... .+|+
T Consensus        31 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~~~~~-~~i~  109 (149)
T 2crw_A           31 VCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCST-NDTN  109 (149)
T ss_dssp             BCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHHHHHHHHCCCC-CCHH
T ss_pred             cCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHHHHHHhcCCCC-cchh
Confidence            5999999999999999999999999999999999999999999996 9999999999999999999999998864 7899


Q ss_pred             hhhccHHHHHHHHHHHHHHHHHhhhcc
Q 016929           80 AKYTSRAAELYKQILAKEVAKNMAEEA  106 (380)
Q Consensus        80 ~KY~~~~a~~Yr~~l~~~v~~~~~~~~  106 (380)
                      +||.++++.+||++|.+.+++++..++
T Consensus       110 ~KY~s~~a~~Yr~~l~~~~~~~~~~~~  136 (149)
T 2crw_A          110 AKYNSRAAQLYREKIKSLASQATRKHG  136 (149)
T ss_dssp             HHTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hCcCcHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999887654
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Back     alignment and structure
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 380
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 5e-32
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (288), Expect = 5e-32
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 2   CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNN 61
           C DC A +PTW S   GI  CI+CS +HR LGVH S ++S  LD     +L +    GN 
Sbjct: 18  CCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNA 77

Query: 62  RAQVFFKQHGWTDGGKIEAKYTSRAAELYKQ--ILAKEVAK 100
                 +    ++      K    +  + ++  I AK + +
Sbjct: 78  GFNEIMECCLPSEDPV---KPNPGSDMIARKDYITAKYMER 115

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 99.96
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 85.8
d1y0ja139 Erythroid transcription factor GATA-1 {Mouse (Mus 80.07
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.4e-31  Score=226.20  Aligned_cols=71  Identities=38%  Similarity=0.689  Sum_probs=69.3

Q ss_pred             CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhhcC
Q 016929            1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHG   71 (380)
Q Consensus         1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~~~   71 (380)
                      +|||||+++|+|+|++||||||++|||+||.||+|||+|||++||.|++++|++|+.+||..+|+||+++.
T Consensus        17 ~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~~~ea~~   87 (122)
T d1dcqa2          17 VCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCL   87 (122)
T ss_dssp             BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTC
T ss_pred             ccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHHHHHhhC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999774
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure